Genoscope projects

• Sequencing of complete genomes
• Sequencing of chromosomal regions
• Expression data
• BES, STS, Microsatellites, others

Sequencing of complete genomes

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Organism	Project title	Status	State
Acinetobacter baumanii MDR	Whole genome shotgun	collaboration	in progress
Acinetobacter baumannii VEB and SDF	Whole genome shotgun	collaboration	in progress
Acinetobacter baylyi	Whole genome shotgun	Genoscope	completed
Anopheles gambiae	STC - Whole Genome (shotgun)	collaboration	completed
Arabidopsis thaliana	Chromosome 3 bottom arm	Genoscope	completed
Arthrospira sp. PCC8005	Whole genome shotgun	collaboration	in progress
Azospirillum lipoferum	Whole genome shotgun	collaboration	in progress
Babesia microti	Whole genome shotgun	collaboration	in progress
Bacillus cereus F0837/76	Whole genome shotgun	collaboration	in progress
Blastocystis hominis	Whole genome shotgun	collaboration	in progress
Botrytis cinerea	Whole genome shotgun	collaboration	in progress
Brachiola algerae	Whole genome shotgun	collaboration	in progress
Bradyrhizobium sp. ORS278	Whole genome shotgun	collaboration	in progress
Clostridium sticklandii DSM519	Whole genome shotgun	Genoscope	in progress
Cotesia congregata	Polydnavirus genome	collaboration	completed
Deinococcus deserti VCD115	Whole genome shotgun	collaboration	in progress
Ectocarpus siliculosus	Whole Genome Shotgun	collaboration	in progress
Encephalitozoon cuniculi	Whole genome shotgun	collaboration	completed
Enterococcus lactis	Whole genome shotgun	collaboration	in progress
Escherichia coli B	Whole genome shotgun	collaboration	in progress
Escherichia fergusonii ATCC 35469T, Escherichia coli IAI 1, 55989, IAI39, UMN026, ED1a, S88	Whole genome shotgun	collaboration	in progress
Flavobacterium branchiophilum	Whole genome shotgun	collaboration	in progress
Frankia alni ACN14a	Whole genome shotgun	collaboration	completed
Herminiimonas arsenicoxydans sp. nov	Global random shotgun sequencing	collaboration	in progress
Homo sapiens	Chromosome 14 long arm	Genoscope	completed
Hyposoter didymator Ichnovirus	Whole genome shotgun	collaboration	in progress
Lactobacillus bulgaricus	Whole genome shotgun	collaboration	completed
Lactococcus lactis	Whole genome shotgun	collaboration	completed
Legionella pneumophila	Whole genome shotgun	collaboration	in progress
Marine cytophagales	Whole genome shotgun	collaboration	in progress
Marinobacter hydrocarbonoclasticus ATCC49840	Whole genome shotgun	collaboration	in progress
Methylobacterium dichloromethanicum DM4	Whole genome shotgun	collaboration	in progress
Mycobacterium	Whole genome shotgun	collaboration	in progress
Mycoplasma agalactiae PG2 et 5632	Whole genome shotgun	collaboration	in progress
Mycoplasma hominis PG21	Whole genome shotgun	collaboration	in progress
Mycoplasma mycoides ssp. mycoides LC	Whole genome shotgun	collaboration	in progress
Mycoplasma pulmonis UAB CTIP	Whole genome shotgun	collaboration	completed
Oikopleura dioica	Whole genome shotgun	collaboration	in progress
Oryza sativa	Chromosome 12	Genoscope	completed
Paramecium tetraurelia	Whole genome shotgun	collaboration	in progress
Podospora anserina	Whole genome shotgun	collaboration	in progress
Prochlorococcus marinus SS120	Whole genome shotgun	collaboration	completed
Propionibacterium freudenreichii ssp shermanii ATCC9614	Whole genome shotgun	collaboration	in progress
Pseudomonas L48	Global random shotgun sequencing	collaboration	completed
Pyrococcus abyssi	Whole genome shotgun	collaboration	completed
Ralstonia solanacearum GMI1000, MolK2 and 1609	Whole genome shotgun	collaboration	completed
Ralstonia taiwanensis LMG19424	Whole genome shotgun	collaboration	in progress
Rickettsia conorii	Whole genome shotgun	collaboration	completed
Saccharomyces cerevisiae EC1118	Whole genome Shotgun	collaboration	in progress
Staphylococcus xylosus C2a	Whole genome shotgun	collaboration	in progress
Streptococcus salivarius JIM8777, JIM8780	Whole genome shotgun	collaboration	in progress
Synechococcus sp. WH7803 et RCC307	Whole genome shotgun	collaboration	in progress
Tetraodon nigroviridis	Whole genome shotgun	Genoscope	completed
Thiomonas spp.	Global random shotgun sequencing	collaboration	in progress
Tropheryma whipplei	Whole genome shotgun	collaboration	in progress
Vitis vinifera	Genome sequence	collaboration	in progress
Xanthomonas albilineans	Whole genome shotgun	collaboration	in progress

Sequencing of chromosomal regions

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Organism	Project title	Status	State
Capra hircus	PIS locus	collaboration	in progress
Drosophila simulans	Sequencing of a 200 kb-region of a X chromosom	collaboration	in progress
Helicoverpa armigera	Sequencing of a selection of BACs from noctuids	collaboration	in progress
Homo sapiens	8q13-q21	collaboration	in progress
Homo sapiens	Metagenome of the human intestinal microfloral	collaboration	in progress
Homo sapiens	D12S1604	collaboration	in progress
Homo sapiens	16q12.1	collaboration	in progress
Homo sapiens	13q14.3	collaboration	completed
Homo sapiens	2p21 (SPG4)	Genoscope	completed
Homo sapiens	19q13.3	collaboration	completed
Leptosphaeria maculans	Genomic region involved in host specificity	collaboration	in progress
Mus musculus	D11Mit33 - D11Mit36 (Om)	collaboration	in progress
Phaseolus vulgaris	Sequencing of the Co-2 region	collaboration	in progress
Spodoptera frugiperda	Sequencing of a selection of BACs from noctuids	collaboration	in progress
Streptomyces ambofaciens	Partial sequencing of the linear chromosome	collaboration	in progress
Sus scrofa	Class I pig major histocompatibility complex	collaboration	completed
Triticum ssp	Comparative genome sequencing in wheat	collaboration	in progress
Xiphophorus maculatus	Analysis of the platyfish sex-determining region	collaboration	in progress

Expression data

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Organism	Project title	Status	State
Acyrthosiphon pisum	ESTs library	collaboration	in progress
Alnus glutinosa and Casuarina glauca	EST library	collaboration	in progress
Alvinella pompejana	cDNA library	collaboration	in progress
Aphanomyces euteiches	cDNA library	collaboration	in progress
Botrytis cinerea	cDNA library	collaboration	completed
Ciona intestinalis	Characterization of the gene expression program in the Ascidian embryo.	collaboration	completed
Citrus clementina	cDNA library	collaboration	in progress
Crassostrea gigas	ESTs library	collaboration	in progress
Eucalyptus	ESTs library	collaboration	in progress
Gallus gallus	Analysis of the process of self-renewal using SAGE	collaboration	in progress
Hirudo medicinalis	ESTs library	collaboration	in progress
Homo sapiens	Study of a gene of susceptibility for autism	collaboration	in progress
Diabetic nephropathy	SAGE	collaboration	in progress
Lampetra fluviatilis	ESTs library	collaboration	in progress
Medicago truncatula	cDNA libraries	collaboration	completed
Microbotryum violaceum	ESTs library	collaboration	in progress
Mus musculus	Analysis of a normalized cDNA library in the framework of a study of degeneration of the retina	collaboration	in progress
Mus musculus	Expression analysis in dystrophin-deficient mdx-mouse muscles	collaboration	completed
Mus musculus	SAGE analysis of the early embryo	collaboration	completed
Oryza sativa	FST library	collaboration	in progress
Phaeodactylum tricornutum	ESTs library	collaboration	in progress
Scyliorhinus canicula	ESTs library	collaboration	in progress
Spadella cephaloptera	ESTs library	collaboration	in progress
Theobroma cacao	cDNA library	collaboration	in progress
Xenopus tropicalis	Analysis of a pre and postmetamorphic cDNA library of the central nervous system	collaboration	in progress

BES, STS, Microsatellites, others...

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Organism	Project title	Status	State
-	Microsatellite-rich genomic DNA fragment of four tropical plants	collaboration	completed
Anaerobic bacteria	Global characterization of biodiversity of bacteria from complex anaerobic environments of interest to humans	collaboration	in progress
Arabidopsis thaliana	STC	Genoscope	completed
Botrytis cinerea	Impact of transposable elements on the structure of the chromosomes of the phytopathogenic fungus	collaboration	in progress
Drosophila melanogaster	STC (BDGP)	collaboration	completed
Drosophila melanogaster	STC (EDGP)	collaboration	completed
Hemiascomycetes	RST from 13 hemiascomycetes yeasts	collaboration	completed
Homo sapiens	Human loci with hypermutable minisatellites	collaboration	completed
Mus musculus	Radiation hybrid mapping	collaboration	in progress
Tropical plants and parasites	Identification of microsatellites in several species of tropical plants and some of their pathogens	collaboration	completed
Schistosoma mansoni	STC	collaboration	completed
Triticum	Microsatellite markers of wheat	collaboration	completed

intention	in progress	completed

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