DIGEST: Main script for DIGEST workflow CCRT version
DIGEST_functions: Class and functions use by the DIGEST workflow
ExtractFastaFromSAM: Extract overlapped paired-end reads and unmapped paired-end reads
from a SAM file sorted by reads names.
SAMparser: Extract mapped or unmapped lines of SAM file with or without header
and can sort result by query or subject
extendTargets_allPossibility: Extension of each sequence target with the mapped contig, if a
target is mapped on several contigs, each possibility are kept.
extractORFsequences: Extract ORFs sequences in FASTA format from MetaGene output file
and target extended FASTA file