Module ExtractFastaFromSAM

Extract overlapped paired-end reads and unmapped paired-end reads from a SAM file sorted by reads names.

Requires: DIGEST_functions.py (PYTHONPATH)

Input : SAM file sorted by reads names Output : overlapped paired-end reads and unmapped paired-end reads in FASTA format

Functions

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get_parser()

source code

main()

source code

Variables

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__doc__ = ...

__package__ = None

Variables Details

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doc

Value:

"""
Extract overlapped paired-end reads and unmapped paired-end reads from
 a SAM file sorted by reads names.

@requires: DIGEST_functions.py (PYTHONPATH)

Input : SAM file sorted by reads names
Output : overlapped paired-end reads and unmapped paired-end reads in 
...