Module extractORFsequences

source code

Extract ORFs sequences in FASTA format from MetaGene output file and target extended FASTA file

Requires: DIGEST_functions.py (PYTHONPATH)

Output : PREFIX_complete.fasta and PREFIX_partial.fasta

Functions

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get_parser()

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main()

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Variables

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__doc__ = ...

__package__ = None

Variables Details

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doc

Value:

"""
Extract ORFs sequences in FASTA format from MetaGene output file and t
arget extended FASTA file 

@requires: DIGEST_functions.py (PYTHONPATH)

Output : PREFIX_complete.fasta and PREFIX_partial.fasta
"""