Class Hierarchy

• csv.Dialect: Describe an Excel dialect.
  • DIGEST_functions.MyDialect: csv class use to read csv files
• object: The most base type
  • DIGEST_functions.Cigar: New alignment CIGAR object
  • DIGEST_functions.ContigORF: New contig ORF object from MetaGene output
  • DIGEST_functions.ORF: New ORF object from MetaGene output
  • DIGEST_functions.alignmentSAM: New alignmentSAM object from a line of a SAM file, see SAM format for more informations
  • DIGEST_functions.cluster: New cluster object
  • DIGEST_functions.clusterSequence: New sequence in a cluster object
  • DIGEST_functions.jobLauncher: Create class able to launch a list of jobs on SLURM or LSF on a Job Scheduler
  • DIGEST_functions.sequence: New sequence object