Module DIGEST_functions :: Class ContigORF

Class ContigORF

object --+
         |
        ContigORF

New contig ORF object from MetaGene output

Instance Methods

[hide private]

__init__(self, ligne1, ligne2)
Initialize the ContigORF class

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

float

GC
GC% in sequence

list

ORFlist
list of ORF objects

string

model
ORF model (bacteria, archaea or eukaryote)

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, ligne1, ligne2)
(Constructor)

source code

Initialize the ContigORF class

Parameters:

ligne1 (list) - 1st line of a block in a MetaGene output file
ligne2 (list) - 2nd line of a block in a MetaGene output file

Overrides: object.__init__

Class ContigORF

__init__(self, ligne1, ligne2) (Constructor)

init(self, ligne1, ligne2)
(Constructor)