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DIGEST
Module DIGEST_functions :: Class ORF
[hide private]
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Class ORF

source code

object --+
         |
        ORF

New ORF object from MetaGene output

Instance Methods [hide private]
 
__init__(self, ligne)
Initialize the ORF class		 source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
integer frame
frame (1,2 or 3)
integer posEND
ORF stop position in sequence
integer posSTART
ORF start position in sequence
float score
ORF score
string statut
statut partial or complete
character strand
strand (+ or -)
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, ligne)
(Constructor)

source code 

Initialize the ORF class

Parameters:
  • ligne (list) - ORF line from a MetaGene output file
Overrides: object.__init__

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