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DIGEST
Module DIGEST_functions :: Class Cigar
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Class Cigar

source code

object --+
         |
        Cigar

New alignment CIGAR object

Instance Methods [hide private]
 
__init__(self, strcigar)
Initialize Cigar class		 source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
integer AlignLength
number of match and mismatch
list Code
code containing int and char compound the CIGAR
integer SumDeletion
number of deletion
integer SumInsertion
number of insertion
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, strcigar)
(Constructor)

source code 

Initialize Cigar class

Parameters:
  • strcigar (string) - CIGAR from a SAM line
Overrides: object.__init__

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