Module SAMparser

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Module SAMparser

Extract mapped or unmapped lines of SAM file with or without header and can sort result by query or subject

Requires: SamTools

Functions

get_parser()

source code

main()

source code

Variables

__doc__ = ...

__package__ = None

Variables Details

doc

Value:

"""
Extract mapped or unmapped lines of SAM file
with or without header 
and can sort result by query or subject

@requires: U{SamTools<http://sourceforge.net/projects/samtools/files/>
}
"""