Module extendTargets_allPossibility

Extension of each sequence target with the mapped contig, if a target is mapped on several contigs, each possibility are kept.

Unmapped contig are lost.

Requires: DIGEST_functions.py (PYTHONPATH)

Input : SAM file without header only with mapped line and sort by query Output : target extended FASTA file

Functions

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get_parser()

source code

main()

source code

Variables

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__doc__ = ...

__package__ = None

Variables Details

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doc

Value:

"""
Extension of each sequence target with the mapped contig,
if a target is mapped on several contigs, each possibility are kept.

Unmapped contig are lost.

@requires: DIGEST_functions.py (PYTHONPATH)

...