NaS datasets


Acinetobacter baylyi ADP1 (Sequences from Genoscope)
Reads aligned with reference Number of reads Number of reads > 10 Kb Cumulative size(Mbp) Average size(bp) N50 size(bp) Maximum size(bp) Number of aligned reads Mean identity percent Maximum alignment size Number of error-free reads
MinION reads aligned using LAST 89 01114 947381.44 284.513 376137 04329 954 (33.65%)70.0883%84 9140 (0%)
NaS reads (fast mode) aligned using bwa mem 24 0638 349212.7(59X)8 839.612 38985 16224 063 (100%)99.9891%85 16222 864 (95.01%)
NaS reads (sensitive mode) aligned using bwa mem 28 49211 252271.6(75X)953013 25691 25528 492 (100%)99.9897%91 25527 049 (94.93%)
We generated A. baylyi NaS reads using 1D and 2D reads of 6 MinIon runs and 50X of 250bp Illumina reads.

Escherichia coli K-12 substr. MG1655 (Sequences from Loman Lab)
Reads aligned with reference Number of reads Number of reads > 10 Kb Cumulative size(Mbp) Average size(bp) N50 size(bp) Maximum size(bp) Number of aligned reads Mean identity percent Maximum alignment size Number of error-free reads
MinION reads aligned using LAST 22 2704 406133.65 999.49 35647 13322 170 (99.55%)79.4559%47 1330 (0%)
NaS reads (fast mode) aligned using bwa mem 21 8187 233172.9(37X)7 925.510 48948 46321 818 (100%)99.9884%48 46320 153 (92.36%)
NaS reads (sensitive mode) aligned using bwa mem 22 1448 146183.9(40X)8 30710 93148 63822 144 (100%)99,9904%48 63820 452 (92,35%)
We generated E. coli NaS reads using 2D reads of MinIon runs and 50X of 300bp Illumina reads.

Saccharomyces cerevisae W303 (Sequences from Schatz Lab)
Reads aligned with reference Number of reads Number of reads > 10 Kb Cumulative size(Mbp) Average size(bp) N50 size(bp) Maximum size(bp) Number of aligned reads Mean identity percent Maximum alignment size Number of error-free reads
MinION reads aligned using LAST 267 76834 3001 465.65 473.37 937146 99268 215 (25.47%)55.4937%49 0770 (0%)
NaS reads (fast mode) aligned using bwa mem 71 7936 141426.3(34X)5 938.37 08545 74571 614 (99.75%)99.9246%39 95456 991 (79.58%)
NaS reads (sensitive mode) aligned using bwa mem 85 43213 270578.4(47X)6 7708 42746 15985 289 (99.83%)99.9427%46 15966 330 (77.77%)
We generated S. cerevisae NaS reads using 1D (only template) and 2D reads of MinIon runs and 50X of 250bp Illumina reads.