NaS assemblies


Statistics of NaS reads assemblies produced using Celera assembler
Acinetobacter baylyi ADP1 Escherichia coli K-12 substr. MG1655 Saccharomyces cerevisae W303
NaS Reads input coverage 13X (minimal coverage) 43X (optimal coverage) 14X (minimal coverage) 30X (optimal coverage) 13X of >10kb reads
# contig 1 1 1 1 121
Assembly size(pb) 3 621 348 3 632 197 4 650 875 4 654 321 12 766 451
Assembly GC(%) 40.44% 40.44% 50.79% 50.79% 38.5%
Reference GC(%) 40.43% 50.79% 38.21%
N50 size(bp) 3 621 348 3 632 197 4 650 875 4 654 321 154 851
L50 1 1 1 1 23
N90 size(pb) 3 621 348 3 632 197 4 650 875 4 654 321 48 531
L90 1 1 1 1 81
NA50 2 570 691 2 569 185 3 507 126 3 507 873 138 660
# misassemblies 2 2 2 2 79
# misassemblies contig 1 1 1 1 46
# local misassemblies 4 3 3 3 11
Genome fraction(%) 99.997% 100% 100.0% 100.0% 94.34%
Duplication ratio 1.007 1.009 1.002 1.003 1.103
# mismatches per 100 kbp 3.11 1.97 3.21 0.97 42.36
# indels per 100kbp 0.14 0.14 1.57 0.97 9.66
# Genes 3416 3416 4517 4517
Assemblies were performed using Celera assembler, and redundant contigs were eliminated from the raw output. Metrics were computed using Quast