Publications

2006
Aury J-M, Jaillon O, Duret L, Noel B, Jubin C, Porcel B, Ségurens B, Daubin V, Anthouard V, Aiach N, Arnaiz O, Billaut A, Beisson J, Blanc I, Bouhouche K, Câmara F, Duharcourt S, Guigo R, Gogendeau D, Katinka M, Keller A-M, Kissmehl R, Klotz C, Koll F, Le Mouël A, Lepère G, Malinsky S, Nowacki M, Nowak J K, Plattner H, Poulain J, Ruiz F, Serrano V, Zagulski M, Dessen P, Bétermier M, Weissenbach J, Scarpelli C, Schächter V, Sperling L, Meyer E, Cohen J & Wincker P.
"Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia"
Nature (in press)

Brunet FG, Crollius HR, Paris M, Aury JM, Gibert P, Jaillon O, Laudet V, Robinson-Rechavi M.
"Gene loss and evolutionary rates following whole-genome duplication in teleost fishes"
Mol Biol Evol. (2006) Sep 23(9):1808-16. Epub 2006 Jun 29.

2005
Eiglmeier K, Wincker P, Cattolico L, Anthouard V, Holm I, Eckenberg R, Quesneville H, Jaillon O, Collins FH, Weissenbach J, Brey PT, Roth CW
"Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation"
Insect Biochem Mol Biol. (2005) Aug 35(8):799-814. Epub 2005 Apr 12.

2004
Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigo R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H.
"Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype"
Nature. (2004) Oct 21;431(7011):946-57.

2003
Jaillon O, Aury JM, Roest Crollius H, Salanoubat M, Wincker P, Dossat C, Castelli V, Boudet N, Samair S, Eckenberg R, Bonneval S, Saurin W, Scarpelli C, Schachter V, Weissenbach J.
"Genome-wide analyses based on comparative genomics"
Cold Spring Harb Symp Quant Biol. (2003) 68:275-82. No abstract available.

Castelli V, Aury JM, Jaillon O, Wincker P, Clepet C, Menard M, Cruaud C, Quetier F, Scarpelli C, Schachter V, Temple G, Caboche M, Weissenbach J, Salanoubat M.
"Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation"
Genome Res. (2004) Mar 14(3):406-13.

Lutfalla G, Roest Crollius H, Stange-Thomann N, Jaillon O, Mogensen K, Monneron D.
"Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: the class II cytokine receptors and their ligands in mammals and fish"
BMC Genomics. (2003) Jul 17;4(1):29.

Jaillon O, Dossat C, Eckenberg R, Eiglmeier K, Segurens B, Aury JM, Roth CW, Scarpelli C, Brey PT, Weissenbach J, Wincker P.
"Assessing the Drosophila melanogaster and Anopheles gambiae genome annotations using genome-wide sequence comparisons"
Genome Res. (2003) Jul 13(7):1595-9.


Bouneau L, Fischer C, Ozouf-Costaz C, Froschauer A, Jaillon O, Coutanceau JP, Korting C, Weissenbach J, Bernot A, Volff JN.
"An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis"
Genome Res. (2003) Jul 13(7):1686-95. Epub 2003 Jun 12.

Heilig R, Eckenberg R, Petit JL, Fonknechten N, Da Silva C, Cattolico L, Levy M, Barbe V, de Berardinis V, Ureta-Vidal A, Pelletier E, Vico V, Anthouard V, Rowen L, Madan A, Qin S, Sun H, Du H, Pepin K, Artiguenave F, Robert C, Cruaud C, Bruls T, Jaillon O, Friedlander L, Samson G, Brottier P, Cure S, Segurens B, Aniere F, Samain S, Crespeau H, Abbasi N, Aiach N, Boscus D, Dickhoff R, Dors M, Dubois I, Friedman C, Gouyvenoux M, James R, Madan A, Mairey-Estrada B, Mangenot S, Martins N, Menard M, Oztas S, Ratcliffe A, Shaffer T, Trask B, Vacherie B, Bellemere C, Belser C, Besnard-Gonnet M, Bartol-Mavel D, Boutard M, Briez-Silla S, Combette S, Dufosse-Laurent V, Ferron C, Lechaplais C, Louesse C, Muselet D, Magdelenat G, Pateau E, Petit E, Sirvain-Trukniewicz P, Trybou A, Vega-Czarny N, Bataille E, Bluet E, Bordelais I, Dubois M, Dumont C, Guerin T, Haffray S, Hammadi R, Muanga J, Pellouin V, Robert D, Wunderle E, Gauguet G, Roy A, Sainte-Marthe L, Verdier J, Verdier-Discala C, Hillier L, Fulton L, McPherson J, Matsuda F, Wilson R, Scarpelli C, Gyapay G, Wincker P, Saurin W, Quetier F, Waterston R, Hood L, Weissenbach J.
"The DNA sequence and analysis of human chromosome 14"
Nature. (2003) Feb 6;421(6923):601-7. Epub 2003 Jan 1.

2002
Journet EP, van Tuinen D, Gouzy J, Crespeau H, Carreau V, Farmer MJ, Niebel A, Schiex T, Jaillon O, Chatagnier O, Godiard L, Micheli F, Kahn D, Gianinazzi-Pearson V, Gamas P.
"Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis"
Nucleic Acids Res. (2002) Dec 15;30(24):5579-92. Erratum in: Nucleic Acids Res. 2003 Mar 15;31(6):1803.

Dasilva C, Hadji H, Ozouf-Costaz C, Nicaud S, Jaillon O, Weissenbach J, Roest Crollius H.
"Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome"
Proc Natl Acad Sci U S A. (2002) Oct 15;99(21):13636-41. Epub 2002 Oct 4.

Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, Lai Z, Kraft CL, Abril JF, Anthouard V, Arensburger P, Atkinson PW, Baden H, de Berardinis V, Baldwin D, Benes V, Biedler J, Blass C, Bolanos R, Boscus D, Barnstead M, Cai S, Center A, Chaturverdi K, Christophides GK, Chrystal MA, Clamp M, Cravchik A, Curwen V, Dana A, Delcher A, Dew I, Evans CA, Flanigan M, Grundschober-Freimoser A, Friedli L, Gu Z, Guan P, Guigo R, Hillenmeyer ME, Hladun SL, Hogan JR, Hong YS, Hoover J, Jaillon O, Ke Z, Kodira C, Kokoza E, Koutsos A, Letunic I, Levitsky A, Liang Y, Lin JJ, Lobo NF, Lopez JR, Malek JA, McIntosh TC, Meister S, Miller J, Mobarry C, Mongin E, Murphy SD, O'Brochta DA, Pfannkoch C, Qi R, Regier MA, Remington K, Shao H, Sharakhova MV, Sitter CD, Shetty J, Smith TJ, Strong R, Sun J, Thomasova D, Ton LQ, Topalis P, Tu Z, Unger MF, Walenz B, Wang A, Wang J, Wang M, Wang X, Woodford KJ, Wortman JR, Wu M, Yao A, Zdobnov EM, Zhang H, Zhao Q, Zhao S, Zhu SC, Zhimulev I, Coluzzi M, della Torre A, Roth CW, Louis C, Kalush F, Mural RJ, Myers EW, Adams MD, Smith HO, Broder S, Gardner MJ, Fraser CM, Birney E, Bork P, Brey PT, Venter JC, Weissenbach J, Kafatos FC, Collins FH, Hoffman SL.
"The genome sequence of the malaria mosquito Anopheles gambiae"
Science. (2002) Oct 4;298(5591):129-49.

Grutzner F, Roest Crollius H, Lutjens G, Jaillon O, Weissenbach J, Ropers HH, Haaf T.
"Four-hundred million years of conserved synteny of human Xp and Xq genes on three Tetraodon chromosomes"
Genome Res. (2002) Sep 12(9):1316-22.

Roest Crollius H, Jaillon O, Bernot A, Pelletier E, Dasilva C, Bouneau L, Burge C, Yeh RF, Quetier F, Saurin W, Weissenbach J.
"Genome-wide comparisons between human and tetraodon"
Ernst Schering Res Found Workshop. (2002)(36):11-29. No abstract available.

2001
Charlier C, Segers K, Wagenaar D, Karim L, Berghmans S, Jaillon O, Shay T, Weissenbach J, Cockett N, Gyapay G, Georges M.
"Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8"
Genome Res. (2001) May 11(5):850-62.

Bolotin A, Wincker P, Mauger S, Jaillon O, Malarme K, Weissenbach J, Ehrlich SD, Sorokin A.
"The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403"
Genome Res. (2001) May 11(5):731-53.

2000
Roest Crollius H, Jaillon O, Dasilva C, Ozouf-Costaz C, Fizames C, Fischer C, Bouneau L, Billault A, Quetier F, Saurin W, Bernot A, Weissenbach J.
"Characterization and repeat analysis of the compact genome of the freshwater pufferfish Tetraodon nigroviridis"
Genome Res. (2000) Jul 10(7):939-49.

Roest Crollius H, Jaillon O, Bernot A, Dasilva C, Bouneau L, Fischer C, Fizames C, Wincker P, Brottier P, Quetier F, Saurin W, Weissenbach J.
"Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence"
Nat Genet. (2000) Jun 25(2):235-8.

Fischer C, Ozouf-Costaz C, Roest Crollius H, Dasilva C, Jaillon O, Bouneau L, Bonillo C, Weissenbach J, Bernot A.
"Karyotype and chromosome location of characteristic tandem repeats in the pufferfish Tetraodon nigroviridis"
Cytogenet Cell Genet. (2000) 88(1-2):50-5.

Scimeca JC, Franchi A, Trojani C, Parrinello H, Grosgeorge J, Robert C, Jaillon O, Poirier C, Gaudray P, Carle GF.
"The gene encoding the mouse homologue of the human osteoclast-specific 116-kDa V-ATPase subunit bears a deletion in osteosclerotic (oc/oc) mutants"
Bone. (2000) Mar 26(3):207-13.