Grape Genome Browser (12X)

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Search by position or name

Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed

Search :
Displays :
chr4:545844..565843
region of chromosome 4 from 545844 to 565843
chr1_random:3167420..3169413
region of chromosome 1 random from 3167420 to 3169413
scaffold_1
region of scaffold with identifier 1
GSVIVT01033593001
region of Genoscope annotation with identifier GSVIVT01033593001
A2YD35
matches with A2YD35 protein from Uniprot
flavone
matches with orthologous flavones proteins

About the Vitis project

This Grapevine genome sequence analysis results from a collaboration between Genoscope, INRA, the Institute of Applied Genomics and a consortium of Italian groups. The sequence data (12X coverage) was generated by Genoscope, The Institute of Applied Genomics and the University of Verona. The assembly was done by The Institute of Applied Genomics. The gene predictions were performed using the GAZE computational framework.
This project was financed by the French Ministry of Higher Education and Research, the Consortium National de Recherche en Génomique, the Agence Nationale de la Recherche, INRA, the Italian Ministry of Agriculture (VIGNA-CRA), and Regione Autonoma Friuli Venezia Giulia together with a consortium of private companies and banks (IGA).

Browse a chromosome


Vitis chromosome 1 Vitis chromosome 2 Vitis chromosome 3 Vitis chromosome 4 Vitis chromosome 5 Vitis chromosome 6 Vitis chromosome 7 Vitis chromosome 8 Vitis chromosome 9 Vitis chromosome 10 Vitis chromosome 11 Vitis chromosome 12 Vitis chromosome 13 Vitis chromosome 14 Vitis chromosome 15 Vitis chromosome 16 Vitis chromosome 17 Vitis chromosome 18 Vitis chromosome 19 Vitis karyotype


Assembly summary (download)


Number
N50 length (kb)
Coverage of the genome
Supercontigs
2,059
3,426
100.0%
Mapped ultracontigs
33
23,006
91.2%


Annotation summary (download)

Annotated genes
26,346
Annotated transcripts
26,346
Average number of coding exons per gene
5.95
Median gene size (bp)
3,572
Average CDS size (bp)
1,137
Median exon size (bp)
122