MaGuS is a reference-free evaluator of assembly quality and a map-guided scaffolder to improve assembly.
Download the MaGuS publication to learn more about MaGuS.
Go to the Github website to get the software archive, manual installation and usage instructions.
Download the Arabidopsis thaliana dataset (Sequences from Genoscope)
The bulk of the software is written in Perl, so it should run fine on most machines. If you do run into trouble however, use the address below to contact the developers.