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Publications du Genoscope

Publié le 25 juin 2018
  
A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century
Bremer E, Calteau A, Danchin A, Harwood C, Helmann JD, Medigue C, Palsson BO, Sekowska A, Vallenet D, Zuniga A and Zuniga C
Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks
Calvez L, Dereeper A, Perdereau A, Mournet P, Miranda M, Bruyere S, Hufnagel B, Froelicher Y, Lemainque A, Morillon R and Ollitrault P
The complete plastome of Centaurium erythraea subsp. majus (Hoffmanns. & Link) M.Lainz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus
Carvalho Leonardo I, Alberti A, Denoeud F, Barreto Crespo MT, Capelo J and Bustos Gaspar F
The complete plastome of Centaurium erythraea subsp. majus (Hoffmanns. & Link) M.Lainz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus
Carvalho Leonardo I, Alberti A, Denoeud F, Barreto Crespo MT, Capelo J and Bustos Gaspar F
The complete plastome of Glandora prostrata subsp. lusitanica (Samp.) D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the Glandora genus
Carvalho Leonardo I, Alberti A, Denoeud F, Barreto Crespo MT, Capelo J and Bustos Gaspar F
Discovery and Enzymatic Screening of Genome-Mined Microbial Levanases to Produce Second-Generation beta-(2,6)-Fructooligosaccharides: Catalytic Properties
Chen L, Hill A, Petit JL, Mariage A, de Berardinis V and Karboune S
Impacts of microplastics and the associated plastisphere on physiological, biochemical, genetic expression and gut microbiota of the filter-feeder amphioxus
Cheng J, Meistertzheim AL, Leistenschneider D, Philip L, Jacquin J, Escande ML, Barbe V, Ter Halle A, Chapron L, Lartaud F, Bertrand S, Escriva H and Ghiglione JF
In vitro Applications of the Terpene Mini-Path 2.0
Couillaud J, Amouric A, Courvoisier-Dezord E, Leydet L, Schweitzer N, Rosso MN, Hage H, Loussouarn-Yvon M, Vincentelli R, Petit JL, de Berardinis V, Attolini M, Maresca M, Duquesne K and Iacazio G
A paralog of Pcc1 is the fifth core subunit of the KEOPS tRNA-modifying complex in Archaea
Daugeron MC, Missoury S, Da Cunha V, Lazar N, Collinet B, van Tilbeurgh H and Basta T
Fluorescence Detection of the Persistent Organic Pollutant Chlordecone in Water at Environmental Concentrations
Della-Negra O, Kouassi AE, Dutasta JP, Saaidi PL and Martinez A
Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies
Dore H, Guyet U, Leconte J, Farrant GK, Alric B, Ratin M, Ostrowski M, Ferrieux M, Brillet-Gueguen L, Hoebeke M, Siltanen J, Le Corguille G, Corre E, Wincker P, Scanlan DJ, Eveillard D, Partensky F and Garczarek L
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
Dorrell RG, Kuo A, Fussy Z, Richardson EH, Salamov A, Zarevski N, Freyria NJ, Ibarbalz FM, Jenkins J, Pierella Karlusich JJ, Stecca Steindorff A, Edgar RE, Handley L, Lail K, Lipzen A, Lombard V, McFarlane J, Nef C, Novak Vanclova AM, Peng Y, Plott C, Potvin M, Vieira FRJ, Barry K, de Vargas C, Henrissat B, Pelletier E, Schmutz J, Wincker P, Dacks JB, Bowler C, Grigoriev IV and Lovejoy C
Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium
Dziuba MV, Paulus A, Schramm L, Awal RP, Posfai M, Monteil CL, Fouteau S, Uebe R and Schuler D
Native amine dehydrogenases can catalyze the direct reduction of carbonyl compounds to alcohols in the absence of ammonia
Fossey-Jouenne A, Ducrot L, Jongkind E, Elis‚e E, Zaparucha A, Grogan G, Paul C and Vergne-Vaxelaire C
Frontiers in Catalysis 3 (), 1105948, 2023
Plankton biogeography in the 21st century and impacts of climate change: advances through genomics
Fr‚mont P, Gehlen M and Jaillon O
Mirusviruses link herpesviruses to giant viruses
Ga‹a M, Meng L, Pelletier E, Forterre P, Vanni C, Fernandez-Guerra A, Jaillon O, Wincker P, Ogata H, Krupovic M and Delmont TO
Controlled E. coli aggregation mediated by DNA and XNA hybridization
Gasse C, Srivastava P, Shepers G, Jose J, Hollenstein M, Marliere P and Herdewijn P
Chembiochem (), e202300191, 2023
Mission Tara Microplastics: a holistic set of protocols and data resources for the field investigation of plastic pollution along the land-sea continuum in Europe
Ghiglione JF, Barbe V, Bruzaud S, Burgaud G, Cachot J, Eyheraguibel B, Lartaud F, Ludwig W, Meistertzheim AL, Paul-Pont I, Pesant S, Ter Halle A, Thiebeauld O and Mission Tara Microplastics c
Dynamics of gene loss following ancient whole-genome duplication in the cryptic Paramecium complex
Gout JF, Hao Y, Johri P, Arnaiz O, Doak TG, Bhullar S, Couloux A, Guerin F, Malinsky S, Potekhin A, Sawka N, Sperling L, Labadie K, Meyer E, Duharcourt S and Lynch M
The Replicative DnaE Polymerase of Bacillus subtilis Recruits the Glycolytic Pyruvate Kinase (PykA) When Bound to Primed DNA Templates
Holland A, Pitoulias M, Soultanas P and Janniere L
Life (Basel) 13 (4), , 2023
Pan-Arctic plankton community structure and its global connectivity
Ibarbalz F, Henry N, Mah‚ F, Ardyna M, Zingone A, Scalco E, Lovejoy C, Fabien L, Jaillon O, Iudicone D, Malviya S, Sullivan M, Chaffron S, Karsenti E, Babin M, Boss E, Wincker P, Zinger L, de Vargas C and Karp-Boss L
A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins
Jabeur R, Guyon V, Toth S, Pereira AE, Huynh MP, Selmani Z, Boland E, Bosio M, Beuf L, Clark P, Vallenet D, Achouak W, Audiffrin C, Torney F, Paul W, Heulin T, Hibbard BE, Toepfer S and Sallaud C
Synergistic activation of RARbeta and RARgamma nuclear receptors restores cell specialization during stem cell differentiation by hijacking RARalpha-controlled programs
Koshy A, Mathieux E, Studer F, Bramoulle A, Lieb M, Colombo BM, Gronemeyer H and Mendoza-Parra MA
Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology
Le Provost G, Lalanne C, Lesur I, Louvet JM, Delzon S, Kremer A, Labadie K, Aury JM, Da Silva C, Moritz T and Plomion C
Methanocaldococcus lauensis sp. nov., a novel deep-sea hydrothermal vent hyperthermophilic methanogen
L'Haridon S, Goulaouic S, St John E, Fouteau S and Reysenbach A-L
DNA methylation-based profiling of horse archaeological remains for age-at-death and castration
Liu X, Seguin-Orlando A, Chauvey L, Tressieres G, Schiavinato S, Tonasso-Calviere L, Aury JM, Perdereau A, Wagner S, Clavel P, Estrada O, Pan J, Ma Y, Enk J, Devault A, Klunk J, Lepetz S, Clavel B, Jiang L, Wincker P, Collin YRH, Sarkissian C and Orlando L
Computing marine plankton connectivity under thermal constraints
Manral D, Iovino D, Jaillon O, Masina S, Sarmento H, Iudicone D, Amaral-Zettler L and van Sebille E
Analysis of the P.ÿlividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes
Marl‚taz F, Couloux A, Poulain J, Labadie K, Da Silva C, Mangenot S, Noel B, Poustka AJ, Dru P, Pegueroles C, Borra M, Lowe EK, Lhomond G, Besnardeau L, Le Gras S, Ye T, Gavriouchkina D, Russo R, Costa C, Zito F, Anello L, Nicosia A, Ragusa MA, Pascual M, Molina MD, Chessel A, Di Carlo M, Turon X, Copley RR, Exposito J-Y, Martinez P, Cavalieri V, Ben Tabou de Leon S, Croce J, Oliveri P, Matranga V, Di Bernardo M, Morales J, Cormier P, GeneviŠve A-M, Aury JM, Barbe V, Wincker P, Arnone MI, Gache C and Lepage T
Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea
Martin G, Cottin A, Baurens FC, Labadie K, Hervouet C, Salmon F, Paulo-de-la-Reberdiere N, Van den Houwe I, Sardos J, Aury JM, D'Hont A and Yahiaoui N
A robust approach to estimate relative phytoplankton cell abundances from metagenomes
Pierella Karlusich JJ, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, de Vargas C and Bowler C
A robust approach to estimate relative phytoplankton cell abundances from metagenomes
Pierella Karlusich JJ, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, de Vargas C and Bowler C
Editorial: Cancer and nutrients: new chemicals, signals, and biomarker-based therapy
Qin XY, Mendoza-Parra MA and Shirakami Y
Distinct Energy-Coupling Factor Transporter Subunits Enable Flavin Acquisition and Extracytosolic Trafficking for Extracellular Electron Transfer in Listeria monocytogenes
Rivera-Lugo R, Huang S, Lee F, Meheust R, Iavarone AT, Sidebottom AM, Oldfield E, Portnoy DA and Light SH
Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform
Roche D, Calteau A and Vallenet D
Is a dissipation half-life of 5 years for chlordecone in soils of the French West Indies relevant?
Saaidi PL, Grunberger O, Samouelian A, Le Roux Y, Richard A, Devault DA, Feidt C, Benoit P, Evrard O, Imfeld G, Mouvet C and Voltz M
SulfAtlas, the sulfatase database: state of the art and new developments
Stam M, Lelievre P, Hoebeke M, Corre E, Barbeyron T and Michel G
Early dispersal of domestic horses into the Great Plains and northern Rockies
Taylor WTT, Librado P, American Horse CJ, Shield Chief Gover C, Arterberry J, Afraid of Bear-Cook AL, Left Heron H, Yellow Hair RM, Gonzalez M, Means B, High Crane S, Yellow Bull WW, Dull Knife B, Afraid of Bear A, Tecumseh Collin C, Ward C, Pasqual TA, Chauvey L, Tonasso-Calviere L, Schiavinato S, Seguin-Orlando A, Fages A, Khan N, Der Sarkissian C, Liu X, Wagner S, Leonard BG, Manzano BL, O'Malley N, Leonard JA, Bernaldez-Sanchez E, Barrey E, Charliquart L, Robbe E, Denoblet T, Gregersen K, Vershinina AO, Weinstock J, Rajic Sikanjic P, Mashkour M, Shingiray I, Aury JM, Perdereau A, Alquraishi S, Alfarhan AH, Al-Rasheid KAS, Trbojevic Vukicevic T, Buric M, Sauer E, Lucas M, Brenner-Coltrain J, Bozell JR, Thornhill CA, Monagle V, Perri A, Newton C, Hall WE, Conver JL, Le Roux P, Buckser SG, Gabe C, Belardi JB, Barron-Ortiz CI, Hart IA, Ryder C, Sponheimer M, Shapiro B, Southon J, Hibbs J, Faulkner C, Outram A, Patterson Rosa L, Palermo K, Sole M, William A, McCrory W, Lindgren G, Brooks S, Eche C, Donnadieu C, Bouchez O, Wincker P, Hodgins G, Trabert S, Bethke B, Roberts P, Jones EL, Running Horse Collin Y and Orlando L
Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood
Wagner S, Seguin-Orlando A, Leple JC, Leroy T, Lalanne C, Labadie K, Aury JM, Poirier S, Wincker P, Plomion C, Kremer A and Orlando L
Priorities for ocean microbiome research
Abreu A, Bourgois E, Gristwood A, Trouble R, Acinas SG, Bork P, Boss E, Bowler C, Budinich M, Chaffron S, de Vargas C, Delmont TO, Eveillard D, Guidi L, Iudicone D, Kandels S, Morlon H, Lombard F, Pepperkok R, Karlusich JJP, Piganeau G, Regimbeau A, Sommeria-Klein G, Stemmann L, Sullivan MB, Sunagawa S, Wincker P, Zablocki O, Arendt D, Bilic J, Finn R, Heard E, Rouse B, Vamathevan J, Casotti R, Cancio I, Cunliffe M, Kervella AE, Kooistra W, Obst M, Pade N, Power DM, Santi I, Tsagaraki TM, Vanaverbeke J, Tara Ocean F, Tara O, European Mol Biol Lab E and European Marine Biol Resource C
Providing a phylogenetic framework for trait-based analyses in brown algae: Phylogenomic tree inferred from 32 nuclear protein-coding sequences
Akita S, Vieira C, Hanyuda T, Rousseau F, Cruaud C, Couloux A, Heesch S, Cock JM and Kawai H
"The complete genome sequence of elite bread wheat cultivar, ""Sonmez"""
Akpinar BA, Leroy P, Watson-Haigh N, Baumann U, Barbe V and Budak H
Postglacial species arrival and diversity buildup of northern ecosystems took millennia
Alsos IG, Rijal DP, Ehrich D, Karger DN, Yoccoz NG, Heintzman PD, Brown AG, Lammers Y, Pellissier L, Alm T, Brathen KA, Coissac E, Merkel MKF, Alberti A, Denoeud F, Bakke J and PhyloNorway C
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
Aury JM, Engelen S, Istace B, Monat C, Lasserre-Zuber P, Belser C, Cruaud C, Rimbert H, Leroy P, Arribat S, Dufau I, Bellec A, Grimbichler D, Papon N, Paux E, Ranoux M, Alberti A, Wincker P and Choulet F
Structure and Mutation of the Native Amine Dehydrogenase MATOUAmDH2
Bennett M, Ducrot L, Vergne-Vaxelaire C and Grogan G
Epigenomic and structural events preclude recombination in Brassica napus
Boideau F, Richard G, Coriton O, Huteau V, Belser C, Deniot G, Eber F, Falentin C, de Carvalho JF, Gilet M, Lode-Taburel M, Maillet L, Morice J, Trotoux G, Aury JM, Chevre AM and Rousseau-Gueutin M
Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection
Canaguier A, Guilbaud R, Denis E, Magdelenat G, Belser C, Istace B, Cruaud C, Wincker P, Le Paslier MC, Faivre-Rampant P and Barbe V
Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment
Carbonne C, Labadie K, Cruaud C, Brun E, Barbe V and Monnet C
Chelonus inanitus bracovirus encodes lineage-specific proteins and truncated immune IkappaB-like factors
Cerqueira de Araujo A, Josse T, Sibut V, Urabe M, Asadullah A, Barbe V, Nakai M, Huguet E, Periquet G and Drezen JM
A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source
Chaignaud P, Gruffaz C, Borreca A, Fouteau S, Kuhn L, Masbou J, Rouy Z, Hammann P, Imfeld G, Roche D and Vuilleumier S
Biodegradability under marine conditions of bio-based and petroleum-based polymers as substitutes of conventional microparticles
Cheng J, Eyheraguibel B, Jacquin J, Pujo-Pay M, Conan P, Barbe V, Hoypierres J, Deligey G, Halle AT, Bruzaud S, Ghiglione J-F and Meistertzheim A-L
Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France
Clavel B, Lepetz S, Chauvey L, Schiavinato S, Tonasso-Calviere L, Liu XX, Fages A, Khan N, Seguin-Orlando A, Sarkissian CD, Clavel P, Estrada O, Alioglu D, Gaunitz C, Aury JM, Barme M, Bodu P, Olive M, Bignon-Lau O, Castel JC, Boudadi-Maligne M, Boulbes N, Bourgois A, Decanter F, Foucras S, Frere S, Gardeisen A, Jouanin G, Mela C, Morand N, Espinet AN, Perdereau A, Putelat O, Riviere J, Robin O, Salin M, Valenzuela-Lamas S, Vallet C, Yvinec JH, Wincker P and Orlando L
Evidence of coupled autotrophy and heterotrophy on plastic biofilms and its influence on surrounding seawater
Conan P, Philip L, Ortega-Retuerta E, Odobel C, Duran C, Pandin C, Giraud C, Meistertzheim AL, Barbe V, Ter Hall A, Pujo-Pay M and Ghiglione JF
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Cordier T, Angeles IB, Henry N, Lejzerowicz F, Berney C, Morard R, Brandt A, Cambon-Bonavita MA, Guidi L, Lombard F, Arbizu PM, Massana R, Orejas C, Poulain J, Smith CR, Wincker P, Arnaud-Haond S, Gooday AJ, de Vargas C and Pawlowski J
Selection drives convergent gene expression changes during transitions to co-sexuality in haploid sexual systems
Cossard GG, Godfroy O, Nehr Z, Cruaud C, Cock JM, Lipinska AP and Coelho SM
In vitro Applications of the Terpene Mini-Path 2.0
Couillaud J, Amouric A, Courvoisier-Dezord E, Leydet L, Schweitzer N, Rosso MN, Hage H, Loussouarn-Yvon M, Vincentelli R, Petit JL, de Berardinis V, Attolini M, Maresca M, Duquesne K and Iacazio G
The expanding Asgardÿarchaea and their elusive relationships with Eukarya
Da Cunha V, Ga‹a M and Forterre P
Giant Viruses Encode Actin-Related Proteins
Da Cunha V, Gaia M, Ogata H, Jaillon O, Delmont TO and Forterre P
Genomic differentiation of three pico-phytoplankton species in the Mediterranean Sea
Da Silva O, Ayata SD, Ser-Giacomi E, Leconte J, Pelletier E, Fauvelot C, Madoui MA, Guidi L, Lombard F and Bittner L
Genomic Instability in Somatic Hybridization between Poncirus and Citrus Species Aiming to Create New Rootstocks
Dambier D, Barantin P, Boulard G, Costantino G, Mournet P, Perdereau A, Morillon R and Ollitrault P
A roadmap for the functional annotation of protein families: a community perspective
de Crecy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM and Xu J
A roadmap for the functional annotation of protein families: a community perspective
de Crecy-Lagard V, de Hegedus RA, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding YS, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu ZY, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM and Xu J
Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale
de Vargas C, Le Bescot N, Pollina T, Henry N, Romac S, Colin S, Ha‰ntjens N, Carmichael M, Berger C, Le Guen D, Decelle J, Mah‚ F, Poulain J, Malpot E, Beaumont C, Hardy M, Guiffant D, Probert I, Gruber DF, Allen AE, Gorsky G, Follows MJ, Pochon X, Troubl‚ R, Cael BB, Lombard F, Boss E, Prakash M, tPPct, Bazile R, Boss E, Bourdin G, Cael B, Casati R, Colin Sb, Vargas Cd, Gorsky G, Guiffant D, Haentjens N, Henry N, Larson A, Bescot NL, Lombard F, Mirambeau G, Moulin Cm, Oddone A, Prakash M, Prazuck C, Raimbault V, Trellu C and Trouble? R
Access to the Syn diastereomers of cryptophane cages using HFIP
Della-Negra O, Cirillo Y, Brotin T, Dutasta JP, Saaidi PL, Chatelet B and Martinez A
Genetic and biocatalytic basis of formate dependent growth of Escherichia coli strains evolved in continuous culture
Delmas VA, Perchat N, Monet O, Foure M, Darii E, Roche D, Dubois I, Pateau E, Perret A, Doring V and Bouzon M
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Delmont TO, Gaia M, Hinsinger DD, Fr‚mont P, Vanni C, Fernandez-Guerra A, Eren AM, Kourlaiev A, d'Agata L, Clayssen Q, Villar E, Labadie K, Cruaud C, Poulain J, Da Silva C, Wessner M, Noel B, Aury J-M, Sunagawa S, Acinas SG, Bork P, Karsenti E, Bowler C, Sardet C, Stemmann L, de Vargas C, Wincker P, Lescot M, Babin M, Gorsky G, Grimsley N, Guidi L, Hingamp P, Jaillon O, Kandels S, Iudicone D, Ogata H, Pesant S, Sullivan MB, Not F, Lee K-B, Boss E, Cochrane G, Follows M, Poulton N, Raes J, Sieracki M, Speich S, de Vargas C, Bowler C, Karsenti E, Pelletier E, Wincker P and Jaillon O
Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean
Delmont TO, Pierella Karlusich JJ, Veseli I, Fuessel J, Eren AM, Foster RA, Bowler C, Wincker P and Pelletier E
Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome
Denamur E, Condamine B, Esposito-Farese M, Royer G, Clermont O, Laouenan C, Lefort A, de Lastours V, Galardini M, Colibafi and Septicoli
Diversity and ecological footprint of Global Ocean RNA viruses
Dominguez-Huerta G, Zayed AA, Wainaina JM, Guo JR, Tian FN, Pratama AA, Bolduc B, Mohssen M, Zablocki O, Pelletier E, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J, Coordinators TO, Bowler C, Eveillard D, Guidi L, Karsenti E, Kuhn JH, Ogata H, Wincker P, Culley A, Chaffron S and Sullivan MB
The banana genome hub: a community database for genomics in the Musaceae
Droc G, Martin G, Guignon V, Summo M, Semp‚r‚ G, Durant E, Soriano A, Baurens F-C, Cenci A, Breton C, Shah T, Aury J-M, Ge X-J, Harrison PH, Yahiaoui N, D?Hont A and Rouard M
Expanding the substrate scope of native amine dehydrogenases through in silico structural exploration and targeted protein engineering
Ducrot L, Bennett M, Andr‚-Leroux G, Elis‚e E, Marynberg S, Fossey-Jouenne A, Zaparucha A, Grogan G and Vergne-Vaxelaire C
Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium
Dziuba MV, Paulus A, Schramm L, Awal RP, Posfai M, Monteil CL, Fouteau S, Uebe R and Schuler D
Photobiocatalytic Oxyfunctionalization with High Reaction Rate using a Baeyer-Villiger Monooxygenase from Burkholderia xenovorans in Metabolically Engineered Cyanobacteria
Erdem E, Malihan-Yap L, Assil-Companioni L, Grimm H, Barone GD, Serveau-Avesque C, Amouric A, Duquesne K, de Berardinis V, Allahverdiyeva Y, Alphand V and Kourist R
Complete Genome Sequence of Tepidibacter sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam
Fouteau S, Van VB, Rouy Z, Beraud M, Cruaud C, Cayol JL, Chifflet S, Van TC, The TP, Vallenet D, Oliveira PH, Mari X and Pradel N
Restructuring of plankton genomic biogeography in the surface ocean under climate change
Fremont P, Gehlen M, Vrac M, Leconte J, Delmont TO, Wincker P, Iudicone D and Jaillon O
Diversity and Evolution of Pigment Types in Marine Synechococcus Cyanobacteria
Grebert T, Garczarek L, Daubin V, Humily F, Marie D, Ratin M, Devailly A, Farrant GK, Mary I, Mella-Flores D, Tanguy G, Labadie K, Wincker P, Kehoe DM and Partensky F
Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence
Gu‚rin N, Ciccarella M, Flamant E, Fr‚mont P, Mangenot S, Istace B, Noel B, Belser C, Bertrand L, Labadie K, Cruaud C, Romac S, Bachy C, Gachenot M, Pelletier E, Alberti A, Jaillon O, Wincker P, Aury J-M and Carradec Q
Viral origin of eukaryotic type IIA DNA topoisomerases
Guglielmini J, Gaia M, Da Cunha V, Criscuolo A, Krupovic M and Forterre P
The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering
Herisson J, Duigou T, du Lac M, Bazi-Kabbaj K, Sabeti Azad M, Buldum G, Telle O, El Moubayed Y, Carbonell P, Swainston N, Zulkower V, Kushwaha M, Baldwin GS and Faulon JL
Genome-Wide TSS Distribution in Three Related Clostridia with Normalized Capp-Switch Sequencing
Hocq R, Jagtap S, Boutard M, Tolonen AC, Duval L, Pirayre A, Ferreira NL and Wasels F
Pyruvate kinase, a metabolic sensor powering glycolysis, drives the metabolic control of DNA replication
Horemans S, Pitoulias M, Holland A, Pateau E, Lechaplais C, Ekaterina D, Perret A, Soultanas P and Janniere L
Activating Silent Glycolysis Bypasses in <i>Escherichia coli</i>
Iacometti C, Marx K, H”nick M, Biletskaia V, Schulz-Mirbach H, Dronsella B, Satanowski A, Delmas VA, Berger A, Dubois I, Bouzon M, D”ring V, Noor E, Bar-Even A and Lindner SN
Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV-1
Jacoby C, Ebenau-Jehle C, Saum K, Jehmlich N, von Bergen M, Bruls T and Boll M
Synthesis of Chiral Amines via a Bi-Enzymatic Cascade Using an Ene-Reductase and Amine Dehydrogenase
Jongkind EPJ, Fossey-Jouenne A, Mayol O, Zaparucha A, Vergne-Vaxelaire C and Paul CE
A robust approach to estimate relative phytoplankton cell abundances from metagenomes
Karlusich JJP, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, de Vargas C and Bowler C
Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans
Lang-Yona N, Flores JM, Haviv R, Alberti A, Poulain J, Belser C, Trainic M, Gat D, Ruscheweyh HJ, Wincker P, Sunagawa S, Rudich Y, Koren I and Vardi A
Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei
Lu YAT, Ruault S, Daguin-Thiebaut C, Castel J, Bierne N, Broquet T, Wincker P, Perdereau A, Arnaud-Haond S, Gagnaire PA, Jollivet D, Hourdez S and Bonhomme F
The Population Genomics of Increased Virulence and Antibiotic Resistance in Human Commensal Escherichia coli over 30 Years in France
Marin J, Clermont O, Royer G, Mercier-Darty M, Decousser JW, Tenaillon O, Denamur E and Blanquart F
Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea
Martin G, Cottin A, Baurens FC, Labadie K, Hervouet C, Salmon F, Paulo-de-la-Reberdiere N, Van den Houwe I, Sardos J, Aury JM, D'Hont A and Yahiaoui N
Genome-Wide Transcription Start Sites Mapping in Methylorubrum Grown with Dichloromethane and Methanol
Maucourt B, Roche D, Chaignaud P, Vuilleumier S and Bringel F
Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups
Meheust R, Castelle CJ, Jaffe AL and Banfield JF
A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs
Mishra B, Ulaszewski B, Meger J, Aury J-M, Bodenes C, Lesur-Kupin I, Pfenninger M, Da Silva C, Gupta DK, Guichoux E, Heer K, Lalanne C, Labadie K, Opgenoorth L, Ploch S, Le Provost G, Salse J, Scotti I, Wotzel S, Plomion C, Burczyk J and Thines M
Magnetosome proteins belong to universal protein families involved in many cell processes
Monteil CL, Vallenet D, Schuler D and Lefevre CT
Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros
Nef C, Madoui MA, Pelletier E and Bowler C
A versatile active learning workflow for optimization of genetic and metabolic networks
Pandi A, Diehl C, Kharrazi AY, Scholz SA, Bobkova E, Faure L, Nattermann M, Adam D, Chapin N, Foroughijabbari Y, Moritz C, Paczia N, Cortina NS, Faulon JL and Erb TJ
Biosynthetic potential of the global ocean microbiome
Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlstrom CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, Larralde M, Carroll LM, Sanchez P, Zayed AA, Cronin DR, Acinas SG, Bork P, Bowler C, Delmont TO, Gasol JM, Gossert AD, Kahles A, Sullivan MB, Wincker P, Zeller G, Robinson SL, Piel J and Sunagawa S
Obligate sexual reproduction of a homothallic fungus closely related to the Cryptococcus pathogenic species complex
Passer AR, Clancey SA, Shea T, David-Palma M, Averette AF, Boekhout T, Porcel BM, Nowrousian M, Cuomo CA, Sun S, Heitman J and Coelho MA
Characterization of a novel beta-alanine biosynthetic pathway consisting of promiscuous metabolic enzymes
Perchat N, Dubois C, Mor-Gautier R, Duquesne S, Lechaplais C, Roche D, Fouteau S, Darii E and Perret A
In-depth characterization of denitrifier communities across different soil ecosystems in the tundra
Pessi IS, Viitamaki S, Virkkala AM, Eronen-Rasimus E, Delmont TO, Marushchak ME, Luoto M and Hultman J
ORTHOSKIM: In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications
Pouchon C, Boyer F, Roquet C, Denoeud F, Chave J, Coissac E, Alsos IG, Lavergne S, PhyloAlps C and PhyloNorway C
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