MUSCLE (3.8) multiple sequence alignment HS_haplotype1 AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG HS_haplotype2 AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG HS_assemblymutate AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG ************************************************************ HS_haplotype1 GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA HS_haplotype2 GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA HS_assemblymutate GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA ************************************************************ HS_haplotype1 ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC HS_haplotype2 ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC HS_assemblymutate ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC ************************************************************ HS_haplotype1 ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT HS_haplotype2 ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT HS_assemblymutate ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT ************************************************************ HS_haplotype1 CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT HS_haplotype2 CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT HS_assemblymutate CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT ************************************************************ HS_haplotype1 TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC HS_haplotype2 TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC HS_assemblymutate TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC ************************************************************ HS_haplotype1 AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG HS_haplotype2 AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG HS_assemblymutate AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG ************************************************************ HS_haplotype1 TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG HS_haplotype2 TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG HS_assemblymutate TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG ************************************************************ HS_haplotype1 CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA HS_haplotype2 CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA HS_assemblymutate CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA ************************************************************ HS_haplotype1 GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC HS_haplotype2 GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC HS_assemblymutate GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC ************************************************************ HS_haplotype1 ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC HS_haplotype2 ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC HS_assemblymutate ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC ************************************************************ HS_haplotype1 CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC HS_haplotype2 CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC HS_assemblymutate CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC ************************************************************ HS_haplotype1 CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA HS_haplotype2 CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA HS_assemblymutate CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA ************************************************************ HS_haplotype1 TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA HS_haplotype2 TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA HS_assemblymutate TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA ************************************************************ HS_haplotype1 TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC HS_haplotype2 TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC HS_assemblymutate TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC ************************************************************ HS_haplotype1 AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA HS_haplotype2 AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA HS_assemblymutate AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA ************************************************************ HS_haplotype1 TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTCTTAGGTATTG HS_haplotype2 TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTTTTACGTATTG HS_assemblymutate TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTCTTAGGTATTG ************************************************* *** ****** HS_haplotype1 GCCTCCTTCTGTCATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT HS_haplotype2 GCCTCCTTCTGTGATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT HS_assemblymutate GCCTCCTTCTGTCATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT ************ *********************************************** HS_haplotype1 CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCAACAGGACATTGTATTTCTTCCT HS_haplotype2 CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCGACAGGACATTGTATTTCTTCCT HS_assemblymutate CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCAACAGGACATTGTATTTCTTCCT ************************************* ********************** HS_haplotype1 ATGGTTTTGAATTGGCCAAGGACATACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA HS_haplotype2 ATGGTTTTGAATTGGCTAAGGACAAACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA HS_assemblymutate ATGGTTTTGAATTGGCTAAGGACAAACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA **************** ******* *********************************** HS_haplotype1 ACTCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGAGT HS_haplotype2 AATCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGGGT HS_assemblymutate ACTCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGAGT * ******************************************************* ** HS_haplotype1 GAATATATGCTCTGCCCCTCCCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA HS_haplotype2 GAATATATCCTCGGCCCCTCCCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA HS_assemblymutate GAATATATCCTCGGCCCCTCTCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA ******** *** ******* *************************************** HS_haplotype1 CATCTCTGATCAAAATATCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT HS_haplotype2 CATCTCTGATCAAAATGTCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT HS_assemblymutate CATCTCTGATCAAAATATCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT **************** ******************************************* HS_haplotype1 CCCAGCAGTGCTGGACTACACGATAAACCTAGGCATTCTGGACGGGGCCGCGGCTAATTA HS_haplotype2 CCCAGCAGTGCTGGACTACTCGATAAACCTAGGCATTCTGGACGGGGCCGCGGCGAATTA HS_assemblymutate CCCAGCAGTGCTGGACTACTCGATAAACCTAGGCATTCTGGACGGGGCCGCGGCGAATTA ******************* ********************************** ***** HS_haplotype1 AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG HS_haplotype2 AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG HS_assemblymutate AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG ************************************************************ HS_haplotype1 GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAATTTTCACCTGTGTGATAAGGGG HS_haplotype2 GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAGTTTTCACCTGTGTGATAAGGGG HS_assemblymutate GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAGTTTTCACCTGTGTGATAAGGGG ************************************* ********************** HS_haplotype1 CCCAGCTACCTGTGTGTGCATTGTGATTTATTTTTGCATTGCACCGGAACTGACTGTATC HS_haplotype2 CCCAGCTACCTGTGTGTGCATTGTGATTTATTTTTGCATTGCACCGGAACTGACTGTATC HS_assemblymutate CCCAGCTACCTGTGTGTGCATTGTGATTTATTATTGCATTGCAGCGGAACTGACTGTATC ******************************** ********** **************** HS_haplotype1 TGGAATACTCTCTCAGCTGACAGCAGCCTCTATTGTCTAACAACCCAGGTGCAATCAGAG HS_haplotype2 TGGAATACTCTCTCAGCTGACAGCAGCCTCTGTTGTCTAACAACCCAGGTGCAATCAGAG HS_assemblymutate TGGAATACTCTCTCTGCTGACAGCAGCCTCTGTTGTCTAACAAGCCAGGTGCAATCAGAG ************** **************** *********** **************** HS_haplotype1 TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC HS_haplotype2 TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC HS_assemblymutate TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC ************************************************************ HS_haplotype1 TTTCCTCAGGACTGTGTTTCATGCGCTGTTTCTAGAAACACCAGCCCTGGGATCACAGTA HS_haplotype2 TTTCCTCAGGACTGTGTTTCATCCGCTGTTTCTAGAAACACCAGCCCTGGTATCAAAGTA HS_assemblymutate TTTCCTCAGGACTGTGTTTCATCCGCTGTTTCTAGAAACACCAGCCCTGGTATCAAAGTA ********************** *************************** **** **** HS_haplotype1 CGAGCCACCACCTAGGTCTAGACATGACCAAAACCAACTTAGAAAATATTTGAGACAGGA HS_haplotype2 CCAGCCACCACCTAGGTCTAGACATGACCAAGACCAACTTAGAAAATATTTGAGACAGGA HS_assemblymutate CCAGCCACCACCTAGGTCTAGACATGACCAAAACCAACTTAGAAAATATTTGAGACAGGA * ***************************** **************************** HS_haplotype1 CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT HS_haplotype2 CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT HS_assemblymutate CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT ************************************************************ HS_haplotype1 CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCACCTGAGTCATTC HS_haplotype2 CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCAACTGAGTCATTC HS_assemblymutate CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCACCTGAGTCATTC ************************************************ *********** HS_haplotype1 GAGATGGGGATCCATGCCAACCCCTAAGGTCAGATGGGTCACCTCTCTGCAGGCATGGAT HS_haplotype2 GAGATGGGGATCCATGCCAACCCCTAAGGACAGATGGGTCACCTCTCTGCAGGCATGGAT HS_assemblymutate GAGATGGGGATCCATGCCAACCCCTAAGGACAGATGGGTCACCTCTCTGCAGGCATGGAT ***************************** ****************************** HS_haplotype1 GAAATATAAAAGAAACTGAGGTTGAATTAAGGAATGCCCTCCTCTGCATTTACTAATTTC HS_haplotype2 GAACTATAAAAGAAACTGAGGTTGAATTAAGGAATGCTCTCCTCTGCATTTACTAATTTC HS_assemblymutate GAAATATAAAAGAAACTGAGGTTGAATTAAGGAATGCCCTCCTCTGCATTTACTAATTTC *** ********************************* ********************** HS_haplotype1 ATCCTACTCTGTCTTGGAGGAATAGAAAAACTCCTAGTTGGACAACAGATTTTAGTAGAA HS_haplotype2 ATCCTACTCTGGCTAGGAGGAATAGAAAAACTCCTAGGTGGACAACAGATTTTAGTAGAA HS_assemblymutate ATCCTACTCTGGCTAGGAGGAATAGAAAAACTCCTAGGTGGACAACAGATTTTAGTAGAA *********** ** ********************** ********************** HS_haplotype1 GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCG HS_haplotype2 GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCA HS_assemblymutate GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCG *********************************************************** HS_haplotype1 GGGTTTTCATCCCCGAGAAATAAGACTAATTGGTCCCTGGAATGCTGGGCAGATCGCGAT HS_haplotype2 GGGTTTTCATCCCCGAGAAATAAGGCTAATTGATCCCTGGAATGCTGGGCGGATCGCGAT HS_assemblymutate GGGTTTTCATCCCCGAGAAATAAGGCTAATTGATCCCTGGAATGCTGGGCGGATCGCGAT ************************ ******* ***************** ********* HS_haplotype1 CTGCCCATGCTAATGGAGAAGAAAGTATTTGGCTTGGGCAAGGTACCTGAGGAGGAGCTA HS_haplotype2 CTGCCCATGCTTATGGAGAAGAAAGTATTTGGCTTGGGCCATGTACCTGAGGAGGAGCTA HS_assemblymutate CTGCCCATGCTAATGGAGAAGAAAGTATTTGGCTTGGGCAAGGTACCTGAGGAGGAGCTA *********** *************************** * ****************** HS_haplotype1 TCAAACATCTTAGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTAGAGCTTTTC HS_haplotype2 TCAAACATCTTGGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTTGAGCTTTTC HS_assemblymutate TCAAACATCTTGGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTTGAGCTTTTC *********** ************************************** ********* HS_haplotype1 TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG HS_haplotype2 TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG HS_assemblymutate TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG ************************************************************ HS_haplotype1 TGCGCGAGTAGTCCCTTCCTCTCTGTCATCCCAATCATGGATTTGTTTCCAGTTCAAGAC HS_haplotype2 TGCGCGAGTAGTCCCTTCCTCTCTGTCACCCCAATCATGGATTTGTTTGCAGTTCAAGAC HS_assemblymutate TGCGCGAGTAGTCCCTTCCTCTCTGTCACCCCAATCATGGATTTGTTTGCAGTTCAAGAC **************************** ******************* *********** HS_haplotype1 TTAGCAGGCTGGTTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT HS_haplotype2 TTAGCAGGCTGGGTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT HS_assemblymutate TTAGCAGGCTGGTTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT ************ *********************************************** HS_haplotype1 TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAA HS_haplotype2 TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAC HS_assemblymutate TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAC *********************************************************** HS_haplotype1 ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA HS_haplotype2 ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA HS_assemblymutate ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA ************************************************************ HS_haplotype1 AGAGAGGTCGGCTGCCACATATTTGCCCAGGGAATTTCAATGGGAGGGCGTGGTAGGCGG HS_haplotype2 AGAGAGGTCGGCTGCCACATATCTGCCCAGGGAATTTCAATGGGAGGGCATGGTAGGCGG HS_assemblymutate AGAGAGGTCGGCTGCCACATATCTGCCCAGGGAATTTCAATGGGAGGGCATGGTAGGCGG ********************** ************************** ********** HS_haplotype1 AAGAAGGCACCTCTGGTCTAGCGTTTTAAAACAGAATCGCTGTTCCCCAGGGTCCTAGCC HS_haplotype2 AAGAAGGCACCTCTGGTCTAACGTTTTAAAACAGAATCGCACCTCCCCAGGGTCCTAGCC HS_assemblymutate AAGGAGCCACCTCTGGTCTAGCGTTTTAAAACAGAATCGCTGTTCCCCAGGGTCCTAGCC *** ** ************* ******************* ***************** HS_haplotype1 AAGCATGAATATTTGCTGCCACAACCAAGGCTCAAGACTCTGAATTGACTCTCGACCAGC HS_haplotype2 AAGCATGAATATTTGCTGCCACAACCAAGGCTCAAGACTCTGAATTGACTCTCGACCAGC HS_assemblymutate AAGCATGAATATTTGCTGCCAAAACCAAGACGCAAGACTATGAACTGACTCTTGACCAGC ********************* ******* * ******* **** ******* ******* HS_haplotype1 GCATATATTTCAAATTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA HS_haplotype2 GCATATATTTCAAATTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA HS_assemblymutate GCATATATTTCAAGTTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA ************* ********************************************** HS_haplotype1 GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA HS_haplotype2 GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA HS_assemblymutate GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA ************************************************************ HS_haplotype1 AAGAAATGTGGACCAGGGAGCTAATCGATGTGAGACTCTAGGAGAGGGGTCTCCATTAGA HS_haplotype2 AAGAAATGTGGACCAGGGAGCTAATCGACGTGAGACTCTAGGAGAGGGGTCTCCATTAGA HS_assemblymutate AAGAAATGTGGACCAGGGAGCTAATCGATGTGAGACTCTAGGAGAGGGGTCTCCATTAGA **************************** ******************************* HS_haplotype1 GACAGGAGATGTTTTAGAGGCCCAGCTAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA HS_haplotype2 GACAGGAGATGTTTTAGAGGCCCAGCTAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA HS_assemblymutate GACAGGAGATGTTTTAAAGGCCCAGCCAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA **************** ********* ********************************* HS_haplotype1 CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA HS_haplotype2 CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA HS_assemblymutate CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA ************************************************************ HS_haplotype1 TTATTAATTTTTTCTGTAAGTGCTGACTTCATAAAGATAAATTATTATCCGCCTACAGGC HS_haplotype2 TTATTAATTTTTTCTGTAAGTGCTGACTTCATAAAGATAAATTATTATCCGCCTACAGGC HS_assemblymutate TTATTAATTTTTTCTGTAAGTGCTGACTTCATAATGATAAAATATTATCCGCCTACAGGC ********************************** ****** ****************** HS_haplotype1 TGGAGAATGTTTGGATATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCC HS_haplotype2 TGGAGAATGTTTGGAAATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCA HS_assemblymutate TGGAGAATGTTTGGATATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCC *************** ******************************************* HS_haplotype1 GGATTGCTTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA HS_haplotype2 GGATTGCCTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA HS_assemblymutate GGATTGCTTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA ******* **************************************************** HS_haplotype1 GAAAAAATGGGCATTTAAGTCCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC HS_haplotype2 GAAAAAATGGGCATTTAAGACCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC HS_assemblymutate GAAAAAATGGGCATTTAAGTCCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC ******************* **************************************** HS_haplotype1 CCAAGCTGTGGACAGGTCACTGAGAGGTATATGTTTTAACTGCAAACTTGTATTAATTGG HS_haplotype2 CCAAGCTGTGGACAGGTCACTGAGAGGTATATGTTTTAACTGCAATCTTGTATTAATCGG HS_assemblymutate CCAAGCTGTGGACAGGTCACTGAGAGGTCTATGTCTTAACTGCAATCTTGTATTAATCGG **************************** ***** ********** *********** ** HS_haplotype1 GTGACTGACTTGAGGCTGTCACTGTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG HS_haplotype2 GTGACTGACTTGAGGCTGTCACTTTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG HS_assemblymutate GTGACTGACTTGAGGCTGTCACTGTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG *********************** ************************************ HS_haplotype1 TGCCCTCCTTCGGGTGAGCTTGGGTCACTACTACAGGAAGAATGAGTATAAATTGCTGAG HS_haplotype2 TGCCCTCCTTCGGGTGACCTTGGGACACTACTACAGGAAGAATGAGTATAAATTGCTGAG HS_assemblymutate TGCCCTCCTTCGGGTGACCTTGGGACACTACTACAGGAAGAATGAGTATAAATTGCTGAG ***************** ****** *********************************** HS_haplotype1 TTTCATGGATCTGACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA HS_haplotype2 TTTCATGGATTTCACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA HS_assemblymutate TTTCATGGATCTGACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA ********** * *********************************************** HS_haplotype1 TTCTTCTCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG HS_haplotype2 TTCTTCCCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG HS_assemblymutate TTCTTCCCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG ****** ***************************************************** HS_haplotype1 TAAATTCTTCTCCCCGTCTACCACGGGTTTTGAACTGATGCGCTCAGTACTCAGATGGCT HS_haplotype2 TAAATTCTTCACCCCTTCTACCACGGGTTTTGAACTGATGGGCTCAGTACTCAGATGGCA HS_assemblymutate TAAATTCTTCTCCCCGTCTACCACGGGTTTTGAACTGATGCGCTCAGTACTCAGATGGCT ********** **** ************************ ****************** HS_haplotype1 AGATGTTTAAACACCACATTTCTTGCCTCAATAACTGGTCAGGGGTAGTGGAGAGGGTTT HS_haplotype2 AGGTGTTTAAACACCACATTTCTTGCCTCAATTACTGGTCTGGGGTAGTGGAGAGGGTTT HS_assemblymutate AGATGTTTAAACACCACATTTCTTGCCTCAATTACTGGTCTGGGGTAGTGGAGAGGGTTT ** ***************************** ******* ******************* HS_haplotype1 GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACAGA HS_haplotype2 GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACGGA HS_assemblymutate GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACAGA ********************************************************* ** HS_haplotype1 TGAACCCTATGCCATTCTTATACATGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA HS_haplotype2 TGAACCCTATGCCATTCTTATACAAGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA HS_assemblymutate TGAACCCTATGCCATTCTTATACATGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA ************************ *********************************** HS_haplotype1 CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATTTTTTGTCTGTATCTGTTAACTTCA HS_haplotype2 CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATCTTTTGTCTGTATCTGTTAACTTCA HS_assemblymutate CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATTTTTTGTCTGTATCTGTTAACTTCA *********************************** ************************ HS_haplotype1 GGCAAATCAAAAAACATGGGGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC HS_haplotype2 GGCAAATCAAAAAACATGGGGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC HS_assemblymutate GGCAAATCGGAAAACATGGCGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC ******** ********* **************************************** HS_haplotype1 ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG HS_haplotype2 ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG HS_assemblymutate ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG ************************************************************ HS_haplotype1 TGCCTTAGTTAGCTATAATAGGAGCAGCTACTCATTTGACACATGATTAAACGAATGCAT HS_haplotype2 TGCCTTAGTTAGCTATAATAGGAGCTGCTACTCATTTGACACATGTTTAAACGAATGCAT HS_assemblymutate TGCCTTAGTTAGCTATAATAGGAGCTGCTACTCATTTGACACATGTTTAAACGAATGCAT ************************* ******************* ************** HS_haplotype1 AGACCCCCATTTCAACTCAGGTGGCTAATATGGTAAACCTATTTGTATGACCTTGGTTTG HS_haplotype2 AGACCCCCATTTCAACTCAGGTGGCTAATATGGTTAACCTATTTGTATGACCTGGGTTTG HS_assemblymutate AGACCCCCATTTCAACTCAGGTGGCTAATATGGTAAACCTATTTGTATGACCTTGGTTTG ********************************** ****************** ****** HS_haplotype1 TCCCACTGCAAACGGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT HS_haplotype2 TCCCCCTGCAAACAGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT HS_assemblymutate TCCCCCTGCAAACAGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT **** ******** ********************************************** HS_haplotype1 GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCACCAGTTCCCGAGTAT HS_haplotype2 GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCATCAGTTCCCGAGTAT HS_assemblymutate GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCACCAGTTCCCGAGTAT ********************************************* ************** HS_haplotype1 CTAAAAAATGTCTCACACTCTCTTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT HS_haplotype2 CTAAAAAATGTCTCACACTTTCCTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT HS_assemblymutate CTAAAAAATGACTCACTCTTTCCTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT ********** ***** ** ** ************************************* HS_haplotype1 CAAAGTATTATAATGGCCCAAATAAGCATACAGGAGGCAACAGACAGGGGTTAGCCGCAT HS_haplotype2 CAAAGTATTATAATGGCCCAAATAAGCATACAGGAGGCAACAGAAAGGGGTTAGCCGCAT HS_assemblymutate CAAAGTATTATAATAGCCCAGATAAGCATACAGGAGGCAACAGACAGGGGTTAGCCGCAT ************** ***** *********************** *************** HS_haplotype1 GTGGGAGGTAATATACTACTTGCCTCTTCATTTAAACATATGAGATCTTGGTAAGTCTAT HS_haplotype2 GTGGGAGGTAATATACTATTTGCCTCTTCATTTAAACATATGATATCTTGGTAAGTCTAT HS_assemblymutate GTGGGAGGTAATATACTATTTGCCTCTTCATTTAAACATATGATATCTTGGAAAGTCAAT ****************** ************************ ******* ***** ** HS_haplotype1 TATCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA HS_haplotype2 TACCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA HS_assemblymutate TATCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA ** ********************************************************* HS_haplotype1 TGTGGCGCTCTGCAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG HS_haplotype2 TGTGGCGCTCTGTAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG HS_assemblymutate TGTGGCGCTCTGTAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG ************ *********************************************** HS_haplotype1 CCTCACCTTAGAACGACTTTCTCAATTCTCCCTGACGCCCTAACATGTGGGTGAGGCTTT HS_haplotype2 CCTCACCTTAGAACCACTTTCTCAATTCTCCCTGACGCCCTAACATGTGGGTGAGCCTTT HS_assemblymutate CCTCACCTTAGAACGACTTTCTCAATTCTCCCTGACGCCCTAACATGTCGGAGAGGCTTT ************** ********************************* ** *** **** HS_haplotype1 ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCGCTGGGAACTTAGCC HS_haplotype2 ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCTCTGGGAACTTAGCC HS_assemblymutate ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCTCTGGGAACTTAGCC ********************************************* ************** HS_haplotype1 TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT HS_haplotype2 TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT HS_assemblymutate TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT ************************************************************ HS_haplotype1 GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT HS_haplotype2 GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT HS_assemblymutate GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT ************************************************************ HS_haplotype1 AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC HS_haplotype2 AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC HS_assemblymutate AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC ************************************************************ HS_haplotype1 TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCATAGTAAGTA HS_haplotype2 TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCCTAGTAAGTA HS_assemblymutate TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCCTAGTAAGTA ************************************************** ********* HS_haplotype1 CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA HS_haplotype2 CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA HS_assemblymutate CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA ************************************************************ HS_haplotype1 GCCAAAGTGCTGAGGTCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAGTCGAG HS_haplotype2 GCCAAAGTGCTGAGGCCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAATAGAG HS_assemblymutate GCCAAAGTGCTGAGGCCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAATAGAG *************** ************************************** * *** HS_haplotype1 CGATTTAGCCATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT HS_haplotype2 CGATTTAGCTATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT HS_assemblymutate CGATTTAGCTATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT ********* ************************************************** HS_haplotype1 GGGGACTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCTTCTTAAACAAATTAT HS_haplotype2 GGGGGCTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCATCTTAAAAAAATTAT HS_assemblymutate GGGGGCTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCATCTTAAAAAAAGTAT **** *************************************** ******* *** *** HS_haplotype1 CTTTGAATTTTCTATTCACTTGCTTGTTCAAACCATTATTGTGGCCAGTTGAGACATAAA HS_haplotype2 CTTTGAATTTTCTATACACTTGCTTGTTCAAACCATCATTGTGGCCAGTTGAGACATAAA HS_assemblymutate GTTTGAATTTTCTATTCACTTGATTGTTCAAACCCTTATTGTGGCCAGTTGAGACATAAA ************** ****** *********** * *********************** HS_haplotype1 TACTCTAACAAGGCAGGAGGAAGCAGTGACATGGGTGAGACCTACCTTGCCATATAGTAG HS_haplotype2 TACTCTAATAAGGCAGGAGGAAGCAGTGAGATGGGGGAGACCTACCTTGCCATATAGTAG HS_assemblymutate TACCCTAATAAGGCAGGAGGAAGCAGTGAGATGGGGGAGACCAACCTTGCCATATAGTAG *** **** ******************** ***** ****** ***************** HS_haplotype1 ACTGGTAAGGTTCTTATATGCGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC HS_haplotype2 ACTGGTAAGGTTCTTATATGCGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC HS_assemblymutate ACTGGTAAGGTTCTTATATGAGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC ******************** *************************************** HS_haplotype1 ACAAAATATGTTCTGCGCTGGCAATCTCTGGAGGGGACCATCAGTGAGTGAAAACATTAA HS_haplotype2 ACAAAATATGTTCTGTGCTGGCACTCTCTGGAGGGGACCATCAGTGGGTGAAAACATTAA HS_assemblymutate ACAAAATATGTTCTGTGCTGGCACTCTCTGGAGGGGACCATCAGTGGGTGAAAACATTAA *************** ******* ********************** ************* HS_haplotype1 GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCTACGTGGGAGAGGGAGTTCTAG HS_haplotype2 GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCGACGTGGGACAGGGAGTTCTAG HS_assemblymutate GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCTACGTGGGAGAGGGAGTTCTAG ************************************** ******** ************ HS_haplotype1 ATGTGGGTCTGTGCATTCCATGCTTGGAGTAAATATAGAACTATGCAAGAAGTGAATACA HS_haplotype2 ATGTGGGTCTGTGCGTTCCATACTAGGAGTATATATAGAACTATGCAAGAAGTGAATACA HS_assemblymutate ATGTGGGTCTGTGCGTTCCATACTAGGAGTATATATAGAACTATGCAAGAAGTGAATACA ************** ****** ** ****** **************************** HS_haplotype1 AAGTGAGAGGGAAATAAATCGTCGCTTAAAGAAAGTCAGGGCAGGACTGTGTCACCCAAC HS_haplotype2 AAGTGGGAGGGAAATAAATCGTCGCTTAAAGAGAGTCAGGGCAGGACTGTGTCACCCAAC HS_assemblymutate AAGTGAAAGGATAATAAATCGTCGCTTAAAGAAAGTCAGGGCAGGACTGTGTCACCCAAC ***** *** ******************** *************************** HS_haplotype1 GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAATCGCTCAATTTTG HS_haplotype2 GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAGTCGCACAATTTTG HS_assemblymutate GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAGTCGCACAATTTTG ********************************************** **** ******** HS_haplotype1 AATTGCTCAATTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA HS_haplotype2 AATTGCTCAACTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA HS_assemblymutate AATTGCTCAATTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA ********** ************************************************* HS_haplotype1 TCATCAGGTGATATGAATTGTTTTATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC HS_haplotype2 TCATCAGGTGATATGAATTGTTATATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC HS_assemblymutate TCATCAGGTGATATGAATTGTTATATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC ********************** ************************************* HS_haplotype1 AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT HS_haplotype2 AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT HS_assemblymutate AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT ************************************************************ HS_haplotype1 CAGCGACAGATATCAGACTCTGAAGGAACTTAGACTTCCTGTCACATTTTTAAGGGGCAA HS_haplotype2 CAGCGACAAATATCAGACTCTGAAGGAACTTAGACTTCCTGTCACATTTCTAAGGGGCAA HS_assemblymutate CAGCGACAAATATCAGACTCTGAAGGAACTTAGACTTCATGTCACAGTTCTAAGGGGCAA ******** ***************************** ******* ** ********** HS_haplotype1 GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCATTCTATTAAA HS_haplotype2 GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCACTCTGTTAAA HS_assemblymutate GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCATGCTATTAAA ************************************************** ** ***** HS_haplotype1 ACATAGGCATTTGGAAGGTTTTATATAGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC HS_haplotype2 AAATAGGCATTTGGAAGGTTATATATAGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC HS_assemblymutate AAATAGGCATTTGGAAGGTTATATATGGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC * ****************** ***** ********************************* HS_haplotype1 CCACAGCTGAAGATGCACTTTTTCCTTCTCATTTAGTGACAGGACTTTTTGGACTAAAAG HS_haplotype2 CCACAGCTGTAGATGCACTTTTTCCTTCTCATTTAGTGACAGGACTTTTTAGACTAAAAG HS_assemblymutate CCCCAGCTGAAGATGCACTTTTTCCTTCTCATATAGTGACAGGACTTTTTGGACTAAAAG ** ****** ********************** ***************** ********* HS_haplotype1 GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA HS_haplotype2 GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA HS_assemblymutate GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA ************************************************************ HS_haplotype1 TTACATTGCATCTGGATGTATATTCCGGGAGCGGAGTTTTCTTGCTCATCAAAAAACCGT HS_haplotype2 TTACATTCCATCTGTATGTATATTCCGGGAGCTGAGTTTTCTTGCTCATCAAAAGACAGT HS_assemblymutate TTACATTGCATCTGGATGTATATTCCGGGAGCGGAGTTTTCTTGCTCATCAAAAAACCGT ******* ****** ***************** ********************* ** ** HS_haplotype1 AGCTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT HS_haplotype2 AGTTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT HS_assemblymutate AGCTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT ** ********************************************************* HS_haplotype1 ATACTAGACAAACCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT HS_haplotype2 ATACTAGACAAGCCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT HS_assemblymutate ATACTAGACAAACCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT *********** ************************************************ HS_haplotype1 TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCCGGACAGGTGCCACCTTTCACCTAA HS_haplotype2 TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCAGGACAGGTGCCACCTTTCACCTAA HS_assemblymutate TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCAGGACAGGTGCCACCTTTCACCTAA *********************************** ************************ HS_haplotype1 AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA HS_haplotype2 AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA HS_assemblymutate AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA ************************************************************ HS_haplotype1 GCCTCATTCCCCCATCACGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAAATGGTGAAA HS_haplotype2 GCTTCATTCCCCCATCAGGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAGATGGTGAAA HS_assemblymutate GCTTCATTCCCCCATCAGGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAGATGGTGAAA ** ************** ******************************** ********* HS_haplotype1 ACTACAGTCATTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT HS_haplotype2 ACTACCGTCATTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT HS_assemblymutate ACTACAGTCGTTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT ***** *** ************************************************** HS_haplotype1 TGGCAACAAGAGAGAGGACATGCCTTGCTAATTTAATTTTTAAACCAGCTGCTGAGTTGC HS_haplotype2 TGGCAACAAGAGAGAGGACATGCCTTGCTAATTTAATTTTTAAACCAGCTGCTGAGTTGC HS_assemblymutate TGGCAACAAGAGAGAGGACATCCCTTGATAACTTAATTTTTAAACCAGCTGCTGAGTTGC ********************* ***** *** **************************** HS_haplotype1 CAGGTCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA HS_haplotype2 CAGGTCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA HS_assemblymutate CAGGGCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA **** ******************************************************* HS_haplotype1 AATCTGGGGGATTACCCGCCTGCCCCGCCCCCACCCAAAATATATATTTTTAATGGTGGC HS_haplotype2 AATCTGGGGGATTCCCCGCCTGCCCAGCCCCCACCCAAAATATATATTTTTAATGGTGGC HS_assemblymutate AATATGGAGGATTCCCCGCCTGCCCAGCCCCCACCCAAAATATATATTTTTAATGGTGGC *** *** ***** *********** ********************************** HS_haplotype1 AGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG HS_haplotype2 CGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG HS_assemblymutate AGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG *********************************************************** HS_haplotype1 GAGGTGGGAAGAACTTGATTGTGGTTCCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAG HS_haplotype2 GAGGTGGGGAGAACTTGATTGTGGTTCCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAA HS_assemblymutate GAGGTGGGGAGAACTTGATTGTCGTTTCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAA ******** ************* *** ******************************** HS_haplotype1 ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTTAGACCATGCCTGGCCTGTCGCCA HS_haplotype2 ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTCAGACCAGGCCTGGCCTGTCGCCA HS_assemblymutate ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTTAGACCATGCCTGGCCTGTCGCCA ************************************ ****** **************** HS_haplotype1 CATATCGCTGAAATCTCTCAGGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT HS_haplotype2 CATATCGCTGAAATCTCTCAAGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT HS_assemblymutate CATATCGCTGAAATCTCTCAGGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT ******************** *************************************** HS_haplotype1 GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA HS_haplotype2 GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA HS_assemblymutate GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA ************************************************************ HS_haplotype1 AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG HS_haplotype2 AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG HS_assemblymutate AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG ************************************************************ HS_haplotype1 GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCTGCTGGACTAGGAGAGGGATCTCTTCC HS_haplotype2 GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCAGCTGGACTAGGAGAGGGATCTCTTCC HS_assemblymutate GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCTGCTGGACTAGGAGAGGGATCTCTTCC ********************************* ************************** HS_haplotype1 CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG HS_haplotype2 CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG HS_assemblymutate CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG ************************************************************ HS_haplotype1 CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTTCAGCAGCTTTA HS_haplotype2 CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTCCAGCAGCTTTA HS_assemblymutate CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTTCAGCAGCTTTA ************************************************ *********** HS_haplotype1 GATTGTGTGTTCAGGAGTGATTCTCATTTATGAAGGAGACTCCTGCCAGGATTTACCCTC HS_haplotype2 GATTGTGTGTTCAGGAGTGATTCTCATTTATGAAGGAGACTCCTGCCAGGATTTACCCTC HS_assemblymutate GATTGTGTGTTCAGGAGTGATTCTCACTTATGAGGGAGACTGTTGCCAGGATTTACCCTC ************************** ****** ******* ***************** HS_haplotype1 TTGTTTTGTCCAGGAGTCGCCACCAAGGGAAAGGTGACAACCCCATGCCTCCAGAGAAAA HS_haplotype2 TTGTTTTGTCCAGGAGTCGCCACCAAGGGAAAGGTGACAACCCCATGCCTCCAGAGAAAA HS_assemblymutate TTGTTTTGCCCAGGAGTCGCCACCAAGGGAAAGGGGACAACCCCATGCCTCCAGAGCAAA ******** ************************* ********************* *** HS_haplotype1 TTACCATGTTAATTTTCATGCAGGATGGAAACAGCAGTGTTTGAAATTTAGTTTGGGGAA HS_haplotype2 TTACCATGTTAATTTTCATGCAGGATGGAAACAGCAGTGTTTGAAATTTAATTTGGGGAA HS_assemblymutate TTACCATGTTAATTTTCATGCAGGATGGAAAGAGCAGTGTTTGAAATTTAATTTGGGGAA ******************************* ****************** ********* HS_haplotype1 GACTAATATGCTTGAAGTAGAAGGGCAAGAACTGGAGGCGGGTTACGCCTCGGCGCCTCT HS_haplotype2 GACTAATATGCTTGAAGTAGAAGGGCAAGAAGTGGAGGCGGGTTACGCCTCGGCGCCTCT HS_assemblymutate GACTAATATGCTTGAAGTAGAAGGGCAAGAACTGGAGGCGGGTTACGCCTCGGCGCCTCT ******************************* **************************** HS_haplotype1 GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT HS_haplotype2 GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT HS_assemblymutate GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT ************************************************************ HS_haplotype1 TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA HS_haplotype2 TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA HS_assemblymutate TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA ************************************************************ HS_haplotype1 GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGACCACCACAGAGCTTTTACATG HS_haplotype2 GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGAGCACCACAGAGCTTTTACATG HS_assemblymutate GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGAGCACCACAGAGCTTTTACATG *************************************** ******************** HS_haplotype1 GAGTTAAAATAAGTTTTAGGTCAAGGACAGAGGTGTCCTCTGAACTGCCTTGATGGGCCA HS_haplotype2 GAGTTAAAATAAGTGTTTGGTCAAGGAGAGAGGTGTCTTCTGAACTGCCTTGATGGGCCA HS_assemblymutate GAGTTAAAATAAGTTTTAGGTCAAGGACAGAGGTGTCCTCTGAACTGCCTTGATGGGCCA ************** ** ********* ********* ********************** HS_haplotype1 GGACCTCAGGCATAAATATTAGCTTTGCCTTCACTGAATATTTCAAGTTCGGCTGGAAGT HS_haplotype2 GGACCTCAGGCATAAATATTAGCTTTGCCTTCCCTGAATATTTCAAGTTCGGCTGGAAGT HS_assemblymutate GGACCTCAGGCATAAATATTAGCTTTGCCTTCCCTGAATATTTCAAGTTCGGCTGGAAGT ******************************** *************************** HS_haplotype1 TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT HS_haplotype2 TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT HS_assemblymutate TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT ************************************************************ HS_haplotype1 TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTACTAGCTCACT HS_haplotype2 TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTAGTAGCTCACT HS_assemblymutate TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTAGTAGCTCACT ************************************************** ********* HS_haplotype1 CCGTGCAGTTGGAAAAAGAAGAAAAGAAAGGCGGGCGGTGCAAGGAAGGTAATGAACAGC HS_haplotype2 CCGTGCGGTTGAAAAAAGAAGAAAAGACAGGCGGGCGGTGCAAGGAAGGTAATGAACGGC HS_assemblymutate GCGTGCAGTTGGAAAAAAAAGAAAAGAAAGGCGGGCGGTGCAAGGAAGGTAATGAACAGC ***** **** ***** ********* ***************************** ** HS_haplotype1 CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATCCAGTGCTGGGCCG HS_haplotype2 CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATCCAGTGCAGGGCTG HS_assemblymutate CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATGTAGTGCAGGGATG ********************************************** ***** *** * HS_haplotype1 AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG HS_haplotype2 AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG HS_assemblymutate AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG ************************************************************ HS_haplotype1 CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACAC HS_haplotype2 CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACGC HS_assemblymutate CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACGC ********************************************************** * HS_haplotype1 ATGAATTCCTCTCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG HS_haplotype2 ATGAATTCCTCTCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG HS_assemblymutate ATGAGTTCCTCCCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG **** ****** ************************************************ HS_haplotype1 CTTTTAACAAGAGGCTGTGGTGCGAATTCAATGACTTAGCCTGCAGTCTGTCCTGTCTGA HS_haplotype2 CTTTTAACAAGAGGCTGTGGTGCTACTTCAATGACTTAGCCTGCAGTCTGTCCTGACTGA HS_assemblymutate CTTTTAACAAGAGGCTGTGGTGCTACTTCAATGACTTAGCCTGCAGTCTGTCCTGACTGA *********************** * ***************************** **** HS_haplotype1 CTGTAGGTGAATGGGGATGCTTTTTTTTTGTGATGTACTCACTGGAAAACTAGCCGAGAG HS_haplotype2 CTGTAGGTGAATGGGGATGCTTGTTTTTTATGATGTACTCACTGGAAAACTAGCCGAGAG HS_assemblymutate CTGTAGGTGAATGGGGATGCTTTTTTTTTGTGATGTACTCACTGGAAAACTAGCCGAGAG ********************** ****** ****************************** HS_haplotype1 GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC HS_haplotype2 GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC HS_assemblymutate GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC ************************************************************ HS_haplotype1 CAGTCACCACAGCCTCCTTCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC HS_haplotype2 CAGTCACCACAGCCTCCTGCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC HS_assemblymutate CAGTCACCACAGCCTCCTTCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC ****************** ***************************************** HS_haplotype1 ACATCATTCTTTTTTGAGCAGCCTCCCCTTGTTCCTGGTGTGGGTGCAAGTTCACATGGC HS_haplotype2 ACATCATTCTTTTTCGAGCAGCCTCCCCTTGTTCCTTGTGTGGGTTCAAGTTCACATGGC HS_assemblymutate ACATCATTCTTTTTCGAGCAGCCTCCCCTTGTTCCTTGTGTGGGTTCAAGTTCACATGGC ************** ********************* ******** ************** HS_haplotype1 TCATGCATTCAATACAATGGAAGCCCTATTGATATGATCCTCATGTATCTGCTTTTGATA HS_haplotype2 TCATGCATTCAAAACAGCGGAAGCCCTAGTGATATGATCCTCATGTATCTGCTTTTGATA HS_assemblymutate TCATGCATACAATACAATGGAAGCCCCATTGATATGTTCCTCGTGTATCTGCTTTTGATA ******** *** *** ******** * ******* ***** ***************** HS_haplotype1 TTTTCATTAATCCACCCGCCCAGCTGGGCTCAGTCTGAACATTGTAAAGTTCCCTGAACA HS_haplotype2 TTTTAATTAATCCACCCGCCCAGCTGGGCTCAGTCTGAAAATTGTAAAGTTCCCTGAACA HS_assemblymutate TTTTAATTAATACACCCGTCCAGCTGGGCTCAGTCTCAAAATTGTAAAGTTCCCTGAACA **** ****** ****** ***************** ** ******************** HS_haplotype1 TCCCCTCATGCTTGCAAATGAATTTTTCTAGGATTGCTCCACCCAGCCTGCGTAGTGAGG HS_haplotype2 TCCCCTCATGCTTGCAAATGAATTTTTCTAGGATTGCTCCACCCAGCCTGCGTAGTGAGG HS_assemblymutate TCCCCTCATGCATGCAAACGAATTTTTCTAGGATTGCTCCACCCAGCCTGTGTAGTGAGG *********** ****** ******************************* ********* HS_haplotype1 AAAGAAAACAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC HS_haplotype2 AAAGAAAACAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC HS_assemblymutate AAAGAAAAGAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC ******** *************************************************** HS_haplotype1 TTTGAAATGAAATATATCTGATTCTGATGATGAAGCAGGCCTCACACATGTTTACTTCAT HS_haplotype2 TTTGAAATGAAATATATCTGATTCTGATGGTGAAGCAGGCCTCACACATGTTTACTTCAA HS_assemblymutate TTTGAAATGAAATATATCTGATTCTGATGATGAAGCAGGCCTCACACATGTTTACTTCAT ***************************** ***************************** HS_haplotype1 AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATCGAGTATATTCTCTTTTCTTT HS_haplotype2 AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATTGAGTATATTCTCTTTTCTTT HS_assemblymutate AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATTGAGTATATTCTCTTTTCTTT *************************************** ******************** HS_haplotype1 ACCTACAGGCTGGGGTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAG HS_haplotype2 ACCTACAGGCGGGGTTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAA HS_assemblymutate ACCTACAGGCTGGGGTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAG ********** *** ******************************************** HS_haplotype1 CATGTCTCCTCCCTACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA HS_haplotype2 CATGTCTCCTCCCCACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA HS_assemblymutate CATGTCTCCTCCCTACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA ************* ********************************************** HS_haplotype1 AGTACCTGAATCTCTAAGCAAGTGAGTACTTTGATCTGTCTGTGCTGACTACAGTAAGTA HS_haplotype2 TGTACCTGAATCTCTAAGCAAGTGAGTGCTTTGATCTGTCTGTCCTGACTACAGTAAGTA HS_assemblymutate AGTACCTGAATCTCTAAGCAAGTGAGTACTTTGATCTGTCTGTGCTGACTACAGTAAGTA ************************** *************** **************** HS_haplotype1 CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC HS_haplotype2 CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC HS_assemblymutate CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC ************************************************************ HS_haplotype1 TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAAAAGACAGGCTAAAATACAGCTTTGGCC HS_haplotype2 TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAGAAGACAGGCTAAAATACAGCTTTGGCC HS_assemblymutate TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAAAAGACAGGCTAAAATACAGCTTAGTCC ******************************** ********************** * ** HS_haplotype1 AGCTGCACTTTGAGGGAGACCCAAACAAAGTTTTAATGTGCAGGAAGGATAACAAGTGCT HS_haplotype2 AGCTGCACTTTGAGGGAGACCCAAACAAAGTTTTAATGTGCAGGAAGGATAACAAGTGCT HS_assemblymutate AGCTGCACTTTGAGGGAGACCCAAACAAAGTTATAATGTGCAGGAAGGATAACAAGTGCT ******************************** *************************** HS_haplotype1 GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATTAG HS_haplotype2 GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATCAG HS_assemblymutate GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATTAG ********************************************************* ** HS_haplotype1 CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA HS_haplotype2 CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA HS_assemblymutate CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA ************************************************************ HS_haplotype1 CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGAGAGATTTTCATTTCTTGG HS_haplotype2 CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGGGAGATTTTCCTTTCTTGG HS_assemblymutate CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGAGAGATTTTCATTTCTTCG ***************************************** ********* ****** * HS_haplotype1 CCACCGCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC HS_haplotype2 CCACCGCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC HS_assemblymutate CCACCCCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC ***** ****************************************************** HS_haplotype1 TCTGGACGTCACTTACAGATTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG HS_haplotype2 TCTTGACGTCACTTACAGAGTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG HS_assemblymutate TCTGGACGTCACTTACAGATTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG *** *************** **************************************** HS_haplotype1 CGCCTGTTCATTATGTTGGTGCAAATACACATGCCAAGAATGGGGCCACAGTGCTCACCC HS_haplotype2 CGCCTGTTCATTAAGTTGGTGCAAATATACATGCCAAGAATGGGGCCACAGCGCTCACCC HS_assemblymutate CGCCTGTTCATTAAGTTGGTGCAAATATACATGCCAAGAATGGGCTCACAGCGCTCACCC ************* ************* **************** ***** ******** HS_haplotype1 CACAGGAGTGAGAGATGAACCACAATGAGACCATCACAATTAGGCAGAAAAGATGACTTA HS_haplotype2 CACAGGAGTGAGAGATGAACCACAAGGACACCATCACAATTAGGCAGAAAAGATGACTTA HS_assemblymutate CACAGGAGTGAGAGATGAACCACAATGAGACCATCACAATTAGGCAGAAAAGATGACTTA ************************* ** ******************************* HS_haplotype1 CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG HS_haplotype2 CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG HS_assemblymutate CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG ************************************************************ HS_haplotype1 ACACCACCATTTAAAGAACATTTTAAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG HS_haplotype2 ACACCACCATTTAAAGAACATTTTGAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG HS_assemblymutate ACACCACCATTTAAAGAACATTTTGAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG ************************ *********************************** HS_haplotype1 GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTGAAGTATACATTTTCTC HS_haplotype2 GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTTAAGTATACATTTTCTC HS_assemblymutate GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTTAAGTATACATTTTCTC ******************************************* **************** HS_haplotype1 GTTCTAGAGAGGGGAAAACCGCATGAGAGAAGGCCTGACTCTTTTAATTTTATGGCACTT HS_haplotype2 GTTCTAGAGAGGGGAAAACCGCATGAGAGAAGGCCTGACTCTTTTAATTTTATGGCACTT HS_assemblymutate GTTCTAGAGAGGGGAAAAGCTCAGGAGAGAAGGCCTGACTATTTTAATTTTATGGCACTT ****************** * ** **************** ******************* HS_haplotype1 TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCAGCTCTGG HS_haplotype2 TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCACCTCTTG HS_assemblymutate TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCACCTCTTG ***************************************************** **** * HS_haplotype1 AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT HS_haplotype2 AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT HS_assemblymutate AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT ************************************************************ HS_haplotype1 TCACTTCAGTGTCATTTATTACCATACATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT HS_haplotype2 TCACTTCAGTGTCATTTATTACCATAAATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT HS_assemblymutate TCACTTCAGTGTCATTTATTACCATAAATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT ************************** ********************************* HS_haplotype1 CACACACGGTGGGGTGTACTTTCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACAT HS_haplotype2 CACACACGGTGGGGTGTACTATCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACAT HS_assemblymutate CACACACGGTGGGGTGTACTTTCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACGT ******************** ************************************* * HS_haplotype1 TGCCACCGACTCTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC HS_haplotype2 TGCCACCGACCCTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC HS_assemblymutate TGCCACCGACCTTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC ********** ************************************************ HS_haplotype1 GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC HS_haplotype2 GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC HS_assemblymutate GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC ************************************************************ HS_haplotype1 GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC HS_haplotype2 GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC HS_assemblymutate GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC ************************************************************ HS_haplotype1 AAAATGTGGTGGAGAAATAGTCAGCATAAATTGGACAATCCTGTGCCTAGACAAAGTGCA HS_haplotype2 AAAACGTGGTGGAGAAATAGTCCGCATAAATTGGACAATCCTGTGCCTAGACAGAGTGCA HS_assemblymutate AAAATGTGGTGGAGAAATAGTTAGCATTAATTGGACAATCCTGTGCCTAGACAAAGTGCC **** **************** **** ************************* ***** HS_haplotype1 AGAGGTTTGATATTAGAAGAGCTGAATGAATATGAAAGCAGCGGCGCAGTGACTTCTTCC HS_haplotype2 AGAGGTTTGATATTAGATGAGCTGAATGAATATGAAAGCAGCGGCGCAGTGACTTCTTCC HS_assemblymutate AGAGGTTTGATATTAGATCAGCTGAATGAATATGAAAGCAGCGGCGCAGTTACATCTTCC ***************** ******************************* ** ****** HS_haplotype1 TTGAACTCTGTGGCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC HS_haplotype2 TTGCACTCTGTGGCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC HS_assemblymutate TTGAACTCTGTGTCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC *** ******** *********************************************** HS_haplotype1 AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA HS_haplotype2 AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA HS_assemblymutate AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA ************************************************************ HS_haplotype1 GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA HS_haplotype2 GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA HS_assemblymutate GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA ************************************************************ HS_haplotype1 TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT HS_haplotype2 TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT HS_assemblymutate TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT ************************************************************ HS_haplotype1 GAGATGACCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT HS_haplotype2 GAGATGTCCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT HS_assemblymutate GAGATGACCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT ****** ***************************************************** HS_haplotype1 TAATATTTGTATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG HS_haplotype2 TAATATTTGGATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG HS_assemblymutate TAATATTTGGATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG ********* ************************************************** HS_haplotype1 CCACCCAGATAAATATAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG HS_haplotype2 CCACCCAGATAAATAGAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG HS_assemblymutate CCACCCCGGTAAATATAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG ****** * ****** ******************************************** HS_haplotype1 AGATTATGGTTCTGAAAATTGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT HS_haplotype2 AGATTATGGTTCTGAAAATGGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT HS_assemblymutate AGATTATGGTTCTGAAAATGGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT ******************* **************************************** HS_haplotype1 GAGGAATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT HS_haplotype2 GAGGCATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT HS_assemblymutate GAGGAATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT **** ******************************************************* HS_haplotype1 GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGGGGGTTATACAGAGGAAG HS_haplotype2 GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGTGGGTTATACAGAGGAAG HS_assemblymutate GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGTGGGTAATACAGAGGAAG ****************************************** **** ************ HS_haplotype1 ATCCTTTTGTGAGAGCTCATCATCTTCCGAGCCTTTCTTAGAAATTGTAATCCAGGCAGG HS_haplotype2 ATCCTTTTGTGAGAGCTCATCATCTTCCGAGCCTTTCTTAGAAATTGTAATCCAGGCAGG HS_assemblymutate GTCCGTTTGTGAGAGCTCATCTTCTTCCGAGCATTTCTTAGAAATTGTAATCCAGGCAGG *** **************** ********** *************************** HS_haplotype1 ATTACTGATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCTGAGATGGA HS_haplotype2 ATTACTTATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCAGAGATGGA HS_assemblymutate ATTACTTATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCAGAGATGGA ****** ******************************************** ******** HS_haplotype1 AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCTCACATCCGCCG HS_haplotype2 AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCCCACATCCTCCG HS_assemblymutate AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCTCACATCCGCCG ************************************************ ******* *** HS_haplotype1 CCAGGAAAGCATCTCCTTGCTCTACCCTTGTTCCGAGACTGACCCCGTCGCCTCTTCTTG HS_haplotype2 CCAGGAAAGCATGTCCTTGCTCTACCCTTGTTCCGAGACTGACCCCGTCGCCTCTTCTTG HS_assemblymutate CCAGGAAAGCATCTCCTTGCTCTACCCTTGTTCCGACACTGACCCCCTCGCCTCTTCTTG ************ *********************** ********* ************* HS_haplotype1 CAGGAAAAGTCCTGTACCCAATTTAGATCGCAGTGGCAGGATGTTATCTCTAGGAACGTA HS_haplotype2 AAGGAAAAGTCCTGTACCCAATTTCGATCGCAGTGGCTGGATGTAATCTCTAGGAACGTA HS_assemblymutate CAGGAAAAGTCCTGTACCCAATTTAGATCGCAGTGGCAGGATGTTATCTCTAGGAACGTA *********************** ************ ****** *************** HS_haplotype1 GGAAGAAAGGAATTCCCGCAGGGGAGGTAATTATTACTAAGGAATTGCAGCGACCCACGA HS_haplotype2 GGGAGAAAGGAATTCCCGCAGGGGAGGTAATTATTACTAAGGAATTGCAGCGACCCACGA HS_assemblymutate GGGAGAAGGGAATCCCCGCAGGGGAGGTAATTATTACTAACGAATTGCAGCGAACCACGA ** **** ***** ************************** ************ ****** HS_haplotype1 TTCCACTCTTTCTATTGTATGTCTGAATCGATCTTCTGCAACCCAGCCACCTCACCCAAC HS_haplotype2 TTCCACTCTTTCTATTGTATGTCTGAATCGATCTTCTGCAACCCAGCCACCTCACCCAAC HS_assemblymutate TTCCACTCTTTCTATTGTATGTCTGAATCGGTCTTCTGCAACCCAGCCACCTCACCCAAC ****************************** ***************************** HS_haplotype1 CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATACTCAGGAA HS_haplotype2 CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATTCTCAGGAA HS_assemblymutate CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATTCTCAGGAA *************************************************** ******** HS_haplotype1 TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA HS_haplotype2 TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA HS_assemblymutate TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA ************************************************************ HS_haplotype1 ATTAGTCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC HS_haplotype2 ATTAGGCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC HS_assemblymutate ATTAGGCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC ***** ****************************************************** HS_haplotype1 CAAGATAATAAAAATAAAGCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT HS_haplotype2 CAAGATAATAAAAATAAATCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT HS_assemblymutate CAAGATAATAAAAATAAAGCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT ****************** ***************************************** HS_haplotype1 TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGAAA HS_haplotype2 TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGACA HS_assemblymutate TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGACA ********************************************************** * HS_haplotype1 CTGCCACCGGAGTGCTGCAACTAAGGCCCAGCTAATTACTCGGGGTCCCAGCTGAATGAG HS_haplotype2 CTGCCACCGGAGTGCTGAAACTACGGCCCAGCTAATTACTCGGGGACCCAGCTGAATGAG HS_assemblymutate CTGCCACCGGAGTGCTGCAACTAAGGCCCAGCTAATTACTCGGGGTCCCAGCTGAATGAC ***************** ***** ********************* ************* HS_haplotype1 GCCCCCAACGTAGCCAGGCGTGATCCTAGTTTCCAGCCTCTGAGCTGAGGCTGCAGAGCT HS_haplotype2 GCCCCCAACGTAGCCAGGCGTGATCCTAGTTTCCAGCGTCTGAGCTGAGGCTGCAGAGCT HS_assemblymutate GCCCCTAACGTAGCCAGGCGTGATCCTAGTTTCCAGCGTCTGAGCTGAGGCTGCAGAGCT ***** ******************************* ********************** HS_haplotype1 GAGTTGAATGGCTTCATTAAATGACGGAAGTGAGAGGAGCATGTCCGGACCTCACACTCA HS_haplotype2 GAGTTGAATGGCTTCATTAAATGACTGAAGTGAGAGGAGCATGTCCGGACCTCACACTCA HS_assemblymutate GAGTTGAATGGCTTCATTAAGTTACGGAAGTGAGAGGAGCATGTCCGGACCTCACACTCT ******************** * ** ********************************* HS_haplotype1 AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCTAAATGATAACATGGGGGGGCCACT HS_haplotype2 AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCGAAATGATAAGATGGGGGGGCCACT HS_assemblymutate AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCGAAATGATAAGATGGGGGGGCCACT *********************************** ********* ************** HS_haplotype1 GCAGCAGTAATGTAGCATCTCAGAAGGGATTTCTTTTCATCCAAAATAATATGACACCAT HS_haplotype2 GCAGCAGTAATGTACCATCGCAGAAGGGATTTCTTTTCATCCAATATAATATGACACCAT HS_assemblymutate GCAGCAGTAATGTAGCATCTCAGAAGGGATTTCTTTTCATCCAAAAGAATATGAAACCAT ************** **** ************************ * ******* ***** HS_haplotype1 GAGTCAGTGGGATCCAAAGGGCCACGAGGCAGGGTGTCCCAACCACCACTGAATCAATTC HS_haplotype2 GAGTCAGTGGGATCCAAAGGGCCATGAGGCAGTGTGTCCCAACCACCACTGAATCAATTC HS_assemblymutate GAGTCAGTGGGATCCAAAGGGCCATGAGGCGGTGTGTCCCAACCACCACTGAATCAATTC ************************ ***** * *************************** HS_haplotype1 AGCGAGTTCTTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCTTTT HS_haplotype2 AGCGAGTTCCTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCGTTT HS_assemblymutate AGCGAGTTCTTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCTTTT ********* ********************************************** *** HS_haplotype1 TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGGACACCCAGGGTTC HS_haplotype2 TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGCACACCCAGGGTTC HS_assemblymutate TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGCACACCCAGGGTTC ********************************************** ************* HS_haplotype1 CTGAGTGAATCGGGCCGCAGGGGGGAGTGGAGGCTGACCTCATCACATGAGGGGACCATG HS_haplotype2 CTGAGTGAATCGGGCCGCAGGGGGGAGTGCAGGCTGACCTCATCACATGAGGGGACCTTG HS_assemblymutate CTGAGTGAATCGGGCCGCAGGGGGGAGTGGAGGCTGACCTCATCACATGAGGGGACCGTG ***************************** *************************** ** HS_haplotype1 AGATATAATCTTAATGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCC HS_haplotype2 AGATATAATCTTAATGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCA HS_assemblymutate AGATATAAGCTTAACGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCA ******** ***** ******************************************** HS_haplotype1 AATCCTACTTTCACCTCCCCTAGGCAAAGATAGGAATGTGTGAGCAGTGGCTCACGCCAA HS_haplotype2 AATCCTACTTTCTCCTCCCCTAGGCAAAGATAGGTATGTGTGAGCAGTGGCTCACGCCAA HS_assemblymutate AATCCTACTTTCTCCTCCCCTAGGCAAAGATAGGTATGTGTGAGCAGTGGCTCACGCCAA ************ ********************* ************************* HS_haplotype1 CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT HS_haplotype2 CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT HS_assemblymutate CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT ************************************************************ HS_haplotype1 CTGAGAAAGATGGTTAAAAAGAAATCACCCCTGTTCCTGGGGGCCAGACTTCAGGGTTCA HS_haplotype2 CTGAGAAAGATGGTTAAAAAGAAATCAGCCCTGTTCCTGGGGGCCAGACTTCATGGTTCA HS_assemblymutate CTGAGAAAGATGGTTAAAAAGAAATCACCCCTGTTCCTGGGGGCCAGACTTCAGGGTTCA *************************** ************************* ****** HS_haplotype1 ATCCCATGCAAGACGGGCGTAGTATATGAGTAAAACAGAATTTACAGTTGGCTCAAGATC HS_haplotype2 ATCCCATGCAAGACGGGCGTAGAATATGAGTAAAACATAATTTACAGGTGGCTCAAGTTC HS_assemblymutate ATCCCATGCAAGACGGGCGTAGAATATGAGTAAAACATAATTTACAGGTGGCTCAAGTTC ********************** ************** ********* ********* ** HS_haplotype1 CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC HS_haplotype2 CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC HS_assemblymutate CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC ************************************************************ HS_haplotype1 TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC HS_haplotype2 TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC HS_assemblymutate TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC ************************************************************ HS_haplotype1 AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT HS_haplotype2 AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT HS_assemblymutate AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT ************************************************************ HS_haplotype1 CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTGAATTTTTGTTTATAGA HS_haplotype2 CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTTAATTTTTGTTTATAGA HS_assemblymutate CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTTAATTTTTGTTTATAGA ******************************************* **************** HS_haplotype1 TTCTCTACTGTGTCTCTCCCTAAGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG HS_haplotype2 TTCTCTACTGTGTCTCTCCCAAAGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG HS_assemblymutate TTCTCTACTGTGTCTCTCCCTATGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG ******************** * ************************************* HS_haplotype1 TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG HS_haplotype2 TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG HS_assemblymutate TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG ************************************************************ HS_haplotype1 TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG HS_haplotype2 TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG HS_assemblymutate TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG ************************************************************ HS_haplotype1 GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCATTGTTTAAAGTGTTGCCAGGTGGGGA HS_haplotype2 GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCACTGTTTGAAGTGTAGCCAGGTGGGGA HS_assemblymutate GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCACTGTTTGACGTGCAGCCAGGTGGGGA ********************************** ***** * *** ************ HS_haplotype1 GGTAAAAAGAAAGATCACTGTAGCGCGGTAGTGATTCTAAAACAGTAGGAGAAAGCTGAG HS_haplotype2 GGTAAAAAGAAAGATCGCTGTAGCGCGGTAGTTATTCTAAAACAGTAGGAGAAAGCTGAG HS_assemblymutate CGTAAAAAGAAAGATCACTGTAGCGCGGTAGTGATTCTAAAACAGTAGGAGAAAGCTGAG *************** *************** *************************** HS_haplotype1 ACAAAATACAGTGATCAAGAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT HS_haplotype2 ACAAAATACAGTGATCAACAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT HS_assemblymutate ACAAAATACAGTGATCAACAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT ****************** ***************************************** HS_haplotype1 AATCCTGTTGATGGCTGTAGTCCAGACTCCACATAGATGAAGGAAGAAGAGACCTGCCTT HS_haplotype2 AATCCTGTTGATGGCTGTAGTCCAGACTCCACATAGATGAAGGAAGAAGAGACCTGCCTT HS_assemblymutate AATCCTGTTGATGGCTGTAGTCCAGACTCCGCATAGATGAATGAAGAAGAGACCTGCCTT ****************************** ********** ****************** HS_haplotype1 TTGTAGCCGGGCTGCATTATCTTCATTTACATCTATGGGAACAGATAGACCTTCGAGAGC HS_haplotype2 TTGTAGCCGGGCTGCATTATCTTCATTTACATCTATGGGAAAAGAGAGACCTTCGAGAGC HS_assemblymutate TTGTAGGCGGGCTGCATTATCTTCATTTACATCTGTGGGAATAGAGAGACCTTCGAGAGC ****** *************************** ****** *** ************** HS_haplotype1 CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCTCTGAATTTTTCACCTAAAGCGGCC HS_haplotype2 CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCCCTGAATTTTTCACCAAAAGCGGCC HS_assemblymutate CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCTCTGAATTTTTCACCTAAAGCGGCC *********************************** ************** ********* HS_haplotype1 GCTGCCCAGGCGTTGCTGTGGACCCAGTTAAGACCATCTGTGCGCAGACTGAGTAAATAA HS_haplotype2 GCTGCCCAGGCGTTGCTGTGGGCCCAGTTAAGACCATCTGTGCGCAGACTTAGTAAATAA HS_assemblymutate GCTGCCCAGGCGTTGCTGTGGGCCCAGTTAAGACCATCTGTGCGCAGACTTGATAAATAA ********************* **************************** ******* HS_haplotype1 AGGGCTGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTCAT HS_haplotype2 AGGGCTGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTGAT HS_assemblymutate AGGGCCGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTCAT ***** *************************************************** ** HS_haplotype1 TACCAGACGCCTGTAAAGAGTGAGAGATGAGAAGGTAAGCTAATCTGAACAAAAATTAAG HS_haplotype2 TACCAGACGCTTGTAAAGAGTGTGAGATGAGAAGGTAAGCTACTCTGAACAAAAATTAAG HS_assemblymutate TACCAGACGCCTGTAAAGAGTGAGAGATGAGAAGGTAAGCTAATCTGAACAAAAATTAAG ********** *********** ******************* ***************** HS_haplotype1 GCACCAAGTCTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTC HS_haplotype2 GCACCAAGTTTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTT HS_assemblymutate GCACCAAGTCTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTC ********* ************************************************* HS_haplotype1 AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT HS_haplotype2 AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT HS_assemblymutate AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT ************************************************************ HS_haplotype1 CCTGATTACAGACTTCAAAAATCCTAAAATGCCCATCAAAGATGATTGCTTCCCATTCTG HS_haplotype2 CCTGATTACAGACTTCAAAAATCCTAAAATGCCCATCAAAGATGATTGCTTCCCTTTCTG HS_assemblymutate CCTCATTACAGTCTTCAAAAATCCTAAAATGCGCTTCAAAGAAGATTGCTTCCCATTCTG *** ******* ******************** * ******* *********** ***** HS_haplotype1 TCCTAGGACTCAAAGGATGGGAGGCAGGGAAAAGAATGCCTGAGACTCAGTACATTAGTA HS_haplotype2 TCCTAGGACTCAAAGGATGGGAGGCAGGGAAAAGAATGCCTGAGACTCAGTACATTAGTA HS_assemblymutate TCCTAGGACTCAAAGTATGGGAGGCAGGGATAAGAATGCCTGAGACTCAGTACATTAGTA *************** ************** ***************************** HS_haplotype1 CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC HS_haplotype2 CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC HS_assemblymutate CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC ************************************************************ HS_haplotype1 TAATATGCCGCTCCCAGGCCGTCGGAAAGACTATAGGTGTTATCCCTGTATGGGAGAGTT HS_haplotype2 TAATATGCTGCTCCCAGGCCGTCGGAAAGACTATAGGTGTTATCTCTGTATGGTAGAGTT HS_assemblymutate TAATATGCTGCTCCCAGGCCGTCGGAAAGACTATAGGGGTTATCTCCGTATGGTAGAGTT ******** **************************** ****** * ****** ****** HS_haplotype1 CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGTAACTTAGCAGTAGCCAGGA HS_haplotype2 CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGGAACTTAGCAGTAGCCAGGA HS_assemblymutate CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGTAACTTAGCAGTAGCCAGGA **************************************** ******************* HS_haplotype1 TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTGTTCTGTTAGTATAATGG HS_haplotype2 TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTGTTCTGTTAGTATAATGG HS_assemblymutate TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTATTCTATTAGTATAATGG ****************************************** **** ************ HS_haplotype1 TGAAATGTGAGGCAGGGCTAGGTCTGCGATTATGTGCGCAGCCAATTTTGTATAAATGCA HS_haplotype2 TGAAATGTGAGGCAGGGCTAGGTCTGTGATTATGTGCGCAGCCAATTTTGTATAAATGCA HS_assemblymutate TGAAATGTGAGGCAGGGCTAGGTCTGCGATTATGTGCGCAGCCAATTTTGTATAAATGCA ************************** ********************************* HS_haplotype1 AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA HS_haplotype2 AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA HS_assemblymutate AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA ************************************************************ HS_haplotype1 TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATATCAACGTAACCCTCCATCAGAGAGAA HS_haplotype2 TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATCTCAACGTAACCCTCCTTCAGAGAGAA HS_assemblymutate TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATATCAACGTAACCCTCCATCAGAGAGAA ********************************* *************** ********** HS_haplotype1 TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTGCCACTGCA HS_haplotype2 TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTCCCACTGCA HS_assemblymutate TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTCCCACTGCA *************************************************** ******** HS_haplotype1 GTCCCATCTAGGGTTCATCACCGGGCCTGGCAGCCCAGCTACTTAATACCTTAGGATGGT HS_haplotype2 GTCCCATCTAGGGTTCATCACAGGGCCTGGCAGCCCAGCTACTTAATACCTCAGGATGGT HS_assemblymutate GTCCCATCTAGGGTTCATCACAGGGCCTGGCAGCCCAGCTACTTAATACCTTAGGATGGT ********************* ***************************** ******** HS_haplotype1 AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCAGGCTGGGCACCGGTTATT HS_haplotype2 AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCTGGCTGGGCACCGGTTATT HS_assemblymutate AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCTGGCTGGGCTCCGGTTATT ***************************************** ******** ********* HS_haplotype1 TGTATTTAGAGATATTACACTAGCATACACAATAAATGTGTGTAACCTCTGCCGAGTCGC HS_haplotype2 TGTATTTAGAGATATTACACTAGCATCCACAATAAATGTGTGTAACCTCTGCCGAGTCGC HS_assemblymutate TGGATTTAGAGATATTACACTAGCATACACAATAAAGGTGTGTAACCTCTGCCGAGTCGC ** *********************** ********* *********************** HS_haplotype1 CCGCCTGGGGCCTAAAGAAACTAGCTGTCCTTCGCTCGCGCGTTTCCAGATGGTGAGGAG HS_haplotype2 CCGCCTGGGGCCCAAAGAAACTAGCTTTCCTTCGCTCGCGCGTTCCCAGATGGTGAGGAG HS_assemblymutate CCGCCTGGGGCCCAAAGAAACTAGCTTTCCTTCGCTCGCGCGTTCCCAGATGGTGAGGAG ************ ************* ***************** *************** HS_haplotype1 CTGTTCCTCTTCCATTTTTGTAGCCATACATAGAATTTAGATGCTGAGGAGGGACGCCCC HS_haplotype2 CTGTGCCTCTTCCATTTTTGTAGCCATACATAGAATTTGGATGCTGAGGAGGGACGCCTC HS_assemblymutate CTGTTCCTCTACCATTTTTGTAGCCATACATAGAATTTAGATGCTCAGGAGGGACGCCCC **** ***** *************************** ****** ************ * HS_haplotype1 ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA HS_haplotype2 ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA HS_assemblymutate ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA ************************************************************ HS_haplotype1 ATTGCTTGTGTAAACGACTGTTGCAGGAACACCAAGTATTTTCGTTAAGGAACCCCAACC HS_haplotype2 ATTGCTTGTGTAAACGACTGTTGCTGGAACACCAAGTATTTTCGTTAAGGAACCCCAGCC HS_assemblymutate ATTGCTTGTGTAAACGACTGTTGCAGGAACACCAAGTATTTTCGTTAAGGAACCCCAACC ************************ ******************************** ** HS_haplotype1 TGGGTGACACAAGATTCTCGCTTGTATTTTTAAAAAACAAAAAAATTTTGAGTATATATC HS_haplotype2 TGGGTGACACTAGATTCTCGCTTGTGTTTTTAAAAAACAAAAAAATTTTGAGTATATATC HS_assemblymutate TGGGTGACACTAGATACTCGCTTGTGTTTTTAACAAACAAAAAAATTTTGAGTATATATC ********** **** ********* ******* ************************** HS_haplotype1 CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACATCTACAGCAGGGGCTTATATCTTTTC HS_haplotype2 CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACAGCTACAGCAGGGGCTTATATCTTTTC HS_assemblymutate CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACATCTACAGCAGGGGCTTATATCTTTTC ********************************** ************************* HS_haplotype1 ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT HS_haplotype2 ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT HS_assemblymutate ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT ************************************************************ HS_haplotype1 AATTGGGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC HS_haplotype2 TATTGTGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC HS_assemblymutate AATTGGGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC **** ****************************************************** HS_haplotype1 CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG HS_haplotype2 CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG HS_assemblymutate CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG ************************************************************ HS_haplotype1 GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCATCCACTGCAGTGGTA HS_haplotype2 GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCAACCACTGCAGTGGTA HS_assemblymutate GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCATCCACTGCAGTGGTA ********************************************* ************** HS_haplotype1 AATTCTCAAGCGATTCTTCTGAATTTGCAGTGTATGAACAGATGTAATCCCCCGTCCAGT HS_haplotype2 AATTCTCAAGCGATTCTTCTGAATTTGCAGTGTATGAACAGATGTAATCCCCCGTACAGT HS_assemblymutate AATTCTCAAGCGATTCTTCTGAATTCGCATTGTATGAACAGATGTAATCCCCCGTACAGT ************************* *** ************************* **** HS_haplotype1 GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT HS_haplotype2 GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT HS_assemblymutate GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT ************************************************************ HS_haplotype1 TTACTCTGGCTTTTGTATTTTAAGGGTTTACTGCTTTACATTCTGCCTCCGTCTTAACTA HS_haplotype2 TTACTCTGGCTTTTGTATTTAACGGGTTTACTGCTTTAAATTCTGCCTCCGTCTTAACTA HS_assemblymutate TTACTCTGGCTTTTGTATTTAACGGGTTTACTGCTTTAAATTCTGCCTCCGTCTTAACTA ******************** * *************** ********************* HS_haplotype1 GTAAATATGAAAATGGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC HS_haplotype2 GTAAATATGACAATAGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC HS_assemblymutate GTAAATATGAAAATGGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC ********** *** ********************************************* HS_haplotype1 ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATTAAGAATGT HS_haplotype2 ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATCAAGAATGT HS_assemblymutate ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATCAAGAATGT *************************************************** ******** HS_haplotype1 AAGTGACCAAAAGACCCTCTTCAGTAGCGATCTAACTTTTAGAAGCACTCTCATCTGGAC HS_haplotype2 AAGTGACCAAAAGACCCTCTTCTGTAGCGAACTAACTTTTAGAAGCACTCTCATCTGGAC HS_assemblymutate AAGTGACCAAAAGACCCTCTTCAGTAGCGATCTAACTTTTAGAAGCACTCTCATCTGGAC ********************** ******* ***************************** HS_haplotype1 AGTGAAGGCTGGTTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT HS_haplotype2 AGTGAAGGCTGGCTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT HS_assemblymutate AGTGAAGGCTGGCTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT ************ *********************************************** HS_haplotype1 AGGTGAAAATATGTGTGATACAACAGATGAAATAGGGTAGCTACTCTTCTACATTTGCAA HS_haplotype2 AGGTGAAAATATGTGTGATACAACAGATGAAATAGGGTAGCTACTCTTCTACATTTGCAA HS_assemblymutate AGGTGAAAATATGTGTGATACAACAGATGATATAGGGTAGATACTCTTCTACATTTGCAA ****************************** ********* ******************* HS_haplotype1 TTGAGAAGACTCTTTCCTTAGGTATCATTGGTCCCCAGCCTGTTGGTACTGATGGACCGG HS_haplotype2 TTGAGAAGACTCCTTCCTTAGGTATCATTGGTCCCCAACCTGTTGGGACTGATGGACCGG HS_assemblymutate TTGAGAAGACTCCTTCCTTAGGTATCATTGGTCCCCAACCTGTTGGGACTGATGGACCGG ************ ************************ ******** ************* HS_haplotype1 GGTGTGTGTATTTTAACTCCTGTAAACAACCATAATATTCAGCTCTAGGAATTCATGTTG HS_haplotype2 GGTGTGTGTATTTTAACTCCTGTATACAACCATAATATTCAGCTCTAGAAATTCAGGTTG HS_assemblymutate GATGTCTGTATTTTAACTCCTGTAAACAACCATAATATGCAGCTCTTGGAATTCATGTTG * *** ****************** ************* ******* * ****** **** HS_haplotype1 CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGTCTGGGTGACA HS_haplotype2 CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGGTTGGGTGACA HS_assemblymutate CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGGTTGGGTAAAA ************************************************* ***** * * HS_haplotype1 TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC HS_haplotype2 TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC HS_assemblymutate TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC ************************************************************ HS_haplotype1 GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATTCCAGGAGTTCAG HS_haplotype2 GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATCCCAGGAGTTCAG HS_assemblymutate GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATCCCAGGAGTTCAG *********************************************** ************ HS_haplotype1 AAAGTCCAACGACTGTCCCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT HS_haplotype2 AAAGTCCAAAGACTGTCTCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT HS_assemblymutate AAAGTCCAACGACTGTCCCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT ********* ******* ****************************************** HS_haplotype1 GATAATCACAGGACAACTAACCAGATGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT HS_haplotype2 GATAATCACAGGACAACTAACCAGTTGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT HS_assemblymutate GATAATCACAGGACAACTAACCAGTTGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT ************************ *********************************** HS_haplotype1 AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAATTA HS_haplotype2 AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAATTA HS_assemblymutate AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAACTA ********************************************************* ** HS_haplotype1 AGGTCAGGACACGCTGCAGCTCTCCAAATGACTATAGCCTTTTCCTTCAGAAGGCAATCC HS_haplotype2 AGGTCAGGACACTCTGCAGCTCTCCAAATGACTATAGCCTTTTCCTTCAGAAGGCAATCC HS_assemblymutate AGGACAGGACACTCTGCTGCTCTCCAAATTACTATAGCCTTTTCCTTCAGAAGGCAATCC *** ******** **** *********** ****************************** HS_haplotype1 AGTCATCCGCGCCGGGCCCTGAGTGGTGAGGTGATACTGCATGAAGACAGGCCTCCAAGG HS_haplotype2 AGTCATCCGCGCCGGGCCCTGGGTGGTGAGGTGATACTGCATGAAGACTGGCCTCCAAGG HS_assemblymutate AGTCCTCCGCGCCGGGCCCTGAGTGGTGAGGTGATACTGCATGAAGACAGGCCTCCAAGG **** **************** ************************** *********** HS_haplotype1 CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA HS_haplotype2 CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA HS_assemblymutate CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA ************************************************************ HS_haplotype1 GCGAGGGAACCTGCCTCACCTCTGTTCAACGCTATGGCTGCCTGGCAAGCTTGCAGGGCA HS_haplotype2 GCGAGGCAACCTGCCTCACCTCTGTTCAATGCTATGGCTGCCTGGCAAGCTTGCAGGGCA HS_assemblymutate GCGAGGGAACCTGCCTCACCTCTGTTCAACGCTATGGCTGCCTGGCAAGCTTGCAGGGCA ****** ********************** ****************************** HS_haplotype1 GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGGGAACAGAAGAAAT HS_haplotype2 GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGGGAACAGAAGAAAT HS_assemblymutate GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGAGAACAGCAGAAAT ********************************************** ****** ****** HS_haplotype1 ATCAATTACGTTCATCAAGGGTACTATGTTAAAGGAAATGTGTTTTAGGAGGACCCGGAC HS_haplotype2 ATTAATTACGTTCATCAAGGGTACTATGTTAAAGGAAATGTGTTTTAGGAGGACCCGGAC HS_assemblymutate ATCAATTACGTTCATCAAGGGTACGATGTTAAAGGAAATGTGTTTTAGGCGGACCCGGAC ** ********************* ************************ ********** HS_haplotype1 AAACATGTTGTGTCTCGCTTTTTTCATACAAATGAGATCTAGAGTACTTGGCTCCACACC HS_haplotype2 AAACATGTTGTTTCTCGCTTTTTTCATACAAATGAGATCTAGACTACTTGGCTCCACACC HS_assemblymutate AAAAATGTTGTTTCTCGCTTTTTTCATACAAATGAGATCTAGACTACTTGGCTCCACACC *** ******* ******************************* **************** HS_haplotype1 AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC HS_haplotype2 AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC HS_assemblymutate AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC ************************************************************ HS_haplotype1 CCCAGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA HS_haplotype2 CCCGGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA HS_assemblymutate CCCGGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA *** ******************************************************** HS_haplotype1 TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGGTGAATGACAGCC HS_haplotype2 TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGGTGAATGACTGCC HS_assemblymutate TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGACGAATGACAGCC *********************************************** ******* *** HS_haplotype1 TCCCTGGATTACAACGTGGGTCAATGAAAATTATTTGGTCTTCATACCTCATCTGTGTAA HS_haplotype2 TCCCTGGATTACAACGTGGGTCAATGAAAATTTTTTGGTCTTCATACCTCATCTGTGTAA HS_assemblymutate TCCCTGGATTACAACGTGGGTCAATGAAAATTTTTTGGTCTTCATACCTCATCTGTGTGA ******************************** ************************* * HS_haplotype1 GCTTCAAACCACTGCTTGTATAGGAGTTCACTTAGCGGGCGGAATCCCTCCCTGTCCCTT HS_haplotype2 GCTTCAAACCTCTGCTTGTATAGGAGTTCACTTAGCGGCCGGAATCCCTCCCTGTCCCTT HS_assemblymutate ACTTCAAACCACTGCTTGTATACGAGTTCACATAGCGGGCGGAATCCCTCCCTGTCCCTT ********* *********** ******** ****** ********************* HS_haplotype1 AAGGGAGAATTGAAGGCCCTCAGGTACTGGGTCTCATCGTGCAGTAGCTGAGGGGCCAGA HS_haplotype2 CAGGGAGAATTGCAGGCCCTCAGGTACTGGGTCTCATCATGCAGTAGCTGAGGGGCCAGA HS_assemblymutate CAGGGAGAATTGCAGGCCCTCAGGTACTGGGTCTCATCATGCAGTAGCTGAGGGGCCAGA *********** ************************* ********************* HS_haplotype1 TCCAACGTCCGTCCCCTCAGGTTTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC HS_haplotype2 TCCAACGTCCGTCCCCTCAGGTGTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC HS_assemblymutate TCCAACGTCCGTCCCCTCAGGTTTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC ********************** ************************************* HS_haplotype1 TTTCCGCTGAGCCATCTCAAATTCGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA HS_haplotype2 TTTCCGCTGAGCCATCTCAAATACGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA HS_assemblymutate TTTCCGCTGAGCCATCTCAAATACGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA ********************** ************************************* HS_haplotype1 GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTGCTGGG HS_haplotype2 GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTCCTGGG HS_assemblymutate GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTGCTGGG ****************************************************** ***** HS_haplotype1 CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGCTCCAA HS_haplotype2 CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGCTCCAA HS_assemblymutate CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGGTCCAA ****************************************************** ***** HS_haplotype1 TTCAAGAAGACCCAGGCAGTGAGCCCAGCCCCCCAGCTCCGTCGTGGAGAAGGATGATTA HS_haplotype2 TTCAAGAAGGCCCAGGCAGTGAGCCCAGCCCCCCAGCTCCCTCGTGGAGAAGGATGCTTA HS_assemblymutate TTCATGAAGACCCAGGCAGTGAGCCCAGCCCCCCAGCTCCGTCATGGAGAAGGATGATTA **** **** ****************************** ** ************ *** HS_haplotype1 TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTGTTATACTTTGGCTTAAACCCG HS_haplotype2 TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTTTTATACTTTGGCTTAAACCCG HS_assemblymutate TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTTTTATACTTTGGCTTAAACCCG ************************************** ********************* HS_haplotype1 GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGATCTCTGTAG HS_haplotype2 GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGATCTCTGTAG HS_assemblymutate GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGCTCTCTGTAG ************************************************** ********* HS_haplotype1 AGGCAGCCACCCGATTACAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACAATAGG HS_haplotype2 AGGCAGCCACCCGATTGCAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACTATAGG HS_assemblymutate AGGGAGCCACCCGATTGCAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACTATAGG *** ************ ************************************* ***** HS_haplotype1 GTTCAGACACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCC HS_haplotype2 GTTCAGAAACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCC HS_assemblymutate GTTCAGAAACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCT ******* *************************************************** HS_haplotype1 AGTCAATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG HS_haplotype2 AGTCAATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG HS_assemblymutate AAGCGATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG * * ******************************************************* HS_haplotype1 TTTGAGATTTTAAACAATTTACATGCTCCTGGAAAATTTTTTCTGACAGAGAGATCAGCT HS_haplotype2 TTTGAGATTTTAAACAATTTACATGCTCCTGGAAAATTTTTTCTGACAGAGAGATCAGCT HS_assemblymutate TTTGAGATTTTAAACAATTTACATGCTCCTGGGAAATTTTTTCTGTCAGAGAGATCAGCT ******************************** ************ ************** HS_haplotype1 AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTCACCTCA HS_haplotype2 AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTAACCTCA HS_assemblymutate AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTAACCTGA ***************************************************** **** * HS_haplotype1 CAACAGGCTGCTCGTCGAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG HS_haplotype2 CAACAGGCTGCTCGTCCAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG HS_assemblymutate CAACAGGCTGCGCGTCGAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG *********** **** ******************************************* HS_haplotype1 GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATTATTTGTGATGGCTTGGTG HS_haplotype2 GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATGATTTGTGATGGCTTGGTG HS_assemblymutate GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATGATTTGTGATGGCTTGGTG ***************************************** ****************** HS_haplotype1 CACATTTATGTAATTGCTGTAATACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC HS_haplotype2 CACATATATGTAATTGCTGTACTACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC HS_assemblymutate CACATATATGTAATTGCTGTACTACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC ***** *************** ************************************** HS_haplotype1 CTGAGCGCGAGGTAATTCGCTAGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT HS_haplotype2 CTGAGCGCGAGGTAATTCGCTCGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT HS_assemblymutate CTGAGCGCGAGGTAATTCGCTCGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT ********************* ************************************** HS_haplotype1 CACCCGCTGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG HS_haplotype2 CACCCGCGGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG HS_assemblymutate CACCCGCTGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG ******* **************************************************** HS_haplotype1 GTTCTTCAGAGTTTACCAGCCCAGCTGTTTTAACTCTGCCATAACACTTCAAAAGCACGT HS_haplotype2 GTTCTTCAGAGTTTACCAGCCGAGCTGTTTTAACTCTGCAATAACACTTCAAAAGCACGT HS_assemblymutate GTTCTTCAGAGTTTACCAGCCGAGCTGTTTTAACTCTGCAATAACACTTCAAAAGCACGT ********************* ***************** ******************** HS_haplotype1 TATGTAATATATACACTTCATCACCTGGCTTGAATATTGAGGAGTTGGGGTGTCCGCCAA HS_haplotype2 TATGTAATATATACACTTCCCCACCTCGCTTGAATATTGAGGAGTTGGGGTGTCCGCCAA HS_assemblymutate TATGTAATATATACACTTCATCACCTGGCTTGAATAGTGAGGAGGTGGGGTGTCCGCCAA ******************* ***** ********* ******* *************** HS_haplotype1 CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC HS_haplotype2 CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC HS_assemblymutate CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC ************************************************************ HS_haplotype1 ATAAAATACTCTATGTCTGGTAACCTCTGAAATTGCTTTGGGGGATTATGAAGAAACTGA HS_haplotype2 ATAAAAAACTCTATGTCTGGTAACCTCTGAAATTGCTTTGGGGGATTATGAAGAAACTGA HS_assemblymutate ATAAAATACTCTATGTCTGGTAACCTCTGAAATTCCTTTGGGGAATTATGAAGAAACTGA ****** *************************** ******** **************** HS_haplotype1 ACAACATTTTTGTTCAAACATATGTTTGAACACCTATGCCCCTAGATCAAGTAGCTTTCC HS_haplotype2 ACAACATTTTTGTTCAAACATATGTTTGAACACCTATGCCCCTAGATCTAGTAGCTTTCC HS_assemblymutate ACAACATTTTTGTTCAAACATAGGTTTGAACACCTATGCCCCTAGATCTAGTGGCTTTCC ********************** ************************* *** ******* HS_haplotype1 TTATTTATATCTGGGTTTTGATCTCTATTCAAGGACTGGGCTTACTAGATAACCTGGAGT HS_haplotype2 TTATTTATATCTGGGTTCTGATCTCTATTCAATGACTGGGCTTACTGGATAACCTGGAGT HS_assemblymutate TTATTTATATCTGGGTTTTGATCTTTATTCAAGGACTGGGCTTACTAGATAACCTGGAGT ***************** ****** ******* ************* ************* HS_haplotype1 TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTAGTGGTTTTTCCGCCATG HS_haplotype2 TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTACTGGTTTTTCCACCATG HS_assemblymutate TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTACTGGTTTTTCCACCATG ******************************************* ********** ***** HS_haplotype1 GCAACCCCAATTTCTACTTGGCTCATCCTCCCGCCGCGTGGCCCCTCCACTGCAACTACA HS_haplotype2 GCAACCCCAATTTCTACTTGGCTCATCCTCCCGCCGCGTGGCCCCTCCACTGCAACTACA HS_assemblymutate GCAACCCCAATTTCTACTTACCTCATCCTCCCGCCGCGTGGTCCCTCCACTGCAACTACA ******************* ******************** ****************** HS_haplotype1 TCCCCGACCAGATCGATTGTGCTACTAATTCTCTATCCGATGTATTACATTGTGGAGAGA HS_haplotype2 TCCCCGACCAGATCGATAGTGCTACTAATTCTCTATCCAATGTAATACATTGTGGAGAGA HS_assemblymutate TCCCCGACCAGATCGATAGTGCTACTAATTCTCTATCCAATGTAATACATTGTGGAGAGA ***************** ******************** ***** *************** HS_haplotype1 GTATGTACATACCTAAGAGTGGTTCTCCACCGTGTTGTTTGTGACAATCGTAAAATTGCA HS_haplotype2 GTATGTACATACCTAAGAGTGGTTCTCCACCGTGTTGTTTGTGACAATCGTTAAATTTCC HS_assemblymutate GTATGTACATACCTAAGAGTGGGTCTGCACCGTGTTGTTTGTGACAATCGTAAAATTGCA ********************** *** ************************ ***** * HS_haplotype1 GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC HS_haplotype2 GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC HS_assemblymutate GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC ************************************************************ HS_haplotype1 CAGCTGTTTTTTAGAGACTTTAATGAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC HS_haplotype2 CAGCTGTTTTTTAGAGACTTTAATTAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC HS_assemblymutate CAGCTGTTTTTTAGAGACTTTAATGAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC ************************ *********************************** HS_haplotype1 TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT HS_haplotype2 TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT HS_assemblymutate TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT ************************************************************ HS_haplotype1 GCTCTGCTTTGCAGTATGGTCAGGTGACAGAAACATGGGAGGTAGAGTAGTATATTTAAT HS_haplotype2 GCTCTGCTTTGCAGTATGGTCAGGTGACAAAAACATGGGAGGTAGAGTAGTATATTTAAT HS_assemblymutate GCTCTGCTTTGCAGTATGGTCAGGTGACAGAAACATGGGAGGTAGAGTAGTATATTTAAT ***************************** ****************************** HS_haplotype1 TGAACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG HS_haplotype2 TGTACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG HS_assemblymutate TGTACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG ** ********************************************************* HS_haplotype1 AATGTTTCCTTCTGTACGGAAAGATGTCCTTTGGAATATCTCAGTTTAGTCTAATCCCCT HS_haplotype2 AATGTTTCCTTCTGTACGGAAAGATGTCATTTGGAATATTTCAGTTTAGTCTAATCCCCT HS_assemblymutate AATGTTTCCTTCTGTACGGAAAGATGTCCTTTGGAATATCTCAGTTTAGTCTAATCCCCT **************************** ********** ******************** HS_haplotype1 TTTTCTTCCGACTACATGTGTATTTTTGTAGATGCTTGGCCTACAGCCTCTTTCTCGGCA HS_haplotype2 TTTTCTTCCGACTACATGTGTATTTTTGCAGATGCTTGGCATACAGTCTCTTTCTCGGCA HS_assemblymutate TTTTCTTCCGACTACATGTGTATTTTTGCAGATGCTTGGCATACAGTCTCTTTCTCGGCA **************************** *********** ***** ************* HS_haplotype1 CTCCGCTTTGGGAGTGGGGCAGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT HS_haplotype2 CTCCGCTTTGGGAGTGGGGCTGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT HS_assemblymutate CTCCGCTTTGGGAGTGGGGCAGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT ******************** *************************************** HS_haplotype1 CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG HS_haplotype2 CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG HS_assemblymutate CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG ************************************************************ HS_haplotype1 GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG HS_haplotype2 GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG HS_assemblymutate GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG ************************************************************ HS_haplotype1 CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC HS_haplotype2 CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC HS_assemblymutate CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC ************************************************************ HS_haplotype1 ATTAATCATGTGCGTGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG HS_haplotype2 ATTAATGATGTGCATGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG HS_assemblymutate ATTAATCATGTGCGTGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG ****** ****** ********************************************** HS_haplotype1 TGCATCATTTGTGTCCTGCTGATGGGCTGTGTATATGGGGGCAAGACATTCTCTACTTTT HS_haplotype2 TGCATCATTTGTGTCCTGCTGATGGGCTGGGTATATGGGGGCAAGACATTCTCTACTTTT HS_assemblymutate TGCATCATTTGTGTCCTGCTGATGGGCTGGGTATATGGGGGCAAGACATTCTCTACTTTT ***************************** ****************************** HS_haplotype1 CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC HS_haplotype2 CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC HS_assemblymutate CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC ************************************************************ HS_haplotype1 AGACTTCTTAAGAGAATTTGCACTTTAAAGGCTGTAAAAACCATCTTTGTAGAGTGTATA HS_haplotype2 AGACTTCTTAAGAGAATTTGCACTTTACAGGCTGTAAAAACCATCTTTGTAGAGTGTATA HS_assemblymutate AGACTTCTTAAGAGAATTTGCACTTTACAGGCTGTAAAAACCATCTTTGTAGAGTGTATA *************************** ******************************** HS_haplotype1 GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA HS_haplotype2 GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA HS_assemblymutate GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA ************************************************************ HS_haplotype1 TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGATTTAAATAATCCAGAAGAGAGGCTGCA HS_haplotype2 TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGGTTTAAATAATCCAGAAGAGAGGCTGCA HS_assemblymutate TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGGTTTAAATAATCCAGAAGAGAGGCTGCA ******************************** *************************** HS_haplotype1 CTCGTGACCTCCCAGTTATTGCATTGTAGTGCTGGCCAGTGGAGGGACGAGTATATAATT HS_haplotype2 CTCCTGACCTCCCACTTATTGCATTGTAGGGCTGGCCAGTGGAGGGAAGAGTATATAATT HS_assemblymutate CTCGTGACCTCCCAGTTATTGCATTGTAGTGCTGGCCAGTGGAGGGACGAGTATATAATT *** ********** ************** ***************** ************ HS_haplotype1 TCTCCCAGCCCGTCGGTGGTGTGGTGGTTTTTAATCTTTGCATGGCTCAACTCAATTGCT HS_haplotype2 TCTCCCAGCCCCTCGGTGGGGTGGTGGTTTTTAATCTTTGCATGGCTCAACTCAATTGCT HS_assemblymutate TCTTCCAGCCCCTCGGTTGGGTGGTGGTTTTTAATCTTTGCATGGCTCAAGTCAATTGCT *** ******* ***** * ****************************** ********* HS_haplotype1 CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA HS_haplotype2 CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA HS_assemblymutate CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA ************************************************************ HS_haplotype1 AAGTGTCAACTCTCCAATCTCATCTATTCATCAGGTAAATAACGCCCACTGAGCTATAGG HS_haplotype2 AAGTGTCAACTCTCCAATCTCATCTATTCATCACGTAAATAACGCCCACTGAGCTATAGG HS_assemblymutate AAGTGTCAACTCTCCAATCTCATCTATTCATCAGGTAAATAACGCCCACTGAGCTATAGG ********************************* ************************** HS_haplotype1 GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT HS_haplotype2 GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT HS_assemblymutate GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT ************************************************************ HS_haplotype1 TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGGAACTACAGTGGCA HS_haplotype2 TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGGAACTACAGTGGCA HS_assemblymutate TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGCAACTACAGTGACA ********************************************** ********** ** HS_haplotype1 TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAATACCACTGTGCAGTT HS_haplotype2 TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAATACCACTGTGCAGTT HS_assemblymutate TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAACACCACTATGCAGTT ********************************************* ****** ******* HS_haplotype1 CCACCATCTAACTAACTCCCCACCTGTAATCCCTCCAAGTTTGTCACCTCTCCTGTACTT HS_haplotype2 CCACCATCTAACTAACTCCCCACCTGTAATCCCTCCAAGTTTGTCACCTCTCCTGTACTT HS_assemblymutate CCACCATCTAACTAACTCCCCACCTGTAATACCTCCAAGTTTGTCACCTCTCCTGTACTT ****************************** ***************************** HS_haplotype1 CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGTATACAAATCCCTCAGCATTT HS_haplotype2 CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGCATACAAATCCCTCAGCATTT HS_assemblymutate CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGTATACAAATCCCTCAGCATTT *************************************** ******************** HS_haplotype1 CAGAAGTAAGTAAACCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGTATTGTT HS_haplotype2 CAGAAGTAAGTAAACCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGTATTGTT HS_assemblymutate CAGAAGTAAGGAAAGCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGGACTGTT ********** *** ************************************** * **** HS_haplotype1 TGTGAGAAGTTGAGAAATTATCATAACCTAATTTATGAGCAACATGTCATATGTTAACAT HS_haplotype2 TGTGAGAATTTGAGAAATTATCATAACCTAATTTATGGGCAACATGTCATATGTTAACAT HS_assemblymutate TGTGAGAAGTTGAGAAATTCTCATAACCTAATTTATGAGCGGCATGTCATATGTTAACAT ******** ********** ***************** ** ****************** HS_haplotype1 TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAGTCACTTCTCCTCTGAGCCCTATCAGC HS_haplotype2 TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAATCACTTCTCCTCTGAGCCCTATCAGC HS_assemblymutate TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAATCACTTCTCCTCTGAGCCCTATCAGC ********************************* ************************** HS_haplotype1 CAAAAAGAATTAGAAGATCTCGGGAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA HS_haplotype2 CAAAAAGAATTAGAAGATATCGGCAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA HS_assemblymutate CAAAAAGAATTAGAAGATCTCGGGAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA ****************** **** ************************************ HS_haplotype1 ATATTTTTAAGACTCAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGGTACCA HS_haplotype2 ATATTTTTAAGACTAAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGGTACCA HS_assemblymutate ATATTTTTAAGACTCAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGTTACCA ************** *************************************** ***** HS_haplotype1 CGCCTGGATGAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG HS_haplotype2 CGCCTGGATGAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG HS_assemblymutate CGCCTTGATTAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG ***** *** ************************************************** HS_haplotype1 ATCATCTGAATAAGATCTATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA HS_haplotype2 ATCATCTGAATAAGATATATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA HS_assemblymutate ATCATCTGAATAAGATATATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA **************** ******************************************* HS_haplotype1 GAACCCAGGTGATGAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA HS_haplotype2 GAACCCAGGTGATCAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA HS_assemblymutate GAACCCAGGTGATGAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA ************* ********************************************** HS_haplotype1 GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCACCCCAGCCTCCCCATCTCA HS_haplotype2 GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCAACCCAGCCTCCCCATCTCA HS_assemblymutate GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCAACCCAGCCTCCCCATCTCA ***************************************** ****************** HS_haplotype1 TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA HS_haplotype2 TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA HS_assemblymutate TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA ************************************************************ HS_haplotype1 TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC HS_haplotype2 TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC HS_assemblymutate TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC ************************************************************ HS_haplotype1 CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGGTGCTTC HS_haplotype2 CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGTTGCTTC HS_assemblymutate CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGGTGCTTC ***************************************************** ****** HS_haplotype1 CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACGAG HS_haplotype2 CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACAAG HS_assemblymutate CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACAAG ********************************************************* ** HS_haplotype1 CAAACTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCATCCCAAAGTCAAGG HS_haplotype2 CAACCTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCCTCCCAAAGTCAAGG HS_assemblymutate CAACCTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCATCCCAAAGTCAAGG *** ***************************************** ************** HS_haplotype1 ATCGTTGCTGTGTACTTTTAGAAATAATAAAAAAGAATTAATAGCGATTTTTCTCTCTGA HS_haplotype2 ATCGTTGCTGTGTACTTTTAGAACTAATAAAAACGAATTGATAGCGATTTTTCTCTCTTA HS_assemblymutate ATCGTTGCTGTGTACTTTTAGAACTAATAAAAACGAATTGATAGCGATTTTTCTCTCTTA *********************** ********* ***** ****************** * HS_haplotype1 GCACCTGTATTATACAGAAAGTTAATTCCCCACCTGGTTGTGTCAACAAAGCAAACAACT HS_haplotype2 GCACCTGTATTATACAGAAAGTTAATTCCCCACCTCGTTGTGTCAACAAAGCAAACAACT HS_assemblymutate GCACCTGTATTATACAGAAAGTTAATTCCCCACCTCGTTGTGTCAACAAAGCAAACAACT *********************************** ************************ HS_haplotype1 GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAAGTTGAG HS_haplotype2 GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAACTTGAG HS_assemblymutate GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAACTTGAG ****************************************************** ***** HS_haplotype1 CCAGATGCGGGTTTCTTTTCCCTCCAATACGGTGGATGAGTGCCTCCTTGAAAGAGCCAA HS_haplotype2 CCAGATTCGGGTTTCTTTTCCTTCCAAAATGGTGGATGAGTGCCTCCTTGGAAGAGCCAA HS_assemblymutate CCAGATGCGGGTTTCTTTCCCCTCCACTCCGGTGGATGAGTGCCCACTTGAAAGTGCCAG ****** *********** ** **** ************** **** *** **** HS_haplotype1 CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGTAGGGACCGTATCTCAAATGCT HS_haplotype2 CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGGAGGGACCGTATCTCAACTGCT HS_assemblymutate CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGGAGGGACCGTATCTCAACTGCT ************************************** **************** **** HS_haplotype1 AATTAACTATCATTTTCAGTTACTTAGCCTATAATTTAAGTAGAAAAAGGTACAGCTCCT HS_haplotype2 AATTAACTATCATTTTCAGTTACTTAGCCTGTAATTTAAGTAGAAAAAGGTACAGCTCAT HS_assemblymutate AATTAACTATCATTTTCAGTTACTTAGCCTATAATTTAAGTAGAAAAAGGTACAGCTCCT ****************************** *************************** * HS_haplotype1 GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCATGCGGAGTAGAAAGGATCCTGCGGT HS_haplotype2 GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCAGGCGGAGAAGAAAGGATCCTGCGGT HS_assemblymutate GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCAGGCGGAGAAGAAAGGATCCTGCGGT *********************************** ****** ***************** HS_haplotype1 CTACTGGAGTCCATACTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT HS_haplotype2 CTACTGGAGTCCATAGTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT HS_assemblymutate CTACTGGAGTCCATACTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT *************** ******************************************** HS_haplotype1 CCTGAAAAACCCCAAGTAGAGACCACTGGGATAGTGAGCTCCTGCGCCCATTTTAGTGGT HS_haplotype2 CCTGAAAAACCCCAAGTAGAGACCACTGGGTTAGTGAGCTCCTGCGCCCATTTAAGTGGT HS_assemblymutate CCTGAAAAACCCCAAGTAGAGACCACTGGGTTAGTGAGCTCCTGCGCCCATTTAAGTGGT ****************************** ********************** ****** HS_haplotype1 CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA HS_haplotype2 CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA HS_assemblymutate CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA ************************************************************ HS_haplotype1 AGCCCTACAGTGTAGGGCAGATGCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA HS_haplotype2 AGCCCTACAGTGTAGGGCAGATTCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA HS_assemblymutate AGCCCTACAGTGTAGGGCAGATTCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA ********************** ************************************* HS_haplotype1 AGCCATATAGACCAAAAGAGCGAGATGAAGGTGGCAGGTGCTTCTGTCAGCACCACGAAA HS_haplotype2 AGCCATATAGACCAGAAGAGCGAGATGAAGGTGGCAGGTGCTTCTGGCAGCACCACGAAA HS_assemblymutate AGCCATAGAGACCAAAAGAGTGAGATGAAGGTGGCAGGTGCTTCTGTCAGCACCACGAAA ******* ****** ***** ************************* ************* HS_haplotype1 TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA HS_haplotype2 TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA HS_assemblymutate TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA ************************************************************ HS_haplotype1 ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA HS_haplotype2 ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA HS_assemblymutate ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA ************************************************************ HS_haplotype1 AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTTCAGAAAAAAACAAC HS_haplotype2 AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTGCAGAAAAAAACAAC HS_assemblymutate AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTGCAGAAAAAAACAAC ********************************************* ************** HS_haplotype1 TACCCTACTTTGAGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTGG HS_haplotype2 TACCCTACTTTGTGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTTG HS_assemblymutate TACCCTACTTTGAGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTGG ************ ********************************************* * HS_haplotype1 GTTTCAGGCTAAAATAGAATGGTGTTAGCAAGGCGCGTGAAATTCCTTTTGAGTCAAAAA HS_haplotype2 GTTTCAGGCTAAAATAGAATGGTGTTATCAAGGCGCTAGAAATTCCTTTTGAGTCAAAAA HS_assemblymutate GTTTCAGGCTAAAATAGAATGGTGTTATCAAGGCGCTAGAAATTCCTTTTGAGTCAAAAA *************************** ******** ********************** HS_haplotype1 ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG HS_haplotype2 ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG HS_assemblymutate ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG ************************************************************ HS_haplotype1 TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCCAAAAATAC HS_haplotype2 TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCGAAAAATAC HS_assemblymutate TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCGAATAATAC *************************************************** ** ***** HS_haplotype1 TTATTTCGAAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG HS_haplotype2 TTATTTCGGAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG HS_assemblymutate TTGTTTCGAAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG ** ***** *************************************************** HS_haplotype1 TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC HS_haplotype2 TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC HS_assemblymutate TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC ************************************************************ HS_haplotype1 CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG HS_haplotype2 CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG HS_assemblymutate CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG ************************************************************ HS_haplotype1 GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT HS_haplotype2 GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT HS_assemblymutate GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT ************************************************************ HS_haplotype1 AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA HS_haplotype2 AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA HS_assemblymutate AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA ************************************************************ HS_haplotype1 AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA HS_haplotype2 AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA HS_assemblymutate AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA ************************************************************ HS_haplotype1 TGTGAGTTCTGGCAGGCAACACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA HS_haplotype2 TGTGAGTTCTGGCAGGCACCACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA HS_assemblymutate TGTGAGTTCTGGCAGGCAACACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA ****************** ***************************************** HS_haplotype1 CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT HS_haplotype2 CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT HS_assemblymutate CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT ************************************************************ HS_haplotype1 GCAGTAGACGTTCCTTGCTATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG HS_haplotype2 GCGGTAGACGTTCCTTGATATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG HS_assemblymutate GCAGTAGACGTTCCTTGCTATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG ** ************** ****************************************** HS_haplotype1 ATATAATCATTGATCCTGACCCCTAATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC HS_haplotype2 ATATAATCATTGATCCTGACCTCTCATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC HS_assemblymutate ATATAATCATTGATCCTGACCTCTCATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC ********************* ** *********************************** HS_haplotype1 ACTGGGTTTAGTATCTATACACAGTCTTCTCTTCCTTACCAGTGTGGGAAGGAAAGAGGG HS_haplotype2 ACTAGGTTTAGTATCTATAAACAGTCTTCTCTTCCTTACCAGTATGGGAAGGAAAGAGGG HS_assemblymutate ACTGGGTTTAGTATCTATACACAGTCTTCTCTTCCTTACCAGTGTGGGAAGGAAAGAGGG *** *************** *********************** **************** HS_haplotype1 AAAAAGAACACAAGATACGCACCGCAGCTATGCAATTATATAATGTATGTATATGAAAAT HS_haplotype2 ACAAAGAACACAAGATACGCACCGCAGCTATGCAATTATATAATGTATGTATATGAAAAT HS_assemblymutate ACAAAGAACTCAAGATACGCACCGCAGCTATGCAATTAAATCATGTATGTGTAGGAAAAT * ******* **************************** ** ******** ** ****** HS_haplotype1 ATTTTCTTCACATGCGTGAGAGTCCCAGGCTGCTTTATGTAATCTGGCGGTGTACTAGCC HS_haplotype2 ACTTTCTTCACATGCGTGAGAGTCCCAGGCTGCTTTATGTAATCTGGCGGTGTACTAGCC HS_assemblymutate ATTTGCTTCACATGCGTGAGAGTCCCAGGCTGCTTCATTTAATCTGGCGGTGTACTAGCC * ** ****************************** ** ********************* HS_haplotype1 AGGCATGCCTGTCCCATTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG HS_haplotype2 AGGCATGCCTGTCCCAGTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG HS_assemblymutate AGGCATGCCTGTCCCAGTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG **************** ******************************************* HS_haplotype1 GGGGGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT HS_haplotype2 CGGAGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT HS_assemblymutate GGGGGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT ** ******************************************************** HS_haplotype1 TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG HS_haplotype2 TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG HS_assemblymutate TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG ************************************************************ HS_haplotype1 CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG HS_haplotype2 CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG HS_assemblymutate CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG ************************************************************ HS_haplotype1 TAAGTTGATCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGCTCACAGAGGTGTGTT HS_haplotype2 TAAGTTGACCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGATCACAGAGGTGTGTT HS_assemblymutate TAAGTCAACCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGATCACAGAGGTGTGTT ***** * *********************************** *************** HS_haplotype1 TTTTTCTAGCTAAAATGCAGTATCCAAGATATTTTTGAATGGAGGTGTTACAATTGTAAC HS_haplotype2 TTTTTCTAGCTAAAATGCAGTATCCAAGATATTTTTGAATGGAGGTGTTACAATTGTAAC HS_assemblymutate TTTTTCTAGCTAAAATGCAGTATCCAAGACGTTTTTGAATGGAGGTGTTATCATTGTAAC ***************************** ******************* ******** HS_haplotype1 TCATTGTTTCAGTGGAGAGGCGCCACTACTGGCTCCGTCCCTCCCGTCCTCACGACTTAA HS_haplotype2 TCATTGTTTCAGTGGAGAGGCGCCACTAATGGCTCCGTCCCTCCCGTCCTCACGACTTAA HS_assemblymutate TCATAGTTTCAGTGGAGAGGCGCCACCAATGGCTCCGTCCGTCCCGTCCTCACGACTTAA **** ********************* * *********** ******************* HS_haplotype1 ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA HS_haplotype2 ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA HS_assemblymutate ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA ************************************************************ HS_haplotype1 TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT HS_haplotype2 TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT HS_assemblymutate TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT ************************************************************ HS_haplotype1 GCGATTCCACAGGGTTCCAATGTTTCTCAGACGCCAACTTGTCACTCTCAAAAGAGGTTC HS_haplotype2 GCGATTCCACAGGATTCCAATGTTTCTCAGATGCCATCTTGTCACTCTCAAAAGAGGTTC HS_assemblymutate GCGATTCCACAGGGTTCCAATGTTTCTCAGACGCCAACTTGTCACTCTCAAAAGAGGTTC ************* ***************** **** *********************** HS_haplotype1 CTGCTGGATGAGACCCATATATAAGTACAATATAAACAGTACCTGGCCTGAGGATCCAAG HS_haplotype2 CTGCTGGATGAGACCCATATATAAGTACAATATAACCAGTACCTGGCCTGAGGATCCAAG HS_assemblymutate CTGCTGGATGAGACCCATATATAAGTACAATGTAACCAGTATCTGGCCTGAGGATCCAAG ******************************* *** ***** ****************** HS_haplotype1 CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCGAT HS_haplotype2 CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCAAT HS_assemblymutate CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCGAT ********************************************************* ** HS_haplotype1 TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA HS_haplotype2 TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA HS_assemblymutate TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA ************************************************************ HS_haplotype1 CCCCTGCTACTTGAATCAGACGGTGCGCCTGTCTCAGGGGCTATTAGTCATGGCCGGGCC HS_haplotype2 CCCCTGCTACTTCAATCAGACGGTGCGCCTGTCTCAGGGGCTATAAGTCATGGCCGGGCC HS_assemblymutate CCCCTGCTACTTGAATCAGACGGTGCGCCTGTCTCAGGGGCTATTAGTCATGGCCGGGCC ************ ******************************* *************** HS_haplotype1 AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCA HS_haplotype2 AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCC HS_assemblymutate AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCC *********************************************************** HS_haplotype1 GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCAAATCCTCCACCCGTTGGAG HS_haplotype2 GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCCAATCCTCCCCCAGTTGGAG HS_assemblymutate GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCAAATCCTCCACCCGTTGGAG **************************************** ******** ** ******* HS_haplotype1 CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT HS_haplotype2 CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT HS_assemblymutate CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT ************************************************************ HS_haplotype1 ACACATAACACCAGCTTCTGTTGTCACAAAAACGATGCCTAAATAAGTGCTTAGACTGGT HS_haplotype2 ACACATAACACCAGCTTCTGTTGTCACCAAAACGATGCCGAAATAAGTGCTTAGACTGGT HS_assemblymutate ACACATAACACCAGCTTCTGTTGTCACAAAAACGATGCCTAAATAAGTGCTTAGACTGGT *************************** *********** ******************** HS_haplotype1 GGACGAGAGGTATTTCAACCGAGAGTCTCACTAAAAAAACTATATAGAGACCCCGCCAGT HS_haplotype2 GGACTAGAGGTATTTCAACCTAGAGTCTCACTAAAAAAACTATATAGAGACCCCGTCAGT HS_assemblymutate GGACTAGAGGTATTTCAACCTAGAGTCTCACTAAAAAAACTATATAGAGACCCCGTCAGT **** *************** ********************************** **** HS_haplotype1 CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCAGATAAGCA HS_haplotype2 CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCACATAAGCA HS_assemblymutate CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCAGATAAGCA **************************************************** ******* HS_haplotype1 CTCTCACAGGAGAGCCGGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG HS_haplotype2 CTCACACAGGAGAGCCAGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG HS_assemblymutate CTCTCACAGGAGAGCCGGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG *** ************ ******************************************* HS_haplotype1 TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAAGATATTAAGTTTGGAAGGCTCAGACTCC HS_haplotype2 TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAACATATTAAGTTTGGAAGGCTCAGACTCC HS_assemblymutate TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAAAATATTCAGTTTGGAAGGCTCAGACTCC ******************************** ***** ********************* HS_haplotype1 TGGGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA HS_haplotype2 TGTGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA HS_assemblymutate TGTGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA ** ********************************************************* HS_haplotype1 TGTGGCTTTTTAAAGCCAGAAGACCCAGGCTCACAGAGATGAGGCTGAGCCTGACAGGCG HS_haplotype2 TGTGGCTTTTTAAGGCCAGAAGACCCAGGCTCACAGAGATGAGGCTGAGCCTGCCAGGCG HS_assemblymutate TGTGGCTTTTTAAAGCCCAAAGACCCAGGCTCACAGAGGTGAGGCTGAGCCTGACAGGCG ************* *** ******************* ************** ****** HS_haplotype1 AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGAGTGTTACCCTTCCCTTGATTATAGT HS_haplotype2 AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGATTGTTACCCTTCCCTTGATTATAGT HS_assemblymutate AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGATTGTTACCCTTCCCTTGATTATAGT *********************************** ************************ HS_haplotype1 AAATTAAAAAAGTGCTCCTCCCGGCTCTAAATAGGTACTTCTGGATGGGAGGCTCACCTG HS_haplotype2 AAATTAAAAAAGTGCTCCTCCCGGCTCTAGATAGGTACTTCTGGATGGGAGGCTCACCTG HS_assemblymutate AAATTAAAAAAGTGCTCCTCCCGGCTCTAAATAGGTACTTCTGGATGGGAGGCTCACCTG ***************************** ****************************** HS_haplotype1 CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA HS_haplotype2 CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA HS_assemblymutate CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA ************************************************************ HS_haplotype1 TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTAGAATTGAACTAAATGGTACGCAT HS_haplotype2 TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTGGAATTGAACTAAATGGTACACAT HS_assemblymutate TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTAGAATTGAACTAAATGGTACGCAT ************************************ ******************* *** HS_haplotype1 TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC HS_haplotype2 TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC HS_assemblymutate TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC ************************************************************ HS_haplotype1 TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC HS_haplotype2 TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC HS_assemblymutate TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC ************************************************************ HS_haplotype1 CAGGAGGGGCTCCAGCTCACTTTTTTAGTGGGACTCCACAAGCGAGAATAAATGCTGGAA HS_haplotype2 CAGGAGGGGTTCCAGCACACTTTTTTAGTGGCACTCCACAAGAGAGAATAAATGCTGGAA HS_assemblymutate CAGGAGGGGTTCCAGCACACTTTTTTAGTGGCACTCCACAAGAGAGAATAAATGCTGGAA ********* ****** ************** ********** ***************** HS_haplotype1 AGGGCGTGGCTGAATCTAAGAGCCTTACAAAACAACCTGACAGGGGCTTCCCTTCCTGGC HS_haplotype2 AGGGCGTGACTGAATCTAAGAGCCTTACATAACAACCTGACAGGGGCTTCCCTTCCTGGC HS_assemblymutate AGGGCGTGGCTGAATCTAAGAGCCTTACAAAACAACCTGACAGGGGCTTCCCTTCCTGGC ******** ******************** ****************************** HS_haplotype1 ACAACTATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA HS_haplotype2 ACAAATATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA HS_assemblymutate ACAAATATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA **** ******************************************************* HS_haplotype1 CAAAATAGTAGCCTGGATCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG HS_haplotype2 CAAAATAGTAGCCTGGCTCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG HS_assemblymutate CAAAATAGTAGCCTGGATCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG **************** ******************************************* HS_haplotype1 CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAAGAATATGCATTAGAGCGACTC HS_haplotype2 CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAGGAATATGCATTAGAGCGACTC HS_assemblymutate CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAGGAATATGCATTAGAGCGACTC ************************************** ********************* HS_haplotype1 TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG HS_haplotype2 TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG HS_assemblymutate TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG ************************************************************ HS_haplotype1 GGTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCCACCCCACT HS_haplotype2 GTTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCTACCCCACT HS_assemblymutate GTTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCTACCCCACT * ************************************************* ******** HS_haplotype1 TGTAAGAGCGGCCTCCCACCTTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA HS_haplotype2 TGTAAGAGCGGCCTCCCACCGTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA HS_assemblymutate TGTAAGAGCGGCCTCCCACCTTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA ******************** *************************************** HS_haplotype1 AACCCGGGCTTCCCTCCTCCCCCACGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA HS_haplotype2 AACCCGGGCTTCCCTCCTCCCCCAGGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA HS_assemblymutate AACCCGGGCTTCCCTCCTCCCCCAGGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA ************************ *********************************** HS_haplotype1 AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAAATAAATAAATATAATAGAA HS_haplotype2 AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAGAAAAAGAAATATAATAGAA HS_assemblymutate AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAAATAAATAAATATAATAGAA **************************************** * *** ************* HS_haplotype1 AAACAATAAGATATTATGTTATGAACTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT HS_haplotype2 AAACAATAAGATATTATTTTATGAGCTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT HS_assemblymutate AAACAATAAGATATTATTTTATGAGCTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT ***************** ****** *********************************** HS_haplotype1 GGCAAGCACTTTGGTCCCACCCCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA HS_haplotype2 GGCAACCACTTTGGTCCCACCGCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA HS_assemblymutate GGCAAGCACTTTGGTCCCACCCCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA ***** *************** ************************************** HS_haplotype1 ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAACTGTGATCTAGACA HS_haplotype2 ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAAATGTGATCTAGACA HS_assemblymutate ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAAATGTGATCTAGACA ********************************************** ************* HS_haplotype1 GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG HS_haplotype2 GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG HS_assemblymutate GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG ************************************************************ HS_haplotype1 CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA HS_haplotype2 CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA HS_assemblymutate CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA ************************************************************ HS_haplotype1 ACAACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC HS_haplotype2 ACCACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC HS_assemblymutate ACAACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC ** ********************************************************* HS_haplotype1 TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCATCTGTTTTCATAAATAAATGGCTA HS_haplotype2 TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCACCTGTTTTCATAAATAAATGGCTA HS_assemblymutate TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCACCTGTTTTCATAAATAAATGGCTA ************************************ *********************** HS_haplotype1 CTATGAGACCACCTCACGCGATTGCAGGAGTTCTTTTGTTCAGGAGACCAGTACAGAGAT HS_haplotype2 CTATGAGACCACCTCAGGCGATTGCAGGAGATCCTTTGTTCAGGAGACCAGTACAGAGAT HS_assemblymutate CTATGAGACCACCTCACGCGATTGCAGGAGTTCTTTTGTTCAGGAGACCAGTACAGAGAT **************** ************* ** ************************** HS_haplotype1 TTCTCAGTTTATCTACCCTCTATACCACAAAGGAAGCCTCAGAGTAGGGGGTTAAATGCA HS_haplotype2 TTCTCAGTTTATCTACCCTCTATACCAAAAAGGAAGCGTCAGAGTAGGGGGTTAAATGCA HS_assemblymutate TTCTCAGTTTATCTACCCTCTATACCAAAAAGGAAGCGTCAGAGTAGGGGGTTAAATGCA *************************** ********* ********************** HS_haplotype1 CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGAGAAGCTGGTA HS_haplotype2 CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGGGAAGCTGGTA HS_assemblymutate CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGAGAAGCTGGTA ************************************************* ********** HS_haplotype1 TGGTCGGTTCATACCTTTCCCTGGGGCTCGCAATGTCAGTCACTGGGAAATCCCAAATGT HS_haplotype2 TGGTCGGTTCATACCTTTCCCTGGGGCTCCCAATGTCAGTCACTGGGAAATCCCAAATGT HS_assemblymutate TGGTCGGTTCATACCTTTCCCTGGGGCTCCCAATGTCAGTCACTGGGAAATCCCAAATGT ***************************** ****************************** HS_haplotype1 CATTTGAGATAAGTGGCTGGTAGATGTATGTATATACACCATCACGGTTGGCAGAAAATT HS_haplotype2 CATTTGAGATAAGTGGCTGGTAGATAGATGTATATACACCATCACGGTTGGCAGAAAATT HS_assemblymutate CATTTGAGATAAGTGGCTGGTAGATGTATGTATATACACCATCACGGTTGGCAGAAAATT ************************* ********************************* HS_haplotype1 TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG HS_haplotype2 TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG HS_assemblymutate TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG ************************************************************ HS_haplotype1 CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTAGAGGAGTTCAA HS_haplotype2 CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTACAGGAGTTCAA HS_assemblymutate CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTAGAGGAGTTCAA ************************************************* ********** HS_haplotype1 GCCCCATTTATTAATGCCTGGGCTCTGTCTGGAGGCGCAAAACAAAATCACTCCATTCAG HS_haplotype2 GCCCCATTTATTAATGCCTGGGCTCTGTCTGGCGGCGCAAAACAAAATCACTCCATTCTG HS_assemblymutate GCCCCATTTATTAATGCCTGGGCTCTGTCTGGCGGCGCAAAACAAAATCACTCCATTCTG ******************************** ************************* * HS_haplotype1 ACGATCATTGAAATACAGGCGGCACACAGCTTTATAAAAACTCTACTTTTAGCCGAAGCC HS_haplotype2 ACGATCATTGAAATACAGGCGGCACACAGCTTTCTAAAAACTCTACTTTTAGCCGAGGCC HS_assemblymutate ACGATCATTGAAATACAGGCGGCACACAGCTTTATAAAAACTCTACTTTTAGCCGAAGCC ********************************* ********************** *** HS_haplotype1 CCGCTGTTGTTTTGCTACAAAGAATTTATTCAAGACTGTGTTGGATTACAAAGAGGCTGC HS_haplotype2 CCGCAGTTGTTTTGCTAAAAAGAATTTATTCAAGGCTGTGTTGGATTACAAAGAGGCTGC HS_assemblymutate CCGCTGTTGTTTTGCTACAAAGAATTTATTCAAGACTGTGTTGGATTACAAAGAGGCTGC **** ************ **************** ************************* HS_haplotype1 CACACAAGTGGCTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG HS_haplotype2 CACACAAGTGACTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG HS_assemblymutate CACACAAGTGGCTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG ********** ************************************************* HS_haplotype1 GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATCGATCACTACTACAGTAAGCAGCGTAA HS_haplotype2 GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATTGATCACTACTACAGTAAGCAGCGTAA HS_assemblymutate GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATTGATCACTACTACAGTAAGCAGCGTAA ********************************* ************************** HS_haplotype1 GTAACTCCCAGGCCTCCCTGAAGAAAGTTCAATTTTAGAGAGTCTCGGTCAAGCAGATGG HS_haplotype2 GTAACTCCCAGGCCTCCCTGAAGAAAGATCACTTTTAGAGAGTCTCGGTCAAGCAGATGG HS_assemblymutate GTAACTCCCAGGCCTCCCTGAAGAAAGTTCAATTTTAGAGAGTCTCGGTCAAGCAGATGG *************************** *** **************************** HS_haplotype1 GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT HS_haplotype2 GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT HS_assemblymutate GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT ************************************************************ HS_haplotype1 GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC HS_haplotype2 GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC HS_assemblymutate GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC ************************************************************ HS_haplotype1 ATGTAGGAGACCAGATCACATCGACAATGAATTATTTCATAAAACTCCAGCTAGTAGTCA HS_haplotype2 CTGTAGGAGACCAGATCACATCCACAATGAATTATTTCATAAAACTCCAGCTTGTAGTCA HS_assemblymutate CTGTAGGAGACCAGATCACATCCACAATGAATTATTTCATAAAACTCCAGCTTGTAGTCA ********************* ***************************** ******* HS_haplotype1 TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTGGGTTTTCTCACTGAATCTGA HS_haplotype2 TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTCGGTTTTCTCACTGAATCTGA HS_assemblymutate TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTGGGTTTTCTCACTGAATCTGA *************************************** ******************** HS_haplotype1 TTTGGATCGCTGGGTTCGTGCTGATGAGAGAGAATCAACATGTCTGCCACATTCATCCTC HS_haplotype2 TTTGGATCGCTGGGTTCGTGCTGATGACAGAGAATCAACATGTCTGCCACATTCATCCTC HS_assemblymutate TTTGGATCGCTGGGTTCGTGCTGATGACAGAGAATCAACATGTCTGCCACATTCATCCTC *************************** ******************************** HS_haplotype1 AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAATCACCTTGC HS_haplotype2 AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAACCACCTTGC HS_assemblymutate AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAATCACCTTGC *************************************************** ******** HS_haplotype1 CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAAAGTGGCACAATGTTTG HS_haplotype2 CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAAAGTGGCACAATGTTTG HS_assemblymutate CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAGAGTGACACAATGTTTG ******************************************* **** *********** HS_haplotype1 AACCCATATTTTCTTTCTTCATGTTGTAGTGATTCTAATGTCCACGACTCACTCCAGGCA HS_haplotype2 AACCCATATCTTCTTTCTTCATGTTGTAGTGATTCTAATGTCCACGACTCACTCCAGGCA HS_assemblymutate AACCCGTATTTTCTTTCTTCATGCTGTAGTTATTCTAATGTCCACGACGCACTCCAGGCA ***** *** ************* ****** ***************** *********** HS_haplotype1 GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC HS_haplotype2 GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC HS_assemblymutate GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC ************************************************************ HS_haplotype1 CAAGATTATTTCCATAGAATTGGCTAGAAAAGAGGATCTAGATAGTAAGTTGTCAATGAT HS_haplotype2 CAAGATTATTTCCATAGAATTGGTTAGAAAAGAGGATCTAGATAGTATGTTGTCAATGAT HS_assemblymutate CAAGATTATTTCCATAGAATTGGCTAGAAAAGAGGATCTAGATAGTAAGTTGTCAATGAT *********************** *********************** ************ HS_haplotype1 GAACCTGTCAAGTGCTAATCCTGCGTGTGTGTTTTGTTATGGAAGATGGATAAGTGATTT HS_haplotype2 GAACCTGTCAAGTGCTAATCCTGCTTGTGTGTTTTGTTATGGAAGATGGATAAGTGATTT HS_assemblymutate GAACCTGTCAAGTGCCAATCCTGCTTGTGTGATTTGTTATGGAAGATGGATAAGTGATTT *************** ******** ****** **************************** HS_haplotype1 GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT HS_haplotype2 GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT HS_assemblymutate GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT ************************************************************ HS_haplotype1 CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAGGTTAGAGAATGAACAGGTGCCTGGAT HS_haplotype2 CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAAGTTACAGAATGAACAGGTGCCTGGAT HS_assemblymutate CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAAGTTACAGAATGAACAGGTGCCTGGAT ********************************* **** ********************* HS_haplotype1 TACTGTCCAAAGCTTCTTAGATGGAACTGGGATCTCAGCAGAAAAATGTGCTAAGATTCA HS_haplotype2 TACTGTCCAAAGCTTCTGAGATGGAAATGGGAGCTCAGCAGAAAAATGTGCTAAGATTCA HS_assemblymutate TACTGTCCAAAGCTTCTTAGATGGAACTGGGATCTCAGCAGAAAAATGTGCTAAGATTCA ***************** ******** ***** *************************** HS_haplotype1 TCCAGTTATTGAAAATTATTTCTCTGTCTCGAAGGGATTGCTGGGGACTGCAGTTTTTTG HS_haplotype2 TCCAGTTATTGAAAATTATTTCTCTGTCTCGAAGGGATTGCTGGGAACTGCAGTTTTTTG HS_assemblymutate TCCAGTTATTGAAAATTATTTCTCTGTCTCTAAGAGATTGCTGGGACGTGCAGTTTTTTA ****************************** *** ********** *********** HS_haplotype1 GCTGGCCACTTTCCCTATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT HS_haplotype2 GCTGGCCACTTTCCCGATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT HS_assemblymutate GCTGGCCACTTTCCCTATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT *************** ******************************************** HS_haplotype1 AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG HS_haplotype2 AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG HS_assemblymutate AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG ************************************************************ HS_haplotype1 CCATTCCAGCTTATCTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC HS_haplotype2 CCATTCCAGCTTATTTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC HS_assemblymutate CCATTCCAGCTTATCTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC ************** ********************************************* HS_haplotype1 AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGCAAATTCCTGCTTGGGAGGGAGGCC HS_haplotype2 AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGTAAATGCCTGCTTGGGAGGGAGGCC HS_assemblymutate AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGTAAATGCCTGCATGGGAGGGAGGCG *********************************** **** ***** ************ HS_haplotype1 GAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG HS_haplotype2 GAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG HS_assemblymutate AAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG *********************************************************** HS_haplotype1 GATTAGGGATGTAATGAGCCGTAGTAAAATGATTCTCTCGAACAGTCTGGCCCACCAATA HS_haplotype2 GATTAGGGATGTAATGAGCCATAGTAAAATGATTGTCTCGAACAGTCTGGCCCACCAATA HS_assemblymutate GATTAGGGATGTAATGAGCCATAGTAAAATGATTGTCTCGAACAGTCTGGCCCACCAATA ******************** ************* ************************* HS_haplotype1 TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA HS_haplotype2 TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA HS_assemblymutate TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA ************************************************************ HS_haplotype1 AAGATCGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA HS_haplotype2 AAGATGGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA HS_assemblymutate AAGATGGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA ***** ****************************************************** HS_haplotype1 TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA HS_haplotype2 TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA HS_assemblymutate TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA ************************************************************ HS_haplotype1 ATAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGAGTTCCAAC HS_haplotype2 AAAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGAGTTCCAAC HS_assemblymutate AAAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGTGTTTCAAC * ************************************************* *** **** HS_haplotype1 AACATGCTGTGTATTTCAGACAATGCAGTTTGTTATGCAATGAGGAAGGGAGGAAACCAC HS_haplotype2 AACATGCTGTGTATTTCAGACAATGCAGTTAGTTATGCAATGAGGGAGGGAGGAAACCAC HS_assemblymutate AACATGCTGTGTATTTCAGACAATGCAGTTTGTTATGCAATGAGGAAGGGAGGAAACCAC ****************************** ************** ************** HS_haplotype1 TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTGAGGATGGAAATTTATT HS_haplotype2 TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTTAGGATGGAAATTTATT HS_assemblymutate TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTTAGGATGGAAATTTATT ******************************************* **************** HS_haplotype1 TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA HS_haplotype2 TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA HS_assemblymutate TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA ************************************************************ HS_haplotype1 AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT HS_haplotype2 AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT HS_assemblymutate AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT ************************************************************ HS_haplotype1 GGGCTCATTCAATATAGAGATTCTATCTGGGGAACTTTCCATTTGTGTGTCTCAGGAGGA HS_haplotype2 GGGCTCATTCAATATAGAGATTCTATCTGGGGAACTTTCTATTTGTGTGTCTCAGGAGGA HS_assemblymutate GGGCTCGCTCAATGTAGAGATTCTATCTGGGGAACTTTCCATTTGTGTGTCTCAGGAGGA ****** ***** ************************* ******************** HS_haplotype1 TTAGCAAGGAATGGATGATGTAAGGTTTCTCCCGTTTCTCTGTCACCGAGGTTTCAACCC HS_haplotype2 TTAGCCAGGAAGGGATGATGTAAGGTTTCTCCCTTTTCTCTGTCACCGAGGTTTCAACCC HS_assemblymutate TTAGCCAGGAAGGGATGATGTAAGGTTTCTCCCTTTTCTCTGTCACCGAGGTTTCAACCC ***** ***** ********************* ************************** HS_haplotype1 AGACACTACCCTATGCTGCACATTCTTCATCGGCTCAGACAGCTAATGAGAAGAATAAGT HS_haplotype2 AGACACTACCCTAGGCTGCACATTCTTCATCGGCTCAGGCAGCTAATGAGAAGAATAAGT HS_assemblymutate AGACACTACCCTATGCTGCACATTCTTCATCGGCTCAGACAGCTAATGAGAAGAATAAGT ************* ************************ ********************* HS_haplotype1 TAAGTGAGAATATCTTTAAAACACAGCGTGCCACATTAAAAAATGCCATTCATAGTGTGG HS_haplotype2 TAAGTGAGAATATCTTTAAAACACAGCGTGCCACCTTAAAAAATGCCATTCATAGTGTGG HS_assemblymutate TAAGTGAGAATATCTTTAAAACACAGCGTGCCACCTTAAAAAATGCCATTCATAGTGTGG ********************************** ************************* HS_haplotype1 AAGGTCCCGCCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGATTGGCT HS_haplotype2 AAGGTCCCGTCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGCTTGGCT HS_assemblymutate AAGGTCCCGTCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGATTGGCT ********* ******************************************* ****** HS_haplotype1 GGGCTGCTCACACCAAGTGCAGAAACAGCACCTCAGCAACTTTAGGGGAGCCAATACTAA HS_haplotype2 GGGCTGCTCACACCAAGTGCAGAAACAGCACCTCAGCAACTTTAGGGGAGTCAATACTAA HS_assemblymutate GGGCTGCTCACACCAAATGCAGAAACACCACCTCAGCAACTTTAGGGGAGTCACAACTAA **************** ********** ********************** ** ***** HS_haplotype1 TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGAATGCCACCGTGCTGTAC HS_haplotype2 TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGACTGCCACCGTGCTGTAC HS_assemblymutate TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGAATGCCACCGTGCTGTAC ******************************************* **************** HS_haplotype1 TCATCCAGGAATTAGGTACTGGCCAGCCTCAGAAGCTCTGCAGTGCCCTGCCTTTAACCA HS_haplotype2 TCATCCAGGAATTAGGCACTGACCAGCCTCAGAAGCTCTGCAGTGCCCTGCCTTTAACCA HS_assemblymutate TTATCCAGGAATTAAGCACTGACCAGACTCAGACGCTCTGCAGTGCCCTGCCTTTAACCA * ************ * **** **** ****** ************************** HS_haplotype1 GGGAGGGAGAAAAATAGAAGGCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG HS_haplotype2 GGGAGGGAGAAAAATAGAAGCCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG HS_assemblymutate GGGAGGAACAAAAATAGAAGGCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG ****** * *********** *************************************** HS_haplotype1 TCGACTGGGGCAACAATTGAATGGGGCGGGAGGTATAACACCACTGGGGAGGCGAGGTCC HS_haplotype2 TCGACTGGGGCAACAATTGAATGGGGCCGGAGGTTTAACACCACTGGGGAGGCGAGGTCC HS_assemblymutate TCGACTGGGGCAACAATTGAATGGGGCCGGAGGTTTAACACCACTGGGGAGGCGAGGTCC *************************** ****** ************************* HS_haplotype1 GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGACCTTTCT HS_haplotype2 GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGCCCTTTCT HS_assemblymutate GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGACATTTCT **************************************************** * ***** HS_haplotype1 TTGAAAACATGAGTTTGATTCTCTCACTGAGATCTGCAAGAGGAGACGGTTCTTTTCAAT HS_haplotype2 TTGAATACATGAGTTTGATTCTCTCACTGAGATCTGCAAGAGGAGACGGTTCTTTTCAAT HS_assemblymutate TTGAATACATGAGTTTGATTCTCTCACTGCGATCTGCAAGAGGAGACGGTTCTTTTCAAT ***** *********************** ****************************** HS_haplotype1 TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA HS_haplotype2 TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA HS_assemblymutate TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA ************************************************************ HS_haplotype1 GGAGAGGGCAGAGGAGAAATCTATTTATTTTCCTGGTGGCTAAGAAGGACAGCACCAACC HS_haplotype2 GGAGAGGGCAGAGGAGAAATCTATTTATTATCCTGGTGGCTCAGAAAGACAGCACCAACC HS_assemblymutate GGAGAGGGCAGAGGAGAAATCTATTTATTATCCTGGTGGCTCAGAAAGACAGCACCAACC ***************************** *********** **** ************* HS_haplotype1 ATCTTAGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG HS_haplotype2 ATCTTAGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG HS_assemblymutate CTCTTTGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG **** ****************************************************** HS_haplotype1 AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA HS_haplotype2 AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA HS_assemblymutate AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA ************************************************************ HS_haplotype1 CTAGGAAGGTAGAATAGTGTTGGGCACCATTTGCATTGTCCCTAGGAAGAACATGTTGCA HS_haplotype2 CTAGGAAGGTAGAATAGTGTTGGGCACCATTTGCATTGTCCCTAGGAAGAACATGTTGCA HS_assemblymutate CTAGGAAGGTAGAATAGTGTTCGGCACCGTTTGCATTGTCCCTAGGACGAACATGTTGCA ********************* ****** ****************** ************ HS_haplotype1 TTTTTAACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG HS_haplotype2 TTTTTAACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG HS_assemblymutate TTTTTGACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG ***** ****************************************************** HS_haplotype1 GAGCTCACATATGTGTGCCACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC HS_haplotype2 GAGCTCACATATGTATGCCACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC HS_assemblymutate GAGCTCACATATGTGCGCTACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC ************** ** ***************************************** HS_haplotype1 TGGGAGATCTCCTGACTACTGTCTGACCTCGGGAGGTGAGGAAAATACGTTGATGGTTAC HS_haplotype2 TGGGACATCTCCTGACTACTATCTGACCTCGGGAGGTGAGGAAAATACGTTGATGGTTAC HS_assemblymutate TGGGACATCTCCTGACTACTATCTGACCTCGGGAGGTGAGGAAAATACGTTGATGTTTTC ***** ************** ********************************** ** * HS_haplotype1 CTAGCTGGACAAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA HS_haplotype2 CTAGCTGGACGAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA HS_assemblymutate CTAGCTGGACAAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA ********** ************************************************* HS_haplotype1 AAAAAGACCAAGGAAACTCCATCCAGGTGTGCTCATAAAATCATAAGATAGGGCACGAAA HS_haplotype2 AAAAAGACCAAGGAAACTCCATCCAGGTGTGCTCATAAAATCAAAAGATAGGGCAAGAAA HS_assemblymutate AAAAAGACGAAGGAAATTCCATCCAGGTGTGCTCATAAAATCAAAAGATAGGGCAAGAAA ******** ******* ************************** *********** **** HS_haplotype1 TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCAAAAGGTTAAGGA HS_haplotype2 TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCTAAAGGTTAAGGA HS_assemblymutate TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCAAAAGGTTAAGGA *********************************************** ************ HS_haplotype1 TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG HS_haplotype2 TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG HS_assemblymutate TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG ************************************************************ HS_haplotype1 CCTTGAGCAAGCCTTTGTTTCAGTTACATTTGGCTCTCCTATTGGTCCCCACTATATATT HS_haplotype2 CCCTGAGCAAGCCTTTGTTTCAGTTACATTTGGCTCTCCTATTGGTCCCCACTATATATT HS_assemblymutate CCTTGAGCAAGCCTTTGTTTCAGTTGGATTTGGCTCTCCTATTGGTCCCCACTATATATT ** ********************** ********************************* HS_haplotype1 CAGAAAGTACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTTTAAAAAC HS_haplotype2 CAGAAAATACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTCTAAAAAC HS_assemblymutate CAGAAAATACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTCTAAAAAC ****** ********************************************* ******* HS_haplotype1 AAGAAAATGGATTTTGGGGCTTTGGCACCTTGGGAGACCAAGATAGCTCTATGACAATCC HS_haplotype2 AAGAAAATGGATTTTGGGGCTTTTGCACCTTGGGAGACCAAGATAGCTCTATGACAGTCC HS_assemblymutate AAGAAAATGGATTTTGGGGCTTTGGCACCTTGGGAGACCAAGATAGCTCTATGACAATCC *********************** ******************************** *** HS_haplotype1 AGAGGCTATCTTCGCTAATGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG HS_haplotype2 AGAGGCTATCTTTGGTAATGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG HS_assemblymutate AGAGGCTATCTTTGGTATTGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG ************ * ** ****************************************** HS_haplotype1 ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAAATT HS_haplotype2 ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAAATT HS_assemblymutate ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAGATT ******************************************************** *** HS_haplotype1 ACAGCTCTTGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGCGCCTGGTGTCAGACCAA HS_haplotype2 ACAGCTCTTGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGCGCCTGGTGTCAGACCAA HS_assemblymutate ACAGCTCTCGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGTGCCTGGTGTCAGACCAA ******** ********************************* ***************** HS_haplotype1 AAAGAAGGAAGGGCGAAAGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT HS_haplotype2 AAAGAAGGAAGGGCGAATGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT HS_assemblymutate AAAGAAGGAAGGGCGAAAGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT ***************** ****************************************** HS_haplotype1 TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGACCCTAACTGCGCAGGTGATGACA HS_haplotype2 TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGCCCCTAACTGCGCAGGTGATGACA HS_assemblymutate TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGTCCCTAACTCCGCAGGTGATGACA ************************************ ******** ************** HS_haplotype1 GAGTTTATTTCGGTAAATGGATCAAAGAACACATTTATCTCCCATAATATATTAGAAAAG HS_haplotype2 GAGTTTATTTCGGTAAATGGATCAAGGAACACATTTATCTCCCAAAATATATTAGAAAAG HS_assemblymutate GAGTTTATTTCGGTAAATGGATCAAAGAACACATTTATCTCCCATAATATATTAGAAAAG ************************* ****************** *************** HS_haplotype1 AAAGGACAGCGATCCTTAGCCATATAGGATGGCTCATCAGCCCCAGTCTCGACCATGAAG HS_haplotype2 AAAGGACAGCCATCCTTAGCCATATAGGATGGCTCATCAGCCCCAGTCTCGACCATGAAG HS_assemblymutate AAAGGACAGCCATCCTTAGCTATATAGGATGGCTCATCAGCCCCAGTCCCGACCATGAAG ********** ********* *************************** *********** HS_haplotype1 AACACTTTTTTCCTTTGTCCTTGTCTCGCGCCTGGCCGTCACTCCTTATAGGGACAAACC HS_haplotype2 AACACATTTTTCCTTTGTCCTTGTCTCGCGCCTGGCCGTCACTCCTTATAGGGACGACCC HS_assemblymutate AACACTTTTTTCCTTTGTCCTTGGCTCGCGCCTGGCCGTCACTCCTTATAGGGACAGACC ***** ***************** ******************************* ** HS_haplotype1 AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGACTGAGGTTAA HS_haplotype2 AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGGCTGAGGTTAA HS_assemblymutate AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGGCTGAGGTTAA ************************************************* ********** HS_haplotype1 AGAGAATCAATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA HS_haplotype2 AGAGAATCTATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA HS_assemblymutate AGAGAATCTATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA ******** *************************************************** HS_haplotype1 TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGAAAAAAATAATACCCTCTGTTC HS_haplotype2 TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGCAAAAAATAATACCCTCTGTTC HS_assemblymutate TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGCAAAAAATAATACCCTCTGTTC ************************************** ********************* HS_haplotype1 GACCCGGCAGCGATTCCCTAGCCCAAACCAATAAAAACACCCGAGAGAATGGGGCGTGTC HS_haplotype2 GACCCGGCAGCGATTCCTTAGCCCAAACCAATAAAAACACCCGAGAGAATGGGGCGTGTC HS_assemblymutate GTCCCGGCTGCGATTCCCTAGCCCAAACCAATAAAAACACCCGAGGGAATGGGGCGTGTC * ****** ******** *************************** ************** HS_haplotype1 CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA HS_haplotype2 CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA HS_assemblymutate CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA ************************************************************ HS_haplotype1 ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA HS_haplotype2 ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA HS_assemblymutate ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA ************************************************************ HS_haplotype1 AATGTACGTGCCTTTCCATTGAAAGCTCAACATTCTGAAGTTTCAGGGTGACCTTGGCTG HS_haplotype2 AATGTACGTGCCTTTCCATTGAAAGCTCAACACTCTGATGTTTCAGAGTGACCTTGGTTG HS_assemblymutate AATGTACGTGCCTTTCCATTGAAAGCTCAACACTCTGATGTTTCAGAGTGACCTTGGTTG ******************************** ***** ******* ********** ** HS_haplotype1 TCATATTTTCAAAAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCGGGCCTGGTA HS_haplotype2 TCATATTTTCACAAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCCGGCCTGGAA HS_assemblymutate TCATAATTTCAATAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCGGGCCTGGTA ***** ***** ************************************* ******* * HS_haplotype1 TCCACAGTTTGGAAGATTAACATGTTAATGTGATTACAGCTACCAGGCAGATTCAGTTAC HS_haplotype2 TCCACAGTTTGGAAGATTAACATGTTAGTGTGATTACAGCTACCAGGCAGATTCAGTTAC HS_assemblymutate TCCACAGTTTGGAAGATTAACATGTTAGTGTGATTACAGCTACCAGGCAGATTCAGTTAC *************************** ******************************** HS_haplotype1 TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGCACGAGCCATGTAAGTAAACATTATAT HS_haplotype2 TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGTACGAGCCATGTAAGTAAACATTATAT HS_assemblymutate TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGCACGAGCCATGTAAGTAAACATTATAT ********************************* ************************** HS_haplotype1 CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG HS_haplotype2 CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG HS_assemblymutate CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG ************************************************************ HS_haplotype1 GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAGCA HS_haplotype2 GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAACA HS_assemblymutate GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAGCA ********************************************************* ** HS_haplotype1 TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTCTCTAAACAATCC HS_haplotype2 TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTTTCTAAACAATCC HS_assemblymutate TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTTTCTAAACAATCC *********************************************** ************ HS_haplotype1 TAGGAAGTGCAGACCCTCCCAGCAGTGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG HS_haplotype2 TAGAAAGTGCATACCCTCCCAGGAGGGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG HS_assemblymutate TAGGAAGTGCAGACCCACCCAGCAGTGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG *** ******* **** ***** ** ********************************** HS_haplotype1 ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC HS_haplotype2 ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC HS_assemblymutate ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC ************************************************************ HS_haplotype1 TGGAGAAGAAGTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT HS_haplotype2 TGGAGAAGAACTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT HS_assemblymutate TGGAGAAGAAGTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT ********** ************************************************* HS_haplotype1 GTGTGCCTAGGCGCGGTCATGGCTCACCACACTGGGACTCGACCGCCCGGGAGAATTAAG HS_haplotype2 GTGTGCCTAGGCGCGGGCATGGCTCACCACACTGGGACTCGACCGCCCGGGAAAATTAAG HS_assemblymutate GTGTGCCTAGGCGCGGGCATGGCTCACCACACTGGGACTCGACCGCCCGGGAAAATTAAG **************** *********************************** ******* HS_haplotype1 AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTTTTGGACGGAA HS_haplotype2 AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTTTTGGACGGAA HS_assemblymutate AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTGTTGGACGGGA ************************************************* ******** * HS_haplotype1 GGCCCTGAGGGATTATTTAATTGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC HS_haplotype2 GGCCCTGAGGGATTATTTAATAGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC HS_assemblymutate GGCCCTGAGGGATTATTTAATAGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC ********************* ************************************** HS_haplotype1 AGATGTTTGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGTATGGATGCCCCTTCTCAG HS_haplotype2 AGATGTATGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGAATGGATGCCCCTTCTCAG HS_assemblymutate AGATGTTTGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGTATGGATGCCCCTTCTCAG ****** ********************************** ****************** HS_haplotype1 TGAGCTCCAACTGCTTTCCAAATGCCTCAGGATGGGATTTCAACAAGAATTAGATTTTTT HS_haplotype2 TGATCTCCAACTGCTTTCCAAATGCCTCAGGATGGGATTTAAACAAGAATTAGATTTTTT HS_assemblymutate TGAGCTCCAACTGCTTTCCAAATGCCTCAGGATTGGCTTTAAACAAGAATTAGATTTTTT *** ***************************** ** *** ******************* HS_haplotype1 TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG HS_haplotype2 TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG HS_assemblymutate TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG ************************************************************ HS_haplotype1 GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGGTAACAGAAA HS_haplotype2 GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGTTAACAGAAA HS_assemblymutate GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGTTAACAGAAA ************************************************** ********* HS_haplotype1 TCTTGTTTTCCATGAGATATAAGTGACTTGTGTTTGTTGTTAATCATGACCTAGGCTGAG HS_haplotype2 TGTTGTTTTCCATGAGATATAAGTGACTTGTGTTTGTTGTTAATCATGACCTAGGCTCAG HS_assemblymutate TCTTGTTTTCCGTGAGATATAAGTGACTTGTGTTTGTTGTTGATCATGACCTAGGCTGAG * ********* ***************************** *************** ** HS_haplotype1 CTAGCCATGCAGACTCCAGGAGTTCTCATTATAGATTCTCAAAAGTAGTGTATTTCCTGC HS_haplotype2 CTAGCCATGCAGACTCCAGGAGTTCTCATTATAGATTCTCAAAAGTAGTGTATTTCCTGC HS_assemblymutate CTAGCCATGCAGACTCCGGGAGATCTCATTATAGATTCGCAAAAGTAGTGTATTTCCTGC ***************** **** *************** ********************* HS_haplotype1 TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATTAGGT HS_haplotype2 TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATCAGGT HS_assemblymutate TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATTAGGT ******************************************************* **** HS_haplotype1 GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTCGAGGGTTTTACCGAAATGACGTGA HS_haplotype2 GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTCGAGGGTTTTACCGAAATGACGTCA HS_assemblymutate GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTGGAGGGTTTTACCGAAATGACGTCA *********************************** ********************** * HS_haplotype1 CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG HS_haplotype2 CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG HS_assemblymutate CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG ************************************************************ HS_haplotype1 AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA HS_haplotype2 AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA HS_assemblymutate AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA ************************************************************ HS_haplotype1 TCTTCGGGAGGAGAGACATGGTCTGGGAAGTTGTCCGGCCGTCTTAGGTTCAAGCTCACT HS_haplotype2 TCTTCGGGAGGAGAGACATGGTCTGGGAAGGTGTCCGGCCGTCTTAGGTTCAAGCTCACT HS_assemblymutate TCTTCGGGAGGAGAGACATGGTCTGGGAAGTTGTCCGGCCGTCTTAGGTTCAAGCTCACT ****************************** ***************************** HS_haplotype1 ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAGGTCTCACT HS_haplotype2 ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAAGTCTCACT HS_assemblymutate ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAAGTCTCACT *************************************************** ******** HS_haplotype1 TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG HS_haplotype2 TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG HS_assemblymutate TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG ************************************************************ HS_haplotype1 CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA HS_haplotype2 CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA HS_assemblymutate CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA ************************************************************ HS_haplotype1 GGCCGCGGGCCCTGTTAAAGGTTTTTGTTGATGAGCTGTCTGTAATGTAATAGTAGTTTT HS_haplotype2 GGCCGCGGGCCCTGTTAAAAGTTTTTGTTGATGAGCTGTCTGTAGTGTAATAGTAGTTTT HS_assemblymutate GGCCGCGGGCCCTGTTAAAGGTTTTTGTTGATGAGCTGTCTGTAATGTAATAGTAGTTTT ******************* ************************ *************** HS_haplotype1 TACCCAGCCTGCCCTTAGCTCCTGCCCGGGTATGGTACGCTGCTCTCCTATCCACGCCTG HS_haplotype2 TACCCAGCCTGCCCTTAGCTCCTGCCCGGTTATGGTAGGCTGCTCTCCTATCCACGCCTG HS_assemblymutate TACCCAGCCTGCCCTTAGCTCCTGCCCGGTTATGGTAGGCTCCTCTCTTATCCACGCCTG ***************************** ******* *** ***** ************ HS_haplotype1 GTCTTATAAAATGCATAGAGGATCAGAAAAATTTATTTTTGGATAGGAAGTGCTGCTGCA HS_haplotype2 GTCTTATAAAATGCATAGAGGATCAGAAAAATTTATTTTTGGATAGGAAGTGCTGCTGCG HS_assemblymutate GTCATATAAAATGCATAAAGGATCAGAAAAATTTAATTTTGGATAGGAAGTGCTGCTGCA *** ************* ***************** *********************** HS_haplotype1 TTCCGGTGGCAGGCTGATCCCTTTTCCTTATCAGGATGAGTTCCAAGACGAGATGGATAG HS_haplotype2 TTCCGGTGGCAGGCTGACCCCTTTTCCTTATCAGGATGAGTTCCAAGACGAGATGGATAG HS_assemblymutate TTCCGGTGGCAGACTGACCCCTTTTCCTTACCAGGATGAGTTCCAAGACGAGATGGATAG ************ **** ************ ***************************** HS_haplotype1 CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA HS_haplotype2 CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA HS_assemblymutate CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA ************************************************************ HS_haplotype1 GAAACTGAGGCCCACCTAAAATACCCAGAGGGCCGAGTGATTTGACATGCCACGAATAAC HS_haplotype2 GAAACTGAGGCCCACCTAAAATACCCAGAGGGCCGAGTGATTTGACATACCACGAATAAC HS_assemblymutate GAAACTGAGGCCCACCTAAAACACCCAGTGGGCCGAGTGATTTGACATACCACGAATAAC ********************* ****** ******************* *********** HS_haplotype1 TCTGTCTCTAGGAACTGTAATCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG HS_haplotype2 TCTGTCTCTAGGAACTGTACTCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG HS_assemblymutate TCTGTTTCTAGGAACTGTAATCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG ***** ************* **************************************** HS_haplotype1 CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGGGAACCA HS_haplotype2 CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGCGAACCA HS_assemblymutate CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGCGAACCA ***************************************************** ****** HS_haplotype1 GCTGGAGCGTTTGAGGAGATAACAAGAGAAATTGAATAAACCCTCTTCACAGAAAAAAGC HS_haplotype2 GCTGGAGTGTTTGAGGAGATAACAAGAGAAATTGAAAAAACCCTCTTCACAGGAAAAAGC HS_assemblymutate GCCGGAGCGTTTGAGGAGATAACAAAAGAAATTGAATAAACCCTCTTCACAGAAAAAAGC ** **** ***************** ********** *************** ******* HS_haplotype1 AATACAAATCAATTACGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT HS_haplotype2 AATACAAATCAATTAAGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT HS_assemblymutate AATACAAATCAATTAAGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT *************** ******************************************** HS_haplotype1 TCAGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAAAA HS_haplotype2 TCCGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAATA HS_assemblymutate TCAGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAAAA ** ******************************************************* * HS_haplotype1 ATTCAAGTTTTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT HS_haplotype2 ATTCAAGTATTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT HS_assemblymutate ATTCAAGTTTTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT ******** *************************************************** HS_haplotype1 ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAATCCAGACATCACTTCTC HS_haplotype2 ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAACCCAGACATCACTTCTC HS_assemblymutate ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAATCCAGACATCACTTCTC ******************************************* **************** HS_haplotype1 TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT HS_haplotype2 TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT HS_assemblymutate TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT ************************************************************ HS_haplotype1 GGTCCTAGAACATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATATTATTCC HS_haplotype2 GGTCCTAGAAGATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATAATATTCC HS_assemblymutate GGCCCTAGAAAATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATATTATTCC ** ******* ****************************************** ****** HS_haplotype1 TCAGATTCTGCCCTACAACCTCCCATGACAATTCCCCAGTAGAGAACCCACCTGCCCACC HS_haplotype2 TCAGATTCTGGCCTACAACCTCCCATGATCATTCCCCAGTAGAGAACCCACCTGCCCATC HS_assemblymutate TCAGATTCTGCCCTACAACCTCCCATGATCATTCCCCAGTAGAGAACCCACCTGCCCATC ********** ***************** **************************** * HS_haplotype1 ATTCTTTGCAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC HS_haplotype2 ATTCTTTGTAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC HS_assemblymutate ATTCTTTGTAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC ******** *************************************************** HS_haplotype1 CACGTTGCATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACAATCCTTGAGA HS_haplotype2 CACGTTACATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACATTCCTTGAGA HS_assemblymutate CACGTTACATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACATTCCTTGAGA ****** ******************************************* ********* HS_haplotype1 TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGGCTCACTGAATCTGAGGCGT HS_haplotype2 TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGTCTCACTGAATCTGGGGCGT HS_assemblymutate TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGGCTCACTGAATCTGAGGCGT **************************************** ************* ***** HS_haplotype1 GGCTATTGTCAGTCTCAGCTCAGGCGCAAGCCTGGAAATTATAAACGTTACCATGTATTG HS_haplotype2 GGCTATTGTCAGTCTCAGCTCGGGCGCAAGCCTGGATATTATAAACGTTACCATGTATTG HS_assemblymutate GGCTATTGTCAGTCTCAGCTCGGGCGCAAGCCTGCATATTAAAAACGTTACCATGTATTG ********************* ************ * **** ****************** HS_haplotype1 GATCCTGGGAGGTCAGAAACATCACCCCCATTGGCCTCACTTACGAAACTGCTGTGCACG HS_haplotype2 GATCCTGGGAGGTCAGAAACATCACCCCCATTGGCCTTACTTACGAAACTGCTGTGCACG HS_assemblymutate GATCCTAGGAGGTCAGAAACATCACCCCCATTGGGCTCACTTACGAAACTGCTGTGCACG ****** *************************** ** ********************** HS_haplotype1 TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT HS_haplotype2 TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT HS_assemblymutate TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT ************************************************************ HS_haplotype1 GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA HS_haplotype2 GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA HS_assemblymutate GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA ************************************************************ HS_haplotype1 TTAGCAGCCTGGAGAGAAGACAATTAAGTTTAAATATTCCTATTTCTTACAGTCTTTGTT HS_haplotype2 TTAGCAGTCTGGAGAGAAGACAATTAAGTTAAAATATTCCTATTACTTACAGTCTTTGTT HS_assemblymutate TTAGCAGTCTGGAGAGAAGACAATTAAGTTAAAATATTCCTATTACTTACAGTCTTTGTT ******* ********************** ************* *************** HS_haplotype1 AAGCTGGGCTTCATTTCTCCATGAGTGCCTCACTGTTGGGACTAAAATTAGCTTCCAGGC HS_haplotype2 AAGCTGGGCTTCATTTCTCCATGAGTGCCTCACTGTTGGGACTAAAATTAGCTTCCAGGC HS_assemblymutate AAGCTGGGCTTCATTTCACCATGAGTGCCACACTGTTGGGACTAAAATTAGCTTCCAGGC ***************** *********** ****************************** HS_haplotype1 GTGAGAAGAGATCATCTGGGCAGACCGCAGCCCTTGACTTGCGCTGCTTTTATAATGGCG HS_haplotype2 GTGAGAAGAGATCATCCGGGCAGACCGCAGCCCTTGACTTGGGCTGCTTTTATAATGGCA HS_assemblymutate GTGAGAAGAGATCATCCGGGCAGACCGCAGCCCTTGACTTGGGCTGCTTTTATAATGGCA **************** ************************ ***************** HS_haplotype1 TTATTTAGTTTCCTTCTTTTAATTTATTTGCTGGGTGGCCGAGTAAGTTCACTGTCAAAA HS_haplotype2 TTATTTAGTTTCCTTCTTTTAATTTATTTGCTGGGTGGCCGAGTAAGTTCACTGTCAAAA HS_assemblymutate TTATTTAGTTTCCTTCTTTTAATTTATTTGTTGGGTGGAAGAGTAAGTTCACTGTCAAAA ****************************** ******* ******************** HS_haplotype1 AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGATTATGCTCAAAC HS_haplotype2 AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGAATATGCTCAAAC HS_assemblymutate AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGAATATGCTCAAAC ************************************************ *********** HS_haplotype1 TGAGTAATTGTAATATAAAATTTTATACTTTTCATGTGCTGTGCACCTTGGCTCTGGTTT HS_haplotype2 TGAGTATTTGTAATATAAAATTTTATACTTTTCATGTGCTGTGCACCCGGGCTCTGGTTT HS_assemblymutate TGAGTAATTTTAATATAAAATTTTATACTTTTCATGTCCTGTGCACCTTGGCTCTGGTTT ****** ** *************************** ********* *********** HS_haplotype1 CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCTCTTTATCTGATGT HS_haplotype2 CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCTCTTTATCTGATGT HS_assemblymutate CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCCCTTTATCTGAATT ********************************************** ********** * HS_haplotype1 GTGGCAATCCTACCAACACACTACGGATGGTCAGGTGGTGTGTTGCACAGAGATGCCCTT HS_haplotype2 GTGGCAATCCTACCAACACACTGCGGATGGTCAGGTGGTGTGTTGCACAGAGATGCCCTT HS_assemblymutate GTGGCAATCCTACCAACACACTACGGATGGTCAGTTGGTGTGTTGCACAGAGATGCCCTT ********************** *********** ************************* HS_haplotype1 TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC HS_haplotype2 TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC HS_assemblymutate TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC ************************************************************ HS_haplotype1 AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC HS_haplotype2 AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC HS_assemblymutate AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC ************************************************************ HS_haplotype1 TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCAAACCAGTCATAAAAG HS_haplotype2 TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCACACCAGTCATAAAAG HS_assemblymutate TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCACACCAGTCATAAAAG ********************************************* ************** HS_haplotype1 AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC HS_haplotype2 AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC HS_assemblymutate AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC ************************************************************ HS_haplotype1 TAACAAAAATTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC HS_haplotype2 TAACAAAAACTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC HS_assemblymutate TAACAAAAACTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC ********* ************************************************** HS_haplotype1 ACTCAGGGTTTCCCTCAGCTTGTCAAATTGGACAAATTGTCCATAAATTCATAAATGAAA HS_haplotype2 ACTCAGGGTTCCCCTCAGCTTGTCAAATTGTACAAATTGTCCATAAATTCATAAATGAAA HS_assemblymutate ACTCAGGGTTTCCCTCAGCTTGTCAAATTGGACAAATTGTCCATAAATTCATAAATGAAA ********** ******************* ***************************** HS_haplotype1 ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG HS_haplotype2 ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG HS_assemblymutate ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG ************************************************************ HS_haplotype1 TGAAGTCAATTGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA HS_haplotype2 TGAAGTCAATAGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA HS_assemblymutate TGAAGTCAATTGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA ********** ************************************************* HS_haplotype1 GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT HS_haplotype2 GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT HS_assemblymutate GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT ************************************************************ HS_haplotype1 AGCCACACTTTCTATCTATTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA HS_haplotype2 AGCCACACTTTCTATCTTTTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA HS_assemblymutate AGCCACACTTTCTATCTATTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA ***************** ****************************************** HS_haplotype1 GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT HS_haplotype2 GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT HS_assemblymutate GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT ************************************************************ HS_haplotype1 TTATTTCCAACTTAACCTATATACCTGAGGAATTCCACTATTCCACTGTAATCAGCCTGT HS_haplotype2 TTATTTCCAACTTAACCTATATACCTGAGAAATTCCACTATTCCACTGTAATCAGCCTGT HS_assemblymutate TTATTTCCAACTTAACCTATATACCTGAGGAATTCCACTATTCCACTGTAATCAGCCTGT ***************************** ****************************** HS_haplotype1 AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA HS_haplotype2 AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA HS_assemblymutate AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA ************************************************************ HS_haplotype1 AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG HS_haplotype2 AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG HS_assemblymutate AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG ************************************************************ HS_haplotype1 TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTACCTGATACC HS_haplotype2 TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTCCCTGATACC HS_assemblymutate TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTCCCTGATACC ************************************************** ********* HS_haplotype1 CCGGGGACCATGCAATTCCCCGACCCAGAAACCGTTCCTTAATAGCTTGGGTTTTATGTA HS_haplotype2 CCGGGGACCATGCAATTCCCCGACCCAGAAACCCTTCCCTAATAGCTTGGGTTTTATGTA HS_assemblymutate CCGGGGACCATGCAATTCCCCGACCCAGAAACCGTTCCTTAATAGCTTGGGTTTTATGTA ********************************* **** ********************* HS_haplotype1 AAGGGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGT HS_haplotype2 AAGAGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGC HS_assemblymutate AAGAGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGC *** ******************************************************* HS_haplotype1 TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTGAGCCAAAAACTAG HS_haplotype2 TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTCAGCCAAAAACTAG HS_assemblymutate TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTGAGCCAAAAACTAG ********************************************** ************* HS_haplotype1 CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG HS_haplotype2 CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG HS_assemblymutate CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG ************************************************************ HS_haplotype1 AGGTACCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC HS_haplotype2 AGGTTCCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC HS_assemblymutate AGGTACCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC **** ******************************************************* HS_haplotype1 AGCCGGCTCCACAACAACAGCCTTTTCGCACATAGGAGGCTTCAAATACGACATATATAC HS_haplotype2 AGCCGGCACCACAACAACAGCCTTTTCGCACATAGGAGGCTTCATATACGACATATATAC HS_assemblymutate AGCCGGCACCACAACAACAGCCTTTTCGCCCATAGTAGGCTTCATATACGACATATATAC ******* ********************* ***** ******** *************** HS_haplotype1 GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT HS_haplotype2 GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT HS_assemblymutate GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT ************************************************************ HS_haplotype1 AAAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTCCCAGATCACGCCGCCTCAAATC HS_haplotype2 AAAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTGCCAGATCACGCCGCCTCAAATC HS_assemblymutate GGAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTGCCAGATCACGCCGCCTCAAATC *********************************** ********************** HS_haplotype1 ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGACTCACAGCAGGG HS_haplotype2 ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGGCTCACAGCAGGG HS_assemblymutate ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGACTCACAGCAGGG *********************************************** ************ HS_haplotype1 AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCTGAGTAAA HS_haplotype2 AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCTGAGTAAA HS_assemblymutate AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCGGACTAAA **************************************************** ** **** HS_haplotype1 GAGAAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTCTGTGTGC HS_haplotype2 GAGAAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTGTGTGTGC HS_assemblymutate GAGCAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTCTGTGTGC *** ************************************************ ******* HS_haplotype1 AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC HS_haplotype2 AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC HS_assemblymutate AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC ************************************************************ HS_haplotype1 TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGAAGTGCAT HS_haplotype2 TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGCAGTGCAT HS_assemblymutate TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGAAGTGCTT **************************************************** ***** * HS_haplotype1 GATTTTCACCCAGCACCCAGTGGGTCAGTAGCTCCTGACCACTGTTGAAGCCATTCCAAG HS_haplotype2 GAATTTCACCCAGCACCCAGTGGGTCAGTAGCTCCTGACCACTGTTGAAGCCATTCCAAG HS_assemblymutate GAATTTCACCCAGCACCCAGTGGGTCAGTAGCGCCTGACCACTGTTGAAGCCATTCCAAG ** ***************************** *************************** HS_haplotype1 ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG HS_haplotype2 ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG HS_assemblymutate ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG ************************************************************ HS_haplotype1 CTAAGTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA HS_haplotype2 CTAATTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA HS_assemblymutate CTAATTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA **** ******************************************************* HS_haplotype1 AGGTTTTTCCTCCTCTGTTCAGCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT HS_haplotype2 AGGTTTTTCCTCCTCTGTTGACCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT HS_assemblymutate AGGTTTTTCCTCCTCTGTTCAGCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT ******************* * ************************************** HS_haplotype1 GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTGGTG HS_haplotype2 GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTAGTG HS_assemblymutate GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTAGTG ******************************************************** *** HS_haplotype1 TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA HS_haplotype2 TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA HS_assemblymutate TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA ************************************************************ HS_haplotype1 AATACTCCATCCTGCCTGTGCCTGACTCCCTCTGACTTGCCTCCGGCTACTCCCTACAGA HS_haplotype2 AATACTCCATCCTGCCTGTGCCTGACTCCCTCAGACTTGCCTCCGGCTACTCCCTACAGA HS_assemblymutate AATACTCCATCCTGCCTGTGCCTGACTCCCTCAGACTTGCCTCCGGCTACTCCCGACAGA ******************************** ********************* ***** HS_haplotype1 CCCCCGCCACCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAAGGGAATCAG HS_haplotype2 CCCCCGCCACCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAGGGGAATCAG HS_assemblymutate TCCCCGCCATCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAAGGGAGTTAG ******** **************************************** **** * ** HS_haplotype1 TCTCCTGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCAGCAGCAATGTAACATGTTAA HS_haplotype2 TCTCCTGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCATCAGCAATGTAACATGTTAA HS_assemblymutate TCTCATGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCATCAGCAATGTAACATGTTAA **** *********************************** ******************* HS_haplotype1 TACAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAAGACAAAAAGCAAGCAAAT HS_haplotype2 TTCAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAATACAAAAAGCAAGCAAAT HS_assemblymutate TACAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAAGACAAAAAGCAAGCAAAT * **************************************** ***************** HS_haplotype1 AAGCTGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT HS_haplotype2 AAGCCGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT HS_assemblymutate AAGCTGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT **** ******************************************************* HS_haplotype1 CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT HS_haplotype2 CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT HS_assemblymutate CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT ************************************************************ HS_haplotype1 GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATCATGTCT HS_haplotype2 GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATAATGTCA HS_assemblymutate GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATAATGTCA ***************************************************** ***** HS_haplotype1 CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT HS_haplotype2 CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT HS_assemblymutate CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT ************************************************************ HS_haplotype1 AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC HS_haplotype2 AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC HS_assemblymutate AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC ************************************************************ HS_haplotype1 TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAATGAAAGGCTGGGGTACTAAGCCAC HS_haplotype2 TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAATGAAAGGCTGGGGTACTAAGCCAC HS_assemblymutate TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAAAAAAAGGCTGGGGTACTAAGCCAC ************************************ ********************** HS_haplotype1 CCAGCTACTGCGGTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG HS_haplotype2 CCAGCTACTCCGCTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG HS_assemblymutate CCAGCTACTCCGCTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG ********* ** *********************************************** HS_haplotype1 GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA HS_haplotype2 GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA HS_assemblymutate GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA ************************************************************ HS_haplotype1 CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG HS_haplotype2 CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG HS_assemblymutate CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG ************************************************************ HS_haplotype1 GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGATTGTAAAGACACTGAGCA HS_haplotype2 GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGCTTGTAAAGAAACTGAGCA HS_assemblymutate GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGATTGTAAAGACACTGAGCA ***************************************** ********* ******** HS_haplotype1 ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG HS_haplotype2 ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG HS_assemblymutate ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG ************************************************************ HS_haplotype1 CTAGGAGCGCCGGGTTGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGACCCATCC HS_haplotype2 CTAGGAGCGCCGGGTGGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGAGCCATCC HS_assemblymutate CTAGGAGCGCCGGGTTGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGACCCATCC *************** ************************************* ****** HS_haplotype1 CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCAAAAAACCC HS_haplotype2 CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCGAAAAACCC HS_assemblymutate CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCGAAAAACCC *************************************************** ******** HS_haplotype1 AAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTACGCCAGCTCACGGGTGG HS_haplotype2 GAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTGCGCCAGCTCACGGGTGG HS_assemblymutate GAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTACGCCAGCTCACGGGTGG ***************************************** ***************** HS_haplotype1 TCTTAGTATGTTGTCATTTAAAACTTGAATTAAAGAAGGGCTGCGACAGACGGAGTGTCT HS_haplotype2 TCTTAGTATGTTCTCATTTAAAACTTGAATTAAAGAAGGGCTGGGACAGATGGAGTGTCT HS_assemblymutate TCTTAGTATGTTCTCATTAAAAACTTGAATTAAAGAAGGGCTGGGACAGATGGAGTGTCT ************ ***** ************************ ****** ********* HS_haplotype1 AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT HS_haplotype2 AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT HS_assemblymutate AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT ************************************************************ HS_haplotype1 CTGTTTCTTGAGAGAAATCCAGTATGTGTATATTCTTTCCAGGGAATCCTTTTTGTACAA HS_haplotype2 CTGTTTCTTGAGAGAAATCCAGTATGTGTATAATCTTTCCAGGGAATCCTTTTTGTACAA HS_assemblymutate CTGTTTCTTGAGAGAAATCCAGTATGTGTATAATCTTTCCAGGGAATCCTTTTTGTACAA ******************************** *************************** HS_haplotype1 AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC HS_haplotype2 AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC HS_assemblymutate AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC ************************************************************ HS_haplotype1 ACTTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA HS_haplotype2 ACCTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA HS_assemblymutate ACCTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA ** ********************************************************* HS_haplotype1 TTCAAGATTTCAGGTCAGTCGCCCATCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG HS_haplotype2 TTCTAGATTCCAGGTCAGTCGCCCATCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG HS_assemblymutate TTCAAGATTTCAGATCAGTCGCCCAGCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG *** ***** *** *********** ********************************** HS_haplotype1 GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTCGACCCGCCCTCAGTTTGAGTTGTTT HS_haplotype2 GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTAGACCCGCCCTCAGTTTGAGTTGTGT HS_assemblymutate GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTAGACCCGCCCTCAGTTTGAGTTGTGT ********************************** *********************** * HS_haplotype1 GTTTATCTATTAAAAACCGATGATGGGCTTAGCCAGAGCTCATTCATTTCTTTAAAGAAA HS_haplotype2 GTTTATCTATTAAAAACCGATGATGGGCTTGGACAGAGCTCATTCATTTCTTTAAAGAAA HS_assemblymutate GTTTATCTATTAAAAACCGATGATGGGCTTAGCCAGAGCTCATTCATTTCTTTAAAGAAA ****************************** * *************************** HS_haplotype1 AAATCTCTTCAGGAGAAGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG HS_haplotype2 AAATCTCTTCAGGAGATGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG HS_assemblymutate AAATCTCTTCAGGAGATGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG **************** ******************************************* HS_haplotype1 GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGACCTCTTTTGTTTTGT HS_haplotype2 GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGATCTCTTTTGTTTTGT HS_assemblymutate GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGACCTCTTTTGTTTTGT ********************************************* ************** HS_haplotype1 AATCTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT HS_haplotype2 AATCTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT HS_assemblymutate AATTTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT *** ******************************************************** HS_haplotype1 TAACACTACAATATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA HS_haplotype2 TAACACTACATTATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA HS_assemblymutate TAACACTACAATATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA ********** ************************************************* HS_haplotype1 TCATCTCAAAATGTGTGCTTGAAAGGTGCGAGTGATTACTCTGGTGCCTTGTTCCGAAGG HS_haplotype2 TCATCTCAAAATGTGTGCTTGAAAGGTGTGAGTGATTACTCTGGTGCCTTGTTCCGAAGG HS_assemblymutate TCGTCTCAAAGTGTGTGCTTGAAAGATGTGTGTGATTACTCTGGTGCCTTGTTCCGAAGG ** ******* ************** ** * ***************************** HS_haplotype1 GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA HS_haplotype2 GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA HS_assemblymutate GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA ************************************************************ HS_haplotype1 CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG HS_haplotype2 CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG HS_assemblymutate CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG ************************************************************ HS_haplotype1 ACATGGTGGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCACGCCTA HS_haplotype2 ACATGGTAGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCATGCCTA HS_assemblymutate ACATGGTGGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCACGCCTA ******* ********************************************** ***** HS_haplotype1 CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGGAGCAACCCCTTGAGACGGGAA HS_haplotype2 CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGGAGCAACCCCTTGAGACGGGAA HS_assemblymutate CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGAAGCAACCCCTTAAGACGGGAA ************************************** *********** ********* HS_haplotype1 CAAATGTACAGGTCAATCTGTATTATTCGAGGAAGCTTGGGCAAGGGCCTCTGGTCTGAG HS_haplotype2 CAAATGTACAGGTCAATCTGCATTATTCGAGGAAGCTGGGGCAAGGGCCTCTGGTCTGAG HS_assemblymutate CAAATGTACAGGTCAATCTGTATTATTCGAGGAAGCTTGGGCAAGGGCCTCTGGTCTGAG ******************** **************** ********************** HS_haplotype1 GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC HS_haplotype2 GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC HS_assemblymutate GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC ************************************************************ HS_haplotype1 GCTCTGAAATTATTTGTTCAGTGAAAAGAAACAAAAGAACTCCACCAACCTGATTGAGTG HS_haplotype2 GCTCTGAAATTATTTTTTCAGTGAAAAGAGACAAAAGAACTCCACCAACCTGATTGAGTG HS_assemblymutate GCTCTGAAATTATTTGTTCAGTGAAAAGAAACAAAAGAACTCCACCAACCTGATTGAGTG *************** ************* ****************************** HS_haplotype1 GAGAATCACTGTGGAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG HS_haplotype2 GAGAATCACTGTGCAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG HS_assemblymutate GAGAATCACTGTGCAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG ************* ********************************************** HS_haplotype1 AATGGCTATTTTTTAATATCGCATGGAACTTCCCAGGCGGATTAGGCAGCTTGATTAACT HS_haplotype2 AATGGCTATTTTTTAATATCACATGGAACTTCCCAGGCGGATTAGCCAGCTTGATTAACT HS_assemblymutate AATGGCTATTTTTTAATATCGCATGGAACTTCCCAGGCGGATTAGGCAGCTTGATTAACT ******************** ************************ ************** HS_haplotype1 GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCTGGGCAGAGAACCCAGTCTG HS_haplotype2 GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCTGGGCAGAGAACCCAGTCTG HS_assemblymutate GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCGGGGCAGAGTACCCAGTCTG **************************************** ******** ********** HS_haplotype1 TGTGACAGCTTGAAGAAACTGACCTTAGTTAACTCCGCGGGTGGTGGCAACATTGCATTG HS_haplotype2 TGTGACAGCTTGAAGAAACTGACCTTAGTTAACTCCGCGGGTGGTGGCAACATTGCATTG HS_assemblymutate TGTGACAGCTTGAAGAGACTGACCTTAGTTAAGTCCGCGGGTGGTGGCAACATTGCATTG **************** *************** *************************** HS_haplotype1 CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA HS_haplotype2 CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA HS_assemblymutate CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA ************************************************************ HS_haplotype1 TTTGGCACCACAAGTATTTTTGGGGGGATACCCCACATGTTATTAGTGAAACAGGCGGGT HS_haplotype2 TTTGGCACCACAAGTATTTTTGGGGGGAAACCCCACATGTTATTAGTGAAACAGGTGGGT HS_assemblymutate TTTGGCACCACAAGTATTTTTGGGGGGATACCCCACATGTTATTAGTGAAACAGGCGGGT **************************** ************************** **** HS_haplotype1 TTCATAAGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCGGGAGGTTCAAAA HS_haplotype2 TTCATACGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCAGGAGGTTCAAAA HS_assemblymutate TTCATAAGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCAGGAGGTTCAAAA ****** **************************************** ************ HS_haplotype1 ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCAAATGCCTGGGA HS_haplotype2 ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCGAATGCCTGGGA HS_assemblymutate ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCAAATGCCTGGGA ************************************************ *********** HS_haplotype1 TTACTTAACTTGTACTCAATGGTTATGGAGGCTGTGTGAGTAGCGCCCAAAACTCGACAG HS_haplotype2 TTACTTAACTTGTCCTCAATGGTTATGGAGGCTGTGTGAGTAGCGGGCAAAACTCGACAG HS_assemblymutate TTACTTAACTTGTCCTCAATGGTTATGGAGGCTGTGTGAGTAGCGGGCAAAACTCGACAG ************* ******************************* ************* HS_haplotype1 AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC HS_haplotype2 AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC HS_assemblymutate AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC ************************************************************ HS_haplotype1 TGGGAATTGCAGGAGATTTATATTGTGATCTGCCTGAATCCCCAAGAGCACAGATATGAC HS_haplotype2 TGGGAATTGCAGGAGATTTATATTGTGATCTGCCTGAATCCCCAAGAGCACAGATATGAC HS_assemblymutate TGGGAATTGCAGGAGATTTATATTGTGCTCTGACTGAATCCCCAAGAGCACAAATATGAC *************************** **** ******************* ******* HS_haplotype1 CCTTAAGACTCCATCGCTTCTATTCGCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT HS_haplotype2 CCTTAAGACTCCATCGCTTCTATTCCCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT HS_assemblymutate CCTGAAGACTCCATCGCTTCTATTCGCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT *** ********************* ********************************** HS_haplotype1 GGCTAACCCCTGTATGCCAGTTTTTTTGTGAGCCCCGAACTGTGTACCCAGTTCTCCCGC HS_haplotype2 GGCTAACCCCTGTATGCCAGTTTTTTTGTGAACCCCGAACTGTGTACGCAGTTCTCCCGC HS_assemblymutate GGCTAACCCCTGTATGCCAGTTTTTTTGTGAACCCCGAACTGTGTACGCAGTTCTCCCGC ******************************* *************** ************ HS_haplotype1 CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAGGCTGGGATGGTT HS_haplotype2 CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAAGCTGGGATGGTT HS_assemblymutate CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAGGCTGGGATGGTT *********************************************** ************ HS_haplotype1 CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC HS_haplotype2 CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC HS_assemblymutate CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC ************************************************************ HS_haplotype1 ATTCAGCCTTGTGAATAAATGGCACGCCTCGCCACTCCATAATTTTTTCATCCCTATTTA HS_haplotype2 AATCGGCCTTGTGAATAAATGGCACGCCTCGGCACTCCATAATATTTTCATCCCTATTTA HS_assemblymutate ATTCAGCCTTGTGAATAAATGGCACGCCTCGCCACTCCATAATTTTTTCATCCCTATTTA * ** ************************** *********** **************** HS_haplotype1 AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGAGTGGAGGGACCACAGGCG HS_haplotype2 AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGAGTGGAGGGACCACAGGCG HS_assemblymutate AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGATTGGAGGGACCATAGGCG ****************************************** *********** ***** HS_haplotype1 TGAGGGAGGATAGACCAGTAGAGTGAAGGCAGGGTGCAGCTAGCAGCCTCGATATTTATG HS_haplotype2 TGAGGGAGGATAGACCAGTAGAGTGAAGGCAGGCTGCAGCTAGCAGCCTCGATATTTATG HS_assemblymutate TGAGGGAGGATAGACCAGTAGAATGAAGGCAGGGTGCAGCCAGCAGCCTCTATATTTATG ********************** ********** ****** ********* ********* HS_haplotype1 AATCAGTTGGGTAGAACCCAAATGTTGAAGGTGGTGGTTTGGTGCGTGGGGGGGGACAGA HS_haplotype2 AATCAGTTGGGTAGAACCCAAATGTTGAAAGTGGTGGTTTGGTGCGTGGGAGGGGACAGA HS_assemblymutate AATCAGTTGGGTAGAACCCAAATGTTGACAGTGGTGGTTTGGTGCGTGGGAAGGGACAGA **************************** ******************** ******** HS_haplotype1 ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAACAGTATCAGAGTCCCAG HS_haplotype2 ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAAAAGTAGCAGAGTCCCAG HS_assemblymutate ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAACAGTATCAGAGTCCCAG ******************************************* **** *********** HS_haplotype1 GCCAGCTGGCCACCATTCGCCCCTTAGGAGGCAGAGGCAGTGAAGTCACATGATTCTGTC HS_haplotype2 GCCAGCTGGCCACCATCCGCCCCTTAGGAGGCAGAGGCAGCGAAGTCACATGGTTCTGTC HS_assemblymutate GCCAGCTGGCCACCATCCGCCCCTTAGGAGGCAGAGGCAGCGAAGTCACATGGTTCTGTC **************** *********************** *********** ******* HS_haplotype1 TTATTTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT HS_haplotype2 TTAATTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT HS_assemblymutate TTAATTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT *** ******************************************************** HS_haplotype1 TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGATGCCCCGCCCAGCTC HS_haplotype2 TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGACGCCCCGCCCAGCTC HS_assemblymutate TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGACGCCTCGCCGAGCTC ********************************************* *** **** ***** HS_haplotype1 TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA HS_haplotype2 TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA HS_assemblymutate TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA ************************************************************ HS_haplotype1 CTAAATTCTTCCCCTCATTGATCAGACAATATTAACACAATGCTGGTTCATTCAAATGGC HS_haplotype2 CTAAATTCTTCCCCTCATTGATCACACAATATTAACACAATACTGGTTCATTCAAATGGC HS_assemblymutate CTAAATTCTTCCCCTCATTGATCACACAATATTAACACAGTACTGGTTCACTCAAATGGC ************************ ************** * ******** ********* HS_haplotype1 AGGAGGGAAGGACAAAGTATGTTCCCTGGCATGCAAAATACAAAATCAAGCAACATAGTA HS_haplotype2 AGGAGGGAAGGACAAAGTATGTTCCCTGGCATGCAAAATACAAAATCAAGCAATATAGTA HS_assemblymutate AGGAGGGAAGGAAAAAGTATGTTGCCTGGCATGCAAAATACAAAATCAAGCAACATAGTA ************ ********** ***************************** ****** HS_haplotype1 AATTAGCCAAGCACATCCATTTTATTGGTTTGTAGCTATGTATCCTCACATGAGTCTGGC HS_haplotype2 AATTAGCCAGGCAGATCCATTTTATTGGTTTGTAGCTATGGATCCTCACATGAGTCTGGC HS_assemblymutate AATTAGCCAGGCAGATCTGTTTTATTGGTTTTTAGCTATGGATCCTCACATGAGTCTGGC ********* *** *** ************ ******** ******************* HS_haplotype1 TCGCAGTGAGCATTCATTAAAACCTGGTGGCGTGCTGTCAGAACTGGCCCTGCCTTAGCA HS_haplotype2 TCGCAGTGAGCATTCATTAAAACCTGGTGGCATGCTGTCAGAACTGGCCCTGCCTTAGAA HS_assemblymutate TCGCAGTGAGCATTCATTAAAACCTGGTGGCGTGCTGTCAGAACTGGCCCTGCCTTAGCA ******************************* ************************** * HS_haplotype1 CAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT HS_haplotype2 AAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT HS_assemblymutate CAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT *********************************************************** HS_haplotype1 CACTAGCCTACAGTGCTGAGGTGTAGTCTTACTTTGTTTGATTGTAGTCGGAGCATTACA HS_haplotype2 CTCTAGCCTACAGTGCTGAGGTGTAGTCATACTTTGTATGATTGTAGTCGGAGCATTACA HS_assemblymutate CACTAGCCTACAGTGCTGAGGTGTAGTCTTACTTTGTTTGATTGTAGTCGGAGTATTACA * ************************** ******** *************** ****** HS_haplotype1 ACACAGACGAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC HS_haplotype2 ACACAGACTAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC HS_assemblymutate AAACAGACTAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC * ****** *************************************************** HS_haplotype1 ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG HS_haplotype2 ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG HS_assemblymutate ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG ************************************************************ HS_haplotype1 AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGCCACTCTGAGGTCACACTGAGGCTTGT HS_haplotype2 AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGGCACTCTGAGGTCACACTGAGGCTTGT HS_assemblymutate AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGGCACTCTGAGGTCACACTGAGGCTTGT ********************************* ************************** HS_haplotype1 CCCTGGCCACTGAAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT HS_haplotype2 CCCTGGCCACTGAAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT HS_assemblymutate CCCTGGCCACAGGAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT ********** * *********************************************** HS_haplotype1 TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCTTGCCATAGAAA HS_haplotype2 TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCATGCCATAGAAA HS_assemblymutate TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCATGCCATAGAAA ************************************************ *********** HS_haplotype1 CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC HS_haplotype2 CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC HS_assemblymutate CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC ************************************************************ HS_haplotype1 GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACATAGCACT HS_haplotype2 GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACAGAGGACT HS_assemblymutate GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACAGAGGACT ***************************************************** ** *** HS_haplotype1 GAGCGGTAATTTCACAGGGTGCTGGGGGATGCCATCTGTAAAGAACAGATGAGCAAACAC HS_haplotype2 GAGCGGTATTTTCACAGGGTGCTGGGGGATGCCATCTGTAAATAACAGATGAGCAAACAC HS_assemblymutate GAGCGGTAATTTCACGGGGTGCTGGGGGATGCCATCTGTAAAGAACAGATGAGCAAACAC ******** ****** ************************** ***************** HS_haplotype1 ACATCTGACAGGTAAGTGGCTCAAGCAGAGGTTTCACTGCGACAGACTGCGCTCACTTGT HS_haplotype2 ACATCTGACAGGTACGTGGCTCAAGCAGAGGTTTCACTGCGACAGACTGCGCTCACTTGT HS_assemblymutate ACATCTGACAGGTACGTGGCTCAAGAAGAGGTTTCAATGCGACAGACTGCGATCACTTGT ************** ********** ********** ************** ******** HS_haplotype1 TACAGGCTCAAAAATAAGAAGTCTCTCTCTGCTGATTTGATCTAAATGCTCTCTAGTCTA HS_haplotype2 TACAGGCTCAAAAATAAGAAGTCTCTCTATGCTGATTTGATCTAAATGCTCTCTAGCCTA HS_assemblymutate TTCAGGCTGAAAAATAAGACGTCTCTCTCTGCTGATTTGATCTAAATGCTCTCTAGTCGA * ****** ********** ******** *************************** * * HS_haplotype1 ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACTAATGTGCTCGGCCCCC HS_haplotype2 ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACAAATGTGCTCGGCCCCC HS_assemblymutate ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACAAATGTGCTCGGCCCCC ******************************************* **************** HS_haplotype1 AGGAGCGGAGCAAAAGGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT HS_haplotype2 AGGAGCGAAGCAAAAGGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT HS_assemblymutate AGGAGCGGAGCAAAATGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT ******* ******* ******************************************** HS_haplotype1 GTGGGACTTCTCACCACCATCCCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT HS_haplotype2 GTGGGACTTCTCACCACCATACCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT HS_assemblymutate GTGGGACTTCTCACCACCATACCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT ******************** *************************************** HS_haplotype1 TCTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTC HS_haplotype2 ACTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTC HS_assemblymutate TCTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTT ********************************************************** HS_haplotype1 TACCCACAGCTACCTCATGCTGTCAGTATATATGGGGTGAAACCGAAGGAAGAATCGGGA HS_haplotype2 TACCCACAGCTACCTCATGCTGTCAGTATATATGGGGTGAAACCGAAGGAAGAATCGGGA HS_assemblymutate TACCCGCAGCTACCTCATGCTGTCAGTATATAGGGGGTGAAACCGAAGGAAGAATCGGGA ***** ************************** *************************** HS_haplotype1 GCTCTTGGACCATCCGCCTCATCTGATCCAGCCTCTCAGGGACTGGCAGTGGCTCAGTGT HS_haplotype2 GCTCTTGGGCCATCCGCCTCATCTGATCCAGCCTCTCAGGGACTGGCAGTGGCTCAGTGT HS_assemblymutate CCTCTTCGACCATCCGCCTCATCTGATCCAGCCTCTCAGGGAGTGGCAGTGGCTCAGTGT ***** * ********************************* ***************** HS_haplotype1 TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG HS_haplotype2 TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG HS_assemblymutate TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG ************************************************************ HS_haplotype1 TCCCTTGGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTTGTGTGCATTCC HS_haplotype2 TCCCTTAGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTCGTGTGCATTCC HS_assemblymutate TCCCTTGGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTTGTGTGCATTCC ****** ***************************************** *********** HS_haplotype1 AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGAGTGGG HS_haplotype2 AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGTGTGGG HS_assemblymutate AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGTGTGGT ****************************************************** **** HS_haplotype1 CGAAATTTGGTGTGGCCCCCATGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG HS_haplotype2 CGAAATTTGGTGTGGCCCCCATGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG HS_assemblymutate CCAAATTCGGTGTGGCCCCCCTGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG * ***** ************ *************************************** HS_haplotype1 TCCTTCAGCTCCTGATGAGGTTTGACCAAACACTAGCTAACTAAATTAATGTAGAAAGCC HS_haplotype2 TCCTTCAGCTCCTGGTGAGGTTTGACCAAACACTAGCAAACTATATTAATGTAGAAAGCC HS_assemblymutate TCCTTCAGCTCCTGGTGAGGTTTGACCAAACACTAGCAAACTATATTAATGTAGAAAGCC ************** ********************** ***** **************** HS_haplotype1 TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATAAAATAAACTATGAGATGTC HS_haplotype2 TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATACAATAAACTATGAGATGTC HS_assemblymutate TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATAAAATAAACTATGAGATGTC ***************************************** ****************** HS_haplotype1 GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC HS_haplotype2 GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC HS_assemblymutate GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC ************************************************************ HS_haplotype1 TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA HS_haplotype2 TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA HS_assemblymutate TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA ************************************************************ HS_haplotype1 ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA HS_haplotype2 ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA HS_assemblymutate ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA ************************************************************ HS_haplotype1 GGGGTAAATAGGGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA HS_haplotype2 GGGGTAAATAGCGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA HS_assemblymutate GGGGTAAATAGGGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA *********** ************************************************ HS_haplotype1 ATTTTCCCTGGTACAGTATTGGTGAGCCTGACCCTCCGCCTGGGTTCCCCAGACCCTGTC HS_haplotype2 ATTTTCCCTAGTACAGTATTGGTGAGCCTGACCCTCCGCCTGGGTTCCCCAGACCCTGTC HS_assemblymutate ATTTTCCCTAGTACAGTATTGGTGAGCCTGACCCTCTACCTGGGATCCCCAGACTCTGTC ********* ************************** ****** ********* ***** HS_haplotype1 TCTGAGACCAGGTTCTATCAAAATCCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT HS_haplotype2 TCAGAGACCAGGTTCTACCAAAATCCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT HS_assemblymutate TCTGAGACCAGGTTCTATCAAAATGCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT ** ************** ****** *********************************** HS_haplotype1 AAATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA HS_haplotype2 ACATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA HS_assemblymutate ACATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA * ********************************************************** HS_haplotype1 ATCTTCGCCTCAAAACGTGGGAGGGTAATATCAACATAGGCAAGAGCTCACTGGCCTCAG HS_haplotype2 ATCTTGGCCTCAAAACGTGGGAGGGTAACATCAACATAGGCAAGAGCTCACTGGCCTCAG HS_assemblymutate ATCTTCGCCTCAAAACGTGGGAGGGTAATATCAACATAGGCAAGAGCTCACTGGCCTCAG ***** ********************** ******************************* HS_haplotype1 GCTGGGTATACTATGTGAGGCTCGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA HS_haplotype2 GCTGGGTAAACTATGTGAGGCTTGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA HS_assemblymutate GCTGGGTAAACTATGTGAGGCTTGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA ******** ************* ************************************* HS_haplotype1 CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG HS_haplotype2 CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG HS_assemblymutate CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG ************************************************************ HS_haplotype1 GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTGAATAAATGTCTGTGCATACTT HS_haplotype2 GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTTAATAAATGTCTGTGCATACTT HS_assemblymutate GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTTAATAAATGTCTGTGCATACTT ************************************** ********************* HS_haplotype1 CACCCACTCCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG HS_haplotype2 CACCCACTGCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG HS_assemblymutate CACCCACTCCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG ******** *************************************************** HS_haplotype1 CCCTAAAGGCGTGAGATTTAACTCAGGCCCCAAATATGACGTGTCAAATTTATGGTATCT HS_haplotype2 CCCTAAAGGCGTGAGATTTAACACAGGCCCCATATATGACGTGTCAAATTTATGGTATCT HS_assemblymutate CCCTAAAGGCGTGAGATTTAACACAGGCCCCATATATGACGTGTCAAATTTATGGTATCT ********************** ********* *************************** HS_haplotype1 AGGGGACATCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG HS_haplotype2 AGGGGACGTCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG HS_assemblymutate AGGGGACGTCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG ******* **************************************************** HS_haplotype1 AGACTTGGACAGGGAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGTA HS_haplotype2 AGACTTGGACAGGAAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGTA HS_assemblymutate AGACTTGGACAGGAAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGCA ************* ******************************************** * HS_haplotype1 ATCCAAGCAGTAAACTGGGGGTTGGCTTAAGACTGCTGGGCACCCTCATGCTAATTACAA HS_haplotype2 ATCCAAGCAGTAAACTGGGGGTTGGCTTAAGACTGCTGGGCACCCTCATGCTAAGTACAA HS_assemblymutate ATCCAAGAATTAAACTGGGGGTTGGCTTAAGACCCCTGGGCTCCCTCATGCTAATTACAA ******* * *********************** ****** ************ ***** HS_haplotype1 CCCGCGTGTGGCTGGGCTGCTCCAAAACCACCCCTCGCTTATCCAGGAATTGGACTCAGT HS_haplotype2 CCCGCGAGTGGCTGGGCTGCTCCAAAACCGCGCCTCGCTTATCCGGGAATTGGACTCAGT HS_assemblymutate CCCGCGACTGGCTGGGCTGCTCCAAAACCGCGCCTCGCTTATCCGGGAATTGGACTCAGT ****** ********************* * ************ *************** HS_haplotype1 GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA HS_haplotype2 GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA HS_assemblymutate GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA ************************************************************ HS_haplotype1 CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACTGA HS_haplotype2 CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACGGA HS_assemblymutate CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACGGA ********************************************************* ** HS_haplotype1 GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTTGGAGATAAAAGAGA HS_haplotype2 GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTAGGAGATAAAAGAGA HS_assemblymutate GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTTGGAGATAAAAGAGA ********************************************* ************** HS_haplotype1 GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG HS_haplotype2 GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG HS_assemblymutate GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG ************************************************************ HS_haplotype1 CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA HS_haplotype2 CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA HS_assemblymutate CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA ************************************************************ HS_haplotype1 ATAAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATACTACTAC HS_haplotype2 ATCAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATGCTACTAC HS_assemblymutate ATCAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATGCTACTAC ** ************************************************* ******* HS_haplotype1 ATGTGATCAGAATTGTTGGAAGGTGCGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC HS_haplotype2 ATGTGATCAGAAATGTTGGAAGGTGAGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC HS_assemblymutate ATGTGATCAGAATTGTTGGAAGGTGTGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC ************ ************ ********************************** HS_haplotype1 ACCAAGTGCTTTTCCTCTCTCCCTGCTCGGGCCTGTGTCTCACCCAAAAACCTTACTCAA HS_haplotype2 ACCAAGTGCTTTTCCTCTCTCCCTGCCCGGGCCTGTGTCTCACCCAAAAACCTTACTGAA HS_assemblymutate ACCAAGTGCTTTTCCTCTCTCCCTGCCCGGGCCTGTGTCTCACCCAAAGACCTCACTGAA ************************** ********************* **** *** ** HS_haplotype1 AATATTTTTTTTTCAGTTTCCACTGGGCGCAGCCACTCCTGGGCAAAGCATACTGAGAGC HS_haplotype2 AATATTTTTTTTTCAGTTTCCACTGGGCGCAGCCACTCCTGGGCAAAGCATACTGAGAGC HS_assemblymutate AATATTTTTTTTTCAGCTTCCACTGGGCGCAGCCACTCCAGGGCAAAGCATACTGAGAGC **************** ********************** ******************** HS_haplotype1 AGCATCCATAATCTACGCTGGGCACTGTAACCCTTGAGGACCATCTCTGGCCTGAGTGCA HS_haplotype2 AGCATCCATAATCTACGCTGAGCTCTGTAACCCTTGAGGACCATCTCTGGCCTGAGTGCA HS_assemblymutate AGCCTCCATAATCTACGCTGAGCTCTGTAACCCTTGAAGACCATCTCTGGCCTGAGTGCA *** **************** ** ************* ********************** HS_haplotype1 ATAAAGTCTAAGTAGTAACACTCCTCCTCAGTATCCAGGAGAAAGGTTTAATGCTCATCA HS_haplotype2 ATAAAGTCTAAGTAGTAACACTCCTCCTCAGTATCCAGGAGAAAGGTTTAATGCTCATCA HS_assemblymutate ATAAAGTCTAAGTAGTAACACTCCTCCTAAGTATCCACGAGAAAGGTTTAATTCTCATCA **************************** ******** ************** ******* HS_haplotype1 GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT HS_haplotype2 GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT HS_assemblymutate GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT ************************************************************ HS_haplotype1 TATTATCCCGCTCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA HS_haplotype2 TATTATCCCGCCCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA HS_assemblymutate TATTATCCCGCTCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA *********** ************************************************ HS_haplotype1 AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT HS_haplotype2 AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT HS_assemblymutate AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT ************************************************************ HS_haplotype1 GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT HS_haplotype2 GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT HS_assemblymutate GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT ************************************************************ HS_haplotype1 ATAAAAAACTGGATATCTCAGCTCACCTGGTTGCATAGTAGAATGGGGGACGAGATACTT HS_haplotype2 ATAAAAAACTGGATATCTCAGCTCACCTGGTTTCATAGTAGAATGGGGGACGAGATACTT HS_assemblymutate ATAAAAAACTGGATATCTCAGCTCACCTGGTTGCATAGTAGAATGGGGGACGAGATACTT ******************************** *************************** HS_haplotype1 TTTTTTCTATACTCCTGCCCTTCATTAAGTAGATTTGCCTCCCATCTTGGTCATCTGAAG HS_haplotype2 TTTTTTCTATACTCCTGCCCTTCATTAAGTAGTTTTGCCTCCCATCTTGGTCATCTGAAG HS_assemblymutate TTTTTTCTATACTCCTGCCCTTCATTAAGTAGATTTGCCTCCCATCTTGGTCATCTGAAG ******************************** *************************** HS_haplotype1 GAAGCTCATCTGTGGCAAAATAGGCAGAGTTCCTTGGATTTGTGAGAAGTAACAGCCTCA HS_haplotype2 GAAGCTCATCTGAGGCAAAATAGGCAGAGGTCCTTGGATTTGTGAGAAGTAACAGCGTCA HS_assemblymutate GAAGCTCATCTGAGGCAAAATAGGCAGAGGTCCTTGGATTTGTGAGAAGTAACAGCGTCA ************ **************** ************************** *** HS_haplotype1 CAACCTTAAGATGGAGGAAAAAATTGCTCAGAGATGATATATTTCTTTTGTTTAACTCAT HS_haplotype2 CAACCTTAAGATGGAGGAAAAAATTGCTCAGAGATGATATATTTCTTTTGTCTAACTCAT HS_assemblymutate CAACCTTAAGATGGAGGAAAAAATTGCTCAGTGATGAAATATTTCTTTTGTTTAACTCAT ******************************* ***** ************* ******** HS_haplotype1 CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACATAGCCCTTTTCTA HS_haplotype2 CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACCTAGCCCTTTTCTA HS_assemblymutate CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACCTAGCCCTTTTCTA ********************************************** ************* HS_haplotype1 TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC HS_haplotype2 TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC HS_assemblymutate TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC ************************************************************ HS_haplotype1 GTTGTTTCTCCTGAAAATCATCCCTTGAATTACACACCCCTAGCTAATCCTTTCACGAAA HS_haplotype2 GTTGTTTCTCCTGAAAATCATGCCTTGAATTACACACCCCTAGCTAATCCTTTCACGAAA HS_assemblymutate GTTGTTTCTCCTGAAAATCATGCCTTGAATTACACACCCCTAGCTAATCCTTTTACGAAA ********************* ******************************* ****** HS_haplotype1 CTATGAATGATAGTAGCTTTTTTTGAGCAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC HS_haplotype2 CTATGAATGATAGTAGCTTTTTTTGAGCAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC HS_assemblymutate CTACGAATGATAGTAGCTTTTTTTGAGTAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC *** *********************** ******************************** HS_haplotype1 TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATCCAGCAATGACTTTTATGTAATG HS_haplotype2 TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATTGAGCAATGTCTTTTATGTAATG HS_assemblymutate TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATTGAGCAATGTCTTTTATGTAATG ************************************* ******* ************* HS_haplotype1 TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC HS_haplotype2 TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC HS_assemblymutate TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC ************************************************************ HS_haplotype1 CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT HS_haplotype2 CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT HS_assemblymutate CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT ************************************************************ HS_haplotype1 CCTCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA HS_haplotype2 CCCCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA HS_assemblymutate CCTCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA ** ********************************************************* HS_haplotype1 TGAATTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACACCTGCCTCTGCAG HS_haplotype2 TGACTTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACACCTCCCTCTGCAG HS_assemblymutate TGACTTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACAGCGCCCTCTGCAG *** ******************************************* * ********* HS_haplotype1 GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATGGAGCCTGTATTGGAGAATAATT HS_haplotype2 GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATTGAGCCTGTATTAGAGAATAATT HS_assemblymutate GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATGGAGCCTGTATTGGAGAATAATT ************************************* *********** ********** HS_haplotype1 TGTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG HS_haplotype2 TTTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG HS_assemblymutate TGTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG * ********************************************************** HS_haplotype1 GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC HS_haplotype2 GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC HS_assemblymutate GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC ************************************************************ HS_haplotype1 GGTGGGGCACCTCTGGATTGATCCAAATGAATATTTATATTTGCATCAAATCTGGAAATA HS_haplotype2 GGTGGGGCACCTCTAGATTGATCCAAATGAATATTTATATTTGCATCAAATCTGGAACTA HS_assemblymutate GGTGGGGCACCTCTAGATTGATCCAAATGAATATTTATATGTGCATCAACTCTGGAACTA ************** ************************* ******** ******* ** HS_haplotype1 CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA HS_haplotype2 CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA HS_assemblymutate CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA ************************************************************ HS_haplotype1 GTGAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT HS_haplotype2 GTCAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT HS_assemblymutate GTCAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT ** ********************************************************* HS_haplotype1 ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG HS_haplotype2 ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG HS_assemblymutate ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG ************************************************************ HS_haplotype1 ATCCTTCCATGACACTGCTTATGTTGTGAGACGGCTCACTAAGTATGAAGAATTAGGTGA HS_haplotype2 ATCCTTCCATGACACTGCTTATGTTGGGAGACGGCTCACTAAGTATGAAGAATTAGGTGA HS_assemblymutate ATCCTTCCATGACACTGCTTATGTTGGGAGACGGCTCACTAAGTATGAAGAATTAGGTGA ************************** ********************************* HS_haplotype1 CGAAGATGTGATTAGTTTTATTTAATTGCTCGACAGATAAGGACCGCAAACATGGTTTCT HS_haplotype2 CAAAGATTTGATTAGTTTTATTTAATTGCTCGACAGATACGGACCGCAAACATGGTTTCT HS_assemblymutate CGAAGATGTGATTAGTTTTATTTAATTGCTCGACAGATAAGGACCGCAAACATGGTTTCT * ***** ******************************* ******************** HS_haplotype1 TTTTTTACAGGCTCCTGTGTTTCGTTTACAGAAGCTTATCTACCTTCAAGTAAAAGGCTC HS_haplotype2 TTTTTTACAGGCTCCTGTGTTTCTTTTACAGAAGCTTATCTACCCTCAAGTAAAAGGCTC HS_assemblymutate TTTTTTACAGGCTCCTGTGTTTCTTTTACAGAAGCTTATCTGCCCACAAGTAAAAGGCTC *********************** ***************** ** ************** HS_haplotype1 ACGCCTGGCTTAGTAGAGAAAAATTGCCGGGCGCGCGCCATGGACGCACGGTCAGGCTGG HS_haplotype2 ACGCCTGGCTTAGTAGAGAAAAATTGCCGGGCGCGCGCCATGGACGCACGGTCAGGCTGG HS_assemblymutate ACGCCTGGCTTGGTAGAGAAATATTGCCGGGCGCGCGCCATGGACGCCCGGTCAGTCTGG *********** ********* ************************* ******* **** HS_haplotype1 GCGCGGTTCATGAGAGTCTTCAAGGCAACTTTGACTGTGATCCAAATACTTAACTTCGGA HS_haplotype2 GCGCGGTTCATGAGAGTCTTCAAGGCAACTCTGACTGTGATCCAAATACTTAACTTCGGA HS_assemblymutate GCGCGGTTCATGAGAGTCTTTAAGCCAACTCTGACTGTGATCCAAATACTTAACTTCGGA ******************** *** ***** ***************************** HS_haplotype1 CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG HS_haplotype2 CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG HS_assemblymutate CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG ************************************************************ HS_haplotype1 CTATCTGCTTTGCCTGCTAATTTTTTCTGAGCTGTTTATGTATTTCCTGCAGAGCATGCT HS_haplotype2 CTATCTGCTTTGCCTTCTAATTTTTTCTGAACTGTTTATGTATTTCCTGCAGAGCATGCT HS_assemblymutate CTATCTGCTTTGCCTTCTAATTTTTTCTGAACTGTTTATGTATTTCCTGCAGAGCATGCT *************** ************** ***************************** HS_haplotype1 CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGACATCTGGGTCTCAAC HS_haplotype2 CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGTCATCTGGGTCTCAAC HS_assemblymutate CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGACATCTGGGTCTCAAC ******************************************** *************** HS_haplotype1 CTTCAACTGACCTCCAACTTATGGGGGCTTCCGGCTGGAAAAACTAGATCCAGCTAGGGC HS_haplotype2 CTTCAACTGACCTCCAACTTATGGGGGCTTCCGGCTGGAAAAACTAGATCCAGCTAGGGC HS_assemblymutate CTCCAACTAACCTCCAACTTATGGGGGCCTCCGGCTGGAAAAACTAGATCCAGCTAGGGC ** ***** ******************* ******************************* HS_haplotype1 TGGATTACACAAAGACTTTGCAGTCCCCAACACCATCTCCCTGAGGCCCTTTTACTGGGA HS_haplotype2 TGGATTACACAAAGACTTTCCAGTCCCCAACTCCATCTCCCTGAGGCCCTTTTACTGGGA HS_assemblymutate TGGATTACACAAAGACTTTGCAGTCCCCAACACCATCTCCCTGAGGCCCTTTTACTGGGA ******************* *********** **************************** HS_haplotype1 AAAAGTCACCCCCTCTCCCAAGGGTTCCTTTAGTACCCGGGCGGAGGGTTTAGGTGACGG HS_haplotype2 AAAAGTCACCCCCTCTCCCAAGGGTTCCCCTAGTACCCGGGCGGAGGGTTTAGGTGACGG HS_assemblymutate AAAAGTCACCCCCTCTCCCAAGGGTTCCCCTAGTACCCGGGCGGAGGGTTTAGGTGACGG **************************** ****************************** HS_haplotype1 ATTGTATGGTACACTGCTTTAGTAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA HS_haplotype2 ATTGTATGGCACACTGCCTTAGAAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA HS_assemblymutate ATTGTATGGTACACTGCTTTAGTAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA ********* ******* **** ************************************* HS_haplotype1 CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG HS_haplotype2 CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG HS_assemblymutate CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG ************************************************************ HS_haplotype1 ACGGGCACTGGAGTTGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC HS_haplotype2 ACGGGCACTGGAGTGGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC HS_assemblymutate ACGGGCACTGGAGTTGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC ************** ********************************************* HS_haplotype1 TGGATAAAAAAGGTTGTTTGGAATCTTTTTCCAGCTTTTTGTGCAGTTTCTCCATTCTCA HS_haplotype2 TGGATAAAAAAGGTTGTTTGGAATCTTTTTCCAGCTTTTTGTGCAGTTTCTCCATTCTCA HS_assemblymutate TGGATAAAAAAGGTTGTTTGGAATCTTTTTACAGGTTTTTGTGCAGTTTCTCCATTCTCA ****************************** *** ************************* HS_haplotype1 TTGCATGATGTTTCAAGCAAACTTGGGTCTATGTGCCTGCAAGGAAGGAAATAAAATTTG HS_haplotype2 TTGCATGATGTTTCAAGCATACTTGGGTCTATGTGCCTGCAAGGATGAAAATAAAAATTG HS_assemblymutate TTGCATGATGTTTCAAGCAAACTTGGGTCTATGTGCCTGCAAGGAAGGAAATAAAATTTG ******************* ************************* * ******** *** HS_haplotype1 AGATAAGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG HS_haplotype2 AGATACGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG HS_assemblymutate AGATAAGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG ***** ****************************************************** HS_haplotype1 TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG HS_haplotype2 TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG HS_assemblymutate TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG ************************************************************ HS_haplotype1 ACGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT HS_haplotype2 ATGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT HS_assemblymutate ATGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT * ********************************************************** HS_haplotype1 CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA HS_haplotype2 CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA HS_assemblymutate CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA ************************************************************ HS_haplotype1 AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA HS_haplotype2 AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA HS_assemblymutate AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA ************************************************************ HS_haplotype1 GTAGCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG HS_haplotype2 GTATCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG HS_assemblymutate GTAGCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG *** ******************************************************** HS_haplotype1 ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGACATGGAGGCCTCGGTCAAAGAAGC HS_haplotype2 ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGAGATGGAGGCCTCGGTCAAACAAGC HS_assemblymutate ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGAGATGGAGGCCTCGGTCAAACAAGC ************************************ ****************** **** HS_haplotype1 ATTTTATGCAACTAAATGGTTGTGCTGTGAGCCAGAAGCTATGTGCCACCCAAATAAAAC HS_haplotype2 ATTTTATGCGACTAAATGGTTGTGCTGTGAGCCAGAAACTATGTGGCACCCAAATAAAAC HS_assemblymutate ATTTTATGCGACTAAATGGTTGTGCTGTGAGCCAGAAGCTATGTGCCACCCAAATAAAAC ********* *************************** ******* ************** HS_haplotype1 GGAGCAAGGCCTCCAGCAGACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGCAATGT HS_haplotype2 GGAGCAAGGCCTCAAGCAGACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGAAATGT HS_assemblymutate GGAGCAAGGCCTCAAGCATACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGAAATGT ************* **** *********************************** ***** HS_haplotype1 GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCCCCAAATATGAG HS_haplotype2 GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCTCCAAATATGAG HS_assemblymutate GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCCCCAAATATGAG ************************************************ *********** HS_haplotype1 GCATTTATTTCTCCTTCAAAATAAGTACTACCATCCTCCCTGGGCCTAAATCCCTTCTCC HS_haplotype2 GCATTTATTTCGCCTTCAAGATAAGTACTACCATCCTCCCTGGGCCTAAATCCATTCTCC HS_assemblymutate GCATTTATTTCGCCTTCAAGATAAGTACTACCATCCTCCCTGGGCCTAAATCCATTCTCC *********** ******* ********************************* ****** HS_haplotype1 ACAGAGGTCACCCGGGGTAGGATTGGCCAAAGGCTCGCGCCCGGGCGCACCGCGGTACTT HS_haplotype2 ACAGAGGTCACCCAGGGTAGGGTTGGCCAAAGGGTCGCGCCCGGGCGCACCGCGGTACTT HS_assemblymutate ACAGAGGTCACCCGGGGTAGGATTGGCCAAAGGCTCGCGCCCGGGCGCACCGCGGTACTT ************* ******* *********** ************************** HS_haplotype1 AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATCGCTGGCCAACACCCAGTCAAG HS_haplotype2 AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATTGCTGGCCAACACCCAGTCAAG HS_assemblymutate AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATTGCTGGCCAACACCCAGTCAAG ************************************** ********************* HS_haplotype1 TACAGTGAGTCTTGAATAGTAGACCAAATCGTGTACGGGAGTTGAAAAATGAAGATCCAG HS_haplotype2 TGCAGTGAGTCTTGACTAGTAGACCAGATCGTGTACGTGAGTTGAAAAATGAAGATCCAG HS_assemblymutate TGCAGTGAGTCTTGAATAGTGGACCAAATCGTGTACGGGAGTTGAAAAATTAAGATCCAG * ************* **** ***** ********** ************ ********* HS_haplotype1 CCTTCCTCGTGAGGCAGGAGAGAACAAGGGACATATTATTATGTAACTGGAAGCTACTGG HS_haplotype2 CCTTCTTCCTGAGGCAGGAGAGAACAAGGGACATATTATAATGCAACTGGAAGCTACTGG HS_assemblymutate CCTTCTTCCTGAGGCAGGAGAGAACAAGGGACATATTATAATGCAACTGGAAGCTACTGG ***** ** ****************************** *** **************** HS_haplotype1 GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATGATACCATTCCAG HS_haplotype2 GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATCATACCATACCAG HS_assemblymutate GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATGATACCATTCCAG *********************************************** ******* **** HS_haplotype1 ATACTTGCATTTCATTATTTATTTTTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG HS_haplotype2 ATACTTGCATTTCATTATTTATTTCTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG HS_assemblymutate ATACTTGCATTTCATTATTTATTTCTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG ************************ *********************************** HS_haplotype1 CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAAACAG HS_haplotype2 CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAATCAG HS_assemblymutate CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAAACAG ******************************************************** *** HS_haplotype1 GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT HS_haplotype2 GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT HS_assemblymutate GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT ************************************************************ HS_haplotype1 TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA HS_haplotype2 TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA HS_assemblymutate TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA ************************************************************ HS_haplotype1 ACAAAACGTTTTCCAATTCCTCTTCTCCCATTATGAGATGATGGGGTAAACTAGCTCCTT HS_haplotype2 ACAAAACGTTTTCCAATGCCTCTTCTCACATTATGAGATGATGGGGTAAACTAGCTCCTT HS_assemblymutate ACAAAACGTTTTCCAATGCCTCTTCTCACATTATGAGATGATGGGGTAAACTAGCTCCTT ***************** ********* ******************************** HS_haplotype1 GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA HS_haplotype2 GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA HS_assemblymutate GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA ************************************************************ HS_haplotype1 TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA HS_haplotype2 TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA HS_assemblymutate TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA ************************************************************ HS_haplotype1 GGAATGGGAATAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGAATAACATTTAA HS_haplotype2 GGAATGGGAAAAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGTATAGCATTTAA HS_assemblymutate GGAATGGGAATAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGAATAACATTTAA ********** ************************************* *** ******* HS_haplotype1 AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCATATTTGGTTAATT HS_haplotype2 AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCAAATTTGGTTTATT HS_assemblymutate AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCAAATTTGGTTTATT *********************************************** ******** *** HS_haplotype1 AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG HS_haplotype2 AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG HS_assemblymutate AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG ************************************************************ HS_haplotype1 TCTGTCTCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG HS_haplotype2 TCTGTCCCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG HS_assemblymutate TCTGTCCCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG ****** ***************************************************** HS_haplotype1 TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAACACTCTGTTTTGAT HS_haplotype2 TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAGCACTCTATTTTGAT HS_assemblymutate TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAACACTCTGTTTTGAT ********************************************* ****** ******* HS_haplotype1 TACATCAGAGGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT HS_haplotype2 TACAACAGAGGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT HS_assemblymutate TACAACAGATGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT **** **** ************************************************** HS_haplotype1 GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT HS_haplotype2 GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT HS_assemblymutate GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT ************************************************************ HS_haplotype1 CTGTGTTGCAGTGCATCTTATATGACTAGAATGCTAATTATCTATCGATCTACAGGAGAT HS_haplotype2 TTGTATTGCAGTGCATCTTAGATGACTTGAATGCTAATTATCTATCGATCTACAGGAGAT HS_assemblymutate TTGTATTGCAGTGTTTCTTAGATGACTTGAATGCTAATTATCTATCGATCTACAGGAGAT *** ******** ***** ****** ******************************** HS_haplotype1 TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT HS_haplotype2 TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT HS_assemblymutate TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT ************************************************************ HS_haplotype1 CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT HS_haplotype2 CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT HS_assemblymutate CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT ************************************************************ HS_haplotype1 ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA HS_haplotype2 ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA HS_assemblymutate ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA ************************************************************ HS_haplotype1 CAGACCGACTGACCTGTCTTGCTCTGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCAA HS_haplotype2 CAGACCGACTGACCTGTCTTGCTCAGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCAA HS_assemblymutate CAGACCGACTGACCTGTCTTGCTCAGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCGA ************************ ********************************* * HS_haplotype1 ATGTCCTTCTCACTTGATATATAAATACGGTTCAGTTTTACTGCAATGGTTGTGGCAGAA HS_haplotype2 ATGTCCTTCTCACTTGATATATAAATACGGTTCAGTTTTACTGCAATGGTTGTGGCAGAA HS_assemblymutate ATGTCATTCTCACTTGATATATAAATACGGTTCCGTTTTACTGCAATGGTTGTGGCAGAA ***** *************************** ************************** HS_haplotype1 GGTACAGCCTCACTGGAAGTATTGCTGGACCTAATTGAATACACGAGCTCAGAACTCACG HS_haplotype2 GGTACAGCCTCACTGGAAGTATTACTGGACCTAATTGAATACACGAGCTCAGATCTCACG HS_assemblymutate GGTACAGCCTCACTGGAAGTATTACTGGACCTAATTGAATACACGAGCTCAGATCTCACG *********************** ***************************** ****** HS_haplotype1 CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG HS_haplotype2 CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG HS_assemblymutate CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG ************************************************************ HS_haplotype1 GTGTGTTTGCAAGCTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGTGG HS_haplotype2 GTGTGTTTGCAAACTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGAGG HS_assemblymutate GTGTGTTTGCAAACTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGAGG ************ ******************************************** ** HS_haplotype1 TGCCTGGGGAGGAAATCAAATGGGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA HS_haplotype2 TGCCTGGGGAGGAAATCAAATGAGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA HS_assemblymutate TGCCTGGGGAGGAAATCAAATGAGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA ********************** ************************************* HS_haplotype1 CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTTTTGTTCTTAC HS_haplotype2 CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTCTTGTTCTGAC HS_assemblymutate CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTCTTGTTCTGAC ************************************************* ******* ** HS_haplotype1 ACCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTCTGATCAGTAGCTGACTTATTTTTGT HS_haplotype2 AGCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTGTGATCAGTAGCTGACTTATTTTTGT HS_assemblymutate AGCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTCTGATCAGTAGCTGACTTATTTTTGT * ******************************** ************************* HS_haplotype1 TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCTGGCCATGA HS_haplotype2 TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCCGGCCGTGA HS_assemblymutate TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCCGGCCGTGA *************************************************** **** *** HS_haplotype1 CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT HS_haplotype2 CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT HS_assemblymutate CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT ************************************************************ HS_haplotype1 CAACTACAGGTTACCATCAGTCCCTGGGCATAAAATGCAGACAGCAAGCACTCCCTATGT HS_haplotype2 CAACTACAGGTCACCATCAGACCCTGGGCATAAAATTCAGACAGCAAGCACTCCCTCTGT HS_assemblymutate CAACTACAGGTCACCATCAGACCCTGGGCATAAAATTCAGACAGCAAGCACTCCCTCTGT *********** ******** *************** ******************* *** HS_haplotype1 AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA HS_haplotype2 AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA HS_assemblymutate AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA ************************************************************ HS_haplotype1 AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTGATGTTCAGTCTTCTA HS_haplotype2 AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTTATGTTCAGTCTTCTC HS_assemblymutate AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTTATGTTCAGTCTTCTC ******************************************** ************** HS_haplotype1 CACCTCAATACCTGATTGAGACCACAGAGAAGTATGGGGGCTGTGGTAGCCGGCCTTGCA HS_haplotype2 CACCTCAATACCTGATTGAGATCACAGAGAAGTATGGGGGCTGTGGTAGCCAGCCTTGAA HS_assemblymutate CACCTCAATACCTGATTGAGACCACAGAGAAGTATGGGGGCTGTGGTAGCCGGCCTTGCA ********************* ***************************** ****** * HS_haplotype1 AAAAAAACAAACTTATTTTAAAGTAGCAATCAAGGCCCTCTGCCTCTTTAAGCCATTCGG HS_haplotype2 AAAAAAACAAACTTATTTTAAAGTAGCAAGCAAGGCCCTCTGCCTCTTTAAGCCATTCGG HS_assemblymutate AAAAAAACAAACATATTATAAAGTAGCAAGCAAGGCCCTCTGCCTCTTTTAGCCATTCGG ************ **** *********** ******************* ********** HS_haplotype1 GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG HS_haplotype2 GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG HS_assemblymutate GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG ************************************************************ HS_haplotype1 CTGCCACCACCGCGCGTGACTGGGGGTGGGAGTGTAAACATGCGAGTAGACACCTGGATT HS_haplotype2 CTGCCACCACCGCGCGTGACTGGGGGTGCGTGTGTAAACATGCGAGTAGACACCTGTATT HS_assemblymutate CTGCCACCACCGCGCGTGACTGGGGGTGCGTGTGTAAACATGCGAGTAGACACCTGTATT **************************** * ************************* *** HS_haplotype1 CTTGCTTCCCGGCTGTTCCTTCCTTGAAGTATTTTACAATTATTCAACAACCTGGTGGCA HS_haplotype2 CTTGCTTCCCGGCTGTTCCTTCCTTGATGTATTTTACAATTATTCAACATCCTTCTGGCA HS_assemblymutate CTTGCTTCCCGGCTGTTCCTTCCTTGAAGTATTTTACAATTATTCAACAACCTGGTGGCA *************************** ********************* *** ***** HS_haplotype1 TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATGCAGATGATC HS_haplotype2 TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATTCAGATGATC HS_assemblymutate TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATTCAGATGATC ************************************************** ********* HS_haplotype1 ATGGTGCCCTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT HS_haplotype2 ATGGTGCACTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT HS_assemblymutate ATGGTGCACTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT ******* **************************************************** HS_haplotype1 CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC HS_haplotype2 CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC HS_assemblymutate CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC ************************************************************ HS_haplotype1 ATCAACCCATTTGTAATATCGAGACCTGTAATTTCAGTTGTTACAGAAGTCTATGCAGAG HS_haplotype2 ATCAACCCATTTGTAATATCGAGACCTGTAATGTCAGTTGTTACAGAAGTCTATGCAGAG HS_assemblymutate ATCAACCCATTTGTAATATCGAGACCTGTAATTTCAGTTGTTACAGAAGTCTATGCAGAG ******************************** *************************** HS_haplotype1 GATTCTACAAACCTATTTTTATTTAAATCCAACAAACGGGCGGGCTCAGGATTACTTCTC HS_haplotype2 GATTCTACAAACCTAATTTTATTTAAATCCAACAAACGGGCGGGCACAGGATTACTTCTC HS_assemblymutate GATTCTACAAACCTAATTTTATTTAAATCCAACAAACGGGCGGGCACAGGATTACTTCTC *************** ***************************** ************** HS_haplotype1 CCTCAAGGCCTCGGCACTCAAGGGATGGTATGGCTGGCGCCCTGCCTCCGGGCATAGGCT HS_haplotype2 CCTCAAGGCCTCGGTACTCAAGGGATGGTATGGCTGGCGCCCTGCCTCCGGGCATGGGCT HS_assemblymutate CCTCAAGGCCTCGGCACTCAAGTGATGGTATGGTCGGCGCGCTGCCTCCGGGCATAGGCT ************** ******* ********** ***** ************** **** HS_haplotype1 GAGTCACCTGTGTTTTCTATTTTACAAGTGAAATTTATAATGAGATAGTGGGTAGACCAC HS_haplotype2 GAGTCACCTGGGTTTTCTATTTTACAAGTGAAATTTATAATGAGAAAGTCGGTAGACCAC HS_assemblymutate GAGTCACCTGGGTTTTCTATTTTACAAGTGAAATTTATAATGAGAAAGTCGGTAGACCAC ********** ********************************** *** ********** HS_haplotype1 TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCCCCATGTTGCCAGACCCAGTTAC HS_haplotype2 TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCGCCATGTTGCCAGACCCAGTTAC HS_assemblymutate TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCCCCATGTTGCCAGACCCAGTTAC ************************************* ********************** HS_haplotype1 AATAGCTGAGGTTAACAGCTAAGGGAGCGTTGGAGACGGAGAAACAGCACTGGAGAATGA HS_haplotype2 AATAGCTGAGGTTAACAGCTAAGGGAGAGTTGGAGACTGAGAAACAGCACTGGAGAATGA HS_assemblymutate AATAGCTGAGGTTAACAGCTAAGGGAGAGTCGGAGACTCAGAAACAGCACTGGAGAATGA *************************** ** ****** ********************* HS_haplotype1 AGAATAATATAACAAATCTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG HS_haplotype2 AGAATAATATAACAAATCTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG HS_assemblymutate AGAATAATATAACAAATTTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG ***************** ****************************************** HS_haplotype1 GCGCCCCCTCTGAACTGCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGATCTGCTAC HS_haplotype2 GCGCCCCCTCTGAACTGCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGATCTGCTAC HS_assemblymutate GTGACCCCTCTGAACTTCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGAACTGCTAC * * ************ *********************************** ******* HS_haplotype1 CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG HS_haplotype2 CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG HS_assemblymutate CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG ************************************************************ HS_haplotype1 CAGAGTAGCCAGGGTATCCACCTTGCAGGCCCGGGAGCATAGGTTTTCATTAACCTCCCC HS_haplotype2 CAGAGTAGCCAGGGTATCCATCTTGCACCCCCGGGAGCATAGGTTTTCATTAACCTCCCC HS_assemblymutate CAGAGTAGCCAGGGTATCCATCTTGCACCCCCGGGAGCATAGGTTTTCATTAACCTCCCC ******************** ****** ******************************* HS_haplotype1 AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCCGATTC HS_haplotype2 AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCAAATTC HS_assemblymutate AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCCGATTC ****************************************************** **** HS_haplotype1 TGTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTCA HS_haplotype2 TCTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTAA HS_assemblymutate TGTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTAA * ******************************************************** * HS_haplotype1 TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA HS_haplotype2 TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA HS_assemblymutate TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA ************************************************************ HS_haplotype1 TGGGCCTTCATAATGAAGTTGTTTAGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG HS_haplotype2 TGGGGCTTCATAATGAAGTTGTTTGGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG HS_assemblymutate TGGGGCTTCATAATGAAGTTGTTTGGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG **** ******************* *********************************** HS_haplotype1 AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGATCCTTTTTTGCAG HS_haplotype2 AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGCTCCTTTTTTGCAG HS_assemblymutate AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGATCCTTTTTTGCAG ********************************************** ************* HS_haplotype1 CATAGTGTATTCAATGTGATGACTGGGACTGTGAAATACAAGAGACCCAAAGCGAGCCAC HS_haplotype2 CATAGTGTATTCAATGTGATGACTGAGACTGTGAAATATAAGAGACCCAAAGCGAGCCAC HS_assemblymutate CATAGTGTATTCAATGTGATGACTGAGACTGTGAAATATAAGAGACCCAAAGCGAGCCAC ************************* ************ ********************* HS_haplotype1 ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCACTCGTTTGAAGAATGCA HS_haplotype2 ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCAATCGTTTGAAGAATGCA HS_assemblymutate ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCACTAATTTGAAGAATGCA ******************************************* * ************* HS_haplotype1 GCAGCAAACAAACCCTACTTGAAAGTTACCTCATTATGTCTTATTGCTACAGCAAAAGCC HS_haplotype2 GCAGCAAACAAACCCTACTTGAATGTTACCTCATTATGTGTTATTGCTACAGCAAAAGCC HS_assemblymutate GCAGCAAACAAACCCTACTTGAATGTTACCTCATTATGTGTTATTGCTACAGCAAAAGCC *********************** *************** ******************** HS_haplotype1 AACGACCGGCACCCCAACCGTGGCTTCATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA HS_haplotype2 AACGACCGGCACCCCAACCTTGGCTTCATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA HS_assemblymutate AACGACCGGCACCCAAACCGTGGCTACATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA ************** **** ***** ********************************** HS_haplotype1 AACTCACCATACAGAGGGATTAAACTGAAGAGTCTTAACAGGGAGTGAGTGGAGGTGAGG HS_haplotype2 AACTCACCATTCAGAGGGATTAAACTGAAGAGTCTTGACAGGGAGTGAGTGGAGGTGGGG HS_assemblymutate AACTAACCATTCCGAGGGATTAAACTGAAGAGTCTTGACAGGGAGTGAGTGGAGGTGGGG **** ***** * *********************** ******************** ** HS_haplotype1 GGAGCCCAGCCATCAGTTTGATGACTTTTCCCTTATGACTGTTGCCCGGGCGGGTGGTCT HS_haplotype2 GGAGCCCAGCTATCAGTTTGATGACTTTTCCCTTATGACTGTTGGCCGGGCGGGTGATCT HS_assemblymutate GGAGCCCAGCTATCAGTTTGATGACTTTTCCCTTATGACTGTTGCCCGGGCGGGTGGTCT ********** ********************************* *********** *** HS_haplotype1 GAAACCAAATTTGATTCTCAAACATGTGTCAGTAATTTAAAAGGAGGGACTTTACTGAGA HS_haplotype2 GAAACCAAATTTGATTCTCAAACATGTGTCAGTAATTCAAAAGGAGGGACTTGACTGAGA HS_assemblymutate GAAACCAAATTTGATTCTCAAACCTGTGTCTGTAATTCAAAAGGAGGCACTTGACTGAGA *********************** ****** ****** ********* **** ******* HS_haplotype1 TGATTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC HS_haplotype2 TGCTTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC HS_assemblymutate TGATTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC ** ********************************************************* HS_haplotype1 TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTTATGG HS_haplotype2 TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTGATGG HS_assemblymutate TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTGATGG ******************************************************* **** HS_haplotype1 ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAATGATGGGGGGGGTGGAATAAAGC HS_haplotype2 ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAAGGATGGGGGGGGTGGAATAAAGC HS_assemblymutate ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAATGATGGGGGGGGTGGAATAAAGC ************************************* ********************** HS_haplotype1 ATTTCTCACTTGATAAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC HS_haplotype2 ATTTCTCACTTGATCAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC HS_assemblymutate ATTTCTCACTTGATCAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC ************** ********************************************* HS_haplotype1 TAGAGGGTCAGTCTGTAAGCATTCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG HS_haplotype2 TAGAGGGTCAGTCTGGAATCATGCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG HS_assemblymutate TAGAGGGTCAGTCTGTAAGCATTCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG *************** ** *** ************************************* HS_haplotype1 AGCCCCAAACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA HS_haplotype2 AGCCCCATACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA HS_assemblymutate AGCCCCATACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA ******* **************************************************** HS_haplotype1 GCATTAAAACCCCTTGGTTCATAGCATTTAAGAGTAGTACACAGGTCAAACAAAATTTTC HS_haplotype2 GCATTAAAACCCCTTGGTTCATAGCATTTATGAGTAGTACCCAGGTCAAACAAAATTTTC HS_assemblymutate GCATTAAAACCCCTTGGTTCATAGCATTTAAGAGTAGTACACAGGTCAAACAAAATTTTC ****************************** ********* ******************* HS_haplotype1 CCAAAAATATATGAGTGGGGGGTCAGACATTGCCTTCTGTAGTTAAGTGTAGGTAGCACG HS_haplotype2 CCAAAAATATATGAGTGGGGGGTCAGACATTGCCCTCTGTAGTTAAGTGTAGGTAGCACG HS_assemblymutate CCAAAAATATATGAGTGGGGGGTCAGACATTGCCCACCGTAGTTAAGTGTAGGTAGCACG ********************************** * ********************** HS_haplotype1 TAAGACTAAGTCTCCCTTTCCCTGATTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT HS_haplotype2 TAAGACTAAGTCTCCCTTTCCCTGCGTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT HS_assemblymutate TAAGACTAAGTCTCCCTTTCCCTGATTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT ************************ ********************************** HS_haplotype1 CAATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC HS_haplotype2 CTATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC HS_assemblymutate CTATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC * ********************************************************** HS_haplotype1 CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTTATGGTGTGGC HS_haplotype2 CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTAATGGTGTGGC HS_assemblymutate CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTTATGGTGTGAC ************************************************* ******** * HS_haplotype1 TGATCATTCTATCAAGGACATATGATGTCACTGCCTCATTTGTAACTTATCTCCATAGTC HS_haplotype2 TGATGATTGTCTCAAGGACATATGATGTCACTGCCGCATTTGTAACTTATCTCCATAGTC HS_assemblymutate TGATGATCGTCTCATGGACATATGATGTCACTGCCGCGTTTGTAACTTATCTCCATAGTC **** ** * *** ******************** * ********************** HS_haplotype1 TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCTAGACTCAAGCCCCTTTCTT HS_haplotype2 TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCTAGACTCAAGCCCCTTTCTT HS_assemblymutate TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCGAGACGCAAGCCCCTTTCTT **************************************** **** ************** HS_haplotype1 CTTGTTTGGAGGGGCAAGCCAAGTGTCAGTCCCAGGAGGCATTGGAACAAGTATCCTTAA HS_haplotype2 CTTGTTTGGAGGGGCAAGCCAAGTGTCAGTCCCAGGAGGCATTGGAACAAGTATCCTTAA HS_assemblymutate CTTGTTTGGAGGGGCAAGCCCAGTGTCAGTCCGAGGAGGCATTGGAACAAGTATCCTTAA ******************** *********** *************************** HS_haplotype1 GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA HS_haplotype2 GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA HS_assemblymutate GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA ************************************************************ HS_haplotype1 GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCAGGCTGGGGA HS_haplotype2 GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCTGGGTGGGGA HS_assemblymutate GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCTGGGTGGGGA ************************************************** ** ****** HS_haplotype1 TCACATCTCCTCAGTGATGGTGGTAGGGCACCATCTAGATGGGGGTCGTGGTACACTGCT HS_haplotype2 TCACATCTCCTCAGTGATGGTGGTAGGGCACCATCTAGATGGGGGTCGTGGTACACTGCT HS_assemblymutate TCACATCTCCTCAGTGATGGTGGTAGGGCACCAAGTAGATGGGGGTCGTGGTACACTGCT ********************************* ************************* HS_haplotype1 GGGGCCTTTCTGGAGTTCATAAAGATACTTGGCTCCGGGAGCTACTCCCAAAGACCATCC HS_haplotype2 GGGGGCTTTCTGGAGTTCATAAAGATACTTGGCTCCGGGAGCTACTCCCAAAGACCATCC HS_assemblymutate GGGGTCTTTCTGGAGTTCATAAAGATAATTGGCTCCGGGAGCTACTCCCAAAGACCATCC **** ********************** ******************************** HS_haplotype1 ATAATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGTGGCCCGCCC HS_haplotype2 ATAATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGAGGCCCGCCC HS_assemblymutate ATGATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGTGGCCCGCCC ** *********************************************** ********* HS_haplotype1 AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA HS_haplotype2 AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA HS_assemblymutate AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA ************************************************************ HS_haplotype1 AAAGAAAAGTTGCTCTGTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG HS_haplotype2 AAAGAAAAGTTGCTCTTTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG HS_assemblymutate AAAGAAAAGTTGCTCTGTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG **************** ******************************************* HS_haplotype1 AAGGAAGTCCCATCACTGATCTGGGAAAACAGTCAATGTTTGAGTAGAAGATAAAACTCA HS_haplotype2 AAGGAAATCCCGTCACTGATCTGGGAAAGCAGTCAATGTTTGAGTAGAAGATAAAACTCA HS_assemblymutate AAGGAAATCCCGTCACTGATCTGGGAAAGCAGTCAATGTTTGAGTAGAAGATAAAACTCA ****** **** **************** ******************************* HS_haplotype1 GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTAACAAACAAGGAGGGTA HS_haplotype2 GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTTACAAACAAGGAGGGTA HS_assemblymutate GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTAACAAACAAGGAGGGTA ******************************************* **************** HS_haplotype1 GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGTGATTTTGAAATACATGATCCTGAC HS_haplotype2 GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGGGATGTTGAAATACATGATCCTGAC HS_assemblymutate GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGGGATGTTGAAATACATGATCCTGAC *********************************** *** ******************** HS_haplotype1 ATTATACCAATGCAAGATCATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT HS_haplotype2 ATTATACCAATGCAAGATTATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT HS_assemblymutate ATTATACCAATGCAAGATTATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT ****************** ***************************************** HS_haplotype1 CAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT HS_haplotype2 GAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT HS_assemblymutate GAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT *********************************************************** HS_haplotype1 ACACAAAATTTTTGTTCCAGAGACAGACGAGTTTCAAAACTTGCCCTGGCATGGTTATGC HS_haplotype2 AGACAAAATTTTTGTTCCAGAGACAGACGAGTTTCAAAAATTGCCCTGGCATGGTGATGC HS_assemblymutate ACACAAAATTTTTGCTCGAGAGACAGACGAGTTTCAAAACTTGCCCTGGCATGGTTATGC * ************ ** ********************* *************** **** HS_haplotype1 TCCTGGGCGGCGCCCTCTGTCCTCCCCATCGCTAGCAATGTGCTGTGGGCCTATGGGGTC HS_haplotype2 TCCTGGGCGGCGCCATATGTCCTCCCCATCGCCAGCAATGTGCTGGGGGCCTATGGGGTC HS_assemblymutate TCCTGGGCGGCGCCATATGTCCTCCCCATCGCCAGCAATGTGCTGGGGGCCTATGGGGTC ************** * *************** ************ ************** HS_haplotype1 TCCCTACCCACTTATTCAAAAGGTCAGGTTCTCGCCCAGGCGTGTTTCATCATTTGAAGG HS_haplotype2 TCCCTACCCTCTTATTCAAAAGGTCAGGTTCTCGCCCAGGCGTGTTTCATCATTTGAAGG HS_assemblymutate TCCCTACCCTCTTATTCAAAAGGTCAGGTTCTCGCCCATGCGTGATTCATCATTTGAAGG ********* **************************** ***** *************** HS_haplotype1 CATGGACCAGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAAAATAAAGAGTCTGGC HS_haplotype2 CATGGACCAGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAAAATAAAGAGTCTGGC HS_assemblymutate CATGGACCCGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAACATAAAGAGTCTGGC ******** ************************************ ************** HS_haplotype1 CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTTTAGTGGACA HS_haplotype2 CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTATAGTGGACA HS_assemblymutate CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTTTAGTGGACA ************************************************** ********* HS_haplotype1 TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGACGGCCGAAGG HS_haplotype2 TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGGCAGCCGAAGG HS_assemblymutate TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGGCAGCCGAAGG ************************************************* * ******** HS_haplotype1 CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG HS_haplotype2 CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG HS_assemblymutate CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG ************************************************************ HS_haplotype1 GCAGAGCCCACCCAAAGCATCTGTTCTAAAGCACATCCGGGGCAGCTAATTCTAAAAAAA HS_haplotype2 GCAGAGCCCTCCCAAAGCATCTGTTCTAAAGCACATGCGGGGCGGCTAATTCTAAAAAAA HS_assemblymutate GCAGAGCCCTCCCAAAGCATCTGTTCTAAAGCACATGCGGGGCGGCTAATTCTAAAAAAA ********* ************************** ****** **************** HS_haplotype1 ACTGGCTTGAAGACAGAGCAGCATCTCTCATGATGCCCAATCCCAATGGGTTTGGCTTAC HS_haplotype2 ACTGGCTTGAAGACAGAGCAGCATCTCTGATGATGCCCAATCCCAATGGGTTTGGCTTAC HS_assemblymutate ACTGGCTTGAAGACAGAGCAGCATCTCTCATGATGCCCAATCCCAATGGGTTTGGCTTAC **************************** ******************************* HS_haplotype1 TGGCGAGAGGTATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT HS_haplotype2 TGGCGAGAGGCATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT HS_assemblymutate TGGCGAGAGGCATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT ********** ************************************************* HS_haplotype1 TATGGCGCACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC HS_haplotype2 TATGGCACACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC HS_assemblymutate TATGGCGCACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC ****** ***************************************************** HS_haplotype1 ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAAGATAAACCA HS_haplotype2 ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAGGATAAACCA HS_assemblymutate ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAGGATAAACCA ************************************************** ********* HS_haplotype1 CAAAATTCTTACAGATCTTCAGACTTGCATCACATGTGCCTCATGCCTCACCCAGACATA HS_haplotype2 CAAAATTCTTACAGATCTTCAGACTTGCACCACATGTGCATCATGCCTCACCCAGACATA HS_assemblymutate CAAAATTCTTACAGATCTTCAGACTTGCATCACATGTGCCTCATGCCTCACCCAGACATA ***************************** ********* ******************** HS_haplotype1 TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCATGTATCCTCACT HS_haplotype2 TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCAAGTTTCCTCACT HS_assemblymutate TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCAAGTTTCCTCACT ************************************************ ** ******** HS_haplotype1 GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG HS_haplotype2 GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG HS_assemblymutate GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG ************************************************************ HS_haplotype1 CCTCACGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA HS_haplotype2 CCTCCCGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA HS_assemblymutate CCTCCCGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA **** ******************************************************* HS_haplotype1 AACGACCTCAATGCAGAATTCAGAGCTCCGGTGATGTTGAACGGCTCGAGATCAAGTCCA HS_haplotype2 AACGACCTCAATGCAGAATTCAGAGCTCAGGTGATGTTGAACCGCTCGAGATCAAGTCCG HS_assemblymutate AACGACCTCAATGCAGAATTCAGAGCTCCGGTGATGTTGAACGGCTCGAGATCAAGTCCA **************************** ************* **************** HS_haplotype1 CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA HS_haplotype2 CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA HS_assemblymutate CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA ************************************************************ HS_haplotype1 CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAACGGCCTGT HS_haplotype2 CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAAGGGCCTGT HS_assemblymutate CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAACGGCCTGT **************************************************** ******* HS_haplotype1 CAACCTGGAAATAGCAAAAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA HS_haplotype2 CAACCTGGAAATAGCAACAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA HS_assemblymutate CAACCTGGAAATAGCAAAAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA ***************** ****************************************** HS_haplotype1 GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT HS_haplotype2 GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT HS_assemblymutate GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT ************************************************************ HS_haplotype1 AGAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA HS_haplotype2 AAAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA HS_assemblymutate AAAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA * ********************************************************** HS_haplotype1 ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC HS_haplotype2 ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC HS_assemblymutate ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC ************************************************************ HS_haplotype1 CGGCCTTTTCATCCTGCCTGGGGAAGGTGGGGAGAATATGGGACCCCTCTGCATGGGGAT HS_haplotype2 CGGCCTTTCCATCCTGCCTGGAGAAGGTGGGGAGAATATGGGACCCCTCTGCATGGGGAT HS_assemblymutate CGGCCTTTCCATCCTGCCTGCAGAAGTTGGGGAGAATATGGGACCCCTCTGCTTGGGGAT ******** *********** **** ************************* ******* HS_haplotype1 CGCTGATGTGCAATTTTAATAGAAGGGTTCATGACGAAATGTGTGCCTCAGTGCCGAGTG HS_haplotype2 CGCTGATGTGCAATTTTAATAAAAGGGTTCATGATGAGATGTGTGCCTCAGTGCCGAGTG HS_assemblymutate CGCTGATGTGCAATTTTAATAGAAGGGTTCATGACGAAATGTGTGCCTCAGTGCCGAGTG ********************* ************ ** ********************** HS_haplotype1 AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC HS_haplotype2 AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC HS_assemblymutate AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC ************************************************************ HS_haplotype1 ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGAGCTTGCAGTATAATAATAAGTCTTT HS_haplotype2 ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGAGCTCGCAGTATAATAATAAGTCGTT HS_assemblymutate ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGACCTTGCAGTATACTAATAAGTCTTT *********************************** ** ******** ********* ** HS_haplotype1 GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCAACCTCAGAGCTGC HS_haplotype2 GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCAACCTCAGAGCTGC HS_assemblymutate GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCGACCTCGGAGCTGC ********************************************** ***** ******* HS_haplotype1 TCATCATCCGCGGTTCTACTTCTTAAACTGCGGGGAGGCATTTATAGTTTTTCTGCACCT HS_haplotype2 TCATCATCCGCGGTTCTACTTCTTAAACTGCGGGGAGGCATTTATAGTTTTTCTGCACCT HS_assemblymutate TCATCATCCGCGGTTCTACTTCTTAAACCGCGGGGAGGCATTTATAGTTTTTCTGCACCT **************************** ******************************* HS_haplotype1 TCAATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAAGCAAAGTCAAGACAATAGAAA HS_haplotype2 TCAATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAAGCAAAGTCAAGACAATAGAAA HS_assemblymutate TCCATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAGGCAAAGTCAAGACAATGGAAA ** *********************************** **************** **** HS_haplotype1 GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGTGGATCTT HS_haplotype2 GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGTGGATCTT HS_assemblymutate GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGGGAATCTT **************************************************** * ***** HS_haplotype1 CTGTGGAGATAAGTGTGTTTCAAAAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT HS_haplotype2 CTGTGGAGATAAGTGTGTTTCAAAAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT HS_assemblymutate CTGTGGAGATAAGTGTGTTTCAAGAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT *********************** ************************************ HS_haplotype1 TGACCTACCTTCTCTCAGTAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT HS_haplotype2 TGACCGGCCTTCTCTCAATAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT HS_assemblymutate TCACCTACCTTCTGTCAGTAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT * *** ****** *** ****************************************** HS_haplotype1 GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGAGATCACTAGGCATCA HS_haplotype2 GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGGGATCACTAGGCATCA HS_assemblymutate GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGGGATCACTAGGCATCA ******************************************** *************** HS_haplotype1 TGTAGAGGTAGTCAGGACTCACAGAGCTTCTACATGGTGAGAAGTGTCTGAAGAGCTCTG HS_haplotype2 TGTGGAGGTAGTCACGACTGACAGAGCATCTACATGGTGAGAAGTGTCTGAAGAGCTCTG HS_assemblymutate TGTAGAGGTAGTCAGGACTCACAGAGCTTCTACATGGTGAGAAGTGTCTGAAGAGCTCTG *** ********** **** ******* ******************************** HS_haplotype1 GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTCCAACCTCTCCCCCCCCAAAGGAGACTC HS_haplotype2 GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTACAACATCTCCCCCCCCAATGGAGACTC HS_assemblymutate GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTACAACATCTCCCCCCCCAATGGAGACTC ******************************** **** ************* ******** HS_haplotype1 TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGCCGAGTCAGGAGGTCTTG HS_haplotype2 TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGTCGAGTCAGGAGGTCTTG HS_assemblymutate TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGCCGAGTCAGGAGGTCTTG ****************************************** ***************** HS_haplotype1 ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCCTCCTGTAGGAACACATTCCA HS_haplotype2 ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCTTCCTGTAGGAACACATTCCA HS_assemblymutate ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCTTCCTGTACGAACTGATTCCA *************************************** ******* **** ****** HS_haplotype1 GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT HS_haplotype2 GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT HS_assemblymutate GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT ************************************************************ HS_haplotype1 CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC HS_haplotype2 CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC HS_assemblymutate CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC ************************************************************ HS_haplotype1 TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC HS_haplotype2 TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC HS_assemblymutate TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC ************************************************************ HS_haplotype1 AAACACAAATTGATAAACTTCCCATTTAATATTAACTGCAGAACTGGGGATGCATCTATC HS_haplotype2 AGACAGAAATTGATAAACTTCCCATTTAATATTAACTGCACAACTGGGGATGCATCTATC HS_assemblymutate AGACAGAAATTGATAAACTTCCCATTTAATATTAACTGCACAACTGGGGGTGCATCAATC * *** ********************************** ******** ****** *** HS_haplotype1 CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC HS_haplotype2 CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC HS_assemblymutate CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC ************************************************************ HS_haplotype1 TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAACTCTCCTGCTTAAAACTTGTTTCCT HS_haplotype2 TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAAGTCTCCTGCTTAAAACTTGTTTCCT HS_assemblymutate TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAAGTCTCCTGCTTAAAACTTGTTTCCT *********************************** ************************ HS_haplotype1 TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT HS_haplotype2 TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT HS_assemblymutate TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT ************************************************************ HS_haplotype1 CTGGCCTCCCAACAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTATTT HS_haplotype2 CTGGCCTCCCAAAAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTTTTT HS_assemblymutate CTGGCCTCCCAAAAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTTTTT ************ ******************************************* *** HS_haplotype1 AGGCGATTTTGGGATACCAAAATGGGGAGAATGTACAAATCTACTAAATTGTTTTTAATT HS_haplotype2 AGGCGATTTTGGGAGACCAAAATGGGGAGAATGTACAAATCTACTAAATTGTTTTTAATT HS_assemblymutate ATGCGATTTTGGGATACCAAAATTGGGAGAATGTACAAATCTACTAAATTGTGTTTAATT * ************ ******** **************************** ******* HS_haplotype1 AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCCGGTGAGGCAAGGCAAATAGGCCAG HS_haplotype2 AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCAGGTGAGGCAAGGCAAATAGGCCAG HS_assemblymutate AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCAGGTGAGGCAAGGCAAATAGGCCAG *********************************** ************************ HS_haplotype1 CCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG HS_haplotype2 TCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG HS_assemblymutate TCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG *********************************************************** HS_haplotype1 ACTGAAGTCTTAACTTTGCAGTGGAATTCTCTGAAAAGATGTTTCTCAAGAATTGCTCAG HS_haplotype2 ACTGAATTCATAACTTTGCAGTGGAATTCTCAGAAAAGATGTTTCTCAAGAATTGCTGAG HS_assemblymutate ACTGAATTCATAACTTTGCAGTGGAATTCTCAGAAAAGATGTTTCTCAAGAATTGCTGAG ****** ** ********************* ************************* ** HS_haplotype1 GTTGGGCAAAAATTGCTTTTGCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG HS_haplotype2 GTTGGGCAAAAATTGCTTTTTCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG HS_assemblymutate GTTGGGCAAAAATTGCTTTTGCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG ******************** *************************************** HS_haplotype1 TCAATCTGTTATGATCTCATGTGTTCAATATTAAATAGAAAAGGTACTGTTTTGGCTTCC HS_haplotype2 TCAATCTGTTATGATCTCATGTGTTCAACATTAAATAGAAAAGGTACTGTTTTGGCTTCA HS_assemblymutate TCAATCTGTTATGATCTCATGTGTTCAACATTAAATAGAAAAGGTACTGTTTTGGCTTCA **************************** ****************************** HS_haplotype1 GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGCACAGAAGCCGAGGGAATTAGC HS_haplotype2 GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGGACAGAAGCCGAGGGAATTAGC HS_assemblymutate GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGGACAGAAGCCGAGGGAATTAGC ************************************** ********************* HS_haplotype1 CTTGTATGTTCAGCCTGAATGTTGACTCTGCATGCTTCTCCTCAGCCCTTTCTTCAGTCT HS_haplotype2 CTTGTATGTTCAGCCTGAACGTTGACTCTGGATGCTTCTCCTCAGCCCTTTCTTCAGTCT HS_assemblymutate CTTGTATGTTCAGCCTGAACGTTGACTCTGGATGCTTCTCCTCAGCCCTTTCTTCAGTCT ******************* ********** ***************************** HS_haplotype1 CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC HS_haplotype2 CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC HS_assemblymutate CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC ************************************************************ HS_haplotype1 TGCTTTCCTCAGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCAAGG HS_haplotype2 TGCTTTCCTCCGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCAAGG HS_assemblymutate TGCTTTCCTCCGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCCAGG ********** ********************************************* *** HS_haplotype1 GAGTCAAGATCATCACTCCTGGCATGCCATACAAAAAAACAGCATCAAGATCTTGCAAGT HS_haplotype2 GAGTCAAGATCATCACTCCAGGCATGCCATACAAAAAAACAGCATCAAGATCTTGCAAGT HS_assemblymutate GAGTCAACATCATCACTCCTGGCATGCCAAACAAAAAAACAGCATCAAGATCTTGCAAGA ******* *********** ********* ***************************** HS_haplotype1 TTATGTCCATATTTGTGACTTGAAAGTGCTGCTGGCTCTAGTGGAAGCCAGCAAGTATAT HS_haplotype2 TTATGTCCCTATTTGTGACTTGAAAGTGCTCCTGGCTCTAGTGTAAGCCAGCAAGTATAT HS_assemblymutate TTTTGTCCCTATTTGTGACTTGAAAGTGCTCCTGACTCTAGTGTAAGTCAGCAAGTATAT ** ***** ********************* *** ******** *** ************ HS_haplotype1 TACTTCAGAGTCATTACAAGCAAGGTAGGAGTGCCACTGCTCCTGATTGCCCATCACTGC HS_haplotype2 TACTTCTGAGTCATTACAAGCAAGGGAGGAGTGCCACTACTCCTGATTGCCCATCACTGC HS_assemblymutate TACTTCAGAGTCATTACAAGCAAGGTAGGAGTGCCACTGCTCCTGATTGCCCATCACTGC ****** ****************** ************ ********************* HS_haplotype1 ACTGTTTCTATGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA HS_haplotype2 ACTGTTTCTAGGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA HS_assemblymutate ACTGTTTCTAGGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA ********** ************************************************* HS_haplotype1 GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGATAGAGGACACGTAATCTGGACGGT HS_haplotype2 GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGATAGAGGACACGTAATCTGGATGGT HS_assemblymutate GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGACAGAGGACACTTAATCTGGACGGT ************************************ ********* ********* *** HS_haplotype1 GGAGGGGTTTTTTTCTTTTTGTTGCTCACGTGGTATAAATTTTACTTAGCCGGGCTCCTG HS_haplotype2 GGAGGGGTTTTTTTCATTTTGTAGCTCACGTGGTATAAATTATACTTAGCCGGGCTCCTG HS_assemblymutate GGAGGGGTTTTTTTCATTTTGTAGCTCACGTGGTATAAATTATACTTAGCCGGGCTCCTG *************** ****** ****************** ****************** HS_haplotype1 ACAGGATTACCCAAATTCACCACCAGATTGCACTATCTATCATCTGAGGTTGCGCAGTTT HS_haplotype2 ACAGGATTACCCAAATTCACCACCAGACTGCACTATCTATCATCTGAGGTTGCGCAGTTT HS_assemblymutate ACAGGATTACCCAAATTCACCACCAGATTGCACTACCTCTCATCTGAGGTTGCGCAGTTT *************************** ******* ** ********************* HS_haplotype1 GTGCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC HS_haplotype2 GTTCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC HS_assemblymutate GTTCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC ** ********************************************************* HS_haplotype1 TAGGAGTTTGGGGCTTCTTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA HS_haplotype2 TAGGAGTTTGGGGCTTATTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA HS_assemblymutate TAGGAGTTTGGGGCTTCTTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA **************** ******************************************* HS_haplotype1 CTGACATTTTGAGGCTGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA HS_haplotype2 CTGACATTTTGAGGCAGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA HS_assemblymutate CTGAGATTTTGATGCAGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA **** ******* ** ******************************************** HS_haplotype1 GAGAATGACCACCCACAACTCAAATTAGCCCTCATTTTAGTAGCTACTTAAAATTAATTT HS_haplotype2 GAGAATGACCACCCACAAATCAAATTAGCCCTCATTTTAGTAGCCACTTAAAATTAATTT HS_assemblymutate GAGAATGACCACCCACAACTCAAATTAGCCCTCATTTTAGTAGCTACTTAAAATTAATTT ****************** ************************* *************** HS_haplotype1 TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAATAG HS_haplotype2 TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAAAAG HS_assemblymutate TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAAAAG ********************************************************* ** HS_haplotype1 GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT HS_haplotype2 GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT HS_assemblymutate GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT ************************************************************ HS_haplotype1 TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTTATCAG HS_haplotype2 TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTTATCAG HS_assemblymutate TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTCAACAG ****************************************************** * *** HS_haplotype1 CGTTCTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTTAATTTTTCTTG HS_haplotype2 CGTTTTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTCAATTTTTCTTG HS_assemblymutate CGTTCTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTTAATTTTTCTTG **** ******************************************* *********** HS_haplotype1 AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG HS_haplotype2 AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG HS_assemblymutate AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG ************************************************************ HS_haplotype1 GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC HS_haplotype2 GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC HS_assemblymutate GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC ************************************************************ HS_haplotype1 AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTGTGCATGTTT HS_haplotype2 AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTCTGCATGTTT HS_assemblymutate AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTCTGCATGTTT ************************************************** ********* HS_haplotype1 GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAAAAATCTCACTCTACAATGATGGCT HS_haplotype2 GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAACAATCTCACTCTACAATGATGGCT HS_assemblymutate GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAAAAATCTCACTCTACAATGATGGCT ************************************ *********************** HS_haplotype1 CTGTCTCTGTGGGATATACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA HS_haplotype2 CTGTCTCTGTGGGATCTACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA HS_assemblymutate CTGTCTCTGTGGGATCTACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA *************** ******************************************** HS_haplotype1 ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG HS_haplotype2 ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG HS_assemblymutate ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG ************************************************************ HS_haplotype1 AGTTCATTAACCAAACCAGGCTGAAGTTATCCAGTCTGGGAGTGAGGCATTCAACAGCAA HS_haplotype2 AGTTCATTAACCAAACCAGGCTGCAGTTATCCAGTCTGGGAGTGAGGCATTCAACAGCAA HS_assemblymutate AGTTCATTAACCAAACCAGGCTGCAGTTATCCAGTCAGGGAGTGAGGCCTTCAACCGCAT *********************** ************ *********** ****** *** HS_haplotype1 GATGCATTGCTCCCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATGGTACTC HS_haplotype2 GATGCATTGGTCGCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATCGTACTC HS_assemblymutate GATGCATTGCTCCCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATGGTACTC ********* ** **************************************** ****** HS_haplotype1 TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGAAACGCTCCCGGGGCTG HS_haplotype2 TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGTAACGCTCCCAGGGCTG HS_assemblymutate TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGTAACGCTCCCAGGGCTG ******************************************* ********* ****** HS_haplotype1 CCAGGTCTCTCTTGCTCGTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGAGACTGGTG HS_haplotype2 CCAGGTCGCTCTTGCTCCTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGACACTGGTG HS_assemblymutate CCAGGTCTCTCTTGCTCGTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGAGACTGGTA ******* ********* ********************************** ****** HS_haplotype1 CTGAGCCTCCATCTTGGCGATCTTAGTCCGGGCTCAGGAGTCAGATGGTGGCTAACCTCA HS_haplotype2 CTGATCCTCCATCTTCGCGATCTTATTCCGGGCTCAGGAGTCAGATGGTGGCTAACCTCA HS_assemblymutate CTGAACCTCCATCTTCGCGATCTTATTCCGGGCTCAGGAGTCAGATGTTGCGTAACCTCA **** ********** ********* ********************* ** ******** HS_haplotype1 TTTCCCCCATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA HS_haplotype2 TTTCCCCCATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA HS_assemblymutate TTTCCCCAATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA ******* **************************************************** HS_haplotype1 CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAAGCACTTTGTTTCTTCAAAGATT HS_haplotype2 CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAAGCACTTTGTTTCTTCAAAGATT HS_assemblymutate CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAATCGCTTTGTTTCTTCAAAGATT ************************************** * ******************* HS_haplotype1 CGGTCAGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCCAGTCCCCT HS_haplotype2 CGGTCAGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCGAGTCCCCT HS_assemblymutate CGGTCCGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCCAGTCCCCT ***** ********************************************* ******** HS_haplotype1 CCATAAAATGACATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT HS_haplotype2 CCATAAAATGAAATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT HS_assemblymutate CCATAAAATGAAATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT *********** ************************************************ HS_haplotype1 TCAACGGTCTCATTGTCTGCCACTGTTCACATATGTGGTCTCAGCCTTTCGTAGTCCCAA HS_haplotype2 TCAACGGTCTCATTGTCTGCCACTGTTCACATCTGTGGTCTCAGCCTTTCGTAGTCCCAA HS_assemblymutate TCAACGGTCTCATTGTCTGCCACTGTTCACATATGTGGTCTCAGCCTTTCGTAGTCCCAA ******************************** *************************** HS_haplotype1 AATACTTATTTAAACAGGAATTGGGCAACCCTACGCAACAACACCTGTGCAGCTTCAGAT HS_haplotype2 AATTCTTATTTAAACAGGAACTGGGCAACCCTACGCAACAACACCTCTGCAGCTTCAGAT HS_assemblymutate AATTCTTATTTAAACAGGAACTGGGCAACCCTACGCAACAACACCTCTGCAGCTTCAGAT *** **************** ************************* ************* HS_haplotype1 TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAAGAGACGATG HS_haplotype2 TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAGGAGACGATG HS_assemblymutate TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAAGAGACGATG ************************************************** ********* HS_haplotype1 GCTCAGGTCAAATAAACAAATATACACGATTGCTCCACTCCTGCAGTCTCGGCCCTTTGC HS_haplotype2 GCTCAGGTCAAATAAACAAATATACACAATTGCTCCACTCCTGCAGTCTCAGCCCTTTGC HS_assemblymutate GCTCAGGTCAAATAAACAAATATACACAATTGCTCCACTCCTGCAGTCTCAGCCCTTTGC *************************** ********************** ********* HS_haplotype1 CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCACCTGGGGTTCTGTTACATA HS_haplotype2 CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCAGCTGGGGTTCTGTTACATA HS_assemblymutate CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCACCTGGGGTTCTGTTACATA ***************************************** ****************** HS_haplotype1 GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC HS_haplotype2 GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC HS_assemblymutate GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC ************************************************************ HS_haplotype1 ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA HS_haplotype2 ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA HS_assemblymutate ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA ************************************************************ HS_haplotype1 TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG HS_haplotype2 TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG HS_assemblymutate TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG ************************************************************ HS_haplotype1 ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG HS_haplotype2 ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG HS_assemblymutate ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG ************************************************************ HS_haplotype1 ATCCACCCACGGACCTCTGGTGATCCATGTGGTCTAAGGCATATTCTATGGGTACATAGT HS_haplotype2 ATCCACCCACGGACCTCTGGTGAACCATGTGGTCTAAGGCATAGTCTATGGGTACATAGT HS_assemblymutate ATCCACCCACGGACCTCTGGTGAACCATGTGGTCTAAGGCATAGTCTATGGGTACATAGT *********************** ******************* **************** HS_haplotype1 GAAATTCCAGCACTTCAGGTGGTGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC HS_haplotype2 GAAGTTCCAGCACTTCAGGTGGTGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC HS_assemblymutate GAAGTTCCAGCACTTCATGTGGAGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC *** ************* **** ************************************* HS_haplotype1 TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT HS_haplotype2 TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT HS_assemblymutate TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT ************************************************************ HS_haplotype1 ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA HS_haplotype2 ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA HS_assemblymutate ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA ************************************************************ HS_haplotype1 GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGAAGATCTCGGCTATTTGAA HS_haplotype2 GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGGAGATCTCGGCTATTTGAA HS_assemblymutate GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGGAGATCTCGGCTATTTGAA ***************************************** ****************** HS_haplotype1 CTATATTGGGATGTCATTCTTTAGAACAGGTCTACTCCCTATTTTTGCATTGTCTAGACA HS_haplotype2 CTATATTGGGATGTCATTCTTTAGAACAGGTCTAGTCCCTATTTTTGCATTGTCTAGTCA HS_assemblymutate CTATATTGGGATGTCATTCTTTAGAACAGGTCTACTCCCTATTTTTGCATTGTCTAGACA ********************************** ********************** ** HS_haplotype1 CCATTCTGGACCATGCTCCGAACGTGTGAAGGTTGCCCGTCTTCATAATTTCTGTTTACG HS_haplotype2 CCATTCTGGACCATGATCCGAACGTGTGAAGGTTGCCCTTCTTCATAATTTCTGTTTACG HS_assemblymutate CCATTCTGGACCATGATCCGAACGTGTGAAGGTTGCCCTTCTTCATAATTTCTGTTTACG *************** ********************** ********************* HS_haplotype1 GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT HS_haplotype2 GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT HS_assemblymutate GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT ************************************************************ HS_haplotype1 GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT HS_haplotype2 GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT HS_assemblymutate GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT ************************************************************ HS_haplotype1 AGGACGAGCAGGAGCAAGCCTCCTCAGGCTTGCGTCTATAGTATATGTCGCAGAGAGAGG HS_haplotype2 AGGACGAGCAGGAACAAGCCTCCTCAGGCTTGCTTCTATAGTATATGTCGCAGAGAGAGG HS_assemblymutate AGGACGAGCAGGAGCAAGCCTCCTCAGGCTTGCGTCTATAGTATATGTCGCAGAGAGAGG ************* ******************* ************************** HS_haplotype1 GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC HS_haplotype2 GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC HS_assemblymutate GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC ************************************************************ HS_haplotype1 TCTGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT HS_haplotype2 TCAGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT HS_assemblymutate TCTGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT ** ********************************************************* HS_haplotype1 GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAACATTCCACCTCGTGATAAC HS_haplotype2 GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAATATTCCACCTCGTGATAAC HS_assemblymutate GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAATATTCCACCTCGTGATAAC ***************************************** ****************** HS_haplotype1 TTCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATGCTGTAATCTTGTTA HS_haplotype2 TCCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATACTGTAATCTTGTTA HS_assemblymutate TTCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATGCTGTAATCTTGTTA * ******************************************* ************** HS_haplotype1 GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGTGGAGCGAAACCT HS_haplotype2 GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGAGGAGCGAATCCT HS_assemblymutate GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGAGGAGCGAATCCT *********************************************** ******** *** HS_haplotype1 TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGTGGATTCACTAGCCCCCTGCTCTT HS_haplotype2 TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGAGGATTCACTCGCCCCCTGCTCTT HS_assemblymutate TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGTGGATTCACTAGCCCCCTGCTCTT ************************************ ********* ************* HS_haplotype1 GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTGAATAACAGAGCCATACCGCAAA HS_haplotype2 GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTGAATAACAGAGCCATACCGCAAA HS_assemblymutate GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTAAATAACAGAACCATACCGCAAA ************************************* ********* ************ HS_haplotype1 TCTCTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGATGAACAAAAAA HS_haplotype2 TCTTTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGGTGAACAAAAAA HS_assemblymutate TCTCTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGATGAACAAAAAA *** ******************************************** *********** HS_haplotype1 AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT HS_haplotype2 AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT HS_assemblymutate AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT ************************************************************ HS_haplotype1 GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG HS_haplotype2 GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG HS_assemblymutate GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG ************************************************************ HS_haplotype1 GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA HS_haplotype2 GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA HS_assemblymutate GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA ************************************************************ HS_haplotype1 ACCCTGCAAGCTAGAGTGTGGCTCTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT HS_haplotype2 ACCCTGCCAGCTAGAGTGAGGCTCTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT HS_assemblymutate ACCCTGCTAGCCAGAGTGTGGCACTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT ******* *** ****** *** ************************************* HS_haplotype1 TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGAAAACTAAATGCTTTCTC HS_haplotype2 TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGATAACTAAATGCTTTCTC HS_assemblymutate TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGATAACTAAATGCTTTCTC ******************************************* **************** HS_haplotype1 CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT HS_haplotype2 CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT HS_assemblymutate CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT ************************************************************ HS_haplotype1 AGACATGTCAGGTAGTGAGGCTAAAAAATAAATAGTGTAGGATTATTAAATGACTCCAGA HS_haplotype2 AGACATGTCAGGTAGTGAGGCTAAAAAATAAATAGTGTAGGATTATTAAATGACTCCAGA HS_assemblymutate AGACATGTCAGGTAGTGAGGCTAAAAAATAAACAGTATAGGATTATTAAATGACTCCAGA ******************************** *** *********************** HS_haplotype1 AGACCTCAAAGTCACCCTTCCACTCCATGTAGATTTCTCATGGTGGCTAAGGTAAGCCCA HS_haplotype2 AGACCTCAAAGTCACCTTTCCACTCCATGTAGATTTCTCATGGTGGCCAAGGTAACCCCA HS_assemblymutate AGACCTCAAAGTCACCCTTCCACTCCATGTAGATTTCTCATGGTGGCTAAGGTTAGCCCA **************** ****************************** ***** * **** HS_haplotype1 GAGGGCACCACCTCCGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA HS_haplotype2 GAGGGCACCACCTCCGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA HS_assemblymutate GAGGGCCCCACCTCAGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA ****** ******* ********************************************* HS_haplotype1 TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTGAGCCTGGACAA HS_haplotype2 TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTGAGCCTGGCCAA HS_assemblymutate TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTCAGCCTGGACAA ************************************************ ******* *** HS_haplotype1 GACCCTCTACTCAGCCACGTGGAAATTAAGAGCCAGTGCAGCCCAACTCTATAAGAGGAT HS_haplotype2 GACCCTCTACTCAGCCACGTGGAAATTAAGAGCCAGTGGAGCCCAACTCTATAAGAGGAT HS_assemblymutate AACCCTCTACTCAGCCCCGTGGAAATTAAGAGCCAGTGGAGCCCAACTCTATAAGAGGAT *************** ********************* ********************* HS_haplotype1 TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC HS_haplotype2 TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC HS_assemblymutate TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC ************************************************************ HS_haplotype1 TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC HS_haplotype2 TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC HS_assemblymutate TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC ************************************************************ HS_haplotype1 CAACAGGTGAAGCCTCTTCCCCAGCTTCGGCCTAAATTGTTGGTACAACAGATTCCTCCG HS_haplotype2 CAACGGGTGAAGCCTCTTCCCCAGCTTCGGCCTCAATTGTTGGTACAACAGATTCCTCCG HS_assemblymutate CAACAGGTGAAGCCTCTTCCCCAGCTTCGGCCTAAATTGTTGGTACAACAGATTCCTCCG **** **************************** ************************** HS_haplotype1 CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACGATCT HS_haplotype2 CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACAATCT HS_assemblymutate CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACAATCT ******************************************************* **** HS_haplotype1 AATTCCTGTAGCCCCCCTTGAGGGGTAACATGGTGACTTCTGACAGCTCACACAAACTCC HS_haplotype2 AATTCCTGTAGCCCCCCTTGAGGGGTAACATGGTGACTTCTGATAGCTCACACAAACTAC HS_assemblymutate AATTCCTGTGGCCCCCCATTAGGGGTAACATGGTGACTTCTGACAGCTCACACAAACTCC ********* ******* * *********************** ************** * HS_haplotype1 AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGGGAATAGTATCTCAA HS_haplotype2 AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGTGAATAGTATCTCAA HS_assemblymutate AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGTGAATAGTATCTCAA ********************************************* ************** HS_haplotype1 GCCACGACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT HS_haplotype2 GCCACCACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT HS_assemblymutate GCCACGACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT ***** ****************************************************** HS_haplotype1 TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG HS_haplotype2 TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG HS_assemblymutate TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG ************************************************************ HS_haplotype1 GGCTGGTACGAAAGAGTCAAATTCTTCTTTTGGCCGCCGCACCTAGAATCAGCAAAGTGT HS_haplotype2 GGCTGGTACGAAAGAGTCAAATTCTTATCTTGGCCGCCGCACCTAGAATCAGCAAAGTGT HS_assemblymutate GGCTGGTACGAAAGAGTCAAATTCTTCTTTTGGCCGCCGCACCTAGAATCAGCAAAGTGT ************************** * ******************************* HS_haplotype1 ACAGTGAGCCCGTTATTGTTTAGCACAGAGATACAATATACCAATTTCTGCATTTTATTA HS_haplotype2 ACAGTGAGCCCATTATTGTTTAGCACAGAGATACAATATACCCATTTCTGCATTTTATTA HS_assemblymutate ACAGTGAGCCCATTATTGTTTAGCACAGAGATACAATATACCCATTTCTGCATTTTATTA *********** ****************************** ***************** HS_haplotype1 CAGCTCATACCCACTTTAGTATGGAAACTCCTAGGAGTTTCAACTCTCATAGTACTCATA HS_haplotype2 CAGCACATACCCACTTTAGTATGGAAACTCCTAGGAGTTTCAACTTTCATAGTACTCATA HS_assemblymutate CAGCTCATACCTACTTTAGTATCGAAACTCCTAGGAGTTTCAACTTTCATAGTACTCATA **** ****** ********** ********************** ************** HS_haplotype1 GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACCCTTGCAACTCGGAACATGATAACC HS_haplotype2 GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACTCTTGAAACTCGGAACATGATAACC HS_assemblymutate GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACTCTTGAAACTCGGAACATGATAACC *********************************** **** ******************* HS_haplotype1 TGAAAAGGATCCGATGAGGAGGGAGCACCCAGCTAGAAATAATAGATGCATGGGGTGCCT HS_haplotype2 TGAAAAGGATCCGATGGGGAGGGAGCTCCCAGCTATAAATAATAGATGCATGGGGTGCCT HS_assemblymutate TGAAAAGGATCCGATGAGGAGGGAGCACCCAGCTAGAAATAATAGATGCATGGGGTGCCT **************** ********* ******** ************************ HS_haplotype1 TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA HS_haplotype2 TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA HS_assemblymutate TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA ************************************************************ HS_haplotype1 CCAGCTGGATTTTTCCGGGTCTTCTTGGACCAGCCCCAAATACATTGGATTTTAATAAAT HS_haplotype2 CCAGCTGGATTTTTCCGGGTCTTCTTCGACCAGCCCCAAATACATTGGATTTTAATAAAT HS_assemblymutate CCAGCTGGATTTTTCCGGGTCTTCTTGGACCAGCCCCAAATACATTGGATTTTAATAAAT ************************** ********************************* HS_haplotype1 GTCATGCCCAGCAGAGTTTATTCTCAGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT HS_haplotype2 GTCATGTCCAGCAGAGTTTATTCTCCGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT HS_assemblymutate GTCATGTCCAGCAGAGTTTATTCTCCGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT ****** ****************** ********************************** HS_haplotype1 ATATCTGTTTTTGATTGCATCGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT HS_haplotype2 ATATCTGTTTTTGATTGCATGGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT HS_assemblymutate ATATCTGTTTTTGATTGCATCGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT ******************** *************************************** HS_haplotype1 TCTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGTGGATGGTGTTTACCCAAA HS_haplotype2 TTTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGCGGATGGTGTTTACCCAAA HS_assemblymutate TTTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGCGGATGGTGTTTACCCAAA * *************************************** ****************** HS_haplotype1 AGAAAATAATGTACATGCAAACTTTAAAACACCAGATGTGAGCCCCCTTTGTTGATTCAC HS_haplotype2 AGAAAATAATGTACATGCAAACTTTAAAACACCACATGTGAGCCCCCTTTGTTGATTCAC HS_assemblymutate AGAAAATAATGTACATGCAAACTTTAAAACACCAGATGTGAGCCCCCTTTGTTGATTCAC ********************************** ************************* HS_haplotype1 CTCAAATTAATATCAGAGAGTGGGAGCACTCCCGGATTTTTACCTAATTATGTTGCTTAC HS_haplotype2 CTCAAATTAACCTCAGAGAGTGGCAGCACTCCAGGATTTTTACCTATTTATGTTGCTTAC HS_assemblymutate CTCAAATTAACCTCAGAGAGTGGCAGCACTCCAGGATTTTTACCTATTTATGTTGCTTAC ********** *********** ******** ************* ************* HS_haplotype1 AGGGCAAAGAATTAATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAAGCATC HS_haplotype2 AGGGCAAAGAATATATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAAGCAGC HS_assemblymutate AGGGCAAAGAATTAATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAACCATC ************ ***************************************** ** * HS_haplotype1 TGACTGTTTAATCTTGTGAAATGTAGTCCAGCAAAAGGGCTCAAATACCATGCATACTCG HS_haplotype2 TGGCTGTTTAATCTAGTGAAATGTAGTCCAGCAGAAGGGCTCAAATACCATGCATACTCG HS_assemblymutate TGGCTGTTTAATCTAGTGAAATGTAGTCCAGCAGAAGGGCTCAAATACCATGCATACTCG ** *********** ****************** ************************** HS_haplotype1 TCATAAGCAGCAGCTGGGACATAGCCTTAATTATAGTCACCCCAGCTAAATTAGAAGAAT HS_haplotype2 TCATAAGCAGCAGCTGGGACATAGCCTTCATTATAGTCACCCCAGCTAAATTAGAAGAAT HS_assemblymutate TCATAAGCAGGACCTGGGACATGGCCTTAATTATAGTCACCCCAACTAAATTAGTAGAAT ********** * ********* ***** *************** ********* ***** HS_haplotype1 TAGGAGTCAGATGGTTGACTCTTCAATAATTTATTTCCTGAATATACGTGAGGTTGAGCT HS_haplotype2 TAGGAGTCAGATGGTTGACTCTTCAATACTTTATTTCCTGAATATACGTGAGGTTGAGCT HS_assemblymutate TAGGAGTCCGCTGGTTCACTCTTCAATACTTTATTTCCTTAATATACGTGAGCTTGAGCT ******** * ***** *********** ********** ************ ******* HS_haplotype1 GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA HS_haplotype2 GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA HS_assemblymutate GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA ************************************************************ HS_haplotype1 TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCTTTTGCTGCTATGGCCAG HS_haplotype2 TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCCTCTGCTGCTATGGCCAG HS_assemblymutate TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCCTCTGCTGCTATGGCCAG ****************************************** * *************** HS_haplotype1 AGCAAAATCTACTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTGGA HS_haplotype2 AGCAAAATCTCCTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTAGA HS_assemblymutate AGCAAAATCTACTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTGGA ********** ********************************************** ** HS_haplotype1 GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA HS_haplotype2 GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA HS_assemblymutate GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA ************************************************************ HS_haplotype1 TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT HS_haplotype2 TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT HS_assemblymutate TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT ************************************************************ HS_haplotype1 TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGATTTAAAACAA HS_haplotype2 TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGATTTAAATCAA HS_assemblymutate TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGAATTATATCAA ************************************************** *** * *** HS_haplotype1 AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG HS_haplotype2 AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG HS_assemblymutate AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG ************************************************************ HS_haplotype1 TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA HS_haplotype2 TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA HS_assemblymutate TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA ************************************************************ HS_haplotype1 TTGGGTACCCAAGTAAATGTTCATTTGTTCTGCGTCCTGGCCCCATTAGTTTAAGTAGCT HS_haplotype2 GTGGGTACCCAAGTAAATGTTCATTTGTTCTACGTCCTGGCCCCATTAGTTTAAGTAGCT HS_assemblymutate TTGGGTACCCAAGTAAATGTTCATTTGTTCTGCGTCCTGGCCCCATTAGTTTAAGTAGCT ****************************** **************************** HS_haplotype1 GGAAGGGCCTGCACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA HS_haplotype2 GGAAGGGCCTGAACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA HS_assemblymutate GGAAGGGCCTGAACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA *********** ************************************************ HS_haplotype1 TTGTCTCCAGGCCCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA HS_haplotype2 TTGTCTCCAGGCTCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA HS_assemblymutate TTGTCTCCAGGCCCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA ************ *********************************************** HS_haplotype1 CACAAGCAGTGGCTGTCTGTGGTCTTAGACCCCGGGGTTTTCATGTAGGTCTCTTGTGCC HS_haplotype2 CACAAGCAGTGGCTGTCTGTGGTCTAAGACCCCGGGGTTATCAAGTAGGTCTCTTGTGCC HS_assemblymutate CACAAGCAGTGGCTGTCTGTGGTCTAAGACCCCGGGGTTATCAAGTAGGTCTCTTGTGCC ************************* ************* *** **************** HS_haplotype1 CTGAACGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC HS_haplotype2 CTGAAGGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC HS_assemblymutate CTGAACGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC ***** ****************************************************** HS_haplotype1 TGGGGCTTACCGAAGGGAAGAGATTTCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA HS_haplotype2 TGGGGGTAACAGAAGGGAAGAGATTCCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA HS_assemblymutate TGGGGGTAACAGAAGGGAAGAGATTCCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA ***** * ** ************** ********************************** HS_haplotype1 CGGTGGCATTAGAGAATGGGGACTAGTCTGGACGAGTAGTGCTGAGTGAACCACCCCAGC HS_haplotype2 CGGTGGCATTAGAGAATGGGGACTACTCTGGACGAGTAGTGCTGAGTGAACCAGCCCAGC HS_assemblymutate CGGTGGCATTAGAGAATGGGGACTAGTCTGGACGAGTAGTGCTGAGTGAACCACCCCAGC ************************* *************************** ****** HS_haplotype1 AGGGATAGAGACATATCTGGTCTGGGCGGAACTTGGGTTCCACAACCCCGTCTGGGCTGA HS_haplotype2 AGGGATAGAGACATATCTGGTCTGGGAGGAACTTGGGTTCCACAACCCCGTCTGGGCTGA HS_assemblymutate AGGGATAGAGACATATCTGGTCTGGGAGGAACTTGGGTTCCACAACCCCGTCTGGGGTGG ************************** ***************************** ** HS_haplotype1 GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCGTTTTTGACC HS_haplotype2 GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCATTTTTGACC HS_assemblymutate GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCGTTTTTGACC ************************************************** ********* HS_haplotype1 TTACTATCTTCCAAGTGCATTAGTATTGGATCTACTAAGAACATTTACTAGTTCCAGCCC HS_haplotype2 TTACTATCTTCCAAGTGCATTAGTATTGGATCTGCTAAGAACATTTACTAGTTCCAGCCC HS_assemblymutate TTACTATCTTCCAAGTGCATTAGTATTGGATCTGCTAAGAACATTTACTAGTTCCAGCCC ********************************* ************************** HS_haplotype1 ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA HS_haplotype2 ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA HS_assemblymutate ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA ************************************************************ HS_haplotype1 ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT HS_haplotype2 ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT HS_assemblymutate ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT ************************************************************ HS_haplotype1 CCATCTGAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAAGTTTCAT HS_haplotype2 CCATCTTAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAAGTTTCAT HS_assemblymutate CCATCTGAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAATTTTCTT ****** ********************************************** **** * HS_haplotype1 TGTCTACATGGGGATCCCAAAAAATTGGGATTAGTATGTATCTAAAAATGAGACTGAAGG HS_haplotype2 TGTCTACATGGGGATCCAAAAAAATTGGGATTAGTATGTATCTAAAAATGAGACTGAAGG HS_assemblymutate TGTCTACATGGGGATCCAAAAAAATTGGGATCAGTATGTATCTAAATATGAGCCTGAAGG ***************** ************* ************** ***** ******* HS_haplotype1 TCTCCTGTCCAGTCAGACAAAATACTAGCCACCATAGGTTTCAAGAGTAGCGATCTTTTC HS_haplotype2 TCTCCTGTCCAGTCAGACAAAATACTAGCCACCATAGGTTTCAAGAGTAGGGATCTTTTC HS_assemblymutate TCTCCTGTCCAGTCAGACAATTTACTAGCCACCATAGGTTTCAAGAGTAGCGATCTTTTC ******************** **************************** ********* HS_haplotype1 TTTTCTTCTCTCTGCGCCTAACAAAACTATATGAGACCTCCAGAACTTCTCAGCTCATCC HS_haplotype2 TTTTCTTCTCTCTGCGCCTAGCAAAACTATATGAGAGCTCCAGAACTTCTCAGCTCATCC HS_assemblymutate TTTTCTTCTCTCTGCGCCTAACAAAACTATATGAGAGCTCCATAACTTCTCAGCTCATCC ******************** *************** ***** ***************** HS_haplotype1 TCATGTGTGGAACCATGTGGCTGGCGGTGAAAACTGACTCAAACGTCTAGAAATAAGCAC HS_haplotype2 TCATGTGTGGATCGATGTGGCTGGCGGTGAAAACTGACTTAAACGTCTAGAAATAAGCAC HS_assemblymutate TCATGTGTGGAACCATGTGGCTGGCGGTGAAAACTGACTCAAACGTCTAGAAATAAGCAC *********** * ************************* ******************** HS_haplotype1 ACTTACATATCCGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC HS_haplotype2 ACTTACATATCAGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC HS_assemblymutate ACTTACATATCCGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC *********** ************************************************ HS_haplotype1 TGGAATGAACCTTCAGTCGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT HS_haplotype2 TGGAATGAACCTTCAGTGGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT HS_assemblymutate TGGAATGAACCTTCAGTCGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT ***************** ****************************************** HS_haplotype1 CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAATAGGACTTTGCTTGTTATCA HS_haplotype2 CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAAAAGGACTTTGCTTGTTATCA HS_assemblymutate CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAAAAGGACTTTGCTTGTTATCA **************************************** ******************* HS_haplotype1 GAACTCCTCATAATACAAATGCCACTTCACTTGAAATACGCACGTTTTTATACATATGGG HS_haplotype2 TAACTCCTCATAATACAAATGCCACTTCACTTGGAATACGCACGTTTTTATACATATGGG HS_assemblymutate TAACTCCTCATAATACAAATGCCACTTCACTTGAAATACGCACGTTTTTATACATATGGG ******************************** ************************** HS_haplotype1 CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT HS_haplotype2 CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT HS_assemblymutate CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT ************************************************************ HS_haplotype1 TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTTGAA HS_haplotype2 TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTTGAA HS_assemblymutate TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTCTAA ******************************************************** ** HS_haplotype1 TTTTGAAAGGCAGTAGCAAGAAATGGCAGATTGGTGGCCTCGCTAATTCACTTTGGAACT HS_haplotype2 TTTTGAAAGGCAGTAGCAAGAAATGGCAGATTGGTGGCCTCGCTAATTCACTTTGGAACC HS_assemblymutate TTTTGAAAGGCAGTAGCAAGAAATGGCGGATTGGTGGCCTCGCTAATCCACTTTGGAACC *************************** ******************* *********** HS_haplotype1 CCGGCCTGGGTCCTTGTGTGCCAGGGAGCCACTGTTAATATGGGCCGGCCGCTAATATTT HS_haplotype2 CCGGCCTGGGTCCTTGTGTGCCAGGGAGCCACTGTTAATATGGGCCGGCCGCTAATATTG HS_assemblymutate CCGGCCTGCGTCCTTTTGTGCCAGGGAGCCACTGGTAATATGGGCCGGCCGCTAATATTT ******** ****** ****************** ************************ HS_haplotype1 TATCTCACTTTGTATTCCTCACCTAGAAAATAGTAGGACTGACAAACCCCGCCCGCCCTT HS_haplotype2 TATCTCACTTTGTGGTCCTCACCTACAAAAGGGTAGGACTGACAAACCCCGCCCGCCCTT HS_assemblymutate TATCTCACTTTGTGGTCCTCACCTACAAAAGGGTAGGACTGACAAACCCCGCCCGCCCTT ************* ********** **** **************************** HS_haplotype1 GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACTCCCCAGATTGATTA HS_haplotype2 GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACCCCCCAGATTGATTA HS_assemblymutate GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACTCCCCAGATTGATTA ********************************************* ************** HS_haplotype1 CAGCGTTAGGATGTATCCCAACATCTGAATTGCCGATAACAAAACAGGCTTCTATCAGCC HS_haplotype2 CAGCTTTAGGATGTATCCCAACATCTGAATTGCCCATAACAAAACAGGCTTCTATCAGCC HS_assemblymutate CAGCGTTAGGATGTATCCCAACATCTGAATTGCCCGTAACAAAACAGGCTTCTATCAGCC **** ***************************** ************************ HS_haplotype1 TCCTGTGACAGGTGCTTGAAGCTCTATCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC HS_haplotype2 TCCTGTGACAGGTGCTTGAAGCTCTACCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC HS_assemblymutate TCCTGTGACAGGTGCTTGAAGCTCTATCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC ************************** ********************************* HS_haplotype1 ACGCCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGAGCATCTTGAT HS_haplotype2 ACGTCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGACCATCTTGAT HS_assemblymutate ACGTCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGACCATCTTGAT *** ********************************************** ********* HS_haplotype1 TTAAGGCTCACTTAAATACATACTACCCTCCCATGCTAAAGCCACTCTCAAAAATCTGCT HS_haplotype2 TTAAGGCTCACTTAAATACATACTACCTTCCCATGCTAAAGCCACTCTCAAAAATCTGCT HS_assemblymutate TTAAGGCTCACTTAAATACATACTACCCTCCCATGCTAAAGCCACTCTCAAAAATCTGCT *************************** ******************************** HS_haplotype1 CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA HS_haplotype2 CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA HS_assemblymutate CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA ************************************************************ HS_haplotype1 ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC HS_haplotype2 ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC HS_assemblymutate ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC ************************************************************ HS_haplotype1 AGTGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGTCCCTGCCTGTT HS_haplotype2 AGGGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGCCCCTGCCTGTT HS_assemblymutate AGGGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGCCCCTGCCTGTT ** ********************************************* *********** HS_haplotype1 CAAGGGGCGAGCCCGGCTCATGCTATTATATAGCATCTCAAGGTCCATTCTAGAAGGGGC HS_haplotype2 CAAGGGGCGAGCCCGGCTCATGCTATTTTATAGCATCTCAAGGCCCATTCTAGAAGGGGC HS_assemblymutate CAAGGGGCGAGCCCGGCTCATGCTATTATATAGCATCTCAAGGTCCATTCTAGAAGGGGC *************************** *************** **************** HS_haplotype1 TTCACAACACACGTGGATGAGAAATATAGCCTGAAACCTCTTCTTTGGAGGCTGAGTTCA HS_haplotype2 TTCACAACACACGTGGATGAGAAATATAGCCTGAAACCTCTTCTTTGGAGCCTGAGTTCA HS_assemblymutate TTCACAACACACGTGGATGAGAAATATAGCCTGAATCCTCTTCTTTGTAGCCTGAGTTCA *********************************** *********** ** ********* HS_haplotype1 ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCTGAGT HS_haplotype2 ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCAGAGT HS_assemblymutate ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCTGAGT ******************************************************* **** HS_haplotype1 GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT HS_haplotype2 GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT HS_assemblymutate GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT ************************************************************ HS_haplotype1 AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA HS_haplotype2 AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA HS_assemblymutate AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA ************************************************************ HS_haplotype1 TAAACAATGGTGGGAGCAATCCGGATCTTTTAATAGGATATGACTTAAATGACAGTTGGC HS_haplotype2 TAAACAATGGTGGGAGCAATCCGGATCTTTCAATAGGATATGACTTAAATGACAGTTGGC HS_assemblymutate TAAACAATGGTGGGAGCAATCCGGATCTTTCAATAGGATATGACTTAAATGACAGTTGGC ****************************** ***************************** HS_haplotype1 TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACTTGGTACAAGTG HS_haplotype2 TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACATGGTACAAGTG HS_assemblymutate TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACTTGGTACAAGTG ************************************************ *********** HS_haplotype1 CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCACCCAAATAATACCTGAGCCAAGAGG HS_haplotype2 CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCTCCCAAATCATACCTGAGCCAAGAGG HS_assemblymutate CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCTCCCAAATCATACCTGAGCCAAGAGG ********************************** ******* ***************** HS_haplotype1 CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG HS_haplotype2 CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG HS_assemblymutate CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG ************************************************************ HS_haplotype1 TGTAAAATATCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCCTTCTAAAATTAACA HS_haplotype2 TGTAAAATATCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCCTTCTAAAATTAACA HS_assemblymutate TATAAAATCTCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCATTCTAAAATTAACA * ****** ************************************ ************** HS_haplotype1 TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT HS_haplotype2 TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT HS_assemblymutate TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT ************************************************************ HS_haplotype1 ATATAGAATTTTGGGAGTGATGACTACAAAAAAAGAGAAACACACTTTCCAAATTGAGAT HS_haplotype2 ATATACGATTTTGGGAGTGATGACTACAAAAAAGGAGAAACACACTTTCTAAATTGAGAT HS_assemblymutate ATATACGATTTTGGGAGTGATGACTACAAAAAAGGAGAAACACACTTTCTAAATTGAGAT ***** ************************** *************** ********** HS_haplotype1 GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT HS_haplotype2 GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT HS_assemblymutate GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT ************************************************************ HS_haplotype1 GCAGTAATCTTATATTCTTTGCTTAGCTGTTCCAACATACTTTTATAAGAAAAGGACAAA HS_haplotype2 GCAGTAATCTTATATTCTTTGCTCAGCTGTTCCAACATACTTTTATAAGTAAAGGACAAA HS_assemblymutate GCAGTAATCTTATATTCTTTGCTCAGCTGTTCCAACATACTTTTATAAGTAAAGGACAAA *********************** ************************* ********** HS_haplotype1 TAATGAGCTTAAAGGATCGCAGCCCCCGAGGACATCGTTAGGTCTCTCCATTGGCCTTTT HS_haplotype2 TAATGTGCTTAAAGGATCACAGCCCCCGAGGACATCGTTAGGTCTCTCCCTTGGCCTTTT HS_assemblymutate TAATGAGCTTAAAGTATCGCAGCCCCCGAGGACATCGTTAGGTCTCTCCATTGGCCTTTT ***** ******** *** ****************************** ********** HS_haplotype1 TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT HS_haplotype2 TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT HS_assemblymutate TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT ************************************************************ HS_haplotype1 GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT HS_haplotype2 GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT HS_assemblymutate GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT ************************************************************ HS_haplotype1 ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA HS_haplotype2 ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA HS_assemblymutate ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA ************************************************************ HS_haplotype1 TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTCTATGTAACAAATAA HS_haplotype2 TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTGTATGTAACAAACAA HS_assemblymutate TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTCTATGTAACAAATAA ********************************************* *********** ** HS_haplotype1 TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA HS_haplotype2 TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA HS_assemblymutate TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA ************************************************************ HS_haplotype1 GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA HS_haplotype2 GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA HS_assemblymutate GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA ************************************************************ HS_haplotype1 GTGCTAATATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG HS_haplotype2 GTGCTACTATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG HS_assemblymutate GTGCTACTATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG ****** ***************************************************** HS_haplotype1 TCTCTACAAGCCACCGCATGGTGGCGGACTTTCAGACTCGGGGAGGTGTTTTTAAGACCA HS_haplotype2 TCTCTACAAGCCACGGCATGGTGGCGGACTTTCAGACTCGGGGAGGTGTTTTTAAGACCA HS_assemblymutate TCTCTACAAGCCACCGCATGGTGATGCACTTTCACACTCGGGGAGGTGTTTTTAAGACCA ************** ******** * ******* ************************* HS_haplotype1 AAAGAGAAGCCTCATTATGACTCTTGTATTTATAAATGCAACCATACTTGAGAATCCCAT HS_haplotype2 AAAGAGAAGCCTCATTATGACTCTTGTATTTATAAATGCAACCATACTTGAGAATCCCAT HS_assemblymutate AAAGAGAAGCCCCATTATGACTCTTGTATTTATAAATGCAACCACACTTGAGAATCCCAT *********** ******************************** *************** HS_haplotype1 TTTATTGTCCTTCGATTGAGAGGTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGCCAGT HS_haplotype2 TTTATTGTCCTTCGATTGAGAGGTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGCCAAT HS_assemblymutate TTTATTGTCCTTCGATTGAGAGCTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGACAGT ********************** ******************************** ** * HS_haplotype1 GTGTAGGAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTGGAATGGAA HS_haplotype2 GTGTAGAAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTTGATTGGAA HS_assemblymutate GTGTAGAAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTTGATTGGAA ****** ******************************************** ** ***** HS_haplotype1 AGGCTGGGCCACTATAAAATCCCTTCGATCTATTGAGTCAGTTAGATAAATTTTAGAATT HS_haplotype2 AGGCTGGGCCAGTATAAAATCCCTGCGATCTATTGAGTCAGTTAGATAAATTTTAGAATT HS_assemblymutate AGGCTGGGCAACTATAAAATCCCTTGGATCTATTGAGTCAGTTAGATAAATTTTAGAATT ********* * ************ ********************************** HS_haplotype1 CCTCAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAATGGACCTC HS_haplotype2 CCTCAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAAGGGACCTC HS_assemblymutate CCTTAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAAGGGACCTC *** ************************************************ ******* HS_haplotype1 ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCTTTTTAATTTACTACATAGGAGCTTG HS_haplotype2 ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCCTTTCAATTTACTATATAGGAGCTTG HS_assemblymutate ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCTTTTTAATTTACTACATAGGAGCTTG ********************************** *** ********* *********** HS_haplotype1 CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGCTTCATTTGT HS_haplotype2 CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGTTTCATTTGT HS_assemblymutate CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGTTTCATTTGT ************************************************** ********* HS_haplotype1 GGCAAGATATACCATGACTAGTCATACAAATTCTTCTAGTTATAAGTGCTCACAATTTCT HS_haplotype2 GGCAAGATATACCATGACTAGTCATACAAAGTCTTCTAGTTATAAGTGCTCACAATTTCT HS_assemblymutate GGCAAGATATACCATGACTAGTCATACAAATTCTTCTAGTTATAAGTGCTCACAATTTCT ****************************** ***************************** HS_haplotype1 AAGACAGCAACAACACCGCCACTTTTCTGAGGCTGTCTTACAGGCACTCAGGAAACATCC HS_haplotype2 AAGACAGCAACAACACCGCCACTTTTCTGAGGCTGTCTTACAGGCACTCAGGAAACATCA HS_assemblymutate AAGACAGCAACAACACCGCCACTTTTCTGAGGGTGTTTTACAGGCACTCTGGAAACATCA ******************************** *** ************ ********* HS_haplotype1 GAGGCAGACTATATTCAAACTCCCTTAACTCCATAATGTTTTAAGCAAAAAGTGAAGCTG HS_haplotype2 GAGGCAGACTATATTCAAACTCCCTTAACTCCATATTGTTTTAAGCAAAAAGTGAAGCTG HS_assemblymutate GAGGCAGACTATATTCAAACTCCCTTAACTCCATAATGTTTTAAGCAAAAAGTGAAGCTG *********************************** ************************ HS_haplotype1 GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT HS_haplotype2 GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT HS_assemblymutate GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT ************************************************************ HS_haplotype1 GTTTAATAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGCGGGAGTTCTCTCGG HS_haplotype2 GTTTATTAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGTGGGAGATCCCTCGG HS_assemblymutate GTTTAATAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGCGGGAGTTCTCTCGG ***** *************************************** ***** ** ***** HS_haplotype1 CTCTTCTGGCTTGCTCCCCATAGATATAGTTTCCATGTAAAATAACTGCCAGCTGGCCAG HS_haplotype2 CTCTTCTTGCTTGCTCCCAATAGATATAGTTTCCATGTAAAATAACTGCCAGCTGGCCAG HS_assemblymutate CTCTTCTTGCTTGCTCCCAATAGATATAGTTTCAATGTAAAATAACTGCCAGCTGGCCAG ******* ********** ************** ************************** HS_haplotype1 ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT HS_haplotype2 ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT HS_assemblymutate ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT ************************************************************ HS_haplotype1 CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC HS_haplotype2 CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC HS_assemblymutate CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC ************************************************************ HS_haplotype1 TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT HS_haplotype2 TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT HS_assemblymutate TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT ************************************************************ HS_haplotype1 TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATCTTTGAGCAGCGGGTGGT HS_haplotype2 TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATTTTTGAGCAGCTGGTGGT HS_assemblymutate TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATTTTTGAGCAGCTGGTGGG ****************************************** ********** ***** HS_haplotype1 GTTGGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATTTTACCCATTT HS_haplotype2 GTTGGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATCTTACCCATTT HS_assemblymutate GTTAGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATTTTACCCATTT *** ********************************************* ********** HS_haplotype1 CCAGCCTGGGTGCAGACCCCCCCCAGCCTGTGTTTGGAGGTTCTGGCTCCACATCAGAGG HS_haplotype2 CCAGCCTGGGTGCAGACCCCCCCCAGCCTGGGTTTGGAGGTTCTGGCTCCACATCAGAGG HS_assemblymutate CCAGCCTGGGTGCAGACCCCCCCCAGCCTGTGTTTGGAGGTTCTGGCTCCACATCAGAGG ****************************** ***************************** HS_haplotype1 CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT HS_haplotype2 CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT HS_assemblymutate CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT ************************************************************ HS_haplotype1 GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGTAGCTGCACTGCAGGCTGAGCTATA HS_haplotype2 GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGGAGCTGCACTGCAGGCTGAGCTATA HS_assemblymutate GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGGAGCTGCACTGCAGGCTGAGCTATA *********************************** ************************ HS_haplotype1 AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA HS_haplotype2 AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA HS_assemblymutate AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA ************************************************************ HS_haplotype1 CACGACCCACAGGAGAGATTTTCAAAAAGAATTTTTTGTCTTCAAAATAATATTTAATCC HS_haplotype2 CACGACCCACAGGAGAGATTTTCAAAAAGAATTTTTTGTCTTCATAATAATATTTAATCC HS_assemblymutate CACGACCCACAGGCGAGTTTTTCAAAAAGAATTTTATGTCTTCATAATAATATTTAATCC ************* *** ***************** ******** *************** HS_haplotype1 ATGAATTTTAGATGTTCTCTTCCTGGGACAAAAGTTGGCAGAAGATAAATTTAACATCCC HS_haplotype2 ATGAATTTTAGATGTTCTCTACCTGGGACAAAAGTTGGCAGAAGATAAATTTAACAGCCC HS_assemblymutate ATGAATTTTAGATGTTCTCTTCCTGGGACAAAAGTTGGCAGAAGATAAATTTAACATCCC ******************** *********************************** *** HS_haplotype1 CACTTCAAATACCCTTGGCAGGAACACACCGTTTCTTAATATCTGCAACTGCAGCTAGCG HS_haplotype2 CACTTCAAATACCCTTGGCCGGAACACACCGTTTCTTAATATCTGCAACTGCAGCAAGCG HS_assemblymutate CACTTCAAAGACCCTTGGCTGGAACACACCGTTTCTTAATATCTGCAACTGCAGCAAGCG ********* ********* *********************************** **** HS_haplotype1 GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT HS_haplotype2 GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT HS_assemblymutate GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT ************************************************************ HS_haplotype1 CTCAATTATTGGACGCTGGCTAAGCTTCTTGAGACATATGTGGTTGTTTTTCTCCCAGTA HS_haplotype2 CTCAATTATTGGACGCTGGCTAAGCTTTTTGAGACATATGTGGTTGTTTTTCTCCCAGTA HS_assemblymutate CTCAATTATTGGACGCTGGCTAAGCTTTTTGAGACATATGTGGTTGTTTTTCTCCCAGTA *************************** ******************************** HS_haplotype1 ACAAAGGAAATAAAGTTAACTTGGGGGATTGATCGCCCTATGTATTTTAAAACTTGAAGA HS_haplotype2 ACAAAGGATATAAAGTTAACTTGGGGGATTGATCACCCTATGTATTTTAAAACTTGAAGA HS_assemblymutate ACAAAGGAAATAAAGTTAACTTGGGGGATTGATCGCCCTATGTATTTTAAAACTTGAAGA ******** ************************* ************************* HS_haplotype1 CCTTTTGCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTGCCTATCAGACATGGAAAC HS_haplotype2 CCTTTTCCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTACCTATCAGACATGGAACC HS_assemblymutate CCTTTTCCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTACCTATCAGACATGGAACC ****** ********************************** **************** * HS_haplotype1 TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG HS_haplotype2 TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG HS_assemblymutate TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG ************************************************************ HS_haplotype1 CAATCAGGTCTCCCTTCTTCCTGGGAATCAAACCACAGCTCCCCCGTTACTCAATATATT HS_haplotype2 CAATCAGGTCTCCCTTCTTCCTGGGGATCAAACCACAGCTCCCCCGTTCCTCAATATATT HS_assemblymutate CAATCAGGTCTCCCTTCTTCCTGGGGATCAAACCACAGCTCCCCCGTTCCTCAATATATT ************************* ********************** *********** HS_haplotype1 TTACCTCATCCCACCCCGCGGTGCAGTCACCATGGATATTTGCAAAGTGACTGCTTTTGA HS_haplotype2 TTACCTTATCCCACCCCTCGGTGCAGTCACCATGGATATTTGCAAAGTGACTGCTTTTGA HS_assemblymutate TTACCTCATCCCACCCCGCGGTGCCGTCACCATGGATATTTGCAAAGTGACTGGTTTTGA ****** ********** ****** **************************** ****** HS_haplotype1 GGCACAGTAACTTTCTGGGCTATGAGTAAGTATTTTCTTAACATCACATTGCGGAGCACC HS_haplotype2 GGCACAGTAACTTTCTGGGCTATGAGTAAGTATTTTCTTAACATCACATTGCTGAGCACC HS_assemblymutate GGCACAGTAACTTACTGGGCTATGAGTAAGGATTTTCTTAACATCACATTGCTGAGCACC ************* **************** ********************* ******* HS_haplotype1 ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGCGGGCTCC HS_haplotype2 ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGCGGGCTCC HS_assemblymutate ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGAGGGCCCC **************************************************** **** ** HS_haplotype1 ACACTGTTATATTTGAGACATTCTCAAGCCTAGCCATGAAGTTCTTTGTTTTACAAAAAC HS_haplotype2 ACACTGTTATATTTGAGACATTCTCCAGCCTAGCCATGAAGTTCTTTGTTTCAAAAAAAC HS_assemblymutate ACACTGTTATATTTTAGACATTCTCCAGCCTAGCCATGAAGTTCTTTGTTTCAAAAAAAC ************** ********** ************************* * ****** HS_haplotype1 GGGGGCTCAGTTCTAAGAGGCTTATTTAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG HS_haplotype2 GGGGGCTCAGTTCTAAGAGGCTTATTGAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG HS_assemblymutate GGGGGCTCAGTTCTAAGAGGCTTATTGAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG ************************** ********************************* HS_haplotype1 GCCTATCTGCCTACCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT HS_haplotype2 GCCTATCTGCCTATCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT HS_assemblymutate GCCTATCTGCCTATCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT ************* ********************************************** HS_haplotype1 TCAAGCCAAGCCGGATATTAACACACACTGGAGGCTGCTACCCATAACACACCCTGACAT HS_haplotype2 TCAAGCCAAGCCGGATATTAACACACACAGGAGGCTGCTACCCATAACACACCCTGACAT HS_assemblymutate TCAATCCAAGCCGGATGTTAACACACACTGGAGGCTGCTACCCATAACACACCCTGACAA **** *********** *********** ****************************** HS_haplotype1 AACTTAAGGCCCCTTATCATTAACCAAGCTAATACTGTTCTAAGTGCTGCAGTGGCCAGC HS_haplotype2 AACTTCAGCCCCCTTATCATTAACCAAGCTAATCCTGTTCTAAGTGCTGCAGTGGCCAGC HS_assemblymutate AACTTCAGACCCCTTATCATTAACCACGCTAATCCTGTTCTAAGTGCTGCAGTGGCCTGC ***** ** ***************** ****** *********************** ** HS_haplotype1 CAAAAGGGTTGCTGAGACCAGCCAAAATAACACCAAAGAAATAATCCAGTGCTCCAGCAA HS_haplotype2 CAACAGGGTTGCTGAGACCAGCAAAAATAACACCAAAGAAATAATCCAGTGCTCCAGCAA HS_assemblymutate CAAAAGGGTTGCTGAGACCAGCCAAAATAACACCACAGGACTAATCCAGTGCTCCATCAA *** ****************** ************ ** * *************** *** HS_haplotype1 GGCATCTCCACAACAAGGCCTGTTCTTTCTTAGTTAAAAATGGCAATATCATTATACAAA HS_haplotype2 CGCATCTCCACAACAAGGCCTGTTCTTTCTTACTTAAAAATGGCAATATCATTATACAAA HS_assemblymutate CGCATCTCCACAACAAGGCCTGTTCTTTCTTACTTAAAAATGGCAATATCATTATACAAA ******************************* *************************** HS_haplotype1 AAGAGTTAATCCCAGGCTGGGGGTGATCTATTTGTGATCCTTCCCCGGCCTCCCAGGCTC HS_haplotype2 AAGAGTTAATCCCAGGCTGGGGGTAATCTATTTGTGATCCTTCCCCGGCTTCCCAGGCTC HS_assemblymutate AAGAGTTAATCCCAGGCTGGGGGTGATCTATTTGTGATCCTTCCCCGGCCTCCCAGGCTC ************************ ************************ ********** HS_haplotype1 ACTGCAGAGATAAAAGAAAGATTTGTAGATGAGGCATGGTGATTCGGTTGTAGTTGCCCT HS_haplotype2 ACTGCAGAGATAAAAGAAAGATTTGTAGATGAGGCATGCTGATTCGGTTGTAGTTGCCCT HS_assemblymutate ACTGCAGAGATAAAAGAAAGATTTGCTGATGAGGCATGCTGATTCGGTTGTAGTTGCCCT ************************* *********** ********************* HS_haplotype1 CCTGTAGCTCATCCAAACAAAACCTCTTTCATATAATTGGCAGGCATCTATAGCATCAAT HS_haplotype2 CCTGTAGCTCATCCAAACAAAACCGCTTTCATATAATTGGCAGGCATCTATAGTATCAAT HS_assemblymutate CCTGTAGCTCATCCAAACAAAACCTCTTTCATATAATTGGCAGGCATCTATAGCATCAAT ************************ **************************** ****** HS_haplotype1 AGTCCCATAAGTGATACAAACCAGGCTAGCTGACCCTCCTCCCGAATCACGCTCCAGTGA HS_haplotype2 AGTTCCATAATTGATACAAACCAGGCTAGGTGACCCTCCTCCCGAATCACGCTCCAGTGA HS_assemblymutate AGTTCCATAATTGATACAAACCAGGCTAGGTGACCCTCCTCCCGAATCACGCTCCAGTGA *** ****** ****************** ****************************** HS_haplotype1 GTAGCCCAGGGTCGTGAGTGCTGTGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA HS_haplotype2 GTAGCCCAGGGTCGTGAGTGCTGCGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA HS_assemblymutate GTAGCCCAGGGTCGTGAGTGCTGTGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA *********************** ************************************ HS_haplotype1 TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG HS_haplotype2 TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG HS_assemblymutate TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG ************************************************************ HS_haplotype1 GACATCTCTATGAGAAGGGGTGGGACTCCACTGGACCCAGGGTCCCACAGGCTGTCTTGT HS_haplotype2 GACATCTCTATGAGAAGGGGTGAGACTCCACTGGACCCAGGGTCCCACAGGCTGTCTTGT HS_assemblymutate GACATCTCTATGAGAAGGGGTGGGACTCCACTGGACCCAGGGTCCCACAGTCTGTCTTGT ********************** *************************** ********* HS_haplotype1 CCCATAGACAGGGCTCTCACCACATCAACTTGCCTGATTAAGAGGCAGAGCAAACTAGAG HS_haplotype2 CCCATAGACAGGGCTCTCACCACTTCAACTGGCCTGATTAAGAGGCAGAGCATACTAGAG HS_assemblymutate CGCATAGACAGGGCTCTCACCACTTCAACTGGCCTGATTAAGAGGCAGAGCATACTAGAG * ********************* ****** ********************* ******* HS_haplotype1 TGCCTTTTCTTGAGCCAGAGTAATAGGCATACTTATCTCATAGGTGAAAAAACTCAGCCT HS_haplotype2 TGCCTTTTCTTGAGCCAGAGTAATAGGCCTACTTATCTCATAGGTGAAAAAACTCAGCCT HS_assemblymutate TGCCTTTTCTTGAGCCAGAGTAATAGGCATACTTATCTCATAGGTGAAAAAACTCAGCCT **************************** ******************************* HS_haplotype1 CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA HS_haplotype2 CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA HS_assemblymutate CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA ************************************************************ HS_haplotype1 GGGTAATTGTGGTAGAGGAGTCAGGAGGGTTTCTCCCTCAAAAGAGGTGCTTGAGGCATG HS_haplotype2 GGGTAATTGTGGTAGAGGAGTCAGTAGGGTTTCTCCCACAAAAGAGGTGCTTGAGGCATG HS_assemblymutate GGGTAATTGTGGTAGAGGAGTCAGGAGGGTTTCTCCCTCAAAAGAGGTGCTTGAGGCATG ************************ ************ ********************** HS_haplotype1 CTCAATTTGGCACCAGAAGTCAAAAATAAAATAAACAATGTTGAATAACTGCCAACCCCT HS_haplotype2 CTCAATTTGGCACCACAAGTCAAAAATAGAATAAACAATGTTGAATAACTGCCAACCCCT HS_assemblymutate CTCAATTTGGCACCACAAGTCAAAAATAGAATAAACAATGTTGAATAACTGCCAACCCCT *************** ************ ******************************* HS_haplotype1 TTTCCAGCATGAACATAGTGATAATGGTGCCAGACCCCATAATGGGACCACGAAGAAACA HS_haplotype2 TTTCCAGCATGAACATAGAGATAATGGTGCCAGACCCCATAATGGGACCACAAAGAAACA HS_assemblymutate TTTCCAGCATGAACATAGTGATAATGGTGCCAGACCCCATAATGGGACCACGAAGAAACA ****************** ******************************** ******** HS_haplotype1 TTGTACTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG HS_haplotype2 TTGTAGTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG HS_assemblymutate TTGTACTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG ***** ****************************************************** HS_haplotype1 GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT HS_haplotype2 GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT HS_assemblymutate GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT ************************************************************ HS_haplotype1 TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG HS_haplotype2 TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG HS_assemblymutate TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG ************************************************************ HS_haplotype1 CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGAAATAATATATTGTAG HS_haplotype2 CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGACATAATATATAGTAG HS_assemblymutate CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGAAATAATCTATTGTAG ********************************************* ***** *** **** HS_haplotype1 GGGCAAGCCACATGGGAGAGGCGGAGAACGAGTGTGTGCAGAGTTTCATCACTGATAAAT HS_haplotype2 GGGGAAGCCACATGGGAGAGGCGGAGAAAGAGTGTGTGCAGAGTTTCATCACTGATAAAT HS_assemblymutate GTGGAAGTCACATGGGAGAGGCGGAGAAAGAGAGTGTGCAGAGTTTCATCACTGATAAAT * * *** ******************** *** *************************** HS_haplotype1 AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAACAACCATTGGCTCTCTTAAATG HS_haplotype2 AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAAGAACCATTGGCTCTCCTAAATG HS_assemblymutate AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAACAACCATTGGCTCTCTTAAATG ************************************** ************** ****** HS_haplotype1 GCGGGCGCGACCAGCCTGGAGAGCTGACAAATTTCATCTTGAGGTTTTGTTGGAATTGAG HS_haplotype2 GCGGGCGCGACCAGCCTAGAGAACAGACAAATTTCATCTTGAGGTTTTGATGGAATTGAG HS_assemblymutate GCGGGCGCGACCAGCCAAGAGAACAGATAAATTTCATCTTGAGGTTTTGATGGAATTGAG **************** **** * ** ********************* ********** HS_haplotype1 CAAATACTGGGGATTCACCTCTGAAAGGAAGTTTCAGTGCGCAGGCCTTGTTAGCTTTAG HS_haplotype2 CAAATACTGGGGATTCACCTCTGAAAGGAAGTTTCCGTGCGCAGGCCTTGTTATCTTTAG HS_assemblymutate CCAATACTGGGGATTCAGTTCTGAAAGGAAGTTTCAGTGCGCAGGCCTTGTTAGCTTTAG * *************** **************** ***************** ****** HS_haplotype1 TTGAGATCATGAAAATTTTTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC HS_haplotype2 TTGAGATCATGAAAATTATTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC HS_assemblymutate TTGAGATCATGAAAATTATTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC ***************** ****************************************** HS_haplotype1 TGGGGGAGGGCCGTTCATGTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC HS_haplotype2 TGGGGGAGGGCCGTTCATTTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC HS_assemblymutate TGGGGGAGGGCCGTTCATGTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC ****************** ***************************************** HS_haplotype1 TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT HS_haplotype2 TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT HS_assemblymutate TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT ************************************************************ HS_haplotype1 AAGCTTGCTTGGGCTTGGAAGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGGCAAAGT HS_haplotype2 AAGCTTGCTTTGACTTGGAGGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGTCAAAGT HS_assemblymutate AAGCTTGCTTGGGCTTGGAAGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGGCAAAGT ********** * ****** ********************************* ****** HS_haplotype1 GTTATTCTGGGAGGCATACAAGATTTTCATCCCAACTGTAAGTGACTCAGCAGAATAACT HS_haplotype2 GTTATTCTGGGTGGCATACAAGATTTTCATCCCAAATGTAAGTGACTCAGCAGAATAACT HS_assemblymutate GTTATTCTGGGTGGCATACAAGATTTTCATCCCAAATGTAAGTGACTCAGCAGAATAACT *********** *********************** ************************ HS_haplotype1 GGAGGAAAAATAATAAATAATACAGGAAGAGTACCCTGCCCAGCACTCCGTCACGGAGTG HS_haplotype2 GGAGGAAAAATAATAAATAATTCAGGAAGAGTACCCTGCCCAGCACTCCCTCACGGAGTG HS_assemblymutate GGAGGAAAAATAATAAATAATACAGGAAGAGTACCCTGCCCAGCACTCCGTCACGGAGTG ********************* *************************** ********** HS_haplotype1 TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCCGAGAGGATCA HS_haplotype2 TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCGGAGAGGATCT HS_assemblymutate TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCGGAGAGGATCT ************************************************* ********* HS_haplotype1 GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTGATTGCCTAGGTAATAGC HS_haplotype2 GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTTATTGCCTAGGTAATAGC HS_assemblymutate GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTGATTGCCTAGGTAATAGC ****************************************** ***************** HS_haplotype1 AATCACGCGGCGTGCCATATACATGGCTCTAAATGCTTTGAAAGTATGCTCACTGGAGAA HS_haplotype2 AATCACGCGGCGTGCCATATACATGGCTCTAAATGCTTTGAAAGTATGCTCACTGGAGAA HS_assemblymutate AATCACGCGGCGTGCCATAAACATGGCTCTATATGCTTTAAAAGTATGCTCACTGGAGAA ******************* *********** ******* ******************** HS_haplotype1 CAGGTTAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC HS_haplotype2 CAAGTTAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC HS_assemblymutate CAGGTGAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC ** ** ****************************************************** HS_haplotype1 TCACAACCTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG HS_haplotype2 TCACAACTTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG HS_assemblymutate TCACAACTTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG ******* **************************************************** HS_haplotype1 AGCAATGGAAAAACTGGCTGCGATTCCATCTTATTTATCATATGCGCACGTACTCAGCAC HS_haplotype2 AGCAATGGAAAAACTGGCTGAGATTCCATTTTATTTATCATATGCGCACGTACTCAGCAC HS_assemblymutate AGCAATGGAAAAACTGGCTGCGATTCCATCTTATTTATCATATGCGCACGTACTCAGCAC ******************** ******** ****************************** HS_haplotype1 TTCTTCATCAACCCGGGCCACTAGTCTTCTTAAGATCACCGCGGAGTCCTTCGCAGCCCT HS_haplotype2 TTCTTCATCAACCCGGGCCACTGGTCATATTAAGATCACCGCGGAGTCCTTCCCAGCCCT HS_assemblymutate TTCTTCATCAACCCGGGCCACTGGTCATATTAAGATCACCGCGGAGTCCTTCCCAGCCCT ********************** *** * *********************** ******* HS_haplotype1 TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGCGTGGGGCGCCTGTTTGC HS_haplotype2 TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGAGTGGTGCGCCTCTTTGC HS_assemblymutate TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGCGTGGGGCGCCTGTTTGC ****************************************** **** ****** ***** HS_haplotype1 TGCGCTCTGCAGGTAACGTTTGATTGTTTCCCAACCATGAGGTTATTTAACATGTGTGCG HS_haplotype2 TGCGCTCTGCAGGTAACGTTTGCTTGTTTCGCAACCATGAGGTTATTTAACATGTGTGCG HS_assemblymutate TGCGCTCTGCAGGTAACGTTTGCTTGTTTCGCAACCATGAGGTTATTTAACATGTGTGCG ********************** ******* ***************************** HS_haplotype1 CAACCTGGGAGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCGCCACATTGAGTCTTGTG HS_haplotype2 CAACCTGGGCGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCCCCACATTGAGTCTTGTG HS_assemblymutate CAACCTGGGAGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCGCCACATTGAGTCTTGTG ********* ******************************** ***************** HS_haplotype1 CCTCTCTATTTATCCTGCACCAGGTGGAAGCAGGCTTCTGCAGTAGCCCTTTATTGCTCT HS_haplotype2 CCTCTCTATTTATCCTGCACCAGCTGGAAGCAGGCTTCTGCAGTAGCCATTTATTGCTCT HS_assemblymutate CCTCTCTATTTATCCTGCACCAGCTGGAAGCAGGCTTCTGCAGTAGCCATTTATTGCTCT *********************** ************************ *********** HS_haplotype1 GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC HS_haplotype2 GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC HS_assemblymutate GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC ************************************************************ HS_haplotype1 CTCACTTTTAAGTTAGCTGCCGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC HS_haplotype2 CTCACTTTTAAGATAGCTGCAGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC HS_assemblymutate CTCACTTTTAAGATAGCTGCAGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC ************ ******* *************************************** HS_haplotype1 AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGTAAGGGGACAGGTGAAAACTCTTCCT HS_haplotype2 AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGAAAGGGGACAGGTGAAAACTCTTCCT HS_assemblymutate AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGTAAGGGGACAGGTGCAAACTCTTCCT ********************************** ************* *********** HS_haplotype1 AGGCTTGTATAAACCAAGGGGAGCCTACGTTTTAAACCCATTATTTAAATTTAACACAGG HS_haplotype2 AGGCTTGTATAAACCAAGGTGAGCCTAGGTTTTGAACCCATTATTTAAATTTAACACAGG HS_assemblymutate ATGCTTGTATAAACCAAGGTGAGCCTAGGTTTTGAACCCATTATTTAAATTTAACGCAGG * ***************** ******* ***** ********************* **** HS_haplotype1 GGTGCGCCCAACATCTCTTTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG HS_haplotype2 GGTACGCCCAACATCTCTTTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG HS_assemblymutate GGTTCGCCCAACATCTCTGTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG *** ************** ***************************************** HS_haplotype1 GAGATAATTCCTGGCCGAGTGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT HS_haplotype2 CCGATAATTCCTGGCCGAGCGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT HS_assemblymutate CCGATAATTCCTGGCCGAGCGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT ***************** **************************************** HS_haplotype1 TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA HS_haplotype2 TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA HS_assemblymutate TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA ************************************************************ HS_haplotype1 AACCTTCTTCTTGGTATAAATAATTCTCTTACTATGGTCTTTAATGAAAGTCCTTATAGC HS_haplotype2 AACCTTCTTCTTGGTATAAACAATTCTCTTACTATGGTCTTTAATGAAAGTCCTCATAGC HS_assemblymutate AACCTTCTTCTTGGTATAAACAATTCTCTTACTATGGTCTTTAATGAAAGTCCTCATAGC ******************** ********************************* ***** HS_haplotype1 AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT HS_haplotype2 AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT HS_assemblymutate AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT ************************************************************ HS_haplotype1 GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTTTAGATCTCAGC HS_haplotype2 GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTCTAGATCTCAGC HS_assemblymutate GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTCTAGATCTCAGC ************************************************ *********** HS_haplotype1 CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACTAGAAAAGACTAGTTCCCTCCGGGT HS_haplotype2 CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACCAGAAAAGACTAGTTCCCTCCGGGT HS_assemblymutate CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACTAGAAAAGGCTAGTTCACTCCGGGT *********************************** ******* ******* ******** HS_haplotype1 GGTTGATGAAACCCACTGGATGCTTCTAACTAACTTGAAAGACGGCACATTAAAGGGTCT HS_haplotype2 GGTTGATGAAACCCACTCGATGCTTCTAACTAACTTGAAAGACAGCACATTAAAGGGTCT HS_assemblymutate GGTTGATGAAACCCACCCGATGCTTCTAACTAACTTGAAAGACAGCACATTAAAGGGTCT **************** ************************* **************** HS_haplotype1 GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT HS_haplotype2 GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT HS_assemblymutate GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT ************************************************************ HS_haplotype1 ATTTTAGCCTGTGGGTAGAGACAGTAACAAAAGACTTTATTTACTCATTTTCAATCGCTC HS_haplotype2 ATTTTAGCCTGTGGGTAGAGACAGTAAGAAAAGACTTTATTTACTCATTTTCAATCGCTC HS_assemblymutate ATTTTAGCCTGTGGGTAGAGACAGTAAGAAAAGACTTTATTTACTCATTTTCAATCGCTC *************************** ******************************** HS_haplotype1 TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG HS_haplotype2 TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG HS_assemblymutate TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG ************************************************************ HS_haplotype1 TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT HS_haplotype2 TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT HS_assemblymutate TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT ************************************************************ HS_haplotype1 GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCCCAGACCTACTTAAGCTTAA HS_haplotype2 GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCGCAGAACTACTTAAGCTTAA HS_assemblymutate GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCCCAGACCTACTTAAGCTTAA **************************************** **** ************** HS_haplotype1 TGTATCTGCATCATGCGGGTCTGGGTGTGGACGCCCCAGTTAACGAAGTGTAAAAAAGAT HS_haplotype2 TGTATCTGCATCATGCGGGTCTGGGTGTGGACGCCCCAGTTAACGAAGTGTAGAAAAGAT HS_assemblymutate TGTATCTGCATCATGCGGGTATGCGTGTGGACGCCCCAGTTAACGAAGTGTAGAAATGAT ******************** ** **************************** *** *** HS_haplotype1 GGAAGAAGGCTCACTTATGGATATTTGGTTCCCAAACAAGCATTTCCTCTAACAGTGGAC HS_haplotype2 GGAAGAAGGCTCACTTATGGATATTTGGTTCCCAAACAAGCATCTCCTCTAACAGTGGAC HS_assemblymutate GGAAGAACGCTCACTTATGGATATTTGGTTCCCAAACAAGCATTTCCTCTAACAGTGGAC ******* *********************************** **************** HS_haplotype1 TAATAAAACAAAAGGGCACGAAAGAAATTCTGCCCTCTTGCAGTAAGGCTGATGAGTGGG HS_haplotype2 TAATAAAACAAAAGGGCACGAAAGAAATTCTGCCCTCTTGCAGTAAGGCTGATGAGTGGG HS_assemblymutate TAATAAAACAAAAGGGCACGAAAGAAATTCTCCCCTTTTGCAGTAAGGCTGATGAGTGGG ******************************* **** *********************** HS_haplotype1 ATTACATCACCACAACTTGAATATGTGTGGCTTTTTTGGTATATAGTCTTAAATCTTAGG HS_haplotype2 ATTACATCACCACAACTTGAATAAGTGTGGCTTTTTTGGTATATAGTCTTAAATCTTAGG HS_assemblymutate ATAACATCACCACAACTTGAATATGTGTGGCTTTTTTGGCATATAGTTTTAAATCTTAGG ** ******************** *************** ******* ************ HS_haplotype1 ACTCTGTCCACTAAAGCTTTAAAGGAAAATGTAGGGCATATCTGCAGCGGCTTTTGTTCC HS_haplotype2 ACTCTGTCCACTAAAGCTTTAAAGGAAAATTTAGGGCATCTCTGCAGAGGCTTTTGTTCC HS_assemblymutate GCTCTGTCCACTAAAGCTTTAAAGGAAAATTTAGGGCATCTCTGCAGAGGCTTTTGTTCC ***************************** ******** ******* ************ HS_haplotype1 TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT HS_haplotype2 TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT HS_assemblymutate TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT ************************************************************ HS_haplotype1 GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCCGGAGGCACCAT HS_haplotype2 GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCTGGAGGCACCAG HS_assemblymutate GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCTGGAGGCACCAG ************************************************ ********** HS_haplotype1 GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATATACCGCAGTCATGCCCTTCCTTT HS_haplotype2 GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATAAACCTCAGACATGCCCTTCCTTT HS_assemblymutate GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATATACCGCAGTCATGCCCTTCCTTT ************************************* *** *** ************** HS_haplotype1 TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT HS_haplotype2 TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT HS_assemblymutate TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT ************************************************************ HS_haplotype1 TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCTCC HS_haplotype2 TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCTCC HS_assemblymutate TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCGCC ********************************************************* ** HS_haplotype1 CAGAGAGGTTTAAATGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT HS_haplotype2 CAGAGAGGTTTAAAAGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT HS_assemblymutate CAGAGATGTTTAAAAGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT ****** ******* ********************************************* HS_haplotype1 CTGTTTTGTTTATCTGAAGCTGGTTATTCTTTAGTATTGTATATTGGGCATTGTTCCATC HS_haplotype2 CTGTTTTGTTTATCTGAAGCCGGTTATTCTTTAGTATTGTATTTTGGGCATTGTTCCATC HS_assemblymutate CTGTTTTGTTTATCTGAAGCTGGTTATTCTTTAGTATTGTATATTGGGCATTGTTCCATC ******************** ********************* ***************** HS_haplotype1 TTTTGTTAGGGCACCGCACTCAGATATGTGCTAATGGGAATCATCAGGTGTCCTCTCCAC HS_haplotype2 TTTTGTTAGGGCACTGCACTCAGATCTGTGCTAATGGGAATAATCAGGTGTCCTCTCCAC HS_assemblymutate TTTTGTTAGGGCACTGCACTCAGATCTGTGCTAATGGGAATAATCAGGTGTCCTCTCCAC ************** ********** *************** ****************** HS_haplotype1 ACCCGGAAGCCCTGCTAATAGCAGAGTTCGGAATAATAAATCCTGAGAAATATGAACCAC HS_haplotype2 ACCCGGAAGCCCTGCTAATAGCAGAGTTCGGAATAATAAATCCTGAGAAATATGAACCAC HS_assemblymutate ACCCGGAAGCCCTGCTAATTGCAGAGTTCGCAATAATAAATCCTGAGAATTGTGAACCAC ******************* ********** ****************** * ******** HS_haplotype1 ATCAGAGGAACCCCCCTCCTCTCGTACATTTGTAGCAACAATATGAAGGATGGCGAAATC HS_haplotype2 ATCAGAGGAACCCCCCTCCTCTCGTACATTTGTAGTAACAATATGAAGGATGGCGAAATC HS_assemblymutate ATCAGGGGACCCCCCCTCCTCTCGTACATTTGTAGTAACAATATGAAGGATGGCGAAATC ***** *** ************************* ************************ HS_haplotype1 CCAGGTCACATAACCCTGGGGCCTAAAAAAACCCTGGATTTACTTTTCATCATTAAAAAC HS_haplotype2 CCAGGTTACATAACCCTGGGGCCTAAAAAAACCCCGGATTTACTTTTCATCATTAAAAAC HS_assemblymutate CCAGGTCACACAACCCTGGGGCCTAAAAAAACCCTGGATTTACTTTTCATCATTAAAAAC ****** *** *********************** ************************* HS_haplotype1 AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTCGATGGCATACTGGGA HS_haplotype2 AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTAGATGGCATACTGGGA HS_assemblymutate AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTAGATGGCATACTGGGA ******************************************** *************** HS_haplotype1 ACCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTGGCCAC HS_haplotype2 AGCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTAGCCAC HS_assemblymutate AGCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTGGCCAC * **************************************************** ***** HS_haplotype1 TGTGCTAGAACACACCCCTCATCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT HS_haplotype2 TGTGCTAGAAGACACCCCTCCTCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT HS_assemblymutate TGTGCTAGAAGACACCCCTCCTCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT ********** ********* *************************************** HS_haplotype1 AGGAGCTTTTCTTACTTGTTTCCGACCAGCGCATTGCTTTATCTTGTGTTCAGGCTGCTT HS_haplotype2 AGGAGCTTTTCTTACTTGTTTTCGACCAGCGCATTGCTTTCTCTTGTGTTCAGGCTGCTT HS_assemblymutate AGGAGCTTTTCTTACTTGTTTCCGACCAGCGCATTGCTTTATCTTGTGTTCAGGCTGCTT ********************* ****************** ******************* HS_haplotype1 CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGTGGGACAAAAATCAGGCCGCGCCC HS_haplotype2 CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGCGGGACAAAAATCAGGCCGCGCCC HS_assemblymutate CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGCGGGACAAAAATCAGGCCGCGCCC ************************************ *********************** HS_haplotype1 GACCTCCGGTCTCTCGTTTTTAATTCTAAGGGATTATATACTCAGAGGAATGCACTGCAA HS_haplotype2 GACCTCCGGTCTCTCATTTTTAATTCTAAGGGCTTATATACTCAGAGGAATGCACTGCAA HS_assemblymutate GACCTCCGGTCTCTCGTTTTTAATTCTAAGGGATTATATACTCAGAGGAATGCACTGCAA *************** **************** *************************** HS_haplotype1 GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCCCCCGTTCACCACTTTTGATG HS_haplotype2 GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCACCCGTTCACCACTTTTGATG HS_assemblymutate GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCACCCGTTCACCACTTTTGATG *************************************** ******************** HS_haplotype1 TAACCTGTCCCCAGAGCAGAGAAGATCATCCGCTCTTCGCCTCATCTTTGGATTTGTGAA HS_haplotype2 TAACCTGTCCCCAGAGCAGAGCAGATCATCAGCTCTTCGCCTCATCTTTGGATTTGTGAA HS_assemblymutate TAACCTGTCCCCAGAGCAGAGAAGATCATCCGCTCTTCGCCTCATCTTTGGATTTGTGAA ********************* ******** ***************************** HS_haplotype1 ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACCTA HS_haplotype2 ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACATA HS_assemblymutate ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACATA ********************************************************* ** HS_haplotype1 GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA HS_haplotype2 GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA HS_assemblymutate GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA ************************************************************ HS_haplotype1 AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGAGCAACCTCTGATAACCTCTCCC HS_haplotype2 AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGTGCAACCTCTGATAACCTCTCCC HS_assemblymutate AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGTGCAACCTCTGATAACCTCTCCC ************************************* ********************** HS_haplotype1 CCACTTATCAGTTCAACCTGTAAGAAGGATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA HS_haplotype2 CCACTTTTCAGTTCAACCTGTAAGAAGAATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA HS_assemblymutate CCACTTATCAGTTCAACCTGTAAGAAGGATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA ****** ******************** ******************************** HS_haplotype1 GGAAGGCCTCTATGGGAAGGGTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAACCTCC HS_haplotype2 GGAAGGCCTCTATGGGAAGGGTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAATCTCC HS_assemblymutate GGAAGGCCTCTATGGGAAAGTTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAATCTCC ****************** * ********************************** **** HS_haplotype1 TAACAGACTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGAGGCTGC HS_haplotype2 GAACAGTCTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGATGCTGC HS_assemblymutate TAACAGACTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGAGGCTGC ***** *********************************************** ***** HS_haplotype1 CCAGGAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATAC HS_haplotype2 CCAGTAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATAC HS_assemblymutate CCAGGAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATCC **** ***************************************************** * HS_haplotype1 AGGTCAGCCAACCTCGTCAAGGCATAGGAGGAGTATATACAAAAGACAAATCACCATTGA HS_haplotype2 AGGTCAGCCAACCTCGTCAAGGCATAGGAGGAGTATATACAAAAGACAAATGACCATTGA HS_assemblymutate AGGTCTGGCAACCTCGTCAAGGCATAGGAGGAGTATATAGAAAAGACAAATCACCATTGA ***** * ******************************* *********** ******** HS_haplotype1 ATTTTCTGCCCAGGGGAATTTGAGATATTATAGTTTTCTTGAAACATATCGCGGGGCTGG HS_haplotype2 ATTTTCTGCCCAGGGGAATTAGAGATATTATAGTTTTCTTGAAAAATATCGCGGGGCTGG HS_assemblymutate ATTTTCTGCCCAGGGGAATTAGAGATATTATAGTTTTCTTGAAAAATATCGCGGGGCTGG ******************** *********************** *************** HS_haplotype1 GATTTTAAACATGACAATGGCTGGTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT HS_haplotype2 GATTTTAAACATGACAATGGCTGTTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT HS_assemblymutate GATTTTAAACATGACAATGGCTGGTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT *********************** ************************************ HS_haplotype1 CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA HS_haplotype2 CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA HS_assemblymutate CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA ************************************************************ HS_haplotype1 TACTTTTGACTACATAAAAGTTATTCAGGAACAGGCCTTCCCCAAAGTCTGCTCCCATTG HS_haplotype2 TACTTTTGACTACATAAAAGTTATTCAGGAACAGGCCTTCCCCAAAGTCTGCTCCCATTG HS_assemblymutate TACTTTTGACTACATAAAAGTTATTCAGGAACACGACTTCCCCAAAGTCTGCTCCCATTG ********************************* * ************************ HS_haplotype1 ACCCTGTTATTGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGCTGGA HS_haplotype2 ACCCTGTTATTGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGATGGA HS_assemblymutate ACCCTGTTATCGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGATGGA ********** ******************************************** **** HS_haplotype1 ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA HS_haplotype2 ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA HS_assemblymutate ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA ************************************************************ HS_haplotype1 ATCTCACTGAAACCTGGCATGAATATATATATGGAATAGAGATATAGCCATGTTGGTGAT HS_haplotype2 ATTTCACTGAAACCTGGCATGAATATATATATGGAATAGAGATATAGCCATGTTGGTGAT HS_assemblymutate ATTTCACCGAAACCTAGCATGAATATACATATGGAATAGAGATATAGCCATGTTCGTGAT ** **** ******* *********** ************************** ***** HS_haplotype1 TCAAAATTAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATCGTGGGCGGAAGTAGCT HS_haplotype2 TCAAAAATAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATGGTGGGCGGAAGTAGCT HS_assemblymutate TCAAAATTAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATCGTGGGCGGAAGTAGCT ****** ************************************ **************** HS_haplotype1 GGATATGATCAGAGAACTGCAACCTTTGAATCAAAATAAACAGTTTTAGTCTGGCTCTCT HS_haplotype2 GGATATGATCAGAGAACTGTAACCTTTGAATCAAAATAAACAGTTTTAGTCTGGCTCTCT HS_assemblymutate GGATATGATCAGAGAACTGTAACCTTTGAATCAAAATAAACAGTTGTAGTCCGGCTCTCT ******************* ************************* ***** ******** HS_haplotype1 AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGGG HS_haplotype2 AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGTG HS_assemblymutate AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGGG ********************************************************** * HS_haplotype1 TTCCTATCAGGCCACAGGTATATCTCTGCGCCACCAAAACTTCCAGGGTGTGAGCCGCCG HS_haplotype2 CTCCTATCAGGCCACAGATATATCTCTGCGCCACCAAAACTTCTAGGGTGTGAGCCGCCG HS_assemblymutate TTCCTATCAGGCCACAGGTATATCTCTGCGCCACCAAAACTCCTAGGGTGTGAGCCGCCG **************** *********************** * **************** HS_haplotype1 CGGGCCCCCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG HS_haplotype2 CGGGCCACCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG HS_assemblymutate CGGGCCCCCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG ****** ***************************************************** HS_haplotype1 GATTTCAGGAGCGCCCTGGCTCCATTTAAATTAGATGCTTTGGTGGTGTCTCTTGATGTT HS_haplotype2 GGTTTCAGGAGCGCCCTGGCTCCACTTTAATTAGATGCTTTGGTGGTGTCTCTTGATGTT HS_assemblymutate GATTTCAGGAGCGCCCTGGCTCCACTTTAATTAGATGCTTTGGTGGTGTCTCTTGATGTT * ********************** ** ******************************** HS_haplotype1 TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTGCAGTGAAACTTTGAACTCATTT HS_haplotype2 TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTACAGTGAAACTTTGAACTCATTT HS_assemblymutate TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTGCAGTGAAACTTTGAACTCATTT ************************************* ********************** HS_haplotype1 TACCGCTGGACACTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC HS_haplotype2 TACCGCTGGACACTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC HS_assemblymutate TACCGCTGGAAATTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC ********** * *********************************************** HS_haplotype1 ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA HS_haplotype2 ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA HS_assemblymutate ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA ************************************************************ HS_haplotype1 CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC HS_haplotype2 CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC HS_assemblymutate CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC ************************************************************ HS_haplotype1 AATGCCCACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA HS_haplotype2 AATGCACACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA HS_assemblymutate AATGCACACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA ***** ****************************************************** HS_haplotype1 TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACTCGGC HS_haplotype2 TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACGCGGC HS_assemblymutate TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACGCGGC ******************************************************* **** HS_haplotype1 TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTGCTAAACCAGCTACTCACTTCAATCTG HS_haplotype2 TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTCCTAAACCAGCTACTCACTTCAATCTG HS_assemblymutate TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTGCTAAACCAGCTACTCACTTCAATCTG ********************************* ************************** HS_haplotype1 TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGTCTGTGTGTCCCTCCTGTGGGGTCTC HS_haplotype2 TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGACTGCGTGTCCCTCCTGTGGGGTCTC HS_assemblymutate TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGACAGCGGGTCCCTCCTGTGTGGTCTC ********************************** * * * ************ ****** HS_haplotype1 TCTGCAGGAATGAAGTTACCCTCCTTCCTTCTTAGGTTGAACATAAAAAATGCCACCTGG HS_haplotype2 TCTGCAGGAATGAAGTTACCCTCCTTACTTCTTAGGTTGAACATAAAAAATGCCACCTGG HS_assemblymutate TCCGCAGGAATGAAGTTACCCTCCTTCCTTCTTAGGTTGAACATAAAAAATGCCACCTGG ** *********************** ********************************* HS_haplotype1 GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTACAAAATGAGATTCCAGCATTTTTAATA HS_haplotype2 GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTATAAAATGAAATTCCAGGATTTTGAATA HS_assemblymutate GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTATAAAATGAAATTCCAGGATTTTGAATA ********************************* ******* ******* ***** **** HS_haplotype1 ATATGAGGCTGGGGCCTAGGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA HS_haplotype2 ATATGAGGCTGGGGCCTACGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA HS_assemblymutate ATATGAGGCTGGGGCCTAGGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA ****************** ***************************************** HS_haplotype1 GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGCACACCAGCTGTGCTGTTTTTGTT HS_haplotype2 GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGGACACCAGCTGTGCTGTTTTTGTT HS_assemblymutate GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGGACTCCCGCTGTGCTGTTTTTGTT ************************************ ** ** ***************** HS_haplotype1 GTTTGTACCTTGAAAGCACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGCTGTTTG HS_haplotype2 GTTTGTACCTTGAAAGCACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGATGTTTG HS_assemblymutate GTTTGTACCTAGAAAACACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGCTGTTTG ********** **** ************************************* ****** HS_haplotype1 TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG HS_haplotype2 TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG HS_assemblymutate TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG ************************************************************ HS_haplotype1 TTTTTTGTACCCCTTACTACTCTCGGCGAGGTAGCACTGCTCCTGTCCTGTAAACATTTT HS_haplotype2 TTTTTTGTACCCCTTACTACTCTCGGCGAGCTAGCACTGCTCTTGTCCTGTAAACATTTT HS_assemblymutate TTTTTTGTACCCCTTACTACTCTCGGCGAGGTAGCACTGCTCCTGTCCTGTAAACATTTT ****************************** *********** ***************** HS_haplotype1 AAGTAAGGCATGGGGGAGGATGGGAGCAGAAGCCCACATAAGGCGCGCGCCTTACCTTCA HS_haplotype2 AAGTAAGGCATGGGGGAGGATGGGAGCAGTAGCCCACATAAGGCGCGCGCCTTACCTTCA HS_assemblymutate AAGTAAGGCATGGGGGAGGATGGGAGTCGTAGCCCACATAAGGCGCGCGCCTTACCTTCA ************************** * ****************************** HS_haplotype1 ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT HS_haplotype2 ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT HS_assemblymutate ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT ************************************************************ HS_haplotype1 CAACAGCAGATTCTTCCTATGTGGGGAGTGGCGTGAGAGAAATATGGGATTATAGGCTCA HS_haplotype2 CAACAGCAGATTCTTCCTATGTGGGGCGTGGCGTGAGAGAAATATGGGATGATAGGCTCA HS_assemblymutate CAACAGCAGATTCTTCCTATGTGGGGCGTGGCGTGAGAGAAATATGGGATGATAGGCTCA ************************** *********************** ********* HS_haplotype1 CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG HS_haplotype2 CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG HS_assemblymutate CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG ************************************************************ HS_haplotype1 TGAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT HS_haplotype2 TCAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT HS_assemblymutate TCAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT * ********************************************************** HS_haplotype1 CAAGTCCGTGACCCTCTCCATAAGAAAAAGTGGCAGACTAGGTGCATAGATATATTGGAA HS_haplotype2 CAAGTCCGTGACCCTCTCCATAAGAAAAAGTGGCAGACTAGGTGCATAGATATATTGGAA HS_assemblymutate CAAGTCCGTGACCCTCTCCATAAGAAAAAGCGGCAGACTGGGTGCATAGATATATTGGAA ****************************** ******** ******************** HS_haplotype1 AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT HS_haplotype2 AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT HS_assemblymutate AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT ************************************************************ HS_haplotype1 CCTTACCAAGCTAAAAACTGGTGATGATCACAATGACCCTATGGTGGGGTTTACAGGTAT HS_haplotype2 CCTTACCAAGCGAAAAACTCGTGATGATCACAATGGCCCTATGGTGGGGTTTACAGGTAT HS_assemblymutate CCTTACCAAGCTAAAAACTGGTGATGATCACAATGACCCTATGGTGGGGTTTACAGGTAT *********** ******* *************** ************************ HS_haplotype1 GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG HS_haplotype2 GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG HS_assemblymutate GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG ************************************************************ HS_haplotype1 GTAAATGCTGGTTCCAACTGATCGAGATATAAAGAATAGGTTCTGTTTCATTTCATACAA HS_haplotype2 GTAAATGCTGGTTCCAACTGATCGAGATATATAGAATAGGTTCTGTTTCATTTCATACAA HS_assemblymutate GTAAATGCTGGTTCCAACTGATCGAGATATAAAGAATAGGTTCTGTTTCATTTCATACAA ******************************* **************************** HS_haplotype1 AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC HS_haplotype2 AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC HS_assemblymutate AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC ************************************************************ HS_haplotype1 AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGACTGTATTGAAAGAGATTTT HS_haplotype2 AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGATTGTATTGAAAGAGATTTT HS_assemblymutate AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGACTGTATTGAAAGAGATTTT ***************************************** ****************** HS_haplotype1 ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGAGATGGGATCATTAGGAGTTATAGCCAG HS_haplotype2 ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGAGATGGGATCATTAGGAGTTATAGCCAG HS_assemblymutate ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGGGACGGGATCATTAGGAGTTATAGCCAG ******************************** ** ************************ HS_haplotype1 TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG HS_haplotype2 TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG HS_assemblymutate TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG ************************************************************ HS_haplotype1 TTGATGACAAGTTATGAAACAAAGTTTGGGAAAGGATGGAGGCAAACAGTCTAATGGTCT HS_haplotype2 TTGATGACAAGTTATGAAACAAAGTTTGGGAAAGGATGGAGGCAAATAGTCTAATGGTCT HS_assemblymutate TTGATGACAAGTTATGAAAAAAAGTTTGGTAAAGGATGGAGGCAAATAGTCTAATGGTCT ******************* ********* **************** ************* HS_haplotype1 CAGCCTGCATGAGCTTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG HS_haplotype2 CATCCTGCATGAGCTTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG HS_assemblymutate CAGCCTGCATGAGATTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG ** ********** ********************************************** HS_haplotype1 AGCAGGTGCCAGCCTCCGCGTCGTACTGAAACCTTTTTATCTAACTGTGTACTGTGGGGA HS_haplotype2 AGCAGGTGCCAGCCTCCGCGGCGTACGGAAACCTTTTTATCTAACTGTGTACTGTGGGGA HS_assemblymutate AGCAGGTGCCAGCCTCCGCAGCGTACGGCAACCTTTTTATCTAACTGTGTACTGTGGGGA ******************* ***** * ******************************* HS_haplotype1 CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACCCAATAT HS_haplotype2 CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACTCAATAT HS_assemblymutate CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACCCAATAT ***************************************************** ****** HS_haplotype1 GACTGAGATCGTTGAAGCAAAACATGACGAATAAATAGTTGGGAGCTCGTCTTTCCTGAA HS_haplotype2 GACTGAGATCGTTGAAGCAAAACATGACGAATAACTAGTTGGGAGCTCCTCTTTCCTGAA HS_assemblymutate GACTGAGATCGTTGAAGCAAAACATGACGAATAACTAGTTGGGAGCTCCTCTTTCCTGAA ********************************** ************* *********** HS_haplotype1 TATAGCATTCTCTTTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG HS_haplotype2 TATAGCATTCTCTGTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG HS_assemblymutate TATAGCATTCTCTTTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG ************* ********************************************** HS_haplotype1 AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC HS_haplotype2 AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC HS_assemblymutate AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC ************************************************************ HS_haplotype1 CTTCTCTACTCCTGGTATATGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC HS_haplotype2 CTTCTCTACTCCTGGTATATGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC HS_assemblymutate CTTCTCTCCTCCTGGTATAAGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC ******* *********** **************************************** HS_haplotype1 AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCGTGGTTG HS_haplotype2 AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCATGGTTG HS_assemblymutate AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCATGGTTG ***************************************************** ****** HS_haplotype1 CTATCTCTGTTCTGTGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG HS_haplotype2 CTATCTCTGTTCTGGGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG HS_assemblymutate CTATCTCTGTTCTGTGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG ************** ********************************************* HS_haplotype1 CTGGCAATTCAGACTCTCTATAGTCCTAATCATGACCTGGCCGGGCCCGTCCACCTCAAG HS_haplotype2 CTGGCAATTCAGACTCTCTATAGTCCTAATCATGACCTGGCCGGGCCCGTCCACCTCAAG HS_assemblymutate CTGGCAATTCAGACTCTCTATAGTCCAAATCAAGACCTGGCCGGGCCCGTCCACCTCAAG ************************** ***** *************************** HS_haplotype1 TTAATTGCCCGCACGGGTGGTCAAGCATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC HS_haplotype2 TTAATTGCCCGCACGGGTGGTCAAGTATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC HS_assemblymutate TTAATTGGCCGCACGGGTGGTCAAGCATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC ******* ***************** ********************************** HS_haplotype1 AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGAAAGATTGTCCACCCACTGC HS_haplotype2 AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGCAAGATTGTCCACCCACTGC HS_assemblymutate AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGCAAGATTGTCCACCCACTGC **************************************** ******************* HS_haplotype1 ACTTGTAAGTTAGAGGGACAAGAAGGTAATCTTGATCTTCTGTTTCAAACAGGGAACTAG HS_haplotype2 ACTTGTAAGTTAGAGGGACAACAAGGTAATCTTGATCTTCTGTCTCAAACAGGGAACTAG HS_assemblymutate ACTTGTAAGTTAGAGGGACAAGAAGGTAATCTTGATCTTCTGTTTCAAACAGGGAACTAG ********************* ********************* **************** HS_haplotype1 AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGAATTTAGTAACCCAGCCGA HS_haplotype2 AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGATGTTAGTAACCCAGCCCA HS_assemblymutate AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGCTGTTAGTCACCCAGCCCA ***************************************** ***** ******** * HS_haplotype1 CTGCACTACAAAACTAGATTTAATCAAGATTAGGGCATTGAGCCAGGATTCACTGGGCAT HS_haplotype2 CTGCACTACAAAACTAGATTTAATCAAGATTAGTGCATTGAGCCAGGATTCACTGGGCAT HS_assemblymutate CTGCACTACAAAACTAGATTTAATCAAGATTAGGGCATTGAGCCAGGATTCACTGGGCAT ********************************* ************************** HS_haplotype1 GTTTTTTCCTCCCTTAAGCTGAGGTCTTTCTCAGAAATTGTAGATGTTAATAATTCCACC HS_haplotype2 GTTTTTTCCTCCCTTAAGCTGAGGTCCTTCTCAGAAATTGTAGATGTTTATAATTCCACC HS_assemblymutate GTTTTTTCCTCCCTTAAGCTGAGGTCCTTCTCAGAAATTGTAGATGTTTATAATTCCACC ************************** ********************* *********** HS_haplotype1 TATTGAAATCCCAGCGGCCGAGGGAGACCACCTAGAATCCTGACCAAGTTTATAGAAAGG HS_haplotype2 TATTGAAATCCCAGCGGCAGAGGGAGACCACCTAGAATCCTGACCTAGCTTATAGAAAGG HS_assemblymutate TATTGAAATCCCAGCGGCCGAGGGAGACCACCTAGAATCCTGACCAAGTTTATAGAAAGG ****************** ************************** ** *********** HS_haplotype1 CTCATGCAGGAAAAGTATTCGCAGGGACGTTGGAGTTCAGAGGATGTGTTAGCTGAAAAC HS_haplotype2 CTCATGCCGGAAAAGTATTCGCAGGGACGTTGGAGTTCAGAGGATGTGTTTGCTGAAAAC HS_assemblymutate CTCATGCAGGAAAAGTATTCGCAGGGACGTTGGAGTAAAGAGGATGTGTTTGCTGAAAAC ******* **************************** ************ ********* HS_haplotype1 ATTTATAGTGCTAATGCCCCTTAACCGGCCTTTCTGTGAAAAAATGCCACACAAGTTTTG HS_haplotype2 ATTTATAGTGCTAATGCCCCTTAACCGGCCTTTCTGTGAAAACATGCCACACAAGCTTTG HS_assemblymutate ATTTATAGTGATAATGCCCCTTAACCGGCCTTTCTGTGAAAAAATGCCACACAAGTTTTG ********** ******************************* ************ **** HS_haplotype1 GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT HS_haplotype2 GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT HS_assemblymutate GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT ************************************************************ HS_haplotype1 TTTGTAGATGGGTATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT HS_haplotype2 TTTGTAGATGGGGATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT HS_assemblymutate TTTGTAGATGGGTATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT ************ *********************************************** HS_haplotype1 CCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT HS_haplotype2 GCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT HS_assemblymutate GCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT *********************************************************** HS_haplotype1 TGCTCCTGCCTCAGGCATTCCAGCAGTCTTTGTTTAACTGTTCCAAAAGGATTTGTCTCA HS_haplotype2 TGCTCCTGCCTCAGGCATTCCAGCAGTCTCTGTTTAACTGTTCCAAAAGGATTTGTCTCA HS_assemblymutate TGCTCCTGCCTCAGGCATTCCAGCAGTCTTTGTTTAACTGTTCCAAAAGGATTTGTCTCA ***************************** ****************************** HS_haplotype1 AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATCTTGCCTGTAT HS_haplotype2 AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATATTGTCTGTAT HS_assemblymutate AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATATTGTCTGTAT ************************************************* *** ****** HS_haplotype1 CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCACAGACTTACTTGGGAGGGTA HS_haplotype2 CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCAGAGACTTACTTGGGAGGGTA HS_assemblymutate CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCACAGACTTACTTGGGAGGGTA **************************************** ******************* HS_haplotype1 GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA HS_haplotype2 GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA HS_assemblymutate GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA ************************************************************ HS_haplotype1 CCGTGTGGGAGGCTTCAGCTATAAAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC HS_haplotype2 CCGTGTCGGAGGCTTCAGCTATAGAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC HS_assemblymutate CCGTGTGGGAGGCTTCAGCTATAAAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC ****** **************** ************************************ HS_haplotype1 GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA HS_haplotype2 GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA HS_assemblymutate GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA ************************************************************ HS_haplotype1 ATTTTTATCAAGCCCTGGCCTTGGGATTGGACAGAATTTAAATATATAGCTCAAAGTCAA HS_haplotype2 ATTTTTATCAAGCCCTGGCCTTGGGATTGGACAGAATTTAAATATATAGCTCAAGGTCAA HS_assemblymutate ATTTTTATCAAGCCCTGGCCTTGTAATTGGACAGAATTTAAATATATAGCTCAGAGTCAA *********************** **************************** ***** HS_haplotype1 GTGTCTGGATTATTTGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG HS_haplotype2 GTGTCTGGATTATATGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG HS_assemblymutate GTGTCTGGATTATATGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG ************* ********************************************** HS_haplotype1 TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACCTGAGACATGTTTATCTCGGAGC HS_haplotype2 TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACTTGAGACATGTTTATCTCGGAGC HS_assemblymutate TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACCTGAGACATGTTTATCTCGGAGC ************************************* ********************** HS_haplotype1 CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT HS_haplotype2 CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT HS_assemblymutate CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT ************************************************************ HS_haplotype1 TTATATATGGTTCTTAAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA HS_haplotype2 TTATATATGGTTCTGGAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA HS_assemblymutate TTATATATGGTTCTTAAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA ************** ******************************************** HS_haplotype1 CATGATCATACAAAGCTCAGAGGATGAGATGTAGAATGATGGCCTGGGGATGGAGGCTGC HS_haplotype2 CATAATCATACAAAGCTCAGAGGATGAGATGTAGAATGCTGGCCTGGGGATGGAGGCTGC HS_assemblymutate CATAATCATACAAAGCTCAGAGGATGAGATGTAGAATGCTGGCCTGGGGATGGAGGCTGC *** ********************************** ********************* HS_haplotype1 AGAACTAAGTTATTTCCTGTATTATCTAAGGCTCTTGTAAGTATTAAGTGGCCCTTCCTG HS_haplotype2 AGAACTAAGTTATTTCCTGTATTATCTAAGGCTATTGTAAGTATTAAGTGGCCCTTCCTG HS_assemblymutate AGAACTAAGTTATTTCCTGTATTATCTAAGGCTCTTGTAAGTATTAAGTGGCCCTTCCTG ********************************* ************************** HS_haplotype1 CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGGCCCTCCCAA HS_haplotype2 CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGACCCTCCCAA HS_assemblymutate CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGACCCTCCCAA ************************************************** ********* HS_haplotype1 GATGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT HS_haplotype2 GGTGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT HS_assemblymutate GGTGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT * ********************************************************** HS_haplotype1 CCCTTTTATGCAGCATCCCAGAGCTACTAAAAATGTCAGACAAAAATACCCGCTTGGAAA HS_haplotype2 CCCTTTTATGCAGCATCCCAGAGCTACTAAAAATGTCAGACAAAAATACCCGCTTGGAAA HS_assemblymutate CCCTTTTATGCAGCATCCCAGAGCTACTAAACATCTCAGACAAAAATACCCGCTTGGAAA ******************************* ** ************************* HS_haplotype1 ATCCCCACCTAGGGCCTCCCTACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC HS_haplotype2 ATCCCCACCTAGGGCCTCCCCACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC HS_assemblymutate ATCCCCACCTAGGGCCTCCCTACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC ******************** *************************************** HS_haplotype1 TCAGCTGACTGTAGCTATGGTGAGCCAGAACTATTTATTTTTTAGAAGAAAGAAGGGAAA HS_haplotype2 TCAGCTGTCTGTAGCTATGGTGAGCCAGAAGTATTTATTTTTTAGAAGAATGAAGGGAAA HS_assemblymutate TCAGCTGTCTGTAGCTATGGTGAGCCAGAAGTATTTATTTTTTAGAAGAATGAAGGGAAA ******* ********************** ******************* ********* HS_haplotype1 CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC HS_haplotype2 CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC HS_assemblymutate CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC ************************************************************ HS_haplotype1 ATCCAGCGCTTTGCACCGTGGGAAATTTTATAAGGACTGACAGAATAGATATGGTTAGTT HS_haplotype2 ATCCAGCGCTGTGCACGGTGGGAAATTTTATAAGGACTGACAGAATATATATGGTTAGGT HS_assemblymutate ATCCAGCGCTGTGCACGGTGGGAAATTTTATAAGGACTGACAGAATATATATGGTTAGGT ********** ***** ****************************** ********** * HS_haplotype1 CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATATGAGGTTTTGTGC HS_haplotype2 CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATATGAGGTTTTGTGC HS_assemblymutate CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATACGAGGTTTCGTGC *********************************************** ******* **** HS_haplotype1 CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG HS_haplotype2 CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG HS_assemblymutate CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG ************************************************************ HS_haplotype1 CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACGCGCCTGTAGTCAGAGAT HS_haplotype2 CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACGCGCCTGTAGTCAGAGAT HS_assemblymutate CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACTCGCCTGTATTCAGAGAT ****************************************** ******** ******** HS_haplotype1 GGTTCAGGCTGTCCCAGAGTAATGCCTTTGGTCCAGTGATCGCCACTGAGTCCGGCACAG HS_haplotype2 GGTTCAGGCTGTCCCAAAGTAATGCCTTTGGTCCAGTGATCTCCACTGAGTCCTGCACAG HS_assemblymutate GGTTCAGGCTGTCCCAAAGAGATGCCTTTGGTCCAATGATCTCCACTGAGTCCTGCACAG **************** ** ************** ***** *********** ****** HS_haplotype1 GAGTGTGCCTGAGAACAGAGGTGTATTTTCTATTAAAAACAATCACAGAGCATCAGAAAT HS_haplotype2 GAGTGTGCCTGAGAACAGAGGTGTATCTCCTATTAAAAACAATCACAGAGCATCAGAAAT HS_assemblymutate GAGTGTGGCTGAGAACAGAGGTGTATTTTCTACTAAAAACAATCACAGAGCATCAGAAAT ******* ****************** * *** *************************** HS_haplotype1 TATAGCTTCCACCAAGGCCAATGTAGCCTCGTGCGGGATAAAACTGCCAAGCGCAGCTAG HS_haplotype2 TATAGCTTCCACCAAGGCCAATGTAGCCTCGTGCGGGATAAAACTGCCAAGCGCAGCTAG HS_assemblymutate TATAACTTCCACCAAGGCCAATGTAGCCTGGTGCGGGATAAAACTGCCAAGCGTAGCTAG **** ************************ *********************** ****** HS_haplotype1 GATATTACTTAAAATAAAACATCATCTCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT HS_haplotype2 GATATTACTTAAAATAAAACATCATCGCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT HS_assemblymutate GATATTACTTAAAATAAAACATCATCTCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT ************************** ********************************* HS_haplotype1 TACGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT HS_haplotype2 TGCGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT HS_assemblymutate TGCGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT * ********************************************************** HS_haplotype1 TTTCTTTTGTCAAAGGCAACATTTTTAGAGCTGCCTAATCGCTACAAGGTGAGATCTTCA HS_haplotype2 TTTCTTTTGTCAAAGCCAACATTTTTAGACGTGCCTAATCGCTACAAGGTGAGATCTTCA HS_assemblymutate TTTCTTTTGTCAAAGGCAACATTTTTAGAGCTGCCTAATCGCTACAAGGTGAGATCTTCA *************** ************* ***************************** HS_haplotype1 AGTCCTGACATTCATCAAAAATACCTTCTGCTCACTGTCCTGAGGTACACACCCAGGCAA HS_haplotype2 AGTCCTGACATTCATCAAAAATTCCTTCTGCTCACTGGCCTGAGGTACACACCCAGGCAA HS_assemblymutate AGTCCTGACATTCATCAAAAATTCCTTCTGCTCACTGGCCTGAGGTACACACCCAGGCAA ********************** ************** ********************** HS_haplotype1 ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACACACTTATTTTAT HS_haplotype2 ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACTCACTTATTTTAT HS_assemblymutate ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACACACTTATTTTAT *********************************************** ************ HS_haplotype1 CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCGGATGTAATCTCGAGTTTGTTTCCATATC HS_haplotype2 CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCCGATGTAATCTCGAGTTTGTTTCCATATC HS_assemblymutate CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCCGATGTAATCTCGAGTTTGTTTCCATATC ******************************* **************************** HS_haplotype1 ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT HS_haplotype2 ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT HS_assemblymutate ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT ************************************************************ HS_haplotype1 TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTACTTTTGTATCAATGATGATGTCTTCT HS_haplotype2 TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTAGTTTTGTATCAATGATGATGTCTTCT HS_assemblymutate TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTAGTTTTGTATCAATGATGATGTCTTCT ********************************** ************************* HS_haplotype1 GCTTACAGAGTGTTTCATAACTTTCACTTGATAGGTGCCTGAGCTCTGGTCCCTGGAGTT HS_haplotype2 GCTTACAGAGTGTTTCATAACTTTCACTTGATATGTGCCTGACCTCTGGTCCCTGGAGTT HS_assemblymutate GCTTACAGAGTGTTTCATAACTTTCACTTGATAGGTGCCTGAGCTCTGGTCCCTGGAGTT ********************************* ******** ***************** HS_haplotype1 CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTGGTGGAATCAAATT HS_haplotype2 CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTCGTGGAATCAAATT HS_assemblymutate CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTCGTGGAATCAAATT ********************************************** ************* HS_haplotype1 GGAAAAATTAAATATGTATTGATGGAGGAATAACTTTGTACCCAGCCGTGGGAACCGCTC HS_haplotype2 GGAAAAATTAAATATGTATTGATGGAGGAATACCTTTGTACCCAGCCGTGGGAACCGCTC HS_assemblymutate GGAAAAATTAAATATGTATTGATGGAGGAATAACTTTGTACCCAGCCGTGGGAACCGCTC ******************************** *************************** HS_haplotype1 CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT HS_haplotype2 CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT HS_assemblymutate CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT ************************************************************ HS_haplotype1 GAGGAACAAAATGTATGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG HS_haplotype2 GAGGAACAAAATGTAAGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG HS_assemblymutate GAGGAACAAAATGTATGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG *************** ******************************************** HS_haplotype1 GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATATAAAATTATGGGTTTGAGGCAGG HS_haplotype2 GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATATAAAATTATGGGTTTGAGGCAGG HS_assemblymutate GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATGTAAAATTACGGGTTTGAGGCAGG ************************************ ******** ************** HS_haplotype1 ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC HS_haplotype2 ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC HS_assemblymutate ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC ************************************************************ HS_haplotype1 AGTCGTTCATCTGAACCACCCCAGGTATGAGATTGTCTCCATAAGCGGATCAGCCTCACA HS_haplotype2 AGTCGTTCATCTGAACCACCCCAGGTATGAGATTGTCTCCATAAGCGGATCAGCCTCACA HS_assemblymutate AGTCGTTCATCGGAACCACCCCTGGTATGAGATTGTCTCCATAAGCGGATCATCCTCACA *********** ********** ***************************** ******* HS_haplotype1 TGATATATGTGAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC HS_haplotype2 TAATATATGTGAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC HS_assemblymutate TGCTATATGTAAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC * ******* ************************************************* HS_haplotype1 ACCGTGTGGAGCGGCCACAGCTGAAGGAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC HS_haplotype2 ACCGTGTGGAGCGGCCACAGCTGAAGCAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC HS_assemblymutate ACCGTGTGGAGCGGCCACAGCTGAAGCAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC ************************** ********************************* HS_haplotype1 CACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCAAGGGGA HS_haplotype2 GACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCTAGGGGA HS_assemblymutate CACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCAAGGGGA **************************************************** ****** HS_haplotype1 GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG HS_haplotype2 GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG HS_assemblymutate GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG ************************************************************ HS_haplotype1 GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAGCGCGACTGTTC HS_haplotype2 GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAACGCGACTGTTC HS_assemblymutate GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAGCGCGACTGTTC ************************************************ *********** HS_haplotype1 AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCATTGTGGCTCATTCCTTCAG HS_haplotype2 AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCAGTGTGGCTCATTCCTTCAG HS_assemblymutate AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCAGTGTGGCTCATTCCTTCAG ***************************************** ****************** HS_haplotype1 AAATATTATTAATGTAAAAACTCGTCCTCATATAAATAGAAATTCCCCTCCACAACAAAC HS_haplotype2 AAATATTATTAATGTTAAAACTCGTCCTCATATAAACAGTCATTCCCCTCCACAACAAAC HS_assemblymutate AAATATTATTAATGTAAAAACTCGTCCTCATATAAATAGAAATTCCCCTCCACAACAAAC *************** ******************** ** ******************* HS_haplotype1 CATGCTTTGGAACATTCCCCTCTACCCTTCCTAAGGGACCCAGTAAGGTAACTACCCGGG HS_haplotype2 CATGCTTTGGAACTTTCCCCTGTACCCTGCCTAATGGACCCAGTAAGGTAACTACCCGGG HS_assemblymutate CATGCTTTGGAACTTTCCCCTGTACCCTGCCTAATGGACCCAGTAAGGTAACTACCCGGG ************* ******* ****** ***** ************************* HS_haplotype1 CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT HS_haplotype2 CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT HS_assemblymutate CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT ************************************************************ HS_haplotype1 TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT HS_haplotype2 TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT HS_assemblymutate TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT ************************************************************ HS_haplotype1 GGGAAGAGCCTACATGGCCAGACAGGTGCGTTTGATTACAGTAGGCCCATTTGTAGAAAA HS_haplotype2 GGGAAGAGCCTACATGGCCAGACAGGTGGGTTTGATTACAGTAGGCCCATTTGTAGAAAA HS_assemblymutate GGGAAGAGCCTACATGGCCAGACAGGTGCGTTTGATTACAGTAGGCCCATTTGTAGAAAA **************************** ******************************* HS_haplotype1 ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCGAGCGGCACAAATGGAGTTT HS_haplotype2 ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCCAGCGGCACAAATGGAGTTT HS_assemblymutate ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCCAGCGGCACAAATGGAGTTT **************************************** ******************* HS_haplotype1 TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCGCGCAGGAATCACCTTTGCTTCTT HS_haplotype2 TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCTCGCAGGAATCACCTTTGCTTCTT HS_assemblymutate TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCGCGACGGAATCACCTTTGCTTCTT ************************************ ** ******************* HS_haplotype1 TCTATAAAAAATAAGCTTCTCAGAACAATTAATTTATATGCGAGGATGGTGAGAGACAGT HS_haplotype2 TCTATAAAAAATAAGCTTCTCAGAACAATTAATTTTTATGCGAGGATGGTGAGAGACAGT HS_assemblymutate TCTATAAAGAATAAGCTTGTCAGAACAATTAATTTTTATGCGAGGATGGTGAGAGACTGT ******** ********* **************** ********************* ** HS_haplotype1 GTCCTGTGGAAGACGTCTCAGGGAAAGATTTCAGTAATCCTGAAGCAAGGTGTTGCAGGC HS_haplotype2 GTGCTGTGAAAGACGTCTCAGGGAAAGATTTCAGTAATCCTGAAGCAAGGTGTTGCAGGC HS_assemblymutate GTCCTGTGGAAGACGTCTCAGGGAAATATTTCAGTAATCCTGAAGCAAGTTGTTGCAGGC ** ***** ***************** ********************** ********** HS_haplotype1 GTGGTTTTTGGAAGGTGAATCATAGCAAGAGAATTCTGGAGACACACAGAACTTGAGGCT HS_haplotype2 GTGGTTTTTGGAAGGTGAATCATAGCAAGATAATTCTCGAGCCACACAGAACTTGAGGCT HS_assemblymutate GTGGTTTTTGGAAGGTGAATCATAGCATGATAATTCTCGAGCCACACAGAACTTGGGGGT *************************** ** ****** *** ************* ** * HS_haplotype1 TACCTTTTTTGTGAACAGATCTGCTGGGAGAGGCCACAACTAGATAGCCAAACATTCTCA HS_haplotype2 TACCTTTTTCGTGAACAGATCTGCTGGGAGAGGCCACAACTAGATAGCCAAACATCCTCA HS_assemblymutate TACCTTTTTTGGGAACAGATCTGCTGGGAGAGGCCACAGCTAGATAGCCAAACATTCTCT ********* * ************************** **************** *** HS_haplotype1 AAAATGGTGTGTGCACTAGCCCCTAGTTAGGTGGTTCAGTCAGTTTATCACCGTGATCTC HS_haplotype2 AAAATGGTGTGTGCACTAGCCCCTAGTCAGGTGGTTCAGTCAGTTTATCACCATGATCTC HS_assemblymutate AAAATGGTGTGTGCACTAGCCCCTAGTCAGGTGGTTCAGTCAGTTTATCACCATGATCTC *************************** ************************ ******* HS_haplotype1 TAATTTGGGAGGAGACAAATAGTCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT HS_haplotype2 TAATTTGGGAGGAGACAAATAATCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT HS_assemblymutate TAATTTGGGAGGAGACAAATAGTCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT ********************* ************************************** HS_haplotype1 CTACAGTGTTACCGGTTTTTGAGACTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG HS_haplotype2 CTACAGTGTTACCGGTTTTTGAGATTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG HS_assemblymutate CTACAGTGTTACCGGTTTTTGAGATTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG ************************ *********************************** HS_haplotype1 GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT HS_haplotype2 GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT HS_assemblymutate GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT ************************************************************ HS_haplotype1 TTTACCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT HS_haplotype2 TTTAGCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT HS_assemblymutate TTTAGCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT **** ******************************************************* HS_haplotype1 ATGAACATTGTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG HS_haplotype2 ATGAACATTTTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG HS_assemblymutate ATGAACATTGTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG ********* ************************************************** HS_haplotype1 TGAGCCAAATGAATATTTATTGGGGTGGGATTTGATTCTTTGCTCTTTTTCACACAAAAG HS_haplotype2 TGCGCCAAATGAATATTTATTGGGGTGGGAATTGATTCTTTGCTCTTGTTCACACAAAAG HS_assemblymutate TGCGCCAAATGAATATTTATTGGGGTGGGAATTGATTCTTTGCTCTTGTTCACACAAAAG ** *************************** **************** ************ HS_haplotype1 TACTAAAAGAACCATGCTTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT HS_haplotype2 TACTAAAAGAACCATGATTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT HS_assemblymutate TACTAAAAGAACCATGCTTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT **************** ******************************************* HS_haplotype1 CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC HS_haplotype2 CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC HS_assemblymutate CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC ************************************************************ HS_haplotype1 AATATTATATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAATTACACTCCC HS_haplotype2 AATATTATATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAAATACACTCCC HS_assemblymutate AATTTTACATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAATTACACTCCC *** *** ****************************************** ********* HS_haplotype1 TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG HS_haplotype2 TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG HS_assemblymutate TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG ************************************************************ HS_haplotype1 CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGATGGGCCCAGCAAG HS_haplotype2 CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGCTCGGCCCAGCAAG HS_assemblymutate CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGATGGGCCCAGCAAG ********************************************** * *********** HS_haplotype1 ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGTGTCCATTCCAGGGACTCAAAGTAA HS_haplotype2 ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGGGTCCATTCCAGGGACTCAAAGTAA HS_assemblymutate ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGGGTCCATTCCAGGGACTCAAAGTAA *********************************** ************************ HS_haplotype1 TGACTGGTCTCTCCAACAGGAGGAAGCAATTAGCTACATATCTTCACGACTTAATTTGGA HS_haplotype2 TGACTGGTCTCTCCAACAGGCGGAAGCAATTAGCTACATATCTTCAGGACTTAATTTGGA HS_assemblymutate TGACTGGTCTCTCCAACAGGAGGAAGCAATTAGCTACATATCTTCACGACTTAATTTGGA ******************** ************************* ************* HS_haplotype1 AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA HS_haplotype2 AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA HS_assemblymutate AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA ************************************************************ HS_haplotype1 AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCCTTT HS_haplotype2 AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCTTTT HS_assemblymutate AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCCTTT ******************************************************** *** HS_haplotype1 TAGGAGGACAGGCATATTCAGAGCAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG HS_haplotype2 TAGGAGGACAGGCATATTCAGAGGAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG HS_assemblymutate TAGGAGGACAGGCATATTCAGAGGAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG *********************** ************************************ HS_haplotype1 AGAATCTCAGAGTTTTTGGGGGGTTTATCCTTCTACTTTTTTAGAACTCATTCAGTAGAG HS_haplotype2 AGAATCTCAGAGTTTTTGGGGGGTTTATCCTTCTACTTTTTTAGAACTCATTCAGTAGAG HS_assemblymutate AGAATCTCAGAGTTTTTGGGGGGTTTATCATTCTACTTCTTTAGAACTCACTCAGTAGAG ***************************** ******** *********** ********* HS_haplotype1 TCCAGGACAAGCAATAAGGGTGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT HS_haplotype2 TCCAGGACAAGCAATAAGGGTGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT HS_assemblymutate TCCAGGACAAGCAATAAGGGAGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT ******************** *************************************** HS_haplotype1 CCTGATACAAGGAAGCTTGGGTCTTAAGGAACTCTTCTGCCCGGGCCCGAAAATATTTAT HS_haplotype2 CCTGATACAAGGAAGCTTGGGTCTTAAGTAACTCTTCTGCCCGGGCCCGAAAATATTTAT HS_assemblymutate CCTGAAACGAGGAAGCTTGGGTCTCAAGGAACTCTTCTGCCCGGGCCCGAAAATATTTAT ***** ** *************** *** ******************************* HS_haplotype1 CTACTCCTGGTCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGTATTAACTATTATATA HS_haplotype2 CTACTCCTGGTCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGAATTAACTATTATATA HS_assemblymutate CTACTCCTTATCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGAATTAACTATTATATA ******** ********************************** *************** HS_haplotype1 TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGAGGCCATTCCTGTGTCTTTCCAT HS_haplotype2 TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGCGGCCATTCCTGTGTCTTTCCAT HS_assemblymutate TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGAGGCCATTCCTGTGTCTTTCCAT ************************************* ********************** HS_haplotype1 ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC HS_haplotype2 ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC HS_assemblymutate ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC ************************************************************ HS_haplotype1 TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT HS_haplotype2 TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT HS_assemblymutate TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT ************************************************************ HS_haplotype1 GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA HS_haplotype2 GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA HS_assemblymutate GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA ************************************************************ HS_haplotype1 GATGCGCCCCTCATTATAATTATCCCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA HS_haplotype2 GATGCGCCCCTCATTATAAAAATACCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA HS_assemblymutate GATGCGCCCCTCATTATAATTATCCCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA ******************* ** ************************************ HS_haplotype1 CCGTGCCAGGAGGGCGTAAATTGTGGGAATAGGTGTGCTGAGACAGCAAGAGACAACTTG HS_haplotype2 CCGTGCCAGGAGGGCGTAAATTGTGGGAATGGGTGTGATGAGACAGCAAGAGACAACTTG HS_assemblymutate CCGTGCCAGGAGGGCGTAAATTGTGGGAATGGGTGTGATGAGACAGCAAGAGACAACTTG ****************************** ****** ********************** HS_haplotype1 TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATACAGCTGAGCTGACTCATTTTTCAT HS_haplotype2 TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATACATCTGAGCTGACTCATTTTTCAT HS_assemblymutate TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATAAAGCCGAGCTGACTCATTTTTCAT ************************************ * * ******************* HS_haplotype1 GTCCTCAAAGTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGTCAGGCGGC HS_haplotype2 GTCCTCAAACTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGCGAGGCTGC HS_assemblymutate GTCCTCAAACTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGCGAGGCTGC ********* ***************************************** **** ** HS_haplotype1 TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGAATGATTGTATGAATAA HS_haplotype2 TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGGATGATTGTATGAATAA HS_assemblymutate TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGAATGATTGTATGAATAA ******************************************* **************** HS_haplotype1 ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT HS_haplotype2 ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT HS_assemblymutate ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT ************************************************************ HS_haplotype1 TTTTAATCCCTGGGATGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA HS_haplotype2 TTTTAATCCCTGGGAGGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA HS_assemblymutate TTTTAATCCCTGGGATGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA *************** ******************************************** HS_haplotype1 CTCTTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGGCCT HS_haplotype2 CTATTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGTCCT HS_assemblymutate CTATTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGTCCT ** ***************************************************** *** HS_haplotype1 CAGGTAGCCACTATTTTTCCTCCCTAAGCTGGAATTCTAAAGGTCTTCGATTTACTGTGA HS_haplotype2 CAGGTAGCCGCTATTTTTCCTCCCTAAACTGGAATTCTAAAGGTCTTCGATTTACTGTGA HS_assemblymutate CAGGTAGCCGCTATTTTTCCTCCCTAAGCTGGAATTCTAAAGGTCTTCGATTTACTGTGA ********* ***************** ******************************** HS_haplotype1 GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA HS_haplotype2 GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA HS_assemblymutate GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA ************************************************************ HS_haplotype1 TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTGGGAGGTCTCCCC HS_haplotype2 TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTCGGAGGTCTCCCC HS_assemblymutate TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTGGGAGGTCTCCCC *********************************************** ************ HS_haplotype1 ACTAAATGGAACTATTTTATGCTTGAGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT HS_haplotype2 ACTAGATGGAACTATTTTATACTTGAGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT HS_assemblymutate ACTAAATGGAACTATTTTATACTTGTGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT **** *************** **** ********************************** HS_haplotype1 TTATAGCCTGGGAGAGATGATGGTCTTCTCCTGACAGATCACCCTTTCATGATTATACAA HS_haplotype2 TTATAGCCTGGGAGAGATGAAGGTCTTCTCCTGAGAGATCACCCTTTCATGATTATACGA HS_assemblymutate TTATAGCCTGGGAGAGATGATGGTCTTCTCCTGACAGATCACCCTTTCATGATTATACAA ******************** ************* *********************** * HS_haplotype1 ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG HS_haplotype2 ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG HS_assemblymutate ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG ************************************************************ HS_haplotype1 AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT HS_haplotype2 AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT HS_assemblymutate AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT ************************************************************ HS_haplotype1 CTGTCCAACATGATAGCTCTCTGTCATAGTTTCTTTTTTAATCTATGGGGCTGAAGAAAA HS_haplotype2 CTGTCCAACATGATAGCCCTCTGTCATAGTTTCTTTTTTGATCTATGGGGCTGATGAAAA HS_assemblymutate CTGTCCAACATGATAGCCCTCTGTCATAGTTTCTTTTTTGATCTATGGGGCTGATGAAAA ***************** ********************* ************** ***** HS_haplotype1 CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT HS_haplotype2 CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT HS_assemblymutate CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT ************************************************************ HS_haplotype1 TAGTAGCTGAGTGTTTGAAGCAAACACAGACTGTGTAGCCGAGATTTTTCTTCCTGTGTG HS_haplotype2 TAGTAGCTTAGTGTTTGAAGCAAACACAGATTGTGTAGCCGAGATTTTTCTTCCTGTATG HS_assemblymutate TAGTAGCTTAGTGTTTGAAGCAAACACAGATTGTGTAGCCGAGATTTTTCTTCCTGTATG ******** ********************* ************************** ** HS_haplotype1 GCAGCAAAATAAGTGATAGTAGATTGGAACCCGCCTGGACTCTTTTTAAATGGGGGTCGC HS_haplotype2 GCAGCAAAATAACTGAGAGTAGATTGGAACCCGCCTGGACTCTGTTTAAATGGGGGTCGC HS_assemblymutate GCTGCAAAACAAGTGATAGTAGATTGGAACCCGCCTGGACTCTTTTTAAATGGGGGTCGC ** ****** ** *** ************************** **************** HS_haplotype1 CCACGCATGCGCCGCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT HS_haplotype2 CCACGCATGCGCCGCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT HS_assemblymutate CTACGCATGCGCCTCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT * *********** ********************************************** HS_haplotype1 AGTTTTGTCTATGCAAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC HS_haplotype2 AGTTTTGTCTATGACAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC HS_assemblymutate AGTTTTGTCTATGCAAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC ************* ********************************************* HS_haplotype1 TATGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA HS_haplotype2 TTTGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA HS_assemblymutate TTTGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA * ********************************************************** HS_haplotype1 CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTAGTGTGTTCAGCAATCCCA HS_haplotype2 CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTACTTTGTTCAGTAATCCCA HS_assemblymutate CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTAGTGTGTTCAGCAATCCCA ****************************************** * ******* ******* HS_haplotype1 GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA HS_haplotype2 GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA HS_assemblymutate GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA ************************************************************ HS_haplotype1 TTATTTTGAACCTGGAGAGAACACCTGGAAAAGTGGAAACATTCCCAGGAGGGAACATCT HS_haplotype2 TTATTTTGAACCTGGAGAGAAGACCTGGAAAAGTGGAAACATTCCCAGGAGGAAACATCT HS_assemblymutate TTATTTTGAACCTGGAGAGAACACCTGGAAAAGTGGAAACATTCCCAGGAGGGAACATCT ********************* ****************************** ******* HS_haplotype1 GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA HS_haplotype2 GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA HS_assemblymutate GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA ************************************************************ HS_haplotype1 AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA HS_haplotype2 AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA HS_assemblymutate AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA ************************************************************ HS_haplotype1 TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT HS_haplotype2 TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT HS_assemblymutate TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT ************************************************************ HS_haplotype1 TGAGCTCACCTTTATCTACCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA HS_haplotype2 TGAGCTCACCTTTATCTACCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA HS_assemblymutate TGAGCTCACCTGTATCTTCCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA *********** ***** ****************************************** HS_haplotype1 TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG HS_haplotype2 TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG HS_assemblymutate TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG ************************************************************ HS_haplotype1 CTTATTCCACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA HS_haplotype2 CCTATTCGACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA HS_assemblymutate CTTATTCCACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA * ***** **************************************************** HS_haplotype1 AGAAATACAAAGGGGGACGAGGAGTGATGCCACCCGGGCAGATTCTGGAGACTACACATG HS_haplotype2 AGAAATACAAAGGGGGACGAGGAGTGATGCCACCCGGGCAGATTCTGGAGACTACACATG HS_assemblymutate AGAAATACAAAGGGGGACGACGAGTGTTGCCACCCTGGCAGATTCTGGCGACTACACATG ******************** ***** ******** ************ *********** HS_haplotype1 ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC HS_haplotype2 ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC HS_assemblymutate ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC ************************************************************ HS_haplotype1 TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA HS_haplotype2 TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA HS_assemblymutate TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA ************************************************************ HS_haplotype1 AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC HS_haplotype2 AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC HS_assemblymutate AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC ************************************************************ HS_haplotype1 TACCTGTAGCCCCACCATATGGTGCGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA HS_haplotype2 TACCTGTAGCACCACCATATGGTGTGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA HS_assemblymutate TACCTGTAGCACCACCATATGGTGTGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA ********** ************* *********************************** HS_haplotype1 GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT HS_haplotype2 GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT HS_assemblymutate GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT ************************************************************ HS_haplotype1 GGCCATCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACAGCTGTT HS_haplotype2 GGCCTTCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACGGCTGTT HS_assemblymutate GGCCTTCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACGGCTGTT **** ************************************************ ****** HS_haplotype1 ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA HS_haplotype2 ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA HS_assemblymutate ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA ************************************************************ HS_haplotype1 AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT HS_haplotype2 AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT HS_assemblymutate AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT ************************************************************ HS_haplotype1 ACTGGGAAAGGGAATGTAAAGGAGATATCTCAAATTACAAGAGGCAGGAGGCCGGTAAAA HS_haplotype2 ACTGGGAACGGAAATGTAAAGGAGATATCTCAAAAAACAAGAGGCAGGAGGCCGGTAAAA HS_assemblymutate ACTGGGAAAGGGAATGTAAAGGAGATATCTCAAATTACAAGAGGCAGGAGGCCGGTAAAA ******** ** ********************** ************************ HS_haplotype1 GTGTGATCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA HS_haplotype2 GTGTGGTCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA HS_assemblymutate GTGTGATCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA ***** ****************************************************** HS_haplotype1 TGAATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTCGCCTAGAGT HS_haplotype2 TGCATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTGGCCTAGAGT HS_assemblymutate TGAATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTCGCCTAGAGT ** *********************************************** ********* HS_haplotype1 GAGTGGTCTGCAGCGCCACATCAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC HS_haplotype2 GAGTGGTCTGCAGCGCCACATAAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC HS_assemblymutate GAGTGGTCTGCAGCGCCACATAAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC ********************* ************************************** HS_haplotype1 TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAAATA HS_haplotype2 TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAATTA HS_assemblymutate TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAATTA ********************************************************* ** HS_haplotype1 ATTATGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACTTTGGGTGCA HS_haplotype2 ATTCTGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACTTTGGGTGCA HS_assemblymutate ATTCTGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACCTTGGGTGCA *** ********************************************** ********* HS_haplotype1 GCCGAAGTTTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG HS_haplotype2 GCCGAAGTTTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG HS_assemblymutate GCTGAAGTCTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG ** ***** *************************************************** HS_haplotype1 AAGGGAGAAAAATACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC HS_haplotype2 AAGGGAGAAAATTACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC HS_assemblymutate AAGGGAGAAAATTACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC *********** ************************************************ HS_haplotype1 GTGAGCCCCTCCCCCTTTAATACATTTCGTTTCAAAATATTTGCTGGGTTCACTCCAGGT HS_haplotype2 GTGAGCCCCTCCCCCTTTAATACATTTTGTTTCAAAATATTTGCTGGGTTCACTCCAGGT HS_assemblymutate GTGAGCCCCTCCCCCTTTAATACATTTCGTTTCAAAATATTTGCTGGGTTCACTCCAGGT *************************** ******************************** HS_haplotype1 TTATGACCATGAGATCCAAGTCCCGCAGGCAGGCGCCTCAGCACTCTGTATAACTGATCC HS_haplotype2 TTATGACGATGAGATCCAATTCCCGCAGGCAGGCGCCTCAGCACTCTATATAACTGATCC HS_assemblymutate TTATGACGATGAGATCCAATTCCCGCAGGCAGGCGCCTCAGCACTCTATATAACTGATCC ******* *********** *************************** ************ HS_haplotype1 CAGAAGCTAACTTCATGATGGGATATCCCTTCATTCATCACATACGCTAGCTGGGCCCAC HS_haplotype2 CAGAAGCTTACTTCATGATGGGATATCGCTTCATTCATCACATACGCTAGCTGGGCCCAC HS_assemblymutate CAGAAGCTAACTTCATGATGGGATATCCCTTCATTCATCACATACGCTAGCTGGGCCCAC ******** ****************** ******************************** HS_haplotype1 CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT HS_haplotype2 CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT HS_assemblymutate CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT ************************************************************ HS_haplotype1 GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGTG HS_haplotype2 GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGGG HS_assemblymutate GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGTG ********************************************************** * HS_haplotype1 AGGGAGCCACTGGATGTGATATGTTACTTACTTCCCTTTTTTAAATTGGCTCCATTAGAT HS_haplotype2 AGGGACCCACTGGATGTGATATGTTACTTACTTCCCTTTTTTAAATTGGCTCCATTAGAT HS_assemblymutate AGCGACCCACTGGATGTGATATGTTACTTTCTTCCCTTTTTTAAATTGGCTCCATTAGAT ** ** *********************** ****************************** HS_haplotype1 TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTG HS_haplotype2 TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTT HS_assemblymutate TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTG *********************************************************** HS_haplotype1 TCAGATTTCCCTGTCTACCAAATGGCAGATAAATAAGAGGGGAAAACTGGAGTAATTGGT HS_haplotype2 TCAGATTTCCCTGTCTACGAAATGGCAGATAAATAAGAGGGGAAAACTCGAGTAATTGGT HS_assemblymutate TCAGATTTCCCTGTCTACGAAATGGCAGATAAATAAGAGGGGAAAACTCGAGTAATTGGT ****************** ***************************** *********** HS_haplotype1 TAAGGGAGGCATGGCGTGAAAATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA HS_haplotype2 TAAGGGAGGCATGGCGTGAATATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA HS_assemblymutate TAAGGGAGGCATGGCGTGAATATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA ******************** *************************************** HS_haplotype1 CAATGTGTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA HS_haplotype2 CAATGTCTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA HS_assemblymutate CAATGTCTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA ****** ***************************************************** HS_haplotype1 TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGCGAGCTTACAACGGCAGCCTCT HS_haplotype2 TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGGGAGCTTACAACGGCAGCCTCT HS_assemblymutate TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGCGAGCTTACAACGGCAGCCTCT ************************************** ********************* HS_haplotype1 TTTTAGTTTGTCACTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC HS_haplotype2 TTTTAGTTTGTCGCTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC HS_assemblymutate TTTTAGTTTGTCGCTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC ************ *********************************************** HS_haplotype1 TGCTCTGCCTAAGTAAAAATCACCCCAACCCACACATATGCACCGGCACGTTTTTTAGTA HS_haplotype2 TGCTCTGCCTAAGTAAAAATCACCCCAAGCCACACATATGCACCGGCACGTTTTTTAGTA HS_assemblymutate TGCTCTGCCTAAGTAAAAATCACCCCAACCCACACTTACGCACCGGCACGTTTTTTAGTA **************************** ****** ** ********************* HS_haplotype1 GTTTTACACATTTGAGATCGCACAGCTTTCATTATAGCATAGGAAGGTGCTATACAAAGG HS_haplotype2 GTTTTACACATTTGAGATCGCACAGCTCTCATTATAGCATAGGAAGGTGCTATACAAAGG HS_assemblymutate GTTTTACACATTTGAGATCGCACAGCTCTCATTATAGCATAGGAAGGTGCTATACAAAGG *************************** ******************************** HS_haplotype1 GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT HS_haplotype2 GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT HS_assemblymutate GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT ************************************************************ HS_haplotype1 CAGTTGCTTGATGTATAACAAGTGGAAGCAAAAACTTGTGTGAACCTCCTCAGCTCCAGA HS_haplotype2 CAGTTGCTTGATGTATAGCAAGTGGAAGCAGAAACTTGTGTGAACCTCCTCAGCTCCAGA HS_assemblymutate CAGTTGCTTGATGTATAGCAAGTGGAAGCAGAAACTTGTGTGAACCTCCTCAGCTCCAGA ***************** ************ ***************************** HS_haplotype1 GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGGGAAC HS_haplotype2 GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGACAAC HS_assemblymutate GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGGGAAC ******************************************************* *** HS_haplotype1 TCAAGGACAAGTTTGAAGAGTTTCCTTCATCACAGCAAGTGTTAAATTCACATTTTTGTC HS_haplotype2 TCAAGGACAAGTTTGAAGAGTTTCCTTCACCACAGCAAGTGTTAAATTCACATTTTTGTC HS_assemblymutate TCAAGGACAAGTTTGAAGAGTTTCCTTCACCACAGCAAGTGTTAAATTCACATTTTTGTC ***************************** ****************************** HS_haplotype1 TTGTAATACCATGCTCTACTTCACCTGGGCCTCCCCGATATCTGCAGTCTGAGGAGCCAG HS_haplotype2 TTGCAATACCATGCTCTACTTCACCTGGGCCTCCCCGATATCTGCAGTCTGATGAGCCAG HS_assemblymutate TTGTAATACCATGCTCTACTTCACCTGGGCCTCCCCTATATCTGCAGGCTGAGGAGCCAG *** ******************************** ********** **** ******* HS_haplotype1 TTTGTGGTTGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC HS_haplotype2 TTTGTGGTTGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC HS_assemblymutate TTTGAGGTCGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC **** *** *************************************************** HS_haplotype1 CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACAGCCTACAAC HS_haplotype2 CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACTGCCTACAAC HS_assemblymutate CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACAGCCTACAAC ************************************************** ********* HS_haplotype1 GTACCTTGCCCGACCTTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACAATAGA HS_haplotype2 GTACCTTGTCCGACCTTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACCATAGA HS_assemblymutate GTACCTTGTCCGACATTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACCATAGA ******** ***** *************************************** ***** HS_haplotype1 GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTCGATCATTTCTGCC HS_haplotype2 GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTGGATCATTTCTGCC HS_assemblymutate GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTCGATCATTTCTGCC ********************************************** ************* HS_haplotype1 ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAGCATAAATGCATCCTTC HS_haplotype2 ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAACATAAATGCATCCTTC HS_assemblymutate ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAGCATAAATGCATCCTTC ******************************************* **************** HS_haplotype1 CAAACTAGATCAAGCAGCTAGATCACTTTACTGTGAATTCCAACCTATATGAAGGACAAA HS_haplotype2 CAAACTAGAGCAAGCAGCTAGATCCCTTGACTGTGAATTCCTACCTATATGAAGGACAAA HS_assemblymutate CAAACTAGATCAAGCAGCTAGATCACTTTACTGTGAATTCCAACCTATATGAAGGACAAA ********* ************** *** ************ ****************** HS_haplotype1 TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT HS_haplotype2 TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT HS_assemblymutate TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT ************************************************************ HS_haplotype1 GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT HS_haplotype2 GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT HS_assemblymutate GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT ************************************************************ HS_haplotype1 CAGCCTGGCAGATGGGCTCTGAACAACTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT HS_haplotype2 CAACCTGGCAGATGGGCTCTGAACATCTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT HS_assemblymutate CAACCTGGCAGATGGGCTCTGAACATCTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT ** ********************** ********************************** HS_haplotype1 ACTGTTTCCTGAGGTGTGCCTTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT HS_haplotype2 ACTGTTTCCTGAGGTCTGCCCTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT HS_assemblymutate ACTGTTTCCTGAGGTGTGCCTTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT *************** **** *************************************** HS_haplotype1 AAGAGGAAATCAACCCTCCTCAGGTGTGAGTATAGAGACGCAGCTGAAAAATAATGCTTC HS_haplotype2 AAGAGGAAATCAACCCTCCTCAGGTGTGTGTATAGAGACGCAGCTGAAAAATAATGCTTC HS_assemblymutate AAGAGGAAATCAACCCTCCTCAGGTGTGTGTATAGAGACGCAGCTGAAAAATAATGCTTC **************************** ******************************* HS_haplotype1 ACGACGCCTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT HS_haplotype2 ACGACGACTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT HS_assemblymutate ACGACGCCTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT ****** ***************************************************** HS_haplotype1 TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC HS_haplotype2 TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC HS_assemblymutate TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC ************************************************************ HS_haplotype1 CTGTAAAGTGAATTTGGAGCAGCAAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT HS_haplotype2 CTGTAAAGTGAATTTGGAGCAGCTAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT HS_assemblymutate CTGTAAAGTGAATTTGGAGCAGCAAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT *********************** ************************************ HS_haplotype1 TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA HS_haplotype2 TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA HS_assemblymutate TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA ************************************************************ HS_haplotype1 TGGTATGGCTGCTGTGTCCCGGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA HS_haplotype2 TGGTATGGCTGCTGTGTCCCCGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA HS_assemblymutate TGGTATGGCTGCTGTGTCCCGGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA ******************** *************************************** HS_haplotype1 GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAACTTTTTAAC HS_haplotype2 GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAAATTTTTAAC HS_assemblymutate GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAACTTTTTAAC *************************************************** ******** HS_haplotype1 GAAGCATGCAGAGAAGAAAGGGGGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT HS_haplotype2 GAAGCATGCAGAGAAGAAAGGGAGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT HS_assemblymutate GAAGCATGCAGAGAAGAAAGGGGGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT ********************** ************************************* HS_haplotype1 TTTTGCCACCTCTGGACTTTAGACAAAAACTCCGAGGGAGTCCAATCCACGTGATGGATT HS_haplotype2 TTTTGCCACCTCTCGACTTTAGACAAAAACTCCGAGGGAGCCCAATCCACGTGATGGATT HS_assemblymutate TTTTGCCACCTCTCGACTTTAGACAAAAACTCCGAGGGAGCCCAATCCACGTGATGGATT ************* ************************** ******************* HS_haplotype1 GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCACGTACTTCATCAATT HS_haplotype2 GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCAAGTACTTCATCAATA HS_assemblymutate GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCACGTACTTCATCAATT ********************************************* ************* HS_haplotype1 TCTTTGTAACATCACCAAGTATCTTGTTCTCAGTTGCTTCTAAGTGAACTTACAGAATCA HS_haplotype2 TCTTTGTAACATCACCAAGTATCTTGTCCTCAGTTGCTTCTAAGTGAACTTACATAATCA HS_assemblymutate TCTTTGTAACATCACCAAGTATCTTGTCCTCAGTTGATTCTAAGTGAACTCACATAATCA *************************** ******** ************* *** ***** HS_haplotype1 AATTAACTTCAGCCTGGCAACATGTGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA HS_haplotype2 AATTAACTTCAGCCTGGCAACATATGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA HS_assemblymutate AATTAACTTAAGCCTGGCAACATGTGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA ********* ************* ************************************ HS_haplotype1 TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC HS_haplotype2 TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC HS_assemblymutate TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC ************************************************************ HS_haplotype1 ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGCAATCCTTCTGGACTTAA HS_haplotype2 ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGAAATCCTTCTGGACTTAA HS_assemblymutate ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGCAATCCTTCTGGACTTAA ****************************************** ***************** HS_haplotype1 TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG HS_haplotype2 TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG HS_assemblymutate TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG ************************************************************ HS_haplotype1 TGGAGTTACATGGTGCACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC HS_haplotype2 TGGAGTGACATGGTGAACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC HS_assemblymutate TGGAGTTACATGGTGCACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC ****** ******** ******************************************** HS_haplotype1 TGGGCTCGGGGCCCCTAACTTGTGGTGTAAAATAATTTTTAAAAAAAATCTTCTCCTGCC HS_haplotype2 TGGGCTCGGGGCCTCTACCTTGTGGTGTAAAATAATTTTTAAAAATAATGTTCTCGTGCC HS_assemblymutate TGGGCTCGGGGCATCTACCTAGCGGTGTAAAATAATTTTTAAAAATGATGTTCTCGTGCC ************ *** ** * ********************** ** ***** **** HS_haplotype1 CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTTATTCGTGGCTGGAC HS_haplotype2 CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTAATTCGTGGCTGGAC HS_assemblymutate CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTTATTCGTGGCTGGAC ********************************************* ************** HS_haplotype1 AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGCTTGCTTCCCAAA HS_haplotype2 AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGATTGCTTCCCAAA HS_assemblymutate AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGATTGCTTCCCAAA *********************************************** ************ HS_haplotype1 TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG HS_haplotype2 TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG HS_assemblymutate TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG ************************************************************ HS_haplotype1 CAAAAAGAAATTACCCTATCATGGTCTTCAAAACTTCCTCTAGACTCCTTCTGCCTTCCA HS_haplotype2 CAAAAAGAAATTACCCTATCATAGTCCTCAAAACTGCCTCTAGACTACTTCTGCCTTCCA HS_assemblymutate CAAAAAGAAATTACCCTATCATAGTCCTCAAAACTGCCTCTAGACTACTTCTGCCTTCCA ********************** *** ******** ********** ************* HS_haplotype1 TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA HS_haplotype2 TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA HS_assemblymutate TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA ************************************************************ HS_haplotype1 GGGACCAGATACCCTACTCGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC HS_haplotype2 GGGACCAGCTACCCTACTAGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC HS_assemblymutate GGGACCAGCTACCCTACTAGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC ******** ********* ***************************************** HS_haplotype1 TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG HS_haplotype2 TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG HS_assemblymutate TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG ************************************************************ HS_haplotype1 CCACCCGTGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT HS_haplotype2 CCACCCGGGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT HS_assemblymutate CCACCCGGGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT ******* **************************************************** HS_haplotype1 TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA HS_haplotype2 TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA HS_assemblymutate TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA ************************************************************ HS_haplotype1 GATTGGACTACCTAAGTCATCAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC HS_haplotype2 GATTGGACTACCTAAGTGAACAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC HS_assemblymutate GATTGGACTACCTAAGTGAACAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC ***************** * **************************************** HS_haplotype1 TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTGTATGCAAACCCCGCCGGAAGTTGACT HS_haplotype2 TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTCTATGCAAACCCCGCCGGAAGTTGACT HS_assemblymutate TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTGTATGCAAACCCCGCCGGAAGTTGACT ********************************* ************************** HS_haplotype1 GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT HS_haplotype2 GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT HS_assemblymutate GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT ************************************************************ HS_haplotype1 GATCACAAAATATATTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG HS_haplotype2 GATTACAAAATATATTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG HS_assemblymutate GATCTCAAAATATGTTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG *** ******** ********************************************** HS_haplotype1 CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT HS_haplotype2 CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT HS_assemblymutate CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT ************************************************************ HS_haplotype1 TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAAATTCTTAATAAGGTTTGACT HS_haplotype2 TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAAATTCTTAATAAGGTTTGACT HS_assemblymutate TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAATTTCTTAGTAAGGTTTGACT **************************************** ****** ************ HS_haplotype1 GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC HS_haplotype2 GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC HS_assemblymutate GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC ************************************************************ HS_haplotype1 CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT HS_haplotype2 CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT HS_assemblymutate CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT ************************************************************ HS_haplotype1 CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGGT HS_haplotype2 CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGCT HS_assemblymutate CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGCT ********************************************************** * HS_haplotype1 GGGTGAGGCCTTGTAGCTCTACACTTCTTTGTGTGACCAGGCTGCCGGGAGAGCTCACTT HS_haplotype2 GGGTGAGGCCTTGTAGCTCTACAGTTCTATGTGTGACCAGGCTGCCGGGAGAGCTCACTT HS_assemblymutate GGGTGAGGCCTTGTAGCTCTACACTTCTTTGAGTGACCAGGCTGCCGGGAGAGCTCACTT *********************** **** ** **************************** HS_haplotype1 CCATCAACATTTAGTAGGGGGGTTTACTGTGTAATACTCTTGACAATGAAATTGAAGGAT HS_haplotype2 CCATCAACATTTAGTAGGGGGGTTTACTGTGTAATACTCCTGACAATGAAATTGAAGGAT HS_assemblymutate CCATCAACATTTAGTAGGGGGGTTTACTGTGGAATATTCCTGACAATGAAATTGAAGGAT ******************************* **** ** ******************** HS_haplotype1 TTGTTTTAATGGAGCTCAAATAGACAGGGGTTCTGAAAGTTGCACTGATGCCGGAAAATG HS_haplotype2 TTGTTTTAATGGAGCTCAAATAGACAGGGGTTCTGAAAGTTGCACTGATGCCGGAAAATG HS_assemblymutate TCGTTTTAATGGAGCTCAAATAGACAGGGATTCTGAAAGTTGCACTGATGCCGGAAAATG * *************************** ****************************** HS_haplotype1 AAGCAAAATTAGCTGTGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGG HS_haplotype2 AAGCAAAATTAGCTGTGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGC HS_assemblymutate AAGCAAAATTTGCTGCGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGC ********** **** ******************************************* HS_haplotype1 TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCA HS_haplotype2 TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCT HS_assemblymutate TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCA *********************************************************** HS_haplotype1 GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC HS_haplotype2 GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC HS_assemblymutate GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC ************************************************************ HS_haplotype1 TGCTAATCTATCCAACATCATACAAAAGCACATATTAACTGACCTTCATCGAGATTCAAT HS_haplotype2 TGCTAATCTATCCAATATCATACAAAAGCACATATTAACTGACCTTTATCGAGATTCAAT HS_assemblymutate TGCTAATCTATCCAACATCATACAAAAGCACATATTAACTGACCTTCATCGAGATTCAAT *************** ****************************** ************* HS_haplotype1 AGCTATTAAACCCCCACAGAAGAAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT HS_haplotype2 AGCCATTAAACCCCCACAAAAGTAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT HS_assemblymutate AGCTATTAAACCCCCACAAAAGTAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT *** ************** *** ************************************* HS_haplotype1 GGGAAAGGGGTGGCCAGTGAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC HS_haplotype2 GGGAAAGGGGTGGCCAGTTAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC HS_assemblymutate GGGAAAGGGGTGGCCAGTGAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC ****************** ***************************************** HS_haplotype1 TAGGACTCTGCTATAGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA HS_haplotype2 TAGGACTCTGCTTTTGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA HS_assemblymutate TAGGACTCTGCTTTTGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA ************ * ********************************************* HS_haplotype1 GATATTAAATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGCG HS_haplotype2 GATATTACATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGCG HS_assemblymutate GATATTAAATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGTA ******* ************************************************** HS_haplotype1 GATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGACATACTC HS_haplotype2 AATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGAGATACTC HS_assemblymutate AATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGAGATACTC **************************************************** ****** HS_haplotype1 TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGAGTATAAGAAC HS_haplotype2 TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGAGGATAAGAAC HS_assemblymutate TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGTGCATAAGAAC ************************************************* * ******** HS_haplotype1 TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTAGCTTATCTGCAGCGTACATTCATTT HS_haplotype2 TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTCGCTTATCTGCAGCGTACAGTCATTT HS_assemblymutate TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTCGCTTATCTGCAGCGTACAGTCATTT ********************************** ****************** ****** HS_haplotype1 GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG HS_haplotype2 GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG HS_assemblymutate GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG ************************************************************ HS_haplotype1 CTGAGAATAAAGTCGTGCCATTCCATCAAACTTTTCACTTGTGCGACCCATTTTCCCTCC HS_haplotype2 CTGAGAATAAAGCCGTGCCATTCCATCAAACTTTTCACTTGTTCGACCCATTTTCCCTCC HS_assemblymutate CTGAGAATAAAGCCGTGCCATTCCATCAAACTTTTCACTTGTTCGACCCATGTTCCCCCC ************ ***************************** ******** ***** ** HS_haplotype1 CCTGGGAGGATAAAAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT HS_haplotype2 CCTGGGAGGATAAAAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT HS_assemblymutate CATGGGAGGAAAACAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT * ******** ** ********************************************** HS_haplotype1 CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT HS_haplotype2 CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT HS_assemblymutate CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT ************************************************************ HS_haplotype1 CTTCTACCTGTGATACTTTCCTGCATCCTCCCGATCACCTATCAACTGGAGCCAGTGTCC HS_haplotype2 CTTCTACCTGTTATACTTTCCTACATCCTCCCGATCACCTATCAACTGGCGCCAGTGTCC HS_assemblymutate CTTCTACCTGTGATACTTTCCTGCATCCTCCCGATCACCTATCAACTGGAGCCAGTGTCC *********** ********** ************************** ********** HS_haplotype1 CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGCCAGTGATGGATTTGAGCGC HS_haplotype2 CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGGCAGTGATGGATTTGAGCGC HS_assemblymutate CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGGCAGTGATGGATTTGAGCGC **************************************** ******************* HS_haplotype1 AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCCCCTGGATCTCCCGACCTGGTTT HS_haplotype2 AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCACCTGGATCTCCCGACCTGGTTT HS_assemblymutate AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCCCCTGGATCTCCCGACCTGGTTT ************************************* ********************** HS_haplotype1 CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATCAATTATCA HS_haplotype2 CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATTAATTATCA HS_assemblymutate CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATTAATTATCA *************************************************** ******** HS_haplotype1 TTTTTGACAAGTTCTCTTTAGAGGACAACATGATACAGGCAAAAAAAGTGTAAACAAAAC HS_haplotype2 TTTTTGACAAGTGCTCTGTAGAGGACAAGATGATACATGCAAAAAAAGTGTAAACAAAAC HS_assemblymutate TTTTTGACAAGTTCTCTTTAGAGGACAACATGATACAGGCAAAAAAAGTGTAAACAAAAC ************ **** ********** ******** ********************** HS_haplotype1 AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT HS_haplotype2 AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT HS_assemblymutate AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT ************************************************************ HS_haplotype1 TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCCTTTAGA HS_haplotype2 TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCATTTAGA HS_assemblymutate TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCCTTTAGA ***************************************************** ****** HS_haplotype1 AATTAGATGAGCTGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC HS_haplotype2 AATTAGATGAGATGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC HS_assemblymutate AATTAGATGAGATGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC *********** ************************************************ HS_haplotype1 AGGGCTCTGACCTTTTACAAGACATGAAGGGTGGTGCCCCTGATGGGTCTTTCCAGATCA HS_haplotype2 AGGGCTCTGACCTTTTACAAGACATGAAGGGAGGTGCCCCGGATGGGTCTTTCCAGATCA HS_assemblymutate AGGGCTCTGACCTTTTACAAGACATGAAGGGTGGTGCCCCTGATGGGTCTTTCCAGATCA ******************************* ******** ******************* HS_haplotype1 AGAGACCATCCAGGAGTTTTTTTAGCAGCAAGGCGATACATCACATAATATCAGTGCAAT HS_haplotype2 AGAGACCATCCAGGAGTTTTTTTAGCAGCAAGGCGATACATCACATAATATCAGTGCAAT HS_assemblymutate AGAGACCTTCCAGAAGTTTTTTTAGCAGCAAGGCGATACCTCACATAATATCAGTGCAAT ******* ***** ************************* ******************** HS_haplotype1 TCTCCTGCCATCATAGTAAAGAATCAAAAAGAGTGCCCCTTGAAAGAAGCACGCCCGTTC HS_haplotype2 TCTCCTCCCATCATAGTAAAGAATCAAAAAAAGTGCCCCTTGAAAGAAGCACGCCCGTTC HS_assemblymutate ACTCCTGCCATCATTGTAAAGAATCAAAAAGAGTGCCCCTTGAAAGAAGCACGCCCGTTC ***** ******* *************** ***************************** HS_haplotype1 ACCGTAAGGGGAGCCAACTTACATACTGTCAAGTTTGGCAGGATAGTAAGGACAAAGACT HS_haplotype2 ACCGTAAGGGGAGCCAACTTAGATACTGTCAAGTTTGGCAGGATAGTAAGGTCAAAGACT HS_assemblymutate ACCGTAAGGGGAGCCAACTTAGATACTGTCAAGTTTGGCAGGATAGTAAGGTCAAAGACT ********************* ***************************** ******** HS_haplotype1 GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGGGAAGTGC HS_haplotype2 GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGAGAAGTGC HS_assemblymutate GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGGGAAGTGC **************************************************** ******* HS_haplotype1 CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGGTGAATTTTGAGAGTTTGC HS_haplotype2 CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGGTGAATTTTGAGAGTTTGC HS_assemblymutate CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGCTGAATATTGAGAGTTTGC ***************************************** ***** ************ HS_haplotype1 TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA HS_haplotype2 TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA HS_assemblymutate TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA ************************************************************ HS_haplotype1 GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT HS_haplotype2 GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT HS_assemblymutate GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT ************************************************************ HS_haplotype1 TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT HS_haplotype2 TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT HS_assemblymutate TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT ************************************************************ HS_haplotype1 TTAAAAAGGGAGACCTCCTACTAAATAATGAAAGAAAAACACTGCAGTGATGAGGGCTGG HS_haplotype2 TTAAAAAGGGAGACCTCCTACTAAATAATGAAAGAAAAACACTGCAGTGATGAGGGCTGG HS_assemblymutate TTAAAAAGGGAGACCGCCTACTACATAAGGAAAGAAAAACACTGCAGTGATGAGGGCTGG *************** ******* **** ******************************* HS_haplotype1 TTTAAAAGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT HS_haplotype2 TTTAAATGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT HS_assemblymutate TTTAAAAGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT ****** ***************************************************** HS_haplotype1 GAAGCCAAACCAGGTCAGCGCTACTATTTAATATAATGGCATGGGGACCCTTTTGCTGTT HS_haplotype2 GAAGCCAAACCAGGTCAGCGCTACTTTTTAATATAATGGCATGGGGACCCTTTTGCTGTT HS_assemblymutate GAAGCCAAACCAGGTCAGCGCTACTTTTTAATATAATGGCATGGGGACCCTTTTGCTGTT ************************* ********************************** HS_haplotype1 CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAACAAAGTA HS_haplotype2 CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAAGAAAGTA HS_assemblymutate CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAACATAGTT ***************************************************** * *** HS_haplotype1 GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT HS_haplotype2 GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT HS_assemblymutate GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT ************************************************************ HS_haplotype1 TCGAAATCAGCCAGACATCCTAAGATTACAGACCGGGAGGCAGCTTATTTCTGTACAAGA HS_haplotype2 TCGAAATCAGTCAGACATCCTAAGATTACGGACCGGGAGGCAGCTTATTTCTGTACAAGA HS_assemblymutate TCGAAATCAGCCAGACATCCTAAGATTACAGACCGGGAGGCAGCTTATTTCTGTACAAGA ********** ****************** ****************************** HS_haplotype1 TCTTGGCTAACTAGAAGGGGAAGACCTCGCGTGAGATAAGCCTGGGCTCAAAGGAAGTGC HS_haplotype2 TCTTGGCTAACTAGAAGGGGAAGACCTCGCTTGAGATAAGCCTGGGCTCAAAGGAAGGGC HS_assemblymutate TCTTGGCTAACTAGAAGGGGAAGACCTCGCTTGAGATAAGCCTGGGCTCAAAGGAAGGGC ****************************** ************************** ** HS_haplotype1 AGTTTGAATAAGGGATTTTATTTTTTCATAAAAAGAAAACAGCCAATTTTGTTAATGAAG HS_haplotype2 AGTTTGAATAAGGGATTTTATTTTTTCATAAAATGAAAACAGCCAATTTTGTTAATGAAG HS_assemblymutate AGTTTGAATAAGGGATTTTATTTTTTCATAAAAAGAAAACAGCCAATTTTGTTAATGAAG ********************************* ************************** HS_haplotype1 GGGAGGCACGAGGGATACCAATGAGTTTCTTCGGCGCGGACATTCTACTTGTGTATTTAC HS_haplotype2 GGGAGGGCCGAGGGAAACCACTGAGTTGCTTCGGCGCGGACATTCTACTCTTGTATTTAC HS_assemblymutate GGGAGGGCCGAGGGAAACCACTGAGTTGCTTCGGCGCGGACATTCTACTCTTGTATTTAC ****** ******* **** ****** ********************* ********* HS_haplotype1 GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCAAGGCTCGGTGGTTCCAC HS_haplotype2 GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCCAGGCTCGGTGGTTCCAC HS_assemblymutate GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCAAGGCTCGGTGGTTCCAC ****************************************** ***************** HS_haplotype1 CCTGGGAGCTAAAATTAAGGATGGTGGATCCCATTGGGTAATTCCTGCCTGAGTTTTAAA HS_haplotype2 CCTGGGAGCTAAAATTAAGGATGGTGGATCACATTGGGTAATTCCTGCCTGAGTTTTAAA HS_assemblymutate CCTGGGAGCTAAAATTAAGGATGGTGGATCACATTGGGTAATTCCTGCCTGAGTTTTAAA ****************************** ***************************** HS_haplotype1 ATAAGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA HS_haplotype2 ATACGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA HS_assemblymutate ATAAGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA *** ******************************************************** HS_haplotype1 GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA HS_haplotype2 GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA HS_assemblymutate GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA ************************************************************ HS_haplotype1 GAGGCAGCAGGCCCCTGCCTTCCTCCTATATAAAACAGATTCTGAGAGAAAGCAAATGAT HS_haplotype2 GAGGCAGCAGGCCCCTGCCTTCCTCCTAGATAAAACAGATTCTGAGAGAAAGCAAATGAT HS_assemblymutate GAGGCAGCAGGCCCCTGCCTTCCTCCTATATAAAACAGATTCTGAGAGAAAGCAAATGAT **************************** ******************************* HS_haplotype1 TACAGCATTTTATAAGGACAAGGCTGGCAATTACATATGTATTTCTGGGTGGGATAGAGA HS_haplotype2 TACAGCATTTTAAAAGGACAAGGCTGGCAATCACATATGTATTTCTGGGTGGCATAGAGA HS_assemblymutate TACAGCATTTTAAAAGGACAAGGCTGGCAATCACATATGTATTTCTGGGTGGCATAGAGA ************ ****************** ******************** ******* HS_haplotype1 CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGAAAATTAGTGAGCCATGCCTT HS_haplotype2 CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGCAAATTAGTGAGCCATGCCTT HS_assemblymutate CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGAAAATTAGTGAGCCATGCCTT *************************************** ******************** HS_haplotype1 TTATTTAGAGCACAAACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG HS_haplotype2 TTATTTAGAGCACACACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG HS_assemblymutate TTATTTAGAGCACACACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG ************** ********************************************* HS_haplotype1 CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA HS_haplotype2 CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA HS_assemblymutate CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA ************************************************************ HS_haplotype1 GTTCAGCTACTAAATTCTTCCCCTTCATAGTTATTTGAGATGTTTAAAAACACTCCTGTA HS_haplotype2 GTTCAGCTACTAAATTCTTCCCCTTCATATTTATTTGAGATGATTAAAAACACTCCTGTA HS_assemblymutate GTTCAGCTACTAAATTCTTCCCCTTCATATTTATTTGAGATGATTAAAAACACTCCTGTA ***************************** ************ ***************** HS_haplotype1 TATATTAATGCTGTTTATTTTAGCTGGGCGAAGTCACAATTATTTTGTATGTTACTCGGA HS_haplotype2 TATATTAATGCTGTTTATTTTAGCTGGGCGAACTCACAATTATTTTGTATGTTACTCGGA HS_assemblymutate TATATTAATGCTGTTTATTTTAGCTGGGCGAAGTCACAATTATTTTGTATGTTACTCGGA ******************************** *************************** HS_haplotype1 TCTTCATTTCAATAAAATACAATTTGAGATGGAGAAAGCAAGTCATCCAGCCCCCGAGTT HS_haplotype2 TCTTCATTTCAATAAAATACAATTTGAGATGGAGAAAGCAAGTCATCCAGCCCCCGAGTT HS_assemblymutate TCTTCATTTCAATAAAATACAATTTGAGATGCACAAAGCAAGTCATCCAGCCCCCGAGTT ******************************* * ************************** HS_haplotype1 TTCTACCTAATATTATCTGAACACAAGTTGCAGAGGGAAATTGGCTCAGAAGGCCCATGT HS_haplotype2 TTCTGCCTAATATTATCTGAACACAAGTTGCAGCGGGAAATTGGCTCAGAAGTCCCATGT HS_assemblymutate TTCTACCTAATATTATCTGAACACAAGTTGCAGAGGGAAATTGGCTCAGAAGGCCCATGT **** **************************** ****************** ******* HS_haplotype1 GACCCCGGCCTGGTTCTTCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATAGTCTTA HS_haplotype2 GACCCCGGCCAGGTTCATCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATGGTCTTA HS_assemblymutate GACCCCGGCCAGGTTCATCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATGGTCTTA ********** ***** ************************************ ****** HS_haplotype1 TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA HS_haplotype2 TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA HS_assemblymutate TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA ************************************************************ HS_haplotype1 CATGCATGGAAGCCCTTTCTAATGGGAGGTGTTAGCTGAGGGGTCCTCAACCCGGGTCGA HS_haplotype2 CATGCATGGAAGCCCTTTCCAATGGGAGGTGTTAGCTGAGGGGTCCTCAACGCGGGTCGA HS_assemblymutate CATGCATGGAAGCCCTTTCCAATGGGAGGTGTTAGCTGAGGGGTCCTCAACGCGGGTCGA ******************* ******************************* ******** HS_haplotype1 CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT HS_haplotype2 CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT HS_assemblymutate CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT ************************************************************ HS_haplotype1 CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA HS_haplotype2 CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA HS_assemblymutate CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA ************************************************************ HS_haplotype1 AAGGGGACGCCAGAATCCCACAAGATTCAACCGAGGTATTTGAGCCAGTTGAGGCTCACC HS_haplotype2 AAGGGGACGCCAGAATCCCACAAGATTCAACCAAGGTATTTGAGCCAGTTGAGGCTCACC HS_assemblymutate AAGGGGACGCCAGAATCCCACAAGATTCAACCGAGGTATTTGAGCCAGTTGAGGCTCACC ******************************** *************************** HS_haplotype1 AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTATAATCAATGAC HS_haplotype2 AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTTTAATCAATGAC HS_assemblymutate AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTTTAATCAATGAC ************************************************ *********** HS_haplotype1 CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCCAGA HS_haplotype2 CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCTAGA HS_assemblymutate CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCCAGA ******************************************************** *** HS_haplotype1 ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTAGAC HS_haplotype2 ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTACAC HS_assemblymutate ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTACAC ********************************************************* ** HS_haplotype1 TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTATATATAGTAATA HS_haplotype2 TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTACATATAGTAATA HS_assemblymutate TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTATATATAGTAATA ************************************************ *********** HS_haplotype1 CACTAACTATAGGAAGGAGCCGGAGCCAATGCTTCTTTAACGGAATGCAGCCTAGGAACT HS_haplotype2 CACTAACTATCGGAAGGAGCCGGAGCCACTGCTTCTTTAACGGAATGCAGCCTAGGAACT HS_assemblymutate CACTAACTATCGGAAGGAGCCGGAGCCACTGCTTCTTTAACGGAATGCAGCCTAGGAACT ********** ***************** ******************************* HS_haplotype1 TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG HS_haplotype2 TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG HS_assemblymutate TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG ************************************************************ HS_haplotype1 GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC HS_haplotype2 GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC HS_assemblymutate GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC ************************************************************ HS_haplotype1 CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCCA HS_haplotype2 CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCAA HS_assemblymutate CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCCA ********************************************************** * HS_haplotype1 CAGAATTTGATGTAACTATAATTAATTACCCAAACGCTTTGTAAATGAGCCGGCCAAGAT HS_haplotype2 CAGAATTTGATGTAACTATAATTAATTACCCAAACGCTTTGTAAATGAGCCGGCCAAGAT HS_assemblymutate CAGAATTTGATGTAACTATAATTAATTACCCAGACACTTTGTAAATGAGCCGGCCAAGAT ******************************** ** ************************ HS_haplotype1 GATGTCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT HS_haplotype2 GATGTCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT HS_assemblymutate GGTATCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT * * ******************************************************** HS_haplotype1 GTGCAAAGAAGCGCAGCAGGGTGATCCTTCTTCCCTGCGACCCTGCCGGCCCTCCATCTT HS_haplotype2 GTGCAAAGAAGCGGAGCAGGGTGATCCTTCTTCCCTGCGTCCCTGCCGGCCCTCCATCTT HS_assemblymutate GTGCAAAGAAGCGGAGCAGGGTGATCCTTCTTCCCTGCGTCCCTGCCGGCCCTCCATCTT ************* ************************* ******************** HS_haplotype1 TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA HS_haplotype2 TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA HS_assemblymutate TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA ************************************************************ HS_haplotype1 TGTATTTTTAAGTGGAACTCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCCCAGA HS_haplotype2 TGAATTTTTAAGTGGAACTCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCCCAGA HS_assemblymutate TGGATTTTGAAGTGGAAATCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCACAGA ** ***** ******** ************************************* **** HS_haplotype1 ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG HS_haplotype2 ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG HS_assemblymutate ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG ************************************************************ HS_haplotype1 CCCTTCTCAAGGGACAGTCTTTCTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG HS_haplotype2 CCCTTCTCAAGGGACAGTTTTTGTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG HS_assemblymutate CCCTTCTCAAGGGACAGTTTTTGTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG ****************** *** ************************************* HS_haplotype1 CTCCTCATCTTGTAGAAAATGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT HS_haplotype2 CTCCTCATCTTGTAGAAATTGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT HS_assemblymutate CTCCTCATCTTGTAGAAAATGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT ****************** ***************************************** HS_haplotype1 CAAGGCAGGAGAAAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT HS_haplotype2 CAAGGCAGGAGACAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT HS_assemblymutate CAAGGCAGGAGACAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT ************ *********************************************** HS_haplotype1 TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAGGCTCG HS_haplotype2 TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAGGCTCG HS_assemblymutate TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAAGCTCC ****************************************************** **** HS_haplotype1 GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATTTCTAGACGGGGCGTGCTGAGGC HS_haplotype2 GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATTTCTAGTCGGGGCGTGCTGAGGC HS_assemblymutate GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATATCTAGTCGGGGCGTGCTGAGGC ************************************* ***** **************** HS_haplotype1 ACAATTTCTACTAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCGT HS_haplotype2 ACAATTTCTAATAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCGT HS_assemblymutate ACAATTTCTACTAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCAT ********** *********************************************** * HS_haplotype1 TGCACAAGATGGCTCTTGGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT HS_haplotype2 TGCACAAGATGGCTCTTGGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT HS_assemblymutate TGCACAAGAGGGCTCTTAGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT ********* ******* ****************************************** HS_haplotype1 ATAGAGACCTGAGGCCCGGCCTTTTTAGTATCAGCCCCTGGCTATAGAATGTATTGGCTT HS_haplotype2 ATAGAGACCTGAGGCCCGGCCTTTTTAGCATCAGCCCCTGGCTATAGAATGTCTTGGCTT HS_assemblymutate ATAGAGACCTGACTCCCGGCCTTTTTAGTATCATCCCCTGGCTATAGAATGTATTGGCTT ************ ************** **** ****************** ******* HS_haplotype1 CCTATGATTACCTTCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT HS_haplotype2 CCAATGATTACCTGCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT HS_assemblymutate CCAATGATTACCTGCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT ** ********** ********************************************** HS_haplotype1 AAAAACTCCTGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG HS_haplotype2 AAAAACTCCGGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG HS_assemblymutate AAAAACTCCTGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG ********* ************************************************** HS_haplotype1 GACTTAACAGTAGTGGTCATCACCTCCGGGATGGGATGTTAAATGCTTGGCTCACCTCTT HS_haplotype2 GGCTTAACAGTAGTGGTCATCACCTCCCGGATGGGATGTTAAATGCTTGGCTCAGCTCTT HS_assemblymutate GGCTTAACAGTAGTGGTCATCTCCTCGCGGATGGGATGTTAAATGCTTGGCTCAGCTCTT * ******************* **** ************************** ***** HS_haplotype1 CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTACAGGCGGCCAAAAA HS_haplotype2 CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTATAGGCGGCCAAAAA HS_assemblymutate CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTACAGGCGGCCAAAAA ********************************************** ************* HS_haplotype1 GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG HS_haplotype2 GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG HS_assemblymutate GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG ************************************************************ HS_haplotype1 ACATTTATATTTTGAACAATCAAAAATCATTCTGCTCTCCAATAACTCTATAACATGGGA HS_haplotype2 ACATTTATATTTTGAACAATCAAATATCATTCTGCTCTCCAATAACTCTATAACATGGGA HS_assemblymutate ACATTTATATTTTGAACAATCAAAAATCATTCTGCTCTCCAATAACTCTATAACATGGGA ************************ *********************************** HS_haplotype1 GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA HS_haplotype2 GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA HS_assemblymutate GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA ************************************************************ HS_haplotype1 TTCAGAACATAGAGTACTGTGCGCGAGACAGAGTTGGCCAAGTAGGTGCCAGGCTGGAAA HS_haplotype2 TTCAGAACATAGAGTACTGTGCGCGAGACAGAGTTGCCCAAGTAGGTGCCAGGCTGGAAA HS_assemblymutate TTCAGAACACAGAGAACTGTGCGCGAGATAGAGTTGGCCAAGTAGGTGCCAGGCTGGAAA ********* **** ************* ******* *********************** HS_haplotype1 ATAATGTACCTCTGGGGTATGACCTCTATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG HS_haplotype2 ATAATGTACCTCTGGGGTATGACCTCAATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG HS_assemblymutate ATAAGGTACCTCTGGGGTATGACCTCAATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG **** ********************* ********************************* HS_haplotype1 GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCTTGGT HS_haplotype2 GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCGTGGT HS_assemblymutate GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCTTGGT ******************************************************* **** HS_haplotype1 TACGTTTCATCCCTAGAGTCATTTTTATCAGTCAGTAGAGGCCAAAGTACGATGTTGGAT HS_haplotype2 TACGTTTCATCCCTAGACTCATTTTTATCAGTCAGTAGAGGCCAAAGTATGATGTTGGAT HS_assemblymutate TACGTTTCATCCCTAGACTCATTTTTATCAGTCAGTAGAGGCCAAAGTATGATGTTGGAT ***************** ******************************* ********** HS_haplotype1 ATACATTAACCTGATCATCATCTTAGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA HS_haplotype2 ATACATTAACCTGATCATCATCTTGGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA HS_assemblymutate ATACATTAACCTGATCATCATCTTAGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA ************************ *********************************** HS_haplotype1 ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG HS_haplotype2 ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG HS_assemblymutate ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG ************************************************************ HS_haplotype1 CTTTCTCACCACTACCTTTGATTGTGTCGATGTCACTTGATGAGATTGAGGGCTAGAGTG HS_haplotype2 CTGTCTCACCACTACCTTTGATTGTGTCGATGTCACATGATGAGATTGAGGGCTAGAGTG HS_assemblymutate CTTTCTCACCACTACCTTTGATTGTGTCGATGTCACTTGATGAGATTGAGGGCTAGAGTG ** ********************************* *********************** HS_haplotype1 GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT HS_haplotype2 GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT HS_assemblymutate GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT ************************************************************ HS_haplotype1 CCTTGTCTTCTCGCTTACCAAAGCCCGGCCTTATTTTTGGTAAAACATCCTCCACAGTTT HS_haplotype2 CCTTGTCTTCTCCCTTACCAAAGCCCGGCCTTATTTTCGGTAAAACATCCTCCACAGTTT HS_assemblymutate CCTTGTCTTCTCGCTTACCAAAGCCCGGCCTTATTTTTGGTAAAACATCCTCCACAGTTT ************ ************************ ********************** HS_haplotype1 TAATAGATCCCAAGAAGAAAAGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT HS_haplotype2 TAATAGATCCCAAGAAGAAATGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT HS_assemblymutate TAATAGATCCCAAGAAGAAATGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT ******************** *************************************** HS_haplotype1 GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT HS_haplotype2 GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT HS_assemblymutate GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT ************************************************************ HS_haplotype1 GATATGGCTCAGCTAATAGGCATTCCCCAGCCTGTCCAGCTCTTTATGCAATGTACTACA HS_haplotype2 GATATGGCTCAGCTAATAGGCATCCCCCAGCCTGTCCAGCTCTTTTTGCAATGTACTACA HS_assemblymutate GATATGGCTCAGCTAATAGGCATCCCCCAGCCTGTCCAGCTCTTTTTGCAATGTACTACA *********************** ********************* ************** HS_haplotype1 CACCCAGAGGGCGCTTCAGACCTTCCTATGTATGTTTTAAAGTTAAACTATCCTTTTATA HS_haplotype2 CACCCAGAGGGCGCTTCAGACCTTCCTATGTAGTTTTTAAAGTTAAACCATCCTTTTATA HS_assemblymutate CACCCAGAGGGCGCTTCAGACCTTCCTATGTATGTTTTAAAGTTAAACTATCCTTTTATA ******************************** ************** *********** HS_haplotype1 GAAAGTATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG HS_haplotype2 GAAAGGATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG HS_assemblymutate GAAAGTATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG ***** ****************************************************** HS_haplotype1 TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT HS_haplotype2 TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT HS_assemblymutate TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT ************************************************************ HS_haplotype1 GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTCGGCAGACATGGAGAAAATATCTGGT HS_haplotype2 GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTGGGCAGACATGGAGAAAATATCTGGT HS_assemblymutate GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTGGGCAGACATGGAGAAAATATCTGGT ********************************** ************************* HS_haplotype1 GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC HS_haplotype2 GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC HS_assemblymutate GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC ************************************************************ HS_haplotype1 GTCCAGTACTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG HS_haplotype2 GTCCAGTCCTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG HS_assemblymutate GTCCAGTCCTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG ******* **************************************************** HS_haplotype1 TAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGAACAACTCTTAAATGCTGGGGAG HS_haplotype2 AAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGGACAACTCTTAAATGCTGGGGAG HS_assemblymutate TAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGAACAACTCTTAAATGCTGGGGAG ************************************ ********************** HS_haplotype1 CCAGGGAGCTGGAGTCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG HS_haplotype2 CCAGGGAGCTGGAGGCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG HS_assemblymutate CCAGGGAGCTGGAGGCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG ************** ********************************************* HS_haplotype1 GGCCCTCAGACACAACAAGAATTACAGTGCTTCTTGCATTGATAGAGGAGAGAGATGACC HS_haplotype2 GGCCCTCAAACACAACAAGAATTACCGTGCTTCTTGCATTGATAGAGGAGAGTGATGACC HS_assemblymutate GGCCCTCAGACACAACAAGAATTACAGTGCTTCTTGCATTGATAGAGGAGAGAGATGACC ******** **************** ************************** ******* HS_haplotype1 TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATCGATCTTACTC HS_haplotype2 TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATTGATCTTACTC HS_assemblymutate TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATTGATCTTACTC ************************************************* ********** HS_haplotype1 GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACACATCATG HS_haplotype2 GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACACATCATG HS_assemblymutate GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACATATCATG ***************************************************** ****** HS_haplotype1 TATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA HS_haplotype2 TATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA HS_assemblymutate GATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA *********************************************************** HS_haplotype1 GCTCTAATCCCAAATATCCTAATTGATAATTCTGGTTATGTCCTCAGCTACTCACTACTG HS_haplotype2 GCTCTAATCCCAAAGATCCTAAGTGATAATTCTGGTTATGTCCTCAGCTACTCACAACTG HS_assemblymutate GCTCTAATCCCAAATATCCTAATTGATAATTCTGGTTATGTCCTCAGCTACTCACTACTG ************** ******* ******************************** **** HS_haplotype1 AGTATAATTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA HS_haplotype2 AGTATAAGTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA HS_assemblymutate ATTATAAGTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA * ***** **************************************************** HS_haplotype1 AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC HS_haplotype2 AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC HS_assemblymutate AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC ************************************************************ HS_haplotype1 TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTTCTTTTCC HS_haplotype2 TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTACTTTTCC HS_assemblymutate TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTACATTTGC **************************************************** * *** * HS_haplotype1 GAAATCTCTTTCTTCCCTTTTTGCATTAATTGCTGTTGTATATATTTCATCTATTTTCAA HS_haplotype2 GAAATCTCTTTCTTCCCTTATTCCATTAATTGCTGTTCTATATATTTCATCTATTTTCAA HS_assemblymutate GAAATCTCTTTCTTCCCTTTTTGCATAAATTGCTGTTGTATATATTTCATCTATTTTCAA ******************* ** *** ********** ********************** HS_haplotype1 GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTTAAGTTGATCTCTACAGGGTCGG HS_haplotype2 GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTCAAGTTGATCTCTACAGGGTCGG HS_assemblymutate GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTCAAGTTGATCTCTACAGGGTCGG ************************************* ********************** HS_haplotype1 AGGCGGTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT HS_haplotype2 AGGCGCTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT HS_assemblymutate AGGCGCTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT ***** ****************************************************** HS_haplotype1 GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTTC HS_haplotype2 GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTTC HS_assemblymutate GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTGC ********************************************************** * HS_haplotype1 CTCAAAACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGGACAGCACAGG HS_haplotype2 CTCAAAACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGGACAGCACAGG HS_assemblymutate CTCAACACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGAAGAGCATAGG ***** ******************************************* * **** *** HS_haplotype1 AGATGGATCTGTTACGTGGTGTTTCGATGACTAAGTCAGGGGAGGAAGCAAGATCCCCCT HS_haplotype2 AGACGGATCTGTTATGTGGTGTTTCGATGACTAAGTCAGGGGAGGAAGCAAGATCCCCCT HS_assemblymutate AGACGGATCTGTTATGTGGTGTTTCGATGAGTAAGTCAGTGGAGGAAGCAAGATCCCCCT *** ********** *************** ******** ******************** HS_haplotype1 CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA HS_haplotype2 CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA HS_assemblymutate CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA ************************************************************ HS_haplotype1 GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA HS_haplotype2 GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA HS_assemblymutate GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA ************************************************************ HS_haplotype1 CAGTTACCTGTAAGTGACTTCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA HS_haplotype2 CAGTTACCTGTAAGTGACTCCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA HS_assemblymutate CAGTTACCTGTAAGTGACTTCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA ******************* **************************************** HS_haplotype1 TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAAGAAATGTCTTAAAAATTACAGTG HS_haplotype2 TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAATAAATGTCTTAAAAATTACAGTG HS_assemblymutate TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAATAAATGTCTTAAAAATTACAGTG ************************************* ********************** HS_haplotype1 CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG HS_haplotype2 CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG HS_assemblymutate CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG ************************************************************ HS_haplotype1 AAAAATCATCATGGTTGTATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA HS_haplotype2 AAAAAACATCATGGTTATATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA HS_assemblymutate AAAAAACATCATGGTTATATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA ***** ********** ******************************************* HS_haplotype1 ATATCATTCCTCCTGACCAGGAGCCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT HS_haplotype2 ATATAATTCCTCCTGACCAGGAACCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT HS_assemblymutate ATATCATTCCTCCTGACCAGGAGCCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT **** ***************** ************************************* HS_haplotype1 TTTAAGCCTTGGTTGCAGTTGGCATGTAATACTACAAGACTTCCACCTGGTTAGGGTTAT HS_haplotype2 TTTAAGCCTTGGTTGCAGTTGGCATGGAATACTACAAGACTTCCAGCTGGTTAGGGTTAT HS_assemblymutate TTTAAGCCTTGGTTGCAGTTGGCATGGAATACTACAAGACTTCCAGCTGGTTAGGGTTAT ************************** ****************** ************** HS_haplotype1 TGCCTCCATTAACAGGCTGAATAGCATGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT HS_haplotype2 TGCCTCCATTAACAGGCTGAATAGCAGGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT HS_assemblymutate TGCCTCCATTAACAGGCTGAATAGCATGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT ************************** ********************************* HS_haplotype1 CTCTCCTGCCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCATGGGATAGC HS_haplotype2 TTCTCCTACCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCTTGGGATAGC HS_assemblymutate TTCTCCTACCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCTTGGGATAGC ****** ****************************************** ********* HS_haplotype1 ATATACATCCCAACAAGTATATTAAATACTCCGCGCAGCTTCAGGTCTCTCCCCATATTT HS_haplotype2 ATATACATCCCAAGAAGTATATTAAATACTCCGCGCAGCTTGAGGTCTCTCCCCCTATTT HS_assemblymutate ATATACATCCCAACAAGTATATTAAATACTCCGCGCAGCTTCAGGTCTCTCCCCATATTT ************* *************************** ************ ***** HS_haplotype1 CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG HS_haplotype2 CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG HS_assemblymutate CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG ************************************************************ HS_haplotype1 CTAGACTCCTGAATCAAACTTCACGAGACCTGAGGCCTTCCGTAATTATAAATAATCCTT HS_haplotype2 CTAGACTCCTGAATCAAACTTCTCGAGACCGGAGGCCTTCCGTAATTATAAATAATCCTT HS_assemblymutate CTAGACTCCTGAATCAAACTTCACGAGACCTGAGGCCTTCCGTAATTATAAATAATCCTT ********************** ******* ***************************** HS_haplotype1 TTGTGGTGATCACATGCCTAAGGGTAAAATCTTTCTTTTTTGTCTAAGAATTTTTCACCA HS_haplotype2 TTGTGGTGATCACATGCCTATGGGTAAAATCTTTCTTTTTTGTCTAAGAAATTTTCACCA HS_assemblymutate TTGTGGTGATCACATGCCTATGGGTAAAATCTTTCTTTTTTGTCTAAGAGATTCTCACCA ******************** **************************** ** ****** HS_haplotype1 ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCACACTCAGCTCTGAA HS_haplotype2 ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCTCACTCAGCTCTGAA HS_assemblymutate ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCACACTCAGCTCTGAA ********************************************* ************** HS_haplotype1 GAGTTCATGTATGGTGTGTCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC HS_haplotype2 GAGTTCATGTATGGTGTGCCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC HS_assemblymutate GAGTTCATGTATGGTGTGCCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC ****************** ***************************************** HS_haplotype1 CTCTTGAGGGGTAAATTTTTATTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA HS_haplotype2 CTCTTGAGGGGTAAATTTTTATTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA HS_assemblymutate CTCTTGAGGGGTCAATTTTTGTTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA ************ ******* *************************************** HS_haplotype1 GTCTGTCTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC HS_haplotype2 GTCTGTGTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC HS_assemblymutate GTCTGTGTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC ****** ***************************************************** HS_haplotype1 CTGCCTGTATACCATCCAACCTCATGTCACTTTAAATAAGAGAGCATCACGACGGTTTAA HS_haplotype2 CTGACTGAATACCATCCAACCTCATGCCACTTTAAATAAGAGAGCATCACGACGGTTTAA HS_assemblymutate CTGCCTGTATACCATCCAACCTCATGTCACTTTAAATAAGAGAGCATCACGACGGTTTAA *** *** ****************** ********************************* HS_haplotype1 TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT HS_haplotype2 TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT HS_assemblymutate TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT ************************************************************ HS_haplotype1 TTGGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT HS_haplotype2 TTTGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT HS_assemblymutate TTGGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT ** ********************************************************* HS_haplotype1 TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG HS_haplotype2 TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG HS_assemblymutate TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG ************************************************************ HS_haplotype1 TGCCCATGATGAGAGCATCCTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG HS_haplotype2 TGCCAATGATGAGAGCATACTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG HS_assemblymutate TGCCCATGATGAGAGCATCCTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG **** ************* ***************************************** HS_haplotype1 GCAAAAAATTCCTTCTGCAGTGGAGGGGATTACTTTGACTTCAAAACGAGGCTTCCCTGG HS_haplotype2 GCAAAAAAATCCTTCTGAAGTGGAGGGGATTACTTTGACTTCAAAACAAGGCTTCCCTGG HS_assemblymutate GCAAAAAAATCCTTCTGAAGTGGAGGGGATTACTTTGACTTCAAAACAAGGCTTCCCTGG ******** ******** ***************************** ************ HS_haplotype1 CGGAGTCAGGAGCTACTCTTATCAGCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT HS_haplotype2 CGGAGTCAGGAGCTACTCTTATCATCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT HS_assemblymutate CGGAGTCAGGAGCTACTCTTATCAGCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT ************************ *********************************** HS_haplotype1 TTGTAAATATAGTCATATGCCTAACCTCTCAGAAATAAAATGTGACTGCGGCCCAGCTCC HS_haplotype2 TTGTAAATATAATCATATGCCTAACCTCTCAGAAATAATATGTGACTGCGGCCCAGCTCC HS_assemblymutate TTGTAAATATAATCATATGCCTAACCTCTCAGAAATAATATGTGACTGCGGCCCAGCTCC *********** ************************** ********************* HS_haplotype1 AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC HS_haplotype2 AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC HS_assemblymutate AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC ************************************************************ HS_haplotype1 ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT HS_haplotype2 ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT HS_assemblymutate ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT ************************************************************ HS_haplotype1 GCCACCCTCCAGAGGTTGCAAAGTTAAAGAACAGTCTTGTGGTGAATATACGAAGTTCGG HS_haplotype2 GCCACCCTCCTGAGGTTGCAAAGTTAAAGAACAGTCTTGTGGTGAATATACGAAGTTCGG HS_assemblymutate GCCACCCTCCAGAGGTTGCAAAGTTAAAGAACAGTCTTCTGGAGAATATACGAAGTTCGG ********** *************************** *** ***************** HS_haplotype1 TCTCCATATCAGATCAGCCTTCAGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT HS_haplotype2 CCTCCATTTCAGATCAGCCTTCCGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT HS_assemblymutate CCTCCATTTCAGATCAGCCTTCCGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT ****** ************** ************************************* HS_haplotype1 TAGAGAATTGCATGCTGACCGCTCCCTGGTTTCACTGAGAAGATTTATATACACTAGATT HS_haplotype2 TAGAGAATTGCATGCTGACCGCTCTCTGGTTTCACTGAGAACATTTATATACACTAGATT HS_assemblymutate TAGAGAATTGCATGCTGACCGCTCCCTGGTTTCGCTCAGAAGATTTATATACACTATATT ************************ ******** ** **** ************** *** HS_haplotype1 GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGC HS_haplotype2 GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGG HS_assemblymutate GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGG *********************************************************** HS_haplotype1 TATGAAAACACTAACATCGCCTATACAAAACAAAGAGCTTGTGTCAGCGGGAGCAATTGA HS_haplotype2 TGTGAAAACAGTAACATAGCGTATACAATCCAAAGAGCTTGTGTCAGCGGGAGCAATTGA HS_assemblymutate TATGAAAACACTAACATCGCCTATACAAAACAAAGAGCTTGTGTCAGCGGGAGCAATTGA * ******** ****** ** ******* ****************************** HS_haplotype1 CGTCCGCTCTGCAACTTTGAGTCTCTGAAGAAAGGGCTCAACACCCAGCTCTCCCGGATC HS_haplotype2 CGTCCGCTCTGCAACTTTGAGTCTCTGAAGAAAGGGCACAACACCCAGCTCTCCCGGATC HS_assemblymutate CGTCCACTCTGCCACTTTGAGTCTCTGAAGAAAGGGCACAACACCCAGCTCTCCCGGATC ***** ****** ************************ ********************** HS_haplotype1 TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC HS_haplotype2 TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC HS_assemblymutate TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC ************************************************************ HS_haplotype1 ACGGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGA HS_haplotype2 ACAGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGG HS_assemblymutate ACAGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGG ** ******************************************************** HS_haplotype1 GTGCAGTATATGCTTTCTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC HS_haplotype2 GTGCAGTATATGCTTACTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC HS_assemblymutate GTGCAGTATATGCTTACTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC *************** ******************************************** HS_haplotype1 CAGGCAACACATCCTCACAGCAGCACATTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA HS_haplotype2 CAGGCAACACATCCTCACAGCAGCACTTTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA HS_assemblymutate CAGGCAACACATCCTCACAGCAGCACTTTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA ************************** ********************************* HS_haplotype1 CCCTGAGGCCCATCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT HS_haplotype2 CCCTGAGGCCCGTCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT HS_assemblymutate CCCTGAGGCCCATCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT *********** ************************************************ HS_haplotype1 CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGTTTTTATTTTCTCCTCTGCTTTAT HS_haplotype2 CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGCTTTTATTTTCTCCTCTGCTTTAT HS_assemblymutate CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGTTTTTATTTTCTCCTCTTCGTTAT ************************************ **************** * **** HS_haplotype1 TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG HS_haplotype2 TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG HS_assemblymutate TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG ************************************************************ HS_haplotype1 AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATATTGGCACAGCGCA HS_haplotype2 AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATTTTTGCACAGCGCA HS_assemblymutate AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATTTTTGCACAGCGCA ********************************************** ** ********** HS_haplotype1 GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCAGTGTGAAGATTGCCAAATAATCATGA HS_haplotype2 GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCATTGTGAAGATTGCCAAATAATCATGA HS_assemblymutate GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCAGTGTGAAGATTGCCAAATAATCATGA ********************************** ************************* HS_haplotype1 GAGATTTGCATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA HS_haplotype2 GAGATTTGCATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA HS_assemblymutate GAGATTTATATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA ******* *************************************************** HS_haplotype1 AACAAACTGCATAGAAAAAATTGGTAAGAGATACTACAGGATCATGACCTAGCCGGCAAC HS_haplotype2 AACAAACTGCATAGAGAAAATTGGTAAGAGATACTACAGGATCATGAACTAGCCGGCAAC HS_assemblymutate AACAAACTGCATAGAAAAAATTGGTAAGAGATACTACAGGATCATGACCTAGCCGGCAAC *************** ******************************* ************ HS_haplotype1 ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT HS_haplotype2 ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT HS_assemblymutate ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT ************************************************************ HS_haplotype1 TCTGTTTTCATATGAACTTACAAGCAGGCTATTTTTTTATCATCCTCTGTGCTAATTTGG HS_haplotype2 TCTGTTTTCATATGAACATACAAGCAGGCTATTTTTCTATCATCCTCTGTGCTAATTTGG HS_assemblymutate TCTGTTTTCATATGAACTTACAAGCAGGCTATTTTTTTATCATCCTCTGTGCTAATTTGG ***************** ****************** *********************** HS_haplotype1 AAGACCTCCTGTTGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA HS_haplotype2 AAGACCTCCTGTGGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA HS_assemblymutate AAGACCTCCTGTGGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA ************ *********************************************** HS_haplotype1 GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGGCTGC HS_haplotype2 GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGTCTGC HS_assemblymutate GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGGCTGC ******************************************************* **** HS_haplotype1 CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA HS_haplotype2 CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA HS_assemblymutate CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA ************************************************************ HS_haplotype1 GCAAAGTCTGCTGGCATTCCACCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC HS_haplotype2 GCAAAGTCTGCTGGCATTCCAGCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC HS_assemblymutate GCAAAGTCTGCTGGCATTCCACCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC ********************* ************************************** HS_haplotype1 AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG HS_haplotype2 AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG HS_assemblymutate AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG ************************************************************ HS_haplotype1 AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC HS_haplotype2 AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC HS_assemblymutate AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC ************************************************************ HS_haplotype1 TGGGTTGAAAAATAATAGGTGATGTTTTTGTCCCTATAAATGTATATTGAATATTAAGTA HS_haplotype2 TTGGTTGCATAATAATAGGTGATGTTTTCGTCCCTATAAATGTATATTGAATATTAAGTA HS_assemblymutate TTGGTTGCATAATAATAGGTGATGTTTTCGTCCCTATAAATGTATATTGAATATTAAGTA * ***** * ****************** ******************************* HS_haplotype1 ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG HS_haplotype2 ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG HS_assemblymutate ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG ************************************************************ HS_haplotype1 GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCGCTGTTGCAAGAGAACAAGGAAGCCAT HS_haplotype2 GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCTCTGTTGCAAGAGAACAAGGAAGCCAT HS_assemblymutate GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCTCTGTTGCAAGAGAATAAGGAAGCCTT ********************************* ************** ********* * HS_haplotype1 TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG HS_haplotype2 TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG HS_assemblymutate TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG ************************************************************ HS_haplotype1 ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG HS_haplotype2 ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG HS_assemblymutate ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG ************************************************************ HS_haplotype1 CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG HS_haplotype2 CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG HS_assemblymutate CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG ************************************************************ HS_haplotype1 GGACATGGTATGAAACCCTTCAACAAAAATTAAATACTTAGGCTTTCAAAGGCCTTCCCC HS_haplotype2 GAACATGGTATGAAACCCTTCAACAAAAATTAAATAGTTAGGCTTTCAAAGGCCTTCCCC HS_assemblymutate GAACATGGTATGAAACCCTTCAACAAAAATTAAATAGTTAGGCTTTCAAAGGCTTTCCCC * ********************************** **************** ****** HS_haplotype1 CATGCTAACAGGCAACAGATCATTTTTGGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT HS_haplotype2 CATGCTAATAGGCAACAGATCATTTTTTGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT HS_assemblymutate CAGGCCAACAGGCAACAGATCATTTTTGGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT ** ** ** ****************** ******************************** HS_haplotype1 AAAAGACAGACTATATATGGAATAATAAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG HS_haplotype2 AAAAGACAGACTATATATGGAATAATTAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG HS_assemblymutate AAAAGACAGACTATATATGGAATAATTAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG ************************** ********************************* HS_haplotype1 GTGAATCATAGGTTTATTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG HS_haplotype2 GTGAATCATAGGTTTGTTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG HS_assemblymutate GTGAATCATAGGTTTGTTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG *************** ******************************************** HS_haplotype1 TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG HS_haplotype2 TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG HS_assemblymutate TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG ************************************************************ HS_haplotype1 TAAGAACTCATTGCACTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC HS_haplotype2 TAAGAACTCATTGCAGTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC HS_assemblymutate TAAGAACTCATTGCACTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC *************** ******************************************** HS_haplotype1 TTCTTTGGTCCTATACAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG HS_haplotype2 TTCTTTGGTCCTATATAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG HS_assemblymutate TTCTTTGGTCCTATATAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG *************** ******************************************** HS_haplotype1 GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA HS_haplotype2 GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA HS_assemblymutate GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA ************************************************************ HS_haplotype1 ATTTAGTGGGACTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA HS_haplotype2 ATTTAGTGGGCCTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA HS_assemblymutate ATTTAGTGGGCCTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA ********** ************************************************* HS_haplotype1 GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA HS_haplotype2 GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA HS_assemblymutate GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA ************************************************************ HS_haplotype1 TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC HS_haplotype2 TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC HS_assemblymutate TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC ************************************************************ HS_haplotype1 AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTGCAC HS_haplotype2 AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTACAC HS_assemblymutate AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTGCAC ******************************************************** *** HS_haplotype1 CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC HS_haplotype2 CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC HS_assemblymutate CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC ************************************************************ HS_haplotype1 CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT HS_haplotype2 CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT HS_assemblymutate CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT ************************************************************ HS_haplotype1 TCAAAATGAGGCTCAGACACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTAC HS_haplotype2 TCAAAATGAGGCTCAGCCACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTGC HS_assemblymutate TCAAAATGAGGCTCAGCCACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTGC **************** ***************************************** * HS_haplotype1 AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT HS_haplotype2 AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT HS_assemblymutate AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT ************************************************************ HS_haplotype1 AAGTTAAGTAGAGAGATACGATGGAGCGCCTTAAAATGTATTTAGCCCGCTACAAGGAGT HS_haplotype2 AAGTTAAGTAGAGCGATACGATGGAGCGCCTTAAAATGTATTTAGCCCGCTACAAGGAGA HS_assemblymutate AAGTTAAGTAGAGCGATACGATGTAGCGCCTTCAAATGTATTTAGCCCGCTACAAGGAGA ************* ********* ******** ************************** HS_haplotype1 GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC HS_haplotype2 GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC HS_assemblymutate GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC ************************************************************ HS_haplotype1 CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGCT HS_haplotype2 CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGCT HS_assemblymutate CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGGT ********************************************************** * HS_haplotype1 AGTGTTATGCACTCAGAGACTAAGGTCCTAATGGCATGTGCTTCCTGCTAAGCAAGGGAC HS_haplotype2 AGTGTTACGCACTCAGAGACTAAGGTCCTAATGGCATGTGCTTCCTGCTAAGGAAGGGAC HS_assemblymutate AGTGATATGCACTCAGAGACTAAGGTCCTAATGGCAAGTGCTTCCTGCTAAGCAAGGGAC **** ** **************************** *************** ******* HS_haplotype1 TCTCTCTGTTATAACCATCCCGGGCGCCAGTAGTTCTGTTATGACGCGGCTTTCATGGCG HS_haplotype2 TCTCTCTGTTATAACCATCCCGGGCGACAGTAGTTCTGTTATGACGCGGCTTTCATGGCG HS_assemblymutate TCTCTCTGTTATAACCATCCCGGGCGACAGTAGTTCTGTTATGACGCGGCTTTCATGGCG ************************** ********************************* HS_haplotype1 TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGAGTTTAGTGAGTGTGTGATCTGCA HS_haplotype2 TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGAGTTTAGTGAGTGTGTGATCTGCA HS_assemblymutate TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGGCTCTAGTGAGTGTGTGATCTGCA ************************************ * ******************** HS_haplotype1 AGCATTTCCCCAAATTTATATAGCAGTATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC HS_haplotype2 AGCATTTCCCCAAATTTATATAGCAGTATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC HS_assemblymutate AGCATTTCCCCAAATTTATATAGCTGAATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC ************************ * ********************************* HS_haplotype1 CAGCATTTTCTACTAAAGAATGTAATGTAGAGTAGGCTGAAGAGGCTCTACTCATGTAAT HS_haplotype2 CAGCATTTTCTACTAAAGAATGTAATGGAGAGTAGGCTGAAGCGGCTCTACTCATGTGAT HS_assemblymutate CAGCATTTTCTACTAAAGAATGTAATGTAGAGTAGCCTGAAGAGGCTGTACTCATGTAAT *************************** ******* ****** **** ********* ** HS_haplotype1 GTTTTATAGACAGCATTAACTCCTAATAATGGGTAGGAAGAAATGTTGAGGGATTTTGAA HS_haplotype2 TTTTTATAGACAGCATTAACTCCTAATAATGGGTAGGCAGAAATGTTGAGGGATTTTCAA HS_assemblymutate TTTTTATAGACAGCATTAACTCCTAATAATGGCTAGGCAGAAATGTTGAGGGATTTTCAA ******************************* **** ******************* ** HS_haplotype1 ACATCTACCATGCTTAAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG HS_haplotype2 ACATCTACCATGCTTTAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG HS_assemblymutate ACATCTACCATGCTTAAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG *************** ******************************************** HS_haplotype1 ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC HS_haplotype2 ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC HS_assemblymutate ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC ************************************************************ HS_haplotype1 TATTTAAAGGATGGCTTCACATGTTCACGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT HS_haplotype2 TATTTAAAGGATGGCTTCACATGTTCAGGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT HS_assemblymutate TATTTAAAGGATGGCTTCACATGTTCACGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT *************************** ******************************** HS_haplotype1 ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATGAGGCTTATTGTCT HS_haplotype2 ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATCAGGCTTATTGTCT HS_assemblymutate ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATCAGGCTTATTGTCT ********************************************** ************* HS_haplotype1 GGGTTTCAGTCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACATCATGCCCGGCTCA HS_haplotype2 GGGTTTCAATCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACAACATGCCCGGCTCA HS_assemblymutate GGGTTTCAATCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACATGATGCCCGGCTCA ******** ************************************* ************ HS_haplotype1 CTCCTGCCTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG HS_haplotype2 CTCCTGCGTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG HS_assemblymutate CTCCTGCGTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG ******* **************************************************** HS_haplotype1 ACTATCTTTCCTTCCAGGAGAGGTAGAGATTGCTGTTTCCATGGGTGTATACATACTCGG HS_haplotype2 ACTATCTTTCCTTCCAGGAGAGGTTGAGATTGCTGTTTCCATGGGTATATACATACTCGG HS_assemblymutate ACTATCTTTCCTTCCAGGAGAGGTAGAGATTGCTGTTTCCATGGGTATATACATACTCGG ************************ ********************* ************* HS_haplotype1 GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC HS_haplotype2 GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC HS_assemblymutate GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC ************************************************************ HS_haplotype1 AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA HS_haplotype2 AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA HS_assemblymutate AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA ************************************************************ HS_haplotype1 GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG HS_haplotype2 GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG HS_assemblymutate GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG ************************************************************ HS_haplotype1 CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA HS_haplotype2 CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA HS_assemblymutate CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA ************************************************************ HS_haplotype1 GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC HS_haplotype2 GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC HS_assemblymutate GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC ************************************************************ HS_haplotype1 TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG HS_haplotype2 TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG HS_assemblymutate TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG ************************************************************ HS_haplotype1 TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA HS_haplotype2 TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA HS_assemblymutate TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA ************************************************************ HS_haplotype1 AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC HS_haplotype2 AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC HS_assemblymutate AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC ************************************************************ HS_haplotype1 TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA HS_haplotype2 TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA HS_assemblymutate TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA ************************************************************ HS_haplotype1 ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT HS_haplotype2 ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT HS_assemblymutate ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT ************************************************************ HS_haplotype1 CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC HS_haplotype2 CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC HS_assemblymutate CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC ************************************************************ HS_haplotype1 AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG HS_haplotype2 AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG HS_assemblymutate AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG ************************************************************ HS_haplotype1 GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG HS_haplotype2 GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG HS_assemblymutate GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG ************************************************************ HS_haplotype1 CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA HS_haplotype2 CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA HS_assemblymutate CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA ************************************************************ HS_haplotype1 GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG HS_haplotype2 GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG HS_assemblymutate GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG ************************************************************ HS_haplotype1 AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT HS_haplotype2 AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT HS_assemblymutate AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT ************************************************************ HS_haplotype1 TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT HS_haplotype2 TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT HS_assemblymutate TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT ************************************************************