MUSCLE (3.8) multiple sequence alignment HS_haplotype1 AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG HS_assemblymutate_np1212 AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG HS_haplotype2 AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG ************************************************************ HS_haplotype1 GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA HS_assemblymutate_np1212 GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA HS_haplotype2 GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA ************************************************************ HS_haplotype1 ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC HS_assemblymutate_np1212 ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC HS_haplotype2 ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC ************************************************************ HS_haplotype1 ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT HS_assemblymutate_np1212 ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT HS_haplotype2 ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT ************************************************************ HS_haplotype1 CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT HS_assemblymutate_np1212 CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT HS_haplotype2 CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT ************************************************************ HS_haplotype1 TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC HS_assemblymutate_np1212 TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC HS_haplotype2 TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC ************************************************************ HS_haplotype1 AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG HS_assemblymutate_np1212 AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG HS_haplotype2 AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG ************************************************************ HS_haplotype1 TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG HS_assemblymutate_np1212 TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG HS_haplotype2 TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG ************************************************************ HS_haplotype1 CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA HS_assemblymutate_np1212 CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA HS_haplotype2 CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA ************************************************************ HS_haplotype1 GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC HS_assemblymutate_np1212 GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC HS_haplotype2 GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC ************************************************************ HS_haplotype1 ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC HS_assemblymutate_np1212 ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC HS_haplotype2 ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC ************************************************************ HS_haplotype1 CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC HS_assemblymutate_np1212 CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC HS_haplotype2 CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC ************************************************************ HS_haplotype1 CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA HS_assemblymutate_np1212 CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA HS_haplotype2 CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA ************************************************************ HS_haplotype1 TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA HS_assemblymutate_np1212 TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA HS_haplotype2 TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA ************************************************************ HS_haplotype1 TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC HS_assemblymutate_np1212 TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC HS_haplotype2 TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC ************************************************************ HS_haplotype1 AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA HS_assemblymutate_np1212 AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA HS_haplotype2 AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA ************************************************************ HS_haplotype1 TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTCTTAGGTATTG HS_assemblymutate_np1212 TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTCTTAGGTATTG HS_haplotype2 TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTTTTACGTATTG ************************************************* *** ****** HS_haplotype1 GCCTCCTTCTGTCATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT HS_assemblymutate_np1212 GCCTCCTTCTGTCATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT HS_haplotype2 GCCTCCTTCTGTGATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT ************ *********************************************** HS_haplotype1 CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCAACAGGACATTGTATTTCTTCCT HS_assemblymutate_np1212 CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCAACAGGACATTGTATTTCTTCCT HS_haplotype2 CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCGACAGGACATTGTATTTCTTCCT ************************************* ********************** HS_haplotype1 ATGGTTTTGAATTGGCCAAGGACATACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA HS_assemblymutate_np1212 ATGGTTTTGAATTGGCCAAGGACATACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA HS_haplotype2 ATGGTTTTGAATTGGCTAAGGACAAACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA **************** ******* *********************************** HS_haplotype1 ACTCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGAGT HS_assemblymutate_np1212 AATCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGGGT HS_haplotype2 AATCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGGGT * ******************************************************* ** HS_haplotype1 GAATATATGCTCTGCCCCTCCCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA HS_assemblymutate_np1212 GAATATATCCTCGGCCCCTCCCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA HS_haplotype2 GAATATATCCTCGGCCCCTCCCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA ******** *** *********************************************** HS_haplotype1 CATCTCTGATCAAAATATCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT HS_assemblymutate_np1212 CATCTCTGATCAAAATGTCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT HS_haplotype2 CATCTCTGATCAAAATGTCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT **************** ******************************************* HS_haplotype1 CCCAGCAGTGCTGGACTACACGATAAACCTAGGCATTCTGGACGGGGCCGCGGCTAATTA HS_assemblymutate_np1212 CCCAGCAGTGCTGGACTACTCGATAAACCTAGGCATTCTGGACGGGGCCGCGGCGAATTA HS_haplotype2 CCCAGCAGTGCTGGACTACTCGATAAACCTAGGCATTCTGGACGGGGCCGCGGCGAATTA ******************* ********************************** ***** HS_haplotype1 AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG HS_assemblymutate_np1212 AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG HS_haplotype2 AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG ************************************************************ HS_haplotype1 GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAATTTTCACCTGTGTGATAAGGGG HS_assemblymutate_np1212 GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAGTTTTCACCTGTGTGATAAGGGG HS_haplotype2 GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAGTTTTCACCTGTGTGATAAGGGG ************************************* ********************** HS_haplotype1 CCCAGCTACCTGTGTGTGCATTGTGATTTATTTTTGCATTGCACCGGAACTGACTGTATC HS_assemblymutate_np1212 CCCAGCTACCTGTGTGTGCATTGTGATTTATTTTTGCATTGCACCGGAACTGACTGTATC HS_haplotype2 CCCAGCTACCTGTGTGTGCATTGTGATTTATTTTTGCATTGCACCGGAACTGACTGTATC ************************************************************ HS_haplotype1 TGGAATACTCTCTCAGCTGACAGCAGCCTCTATTGTCTAACAACCCAGGTGCAATCAGAG HS_assemblymutate_np1212 TGGAATACTCTCTCAGCTGACAGCAGCCTCTGTTGTCTAACAACCCAGGTGCAATCAGAG HS_haplotype2 TGGAATACTCTCTCAGCTGACAGCAGCCTCTGTTGTCTAACAACCCAGGTGCAATCAGAG ******************************* **************************** HS_haplotype1 TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC HS_assemblymutate_np1212 TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC HS_haplotype2 TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC ************************************************************ HS_haplotype1 TTTCCTCAGGACTGTGTTTCATGCGCTGTTTCTAGAAACACCAGCCCTGGGATCACAGTA HS_assemblymutate_np1212 TTTCCTCAGGACTGTGTTTCATGCGCTGTTTCTAGAAACACCAGCCCTGGTATCAAAGTA HS_haplotype2 TTTCCTCAGGACTGTGTTTCATCCGCTGTTTCTAGAAACACCAGCCCTGGTATCAAAGTA ********************** *************************** **** **** HS_haplotype1 CGAGCCACCACCTAGGTCTAGACATGACCAAAACCAACTTAGAAAATATTTGAGACAGGA HS_assemblymutate_np1212 CCAGCCACCACCTAGGTCTAGACATGACCAAGACCAACTTAGAAAATATTTGAGACAGGA HS_haplotype2 CCAGCCACCACCTAGGTCTAGACATGACCAAGACCAACTTAGAAAATATTTGAGACAGGA * ***************************** **************************** HS_haplotype1 CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT HS_assemblymutate_np1212 CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT HS_haplotype2 CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT ************************************************************ HS_haplotype1 CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCACCTGAGTCATTC HS_assemblymutate_np1212 CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCACCTGAGTCATTC HS_haplotype2 CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCAACTGAGTCATTC ************************************************ *********** HS_haplotype1 GAGATGGGGATCCATGCCAACCCCTAAGGTCAGATGGGTCACCTCTCTGCAGGCATGGAT HS_assemblymutate_np1212 GAGATGGGGATCCATGCCAACCCCTAAGGTCAGATGGGTCACCTCTCTGCAGGCATGGAT HS_haplotype2 GAGATGGGGATCCATGCCAACCCCTAAGGACAGATGGGTCACCTCTCTGCAGGCATGGAT ***************************** ****************************** HS_haplotype1 GAAATATAAAAGAAACTGAGGTTGAATTAAGGAATGCCCTCCTCTGCATTTACTAATTTC HS_assemblymutate_np1212 GAAATATAAAAGAAACTGAGGTTGAATTAAGGAATGCCCTCCTCTGCATTTACTAATTTC HS_haplotype2 GAACTATAAAAGAAACTGAGGTTGAATTAAGGAATGCTCTCCTCTGCATTTACTAATTTC *** ********************************* ********************** HS_haplotype1 ATCCTACTCTGTCTTGGAGGAATAGAAAAACTCCTAGTTGGACAACAGATTTTAGTAGAA HS_assemblymutate_np1212 ATCCTACTCTGTCTTGGAGGAATAGAAAAACTCCTAGTTGGACAACAGATTTTAGTAGAA HS_haplotype2 ATCCTACTCTGGCTAGGAGGAATAGAAAAACTCCTAGGTGGACAACAGATTTTAGTAGAA *********** ** ********************** ********************** HS_haplotype1 GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCG HS_assemblymutate_np1212 GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCG HS_haplotype2 GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCA *********************************************************** HS_haplotype1 GGGTTTTCATCCCCGAGAAATAAGACTAATTGGTCCCTGGAATGCTGGGCAGATCGCGAT HS_assemblymutate_np1212 GGGTTTTCATCCCCGAGAAATAAGACTAATTGGTCCCTGGAATGCTGGGCAGATCGCGAT HS_haplotype2 GGGTTTTCATCCCCGAGAAATAAGGCTAATTGATCCCTGGAATGCTGGGCGGATCGCGAT ************************ ******* ***************** ********* HS_haplotype1 CTGCCCATGCTAATGGAGAAGAAAGTATTTGGCTTGGGCAAGGTACCTGAGGAGGAGCTA HS_assemblymutate_np1212 CTGCCCATGCTAATGGAGAAGAAAGTATTTGGCTTGGGCAAGGTACCTGAGGAGGAGCTA HS_haplotype2 CTGCCCATGCTTATGGAGAAGAAAGTATTTGGCTTGGGCCATGTACCTGAGGAGGAGCTA *********** *************************** * ****************** HS_haplotype1 TCAAACATCTTAGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTAGAGCTTTTC HS_assemblymutate_np1212 TCAAACATCTTAGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTAGAGCTTTTC HS_haplotype2 TCAAACATCTTGGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTTGAGCTTTTC *********** ************************************** ********* HS_haplotype1 TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG HS_assemblymutate_np1212 TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG HS_haplotype2 TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG ************************************************************ HS_haplotype1 TGCGCGAGTAGTCCCTTCCTCTCTGTCATCCCAATCATGGATTTGTTTCCAGTTCAAGAC HS_assemblymutate_np1212 TGCGCGAGTAGTCCCTTCCTCTCTGTCACCCCAATCATGGATTTGTTTGCAGTTCAAGAC HS_haplotype2 TGCGCGAGTAGTCCCTTCCTCTCTGTCACCCCAATCATGGATTTGTTTGCAGTTCAAGAC **************************** ******************* *********** HS_haplotype1 TTAGCAGGCTGGTTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT HS_assemblymutate_np1212 TTAGCAGGCTGGGTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT HS_haplotype2 TTAGCAGGCTGGGTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT ************ *********************************************** HS_haplotype1 TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAA HS_assemblymutate_np1212 TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAA HS_haplotype2 TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAC *********************************************************** HS_haplotype1 ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA HS_assemblymutate_np1212 ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA HS_haplotype2 ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA ************************************************************ HS_haplotype1 AGAGAGGTCGGCTGCCACATATTTGCCCAGGGAATTTCAATGGGAGGGCGTGGTAGGCGG HS_assemblymutate_np1212 AGAGAGGTCGGCTGCCACATATCTGCCCAGGGAATTTCAATGGGAGGGCATGGTAGGCGG HS_haplotype2 AGAGAGGTCGGCTGCCACATATCTGCCCAGGGAATTTCAATGGGAGGGCATGGTAGGCGG ********************** ************************** ********** HS_haplotype1 AAGAAGGCACCTCTGGTCTAGCGTTTTAAAACAGAATCGCTGTTCCCCAGGGTCCTAGCC HS_assemblymutate_np1212 AAGAAGGCACCTCTGGTCTAACGTTTTAAAACAGAATCGCACCTCCCCAGGGTCCTAGCC HS_haplotype2 AAGAAGGCACCTCTGGTCTAACGTTTTAAAACAGAATCGCACCTCCCCAGGGTCCTAGCC ******************** ******************* ***************** HS_haplotype1 AAGCATGAATATTTGCTGCCACAACCAAGGCTCAAGACTCTGAATTGACTCTCGACCAGC HS_assemblymutate_np1212 AAGCATGAATATTTGCTGCCACAACCAAGGCTCAAGACTCTGAATTGACTCTCGACCAGC HS_haplotype2 AAGCATGAATATTTGCTGCCACAACCAAGGCTCAAGACTCTGAATTGACTCTCGACCAGC ************************************************************ HS_haplotype1 GCATATATTTCAAATTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA HS_assemblymutate_np1212 GCATATATTTCAAATTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA HS_haplotype2 GCATATATTTCAAATTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA ************************************************************ HS_haplotype1 GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA HS_assemblymutate_np1212 GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA HS_haplotype2 GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA ************************************************************ HS_haplotype1 AAGAAATGTGGACCAGGGAGCTAATCGATGTGAGACTCTAGGAGAGGGGTCTCCATTAGA HS_assemblymutate_np1212 AAGAAATGTGGACCAGGGAGCTAATCGACGTGAGACTCTAGGAGAGGGGTCTCCATTAGA HS_haplotype2 AAGAAATGTGGACCAGGGAGCTAATCGACGTGAGACTCTAGGAGAGGGGTCTCCATTAGA **************************** ******************************* HS_haplotype1 GACAGGAGATGTTTTAGAGGCCCAGCTAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA HS_assemblymutate_np1212 GACAGGAGATGTTTTAGAGGCCCAGCTAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA HS_haplotype2 GACAGGAGATGTTTTAGAGGCCCAGCTAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA ************************************************************ HS_haplotype1 CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA HS_assemblymutate_np1212 CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA HS_haplotype2 CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA ************************************************************ HS_haplotype1 TTATTAATTTTTTCTGTAAGTGCTGACTTCATAAAGATAAATTATTATCCGCCTACAGGC HS_assemblymutate_np1212 TTATTAATTTTTTCTGTAAGTGCTGACTTCATAAAGATAAATTATTATCCGCCTACAGGC HS_haplotype2 TTATTAATTTTTTCTGTAAGTGCTGACTTCATAAAGATAAATTATTATCCGCCTACAGGC ************************************************************ HS_haplotype1 TGGAGAATGTTTGGATATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCC HS_assemblymutate_np1212 TGGAGAATGTTTGGAAATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCA HS_haplotype2 TGGAGAATGTTTGGAAATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCA *************** ******************************************* HS_haplotype1 GGATTGCTTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA HS_assemblymutate_np1212 GGATTGCTTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA HS_haplotype2 GGATTGCCTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA ******* **************************************************** HS_haplotype1 GAAAAAATGGGCATTTAAGTCCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC HS_assemblymutate_np1212 GAAAAAATGGGCATTTAAGTCCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC HS_haplotype2 GAAAAAATGGGCATTTAAGACCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC ******************* **************************************** HS_haplotype1 CCAAGCTGTGGACAGGTCACTGAGAGGTATATGTTTTAACTGCAAACTTGTATTAATTGG HS_assemblymutate_np1212 CCAAGCTGTGGACAGGTCACTGAGAGGTATATGTTTTAACTGCAATCTTGTATTAATCGG HS_haplotype2 CCAAGCTGTGGACAGGTCACTGAGAGGTATATGTTTTAACTGCAATCTTGTATTAATCGG ********************************************* *********** ** HS_haplotype1 GTGACTGACTTGAGGCTGTCACTGTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG HS_assemblymutate_np1212 GTGACTGACTTGAGGCTGTCACTTTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG HS_haplotype2 GTGACTGACTTGAGGCTGTCACTTTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG *********************** ************************************ HS_haplotype1 TGCCCTCCTTCGGGTGAGCTTGGGTCACTACTACAGGAAGAATGAGTATAAATTGCTGAG HS_assemblymutate_np1212 TGCCCTCCTTCGGGTGACCTTGGGACACTACTACAGGAAGAATGAGTATAAATTGCTGAG HS_haplotype2 TGCCCTCCTTCGGGTGACCTTGGGACACTACTACAGGAAGAATGAGTATAAATTGCTGAG ***************** ****** *********************************** HS_haplotype1 TTTCATGGATCTGACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA HS_assemblymutate_np1212 TTTCATGGATTTCACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA HS_haplotype2 TTTCATGGATTTCACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA ********** * *********************************************** HS_haplotype1 TTCTTCTCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG HS_assemblymutate_np1212 TTCTTCCCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG HS_haplotype2 TTCTTCCCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG ****** ***************************************************** HS_haplotype1 TAAATTCTTCTCCCCGTCTACCACGGGTTTTGAACTGATGCGCTCAGTACTCAGATGGCT HS_assemblymutate_np1212 TAAATTCTTCACCCCTTCTACCACGGGTTTTGAACTGATGGGCTCAGTACTCAGATGGCA HS_haplotype2 TAAATTCTTCACCCCTTCTACCACGGGTTTTGAACTGATGGGCTCAGTACTCAGATGGCA ********** **** ************************ ****************** HS_haplotype1 AGATGTTTAAACACCACATTTCTTGCCTCAATAACTGGTCAGGGGTAGTGGAGAGGGTTT HS_assemblymutate_np1212 AGGTGTTTAAACACCACATTTCTTGCCTCAATTACTGGTCTGGGGTAGTGGAGAGGGTTT HS_haplotype2 AGGTGTTTAAACACCACATTTCTTGCCTCAATTACTGGTCTGGGGTAGTGGAGAGGGTTT ** ***************************** ******* ******************* HS_haplotype1 GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACAGA HS_assemblymutate_np1212 GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACGGA HS_haplotype2 GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACGGA ********************************************************* ** HS_haplotype1 TGAACCCTATGCCATTCTTATACATGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA HS_assemblymutate_np1212 TGAACCCTATGCCATTCTTATACAAGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA HS_haplotype2 TGAACCCTATGCCATTCTTATACAAGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA ************************ *********************************** HS_haplotype1 CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATTTTTTGTCTGTATCTGTTAACTTCA HS_assemblymutate_np1212 CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATCTTTTGTCTGTATCTGTTAACTTCA HS_haplotype2 CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATCTTTTGTCTGTATCTGTTAACTTCA *********************************** ************************ HS_haplotype1 GGCAAATCAAAAAACATGGGGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC HS_assemblymutate_np1212 GGCAAATCAAAAAACATGGGGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC HS_haplotype2 GGCAAATCAAAAAACATGGGGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC ************************************************************ HS_haplotype1 ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG HS_assemblymutate_np1212 ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG HS_haplotype2 ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG ************************************************************ HS_haplotype1 TGCCTTAGTTAGCTATAATAGGAGCAGCTACTCATTTGACACATGATTAAACGAATGCAT HS_assemblymutate_np1212 TGCCTTAGTTAGCTATAATAGGAGCAGCTACTCATTTGACACATGTTTAAACGAATGCAT HS_haplotype2 TGCCTTAGTTAGCTATAATAGGAGCTGCTACTCATTTGACACATGTTTAAACGAATGCAT ************************* ******************* ************** HS_haplotype1 AGACCCCCATTTCAACTCAGGTGGCTAATATGGTAAACCTATTTGTATGACCTTGGTTTG HS_assemblymutate_np1212 AGACCCCCATTTCAACTCAGGTGGCTAATATGGTTAACCTATTTGTATGACCTGGGTTTG HS_haplotype2 AGACCCCCATTTCAACTCAGGTGGCTAATATGGTTAACCTATTTGTATGACCTGGGTTTG ********************************** ****************** ****** HS_haplotype1 TCCCACTGCAAACGGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT HS_assemblymutate_np1212 TCCCCCTGCAAACAGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT HS_haplotype2 TCCCCCTGCAAACAGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT **** ******** ********************************************** HS_haplotype1 GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCACCAGTTCCCGAGTAT HS_assemblymutate_np1212 GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCACCAGTTCCCGAGTAT HS_haplotype2 GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCATCAGTTCCCGAGTAT ********************************************* ************** HS_haplotype1 CTAAAAAATGTCTCACACTCTCTTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT HS_assemblymutate_np1212 CTAAAAAATGTCTCACACTCTCTTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT HS_haplotype2 CTAAAAAATGTCTCACACTTTCCTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT ******************* ** ************************************* HS_haplotype1 CAAAGTATTATAATGGCCCAAATAAGCATACAGGAGGCAACAGACAGGGGTTAGCCGCAT HS_assemblymutate_np1212 CAAAGTATTATAATGGCCCAAATAAGCATACAGGAGGCAACAGAAAGGGGTTAGCCGCAT HS_haplotype2 CAAAGTATTATAATGGCCCAAATAAGCATACAGGAGGCAACAGAAAGGGGTTAGCCGCAT ******************************************** *************** HS_haplotype1 GTGGGAGGTAATATACTACTTGCCTCTTCATTTAAACATATGAGATCTTGGTAAGTCTAT HS_assemblymutate_np1212 GTGGGAGGTAATATACTATTTGCCTCTTCATTTAAACATATGATATCTTGGTAAGTCTAT HS_haplotype2 GTGGGAGGTAATATACTATTTGCCTCTTCATTTAAACATATGATATCTTGGTAAGTCTAT ****************** ************************ **************** HS_haplotype1 TATCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA HS_assemblymutate_np1212 TACCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA HS_haplotype2 TACCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA ** ********************************************************* HS_haplotype1 TGTGGCGCTCTGCAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG HS_assemblymutate_np1212 TGTGGCGCTCTGTAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG HS_haplotype2 TGTGGCGCTCTGTAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG ************ *********************************************** HS_haplotype1 CCTCACCTTAGAACGACTTTCTCAATTCTCCCTGACGCCCTAACATGTGGGTGAGGCTTT HS_assemblymutate_np1212 CCTCACCTTAGAACCACTTTCTCAATTCTCCCTGACGCCCTAACATGTGGGTGAGCCTTT HS_haplotype2 CCTCACCTTAGAACCACTTTCTCAATTCTCCCTGACGCCCTAACATGTGGGTGAGCCTTT ************** **************************************** **** HS_haplotype1 ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCGCTGGGAACTTAGCC HS_assemblymutate_np1212 ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCTCTGGGAACTTAGCC HS_haplotype2 ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCTCTGGGAACTTAGCC ********************************************* ************** HS_haplotype1 TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT HS_assemblymutate_np1212 TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT HS_haplotype2 TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT ************************************************************ HS_haplotype1 GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT HS_assemblymutate_np1212 GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT HS_haplotype2 GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT ************************************************************ HS_haplotype1 AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC HS_assemblymutate_np1212 AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC HS_haplotype2 AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC ************************************************************ HS_haplotype1 TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCATAGTAAGTA HS_assemblymutate_np1212 TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCATAGTAAGTA HS_haplotype2 TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCCTAGTAAGTA ************************************************** ********* HS_haplotype1 CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA HS_assemblymutate_np1212 CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA HS_haplotype2 CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA ************************************************************ HS_haplotype1 GCCAAAGTGCTGAGGTCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAGTCGAG HS_assemblymutate_np1212 GCCAAAGTGCTGAGGCCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAATAGAG HS_haplotype2 GCCAAAGTGCTGAGGCCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAATAGAG *************** ************************************** * *** HS_haplotype1 CGATTTAGCCATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT HS_assemblymutate_np1212 CGATTTAGCTATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT HS_haplotype2 CGATTTAGCTATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT ********* ************************************************** HS_haplotype1 GGGGACTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCTTCTTAAACAAATTAT HS_assemblymutate_np1212 GGGGACTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCTTCTTAAACAAATTAT HS_haplotype2 GGGGGCTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCATCTTAAAAAAATTAT **** *************************************** ******* ******* HS_haplotype1 CTTTGAATTTTCTATTCACTTGCTTGTTCAAACCATTATTGTGGCCAGTTGAGACATAAA HS_assemblymutate_np1212 CTTTGAATTTTCTATTCACTTGCTTGTTCAAACCATTATTGTGGCCAGTTGAGACATAAA HS_haplotype2 CTTTGAATTTTCTATACACTTGCTTGTTCAAACCATCATTGTGGCCAGTTGAGACATAAA *************** ******************** *********************** HS_haplotype1 TACTCTAACAAGGCAGGAGGAAGCAGTGACATGGGTGAGACCTACCTTGCCATATAGTAG HS_assemblymutate_np1212 TACTCTAATAAGGCAGGAGGAAGCAGTGACATGGGTGAGACCTACCTTGCCATATAGTAG HS_haplotype2 TACTCTAATAAGGCAGGAGGAAGCAGTGAGATGGGGGAGACCTACCTTGCCATATAGTAG ******** ******************** ***** ************************ HS_haplotype1 ACTGGTAAGGTTCTTATATGCGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC HS_assemblymutate_np1212 ACTGGTAAGGTTCTTATATGCGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC HS_haplotype2 ACTGGTAAGGTTCTTATATGCGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC ************************************************************ HS_haplotype1 ACAAAATATGTTCTGCGCTGGCAATCTCTGGAGGGGACCATCAGTGAGTGAAAACATTAA HS_assemblymutate_np1212 ACAAAATATGTTCTGCGCTGGCAATCTCTGGAGGGGACCATCAGTGAGTGAAAACATTAA HS_haplotype2 ACAAAATATGTTCTGTGCTGGCACTCTCTGGAGGGGACCATCAGTGGGTGAAAACATTAA *************** ******* ********************** ************* HS_haplotype1 GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCTACGTGGGAGAGGGAGTTCTAG HS_assemblymutate_np1212 GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCGACGTGGGACAGGGAGTTCTAG HS_haplotype2 GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCGACGTGGGACAGGGAGTTCTAG ************************************** ******** ************ HS_haplotype1 ATGTGGGTCTGTGCATTCCATGCTTGGAGTAAATATAGAACTATGCAAGAAGTGAATACA HS_assemblymutate_np1212 ATGTGGGTCTGTGCGTTCCATACTAGGAGTATATATAGAACTATGCAAGAAGTGAATACA HS_haplotype2 ATGTGGGTCTGTGCGTTCCATACTAGGAGTATATATAGAACTATGCAAGAAGTGAATACA ************** ****** ** ****** **************************** HS_haplotype1 AAGTGAGAGGGAAATAAATCGTCGCTTAAAGAAAGTCAGGGCAGGACTGTGTCACCCAAC HS_assemblymutate_np1212 AAGTGGGAGGGAAATAAATCGTCGCTTAAAGAAAGTCAGGGCAGGACTGTGTCACCCAAC HS_haplotype2 AAGTGGGAGGGAAATAAATCGTCGCTTAAAGAGAGTCAGGGCAGGACTGTGTCACCCAAC ***** ************************** *************************** HS_haplotype1 GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAATCGCTCAATTTTG HS_assemblymutate_np1212 GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAATCGCTCAATTTTG HS_haplotype2 GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAGTCGCACAATTTTG ********************************************** **** ******** HS_haplotype1 AATTGCTCAATTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA HS_assemblymutate_np1212 AATTGCTCAATTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA HS_haplotype2 AATTGCTCAACTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA ********** ************************************************* HS_haplotype1 TCATCAGGTGATATGAATTGTTTTATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC HS_assemblymutate_np1212 TCATCAGGTGATATGAATTGTTTTATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC HS_haplotype2 TCATCAGGTGATATGAATTGTTATATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC ********************** ************************************* HS_haplotype1 AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT HS_assemblymutate_np1212 AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT HS_haplotype2 AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT ************************************************************ HS_haplotype1 CAGCGACAGATATCAGACTCTGAAGGAACTTAGACTTCCTGTCACATTTTTAAGGGGCAA HS_assemblymutate_np1212 CAGCGACAAATATCAGACTCTGAAGGAACTTAGACTTCCTGTCACATTTTTAAGGGGCAA HS_haplotype2 CAGCGACAAATATCAGACTCTGAAGGAACTTAGACTTCCTGTCACATTTCTAAGGGGCAA ******** **************************************** ********** HS_haplotype1 GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCATTCTATTAAA HS_assemblymutate_np1212 GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCATTCTATTAAA HS_haplotype2 GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCACTCTGTTAAA ************************************************** *** ***** HS_haplotype1 ACATAGGCATTTGGAAGGTTTTATATAGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC HS_assemblymutate_np1212 ACATAGGCATTTGGAAGGTTTTATATAGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC HS_haplotype2 AAATAGGCATTTGGAAGGTTATATATAGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC * ****************** *************************************** HS_haplotype1 CCACAGCTGAAGATGCACTTTTTCCTTCTCATTTAGTGACAGGACTTTTTGGACTAAAAG HS_assemblymutate_np1212 CCACAGCTGTAGATGCACTTTTTCCTTCTCATTTAGTGACAGGACTTTTTAGACTAAAAG HS_haplotype2 CCACAGCTGTAGATGCACTTTTTCCTTCTCATTTAGTGACAGGACTTTTTAGACTAAAAG ********* **************************************** ********* HS_haplotype1 GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA HS_assemblymutate_np1212 GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA HS_haplotype2 GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA ************************************************************ HS_haplotype1 TTACATTGCATCTGGATGTATATTCCGGGAGCGGAGTTTTCTTGCTCATCAAAAAACCGT HS_assemblymutate_np1212 TTACATTCCATCTGTATGTATATTCCGGGAGCTGAGTTTTCTTGCTCATCAAAAGACAGT HS_haplotype2 TTACATTCCATCTGTATGTATATTCCGGGAGCTGAGTTTTCTTGCTCATCAAAAGACAGT ******* ****** ***************** ********************* ** ** HS_haplotype1 AGCTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT HS_assemblymutate_np1212 AGTTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT HS_haplotype2 AGTTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT ** ********************************************************* HS_haplotype1 ATACTAGACAAACCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT HS_assemblymutate_np1212 ATACTAGACAAGCCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT HS_haplotype2 ATACTAGACAAGCCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT *********** ************************************************ HS_haplotype1 TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCCGGACAGGTGCCACCTTTCACCTAA HS_assemblymutate_np1212 TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCAGGACAGGTGCCACCTTTCACCTAA HS_haplotype2 TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCAGGACAGGTGCCACCTTTCACCTAA *********************************** ************************ HS_haplotype1 AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA HS_assemblymutate_np1212 AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA HS_haplotype2 AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA ************************************************************ HS_haplotype1 GCCTCATTCCCCCATCACGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAAATGGTGAAA HS_assemblymutate_np1212 GCCTCATTCCCCCATCAGGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAAATGGTGAAA HS_haplotype2 GCTTCATTCCCCCATCAGGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAGATGGTGAAA ** ************** ******************************** ********* HS_haplotype1 ACTACAGTCATTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT HS_assemblymutate_np1212 ACTACAGTCATTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT HS_haplotype2 ACTACCGTCATTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT ***** ****************************************************** HS_haplotype1 TGGCAACAAGAGAGAGGACATGCCTTGCTAATTTAATTTTTAAACCAGCTGCTGAGTTGC HS_assemblymutate_np1212 TGGCAACAAGAGAGAGGACATGCCTTGCTAATTTAATTTTTAAACCAGCTGCTGAGTTGC HS_haplotype2 TGGCAACAAGAGAGAGGACATGCCTTGCTAATTTAATTTTTAAACCAGCTGCTGAGTTGC ************************************************************ HS_haplotype1 CAGGTCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA HS_assemblymutate_np1212 CAGGTCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA HS_haplotype2 CAGGTCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA ************************************************************ HS_haplotype1 AATCTGGGGGATTACCCGCCTGCCCCGCCCCCACCCAAAATATATATTTTTAATGGTGGC HS_assemblymutate_np1212 AATCTGGGGGATTCCCCGCCTGCCCAGCCCCCACCCAAAATATATATTTTTAATGGTGGC HS_haplotype2 AATCTGGGGGATTCCCCGCCTGCCCAGCCCCCACCCAAAATATATATTTTTAATGGTGGC ************* *********** ********************************** HS_haplotype1 AGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG HS_assemblymutate_np1212 CGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG HS_haplotype2 CGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG *********************************************************** HS_haplotype1 GAGGTGGGAAGAACTTGATTGTGGTTCCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAG HS_assemblymutate_np1212 GAGGTGGGGAGAACTTGATTGTGGTTCCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAA HS_haplotype2 GAGGTGGGGAGAACTTGATTGTGGTTCCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAA ******** ************************************************** HS_haplotype1 ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTTAGACCATGCCTGGCCTGTCGCCA HS_assemblymutate_np1212 ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTCAGACCAGGCCTGGCCTGTCGCCA HS_haplotype2 ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTCAGACCAGGCCTGGCCTGTCGCCA ************************************ ****** **************** HS_haplotype1 CATATCGCTGAAATCTCTCAGGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT HS_assemblymutate_np1212 CATATCGCTGAAATCTCTCAGGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT HS_haplotype2 CATATCGCTGAAATCTCTCAAGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT ******************** *************************************** HS_haplotype1 GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA HS_assemblymutate_np1212 GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA HS_haplotype2 GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA ************************************************************ HS_haplotype1 AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG HS_assemblymutate_np1212 AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG HS_haplotype2 AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG ************************************************************ HS_haplotype1 GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCTGCTGGACTAGGAGAGGGATCTCTTCC HS_assemblymutate_np1212 GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCTGCTGGACTAGGAGAGGGATCTCTTCC HS_haplotype2 GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCAGCTGGACTAGGAGAGGGATCTCTTCC ********************************* ************************** HS_haplotype1 CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG HS_assemblymutate_np1212 CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG HS_haplotype2 CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG ************************************************************ HS_haplotype1 CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTTCAGCAGCTTTA HS_assemblymutate_np1212 CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTTCAGCAGCTTTA HS_haplotype2 CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTCCAGCAGCTTTA ************************************************ *********** HS_haplotype1 GATTGTGTGTTCAGGAGTGATTCTCATTTATGAAGGAGACTCCTGCCAGGATTTACCCTC HS_assemblymutate_np1212 GATTGTGTGTTCAGGAGTGATTCTCATTTATGAAGGAGACTCCTGCCAGGATTTACCCTC HS_haplotype2 GATTGTGTGTTCAGGAGTGATTCTCATTTATGAAGGAGACTCCTGCCAGGATTTACCCTC ************************************************************ HS_haplotype1 TTGTTTTGTCCAGGAGTCGCCACCAAGGGAAAGGTGACAACCCCATGCCTCCAGAGAAAA HS_assemblymutate_np1212 TTGTTTTGTCCAGGAGTCGCCACCAAGGGAAAGGTGACAACCCCATGCCTCCAGAGAAAA HS_haplotype2 TTGTTTTGTCCAGGAGTCGCCACCAAGGGAAAGGTGACAACCCCATGCCTCCAGAGAAAA ************************************************************ HS_haplotype1 TTACCATGTTAATTTTCATGCAGGATGGAAACAGCAGTGTTTGAAATTTAGTTTGGGGAA HS_assemblymutate_np1212 TTACCATGTTAATTTTCATGCAGGATGGAAACAGCAGTGTTTGAAATTTAGTTTGGGGAA HS_haplotype2 TTACCATGTTAATTTTCATGCAGGATGGAAACAGCAGTGTTTGAAATTTAATTTGGGGAA ************************************************** ********* HS_haplotype1 GACTAATATGCTTGAAGTAGAAGGGCAAGAACTGGAGGCGGGTTACGCCTCGGCGCCTCT HS_assemblymutate_np1212 GACTAATATGCTTGAAGTAGAAGGGCAAGAACTGGAGGCGGGTTACGCCTCGGCGCCTCT HS_haplotype2 GACTAATATGCTTGAAGTAGAAGGGCAAGAAGTGGAGGCGGGTTACGCCTCGGCGCCTCT ******************************* **************************** HS_haplotype1 GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT HS_assemblymutate_np1212 GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT HS_haplotype2 GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT ************************************************************ HS_haplotype1 TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA HS_assemblymutate_np1212 TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA HS_haplotype2 TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA ************************************************************ HS_haplotype1 GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGACCACCACAGAGCTTTTACATG HS_assemblymutate_np1212 GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGACCACCACAGAGCTTTTACATG HS_haplotype2 GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGAGCACCACAGAGCTTTTACATG *************************************** ******************** HS_haplotype1 GAGTTAAAATAAGTTTTAGGTCAAGGACAGAGGTGTCCTCTGAACTGCCTTGATGGGCCA HS_assemblymutate_np1212 GAGTTAAAATAAGTGTTTGGTCAAGGAGAGAGGTGTCTTCTGAACTGCCTTGATGGGCCA HS_haplotype2 GAGTTAAAATAAGTGTTTGGTCAAGGAGAGAGGTGTCTTCTGAACTGCCTTGATGGGCCA ************** ** ********* ********* ********************** HS_haplotype1 GGACCTCAGGCATAAATATTAGCTTTGCCTTCACTGAATATTTCAAGTTCGGCTGGAAGT HS_assemblymutate_np1212 GGACCTCAGGCATAAATATTAGCTTTGCCTTCCCTGAATATTTCAAGTTCGGCTGGAAGT HS_haplotype2 GGACCTCAGGCATAAATATTAGCTTTGCCTTCCCTGAATATTTCAAGTTCGGCTGGAAGT ******************************** *************************** HS_haplotype1 TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT HS_assemblymutate_np1212 TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT HS_haplotype2 TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT ************************************************************ HS_haplotype1 TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTACTAGCTCACT HS_assemblymutate_np1212 TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTAGTAGCTCACT HS_haplotype2 TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTAGTAGCTCACT ************************************************** ********* HS_haplotype1 CCGTGCAGTTGGAAAAAGAAGAAAAGAAAGGCGGGCGGTGCAAGGAAGGTAATGAACAGC HS_assemblymutate_np1212 CCGTGCGGTTGAAAAAAGAAGAAAAGACAGGCGGGCGGTGCAAGGAAGGTAATGAACGGC HS_haplotype2 CCGTGCGGTTGAAAAAAGAAGAAAAGACAGGCGGGCGGTGCAAGGAAGGTAATGAACGGC ****** **** *************** ***************************** ** HS_haplotype1 CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATCCAGTGCTGGGCCG HS_assemblymutate_np1212 CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATCCAGTGCAGGGCTG HS_haplotype2 CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATCCAGTGCAGGGCTG ***************************************************** **** * HS_haplotype1 AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG HS_assemblymutate_np1212 AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG HS_haplotype2 AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG ************************************************************ HS_haplotype1 CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACAC HS_assemblymutate_np1212 CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACGC HS_haplotype2 CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACGC ********************************************************** * HS_haplotype1 ATGAATTCCTCTCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG HS_assemblymutate_np1212 ATGAATTCCTCTCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG HS_haplotype2 ATGAATTCCTCTCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG ************************************************************ HS_haplotype1 CTTTTAACAAGAGGCTGTGGTGCGAATTCAATGACTTAGCCTGCAGTCTGTCCTGTCTGA HS_assemblymutate_np1212 CTTTTAACAAGAGGCTGTGGTGCGAATTCAATGACTTAGCCTGCAGTCTGTCCTGTCTGA HS_haplotype2 CTTTTAACAAGAGGCTGTGGTGCTACTTCAATGACTTAGCCTGCAGTCTGTCCTGACTGA *********************** * ***************************** **** HS_haplotype1 CTGTAGGTGAATGGGGATGCTTTTTTTTTGTGATGTACTCACTGGAAAACTAGCCGAGAG HS_assemblymutate_np1212 CTGTAGGTGAATGGGGATGCTTTTTTTTTGTGATGTACTCACTGGAAAACTAGCCGAGAG HS_haplotype2 CTGTAGGTGAATGGGGATGCTTGTTTTTTATGATGTACTCACTGGAAAACTAGCCGAGAG ********************** ****** ****************************** HS_haplotype1 GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC HS_assemblymutate_np1212 GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC HS_haplotype2 GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC ************************************************************ HS_haplotype1 CAGTCACCACAGCCTCCTTCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC HS_assemblymutate_np1212 CAGTCACCACAGCCTCCTTCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC HS_haplotype2 CAGTCACCACAGCCTCCTGCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC ****************** ***************************************** HS_haplotype1 ACATCATTCTTTTTTGAGCAGCCTCCCCTTGTTCCTGGTGTGGGTGCAAGTTCACATGGC HS_assemblymutate_np1212 ACATCATTCTTTTTTGAGCAGCCTCCCCTTGTTCCTGGTGTGGGTGCAAGTTCACATGGC HS_haplotype2 ACATCATTCTTTTTCGAGCAGCCTCCCCTTGTTCCTTGTGTGGGTTCAAGTTCACATGGC ************** ********************* ******** ************** HS_haplotype1 TCATGCATTCAATACAATGGAAGCCCTATTGATATGATCCTCATGTATCTGCTTTTGATA HS_assemblymutate_np1212 TCATGCATTCAATACAATGGAAGCCCTATTGATATGATCCTCATGTATCTGCTTTTGATA HS_haplotype2 TCATGCATTCAAAACAGCGGAAGCCCTAGTGATATGATCCTCATGTATCTGCTTTTGATA ************ *** ********** ******************************* HS_haplotype1 TTTTCATTAATCCACCCGCCCAGCTGGGCTCAGTCTGAACATTGTAAAGTTCCCTGAACA HS_assemblymutate_np1212 TTTTCATTAATCCACCCGCCCAGCTGGGCTCAGTCTGAAAATTGTAAAGTTCCCTGAACA HS_haplotype2 TTTTAATTAATCCACCCGCCCAGCTGGGCTCAGTCTGAAAATTGTAAAGTTCCCTGAACA **** ********************************** ******************** HS_haplotype1 TCCCCTCATGCTTGCAAATGAATTTTTCTAGGATTGCTCCACCCAGCCTGCGTAGTGAGG HS_assemblymutate_np1212 TCCCCTCATGCTTGCAAATGAATTTTTCTAGGATTGCTCCACCCAGCCTGCGTAGTGAGG HS_haplotype2 TCCCCTCATGCTTGCAAATGAATTTTTCTAGGATTGCTCCACCCAGCCTGCGTAGTGAGG ************************************************************ HS_haplotype1 AAAGAAAACAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC HS_assemblymutate_np1212 AAAGAAAACAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC HS_haplotype2 AAAGAAAACAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC ************************************************************ HS_haplotype1 TTTGAAATGAAATATATCTGATTCTGATGATGAAGCAGGCCTCACACATGTTTACTTCAT HS_assemblymutate_np1212 TTTGAAATGAAATATATCTGATTCTGATGATGAAGCAGGCCTCACACATGTTTACTTCAT HS_haplotype2 TTTGAAATGAAATATATCTGATTCTGATGGTGAAGCAGGCCTCACACATGTTTACTTCAA ***************************** ***************************** HS_haplotype1 AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATCGAGTATATTCTCTTTTCTTT HS_assemblymutate_np1212 AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATCGAGTATATTCTCTTTTCTTT HS_haplotype2 AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATTGAGTATATTCTCTTTTCTTT *************************************** ******************** HS_haplotype1 ACCTACAGGCTGGGGTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAG HS_assemblymutate_np1212 ACCTACAGGCTGGGGTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAG HS_haplotype2 ACCTACAGGCGGGGTTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAA ********** *** ******************************************** HS_haplotype1 CATGTCTCCTCCCTACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA HS_assemblymutate_np1212 CATGTCTCCTCCCTACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA HS_haplotype2 CATGTCTCCTCCCCACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA ************* ********************************************** HS_haplotype1 AGTACCTGAATCTCTAAGCAAGTGAGTACTTTGATCTGTCTGTGCTGACTACAGTAAGTA HS_assemblymutate_np1212 TGTACCTGAATCTCTAAGCAAGTGAGTACTTTGATCTGTCTGTCCTGACTACAGTAAGTA HS_haplotype2 TGTACCTGAATCTCTAAGCAAGTGAGTGCTTTGATCTGTCTGTCCTGACTACAGTAAGTA ************************** *************** **************** HS_haplotype1 CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC HS_assemblymutate_np1212 CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC HS_haplotype2 CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC ************************************************************ HS_haplotype1 TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAAAAGACAGGCTAAAATACAGCTTTGGCC HS_assemblymutate_np1212 TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAGAAGACAGGCTAAAATACAGCTTTGGCC HS_haplotype2 TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAGAAGACAGGCTAAAATACAGCTTTGGCC ******************************** *************************** HS_haplotype1 AGCTGCACTTTGAGGGAGACCCAAACAAAGTTTTAATGTGCAGGAAGGATAACAAGTGCT HS_assemblymutate_np1212 AGCTGCACTTTGAGGGAGACCCAAACAAAGTTTTAATGTGCAGGAAGGATAACAAGTGCT HS_haplotype2 AGCTGCACTTTGAGGGAGACCCAAACAAAGTTTTAATGTGCAGGAAGGATAACAAGTGCT ************************************************************ HS_haplotype1 GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATTAG HS_assemblymutate_np1212 GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATCAG HS_haplotype2 GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATCAG ********************************************************* ** HS_haplotype1 CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA HS_assemblymutate_np1212 CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA HS_haplotype2 CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA ************************************************************ HS_haplotype1 CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGAGAGATTTTCATTTCTTGG HS_assemblymutate_np1212 CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGGGAGATTTTCCTTTCTTGG HS_haplotype2 CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGGGAGATTTTCCTTTCTTGG ***************************************** ********* ******** HS_haplotype1 CCACCGCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC HS_assemblymutate_np1212 CCACCGCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC HS_haplotype2 CCACCGCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC ************************************************************ HS_haplotype1 TCTGGACGTCACTTACAGATTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG HS_assemblymutate_np1212 TCTGGACGTCACTTACAGATTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG HS_haplotype2 TCTTGACGTCACTTACAGAGTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG *** *************** **************************************** HS_haplotype1 CGCCTGTTCATTATGTTGGTGCAAATACACATGCCAAGAATGGGGCCACAGTGCTCACCC HS_assemblymutate_np1212 CGCCTGTTCATTATGTTGGTGCAAATACACATGCCAAGAATGGGGCCACAGTGCTCACCC HS_haplotype2 CGCCTGTTCATTAAGTTGGTGCAAATATACATGCCAAGAATGGGGCCACAGCGCTCACCC ************* ************* *********************** ******** HS_haplotype1 CACAGGAGTGAGAGATGAACCACAATGAGACCATCACAATTAGGCAGAAAAGATGACTTA HS_assemblymutate_np1212 CACAGGAGTGAGAGATGAACCACAATGAGACCATCACAATTAGGCAGAAAAGATGACTTA HS_haplotype2 CACAGGAGTGAGAGATGAACCACAAGGACACCATCACAATTAGGCAGAAAAGATGACTTA ************************* ** ******************************* HS_haplotype1 CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG HS_assemblymutate_np1212 CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG HS_haplotype2 CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG ************************************************************ HS_haplotype1 ACACCACCATTTAAAGAACATTTTAAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG HS_assemblymutate_np1212 ACACCACCATTTAAAGAACATTTTGAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG HS_haplotype2 ACACCACCATTTAAAGAACATTTTGAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG ************************ *********************************** HS_haplotype1 GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTGAAGTATACATTTTCTC HS_assemblymutate_np1212 GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTGAAGTATACATTTTCTC HS_haplotype2 GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTTAAGTATACATTTTCTC ******************************************* **************** HS_haplotype1 GTTCTAGAGAGGGGAAAACCGCATGAGAGAAGGCCTGACTCTTTTAATTTTATGGCACTT HS_assemblymutate_np1212 GTTCTAGAGAGGGGAAAACCGCATGAGAGAAGGCCTGACTCTTTTAATTTTATGGCACTT HS_haplotype2 GTTCTAGAGAGGGGAAAACCGCATGAGAGAAGGCCTGACTCTTTTAATTTTATGGCACTT ************************************************************ HS_haplotype1 TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCAGCTCTGG HS_assemblymutate_np1212 TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCAGCTCTGG HS_haplotype2 TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCACCTCTTG ***************************************************** **** * HS_haplotype1 AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT HS_assemblymutate_np1212 AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT HS_haplotype2 AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT ************************************************************ HS_haplotype1 TCACTTCAGTGTCATTTATTACCATACATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT HS_assemblymutate_np1212 TCACTTCAGTGTCATTTATTACCATAAATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT HS_haplotype2 TCACTTCAGTGTCATTTATTACCATAAATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT ************************** ********************************* HS_haplotype1 CACACACGGTGGGGTGTACTTTCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACAT HS_assemblymutate_np1212 CACACACGGTGGGGTGTACTATCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACAT HS_haplotype2 CACACACGGTGGGGTGTACTATCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACAT ******************** *************************************** HS_haplotype1 TGCCACCGACTCTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC HS_assemblymutate_np1212 TGCCACCGACCCTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC HS_haplotype2 TGCCACCGACCCTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC ********** ************************************************* HS_haplotype1 GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC HS_assemblymutate_np1212 GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC HS_haplotype2 GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC ************************************************************ HS_haplotype1 GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC HS_assemblymutate_np1212 GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC HS_haplotype2 GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC ************************************************************ HS_haplotype1 AAAATGTGGTGGAGAAATAGTCAGCATAAATTGGACAATCCTGTGCCTAGACAAAGTGCA HS_assemblymutate_np1212 AAAATGTGGTGGAGAAATAGTCAGCATAAATTGGACAATCCTGTGCCTAGACAAAGTGCA HS_haplotype2 AAAACGTGGTGGAGAAATAGTCCGCATAAATTGGACAATCCTGTGCCTAGACAGAGTGCA **** ***************** ****************************** ****** HS_haplotype1 AGAGGTTTGATATTAGAAGAGCTGAATGAATATGAAAGCAGCGGCGCAGTGACTTCTTCC HS_assemblymutate_np1212 AGAGGTTTGATATTAGAAGAGCTGAATGAATATGAAAGCAGCGGCGCAGTGACTTCTTCC HS_haplotype2 AGAGGTTTGATATTAGATGAGCTGAATGAATATGAAAGCAGCGGCGCAGTGACTTCTTCC ***************** ****************************************** HS_haplotype1 TTGAACTCTGTGGCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC HS_assemblymutate_np1212 TTGAACTCTGTGGCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC HS_haplotype2 TTGCACTCTGTGGCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC *** ******************************************************** HS_haplotype1 AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA HS_assemblymutate_np1212 AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA HS_haplotype2 AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA ************************************************************ HS_haplotype1 GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA HS_assemblymutate_np1212 GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA HS_haplotype2 GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA ************************************************************ HS_haplotype1 TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT HS_assemblymutate_np1212 TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT HS_haplotype2 TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT ************************************************************ HS_haplotype1 GAGATGACCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT HS_assemblymutate_np1212 GAGATGTCCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT HS_haplotype2 GAGATGTCCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT ****** ***************************************************** HS_haplotype1 TAATATTTGTATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG HS_assemblymutate_np1212 TAATATTTGGATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG HS_haplotype2 TAATATTTGGATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG ********* ************************************************** HS_haplotype1 CCACCCAGATAAATATAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG HS_assemblymutate_np1212 CCACCCAGATAAATATAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG HS_haplotype2 CCACCCAGATAAATAGAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG *************** ******************************************** HS_haplotype1 AGATTATGGTTCTGAAAATTGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT HS_assemblymutate_np1212 AGATTATGGTTCTGAAAATTGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT HS_haplotype2 AGATTATGGTTCTGAAAATGGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT ******************* **************************************** HS_haplotype1 GAGGAATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT HS_assemblymutate_np1212 GAGGAATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT HS_haplotype2 GAGGCATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT **** ******************************************************* HS_haplotype1 GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGGGGGTTATACAGAGGAAG HS_assemblymutate_np1212 GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGTGGGTTATACAGAGGAAG HS_haplotype2 GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGTGGGTTATACAGAGGAAG ****************************************** ***************** HS_haplotype1 ATCCTTTTGTGAGAGCTCATCATCTTCCGAGCCTTTCTTAGAAATTGTAATCCAGGCAGG HS_assemblymutate_np1212 ATCCTTTTGTGAGAGCTCATCATCTTCCGAGCCTTTCTTAGAAATTGTAATCCAGGCAGG HS_haplotype2 ATCCTTTTGTGAGAGCTCATCATCTTCCGAGCCTTTCTTAGAAATTGTAATCCAGGCAGG ************************************************************ HS_haplotype1 ATTACTGATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCTGAGATGGA HS_assemblymutate_np1212 ATTACTTATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCTGAGATGGA HS_haplotype2 ATTACTTATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCAGAGATGGA ****** ******************************************** ******** HS_haplotype1 AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCTCACATCCGCCG HS_assemblymutate_np1212 AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCCCACATCCTCCG HS_haplotype2 AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCCCACATCCTCCG ************************************************ ******* *** HS_haplotype1 CCAGGAAAGCATCTCCTTGCTCTACCCTTGTTCCGAGACTGACCCCGTCGCCTCTTCTTG HS_assemblymutate_np1212 CCAGGAAAGCATGTCCTTGCTCTACCCTTGTTCCGAGACTGACCCCGTCGCCTCTTCTTG HS_haplotype2 CCAGGAAAGCATGTCCTTGCTCTACCCTTGTTCCGAGACTGACCCCGTCGCCTCTTCTTG ************ *********************************************** HS_haplotype1 CAGGAAAAGTCCTGTACCCAATTTAGATCGCAGTGGCAGGATGTTATCTCTAGGAACGTA HS_assemblymutate_np1212 AAGGAAAAGTCCTGTACCCAATTTCGATCGCAGTGGCAGGATGTTATCTCTAGGAACGTA HS_haplotype2 AAGGAAAAGTCCTGTACCCAATTTCGATCGCAGTGGCTGGATGTAATCTCTAGGAACGTA *********************** ************ ****** *************** HS_haplotype1 GGAAGAAAGGAATTCCCGCAGGGGAGGTAATTATTACTAAGGAATTGCAGCGACCCACGA HS_assemblymutate_np1212 GGAAGAAAGGAATTCCCGCAGGGGAGGTAATTATTACTAAGGAATTGCAGCGACCCACGA HS_haplotype2 GGGAGAAAGGAATTCCCGCAGGGGAGGTAATTATTACTAAGGAATTGCAGCGACCCACGA ** ********************************************************* HS_haplotype1 TTCCACTCTTTCTATTGTATGTCTGAATCGATCTTCTGCAACCCAGCCACCTCACCCAAC HS_assemblymutate_np1212 TTCCACTCTTTCTATTGTATGTCTGAATCGATCTTCTGCAACCCAGCCACCTCACCCAAC HS_haplotype2 TTCCACTCTTTCTATTGTATGTCTGAATCGATCTTCTGCAACCCAGCCACCTCACCCAAC ************************************************************ HS_haplotype1 CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATACTCAGGAA HS_assemblymutate_np1212 CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATACTCAGGAA HS_haplotype2 CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATTCTCAGGAA *************************************************** ******** HS_haplotype1 TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA HS_assemblymutate_np1212 TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA HS_haplotype2 TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA ************************************************************ HS_haplotype1 ATTAGTCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC HS_assemblymutate_np1212 ATTAGTCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC HS_haplotype2 ATTAGGCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC ***** ****************************************************** HS_haplotype1 CAAGATAATAAAAATAAAGCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT HS_assemblymutate_np1212 CAAGATAATAAAAATAAATCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT HS_haplotype2 CAAGATAATAAAAATAAATCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT ****************** ***************************************** HS_haplotype1 TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGAAA HS_assemblymutate_np1212 TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGACA HS_haplotype2 TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGACA ********************************************************** * HS_haplotype1 CTGCCACCGGAGTGCTGCAACTAAGGCCCAGCTAATTACTCGGGGTCCCAGCTGAATGAG HS_assemblymutate_np1212 CTGCCACCGGAGTGCTGAAACTACGGCCCAGCTAATTACTCGGGGACCCAGCTGAATGAG HS_haplotype2 CTGCCACCGGAGTGCTGAAACTACGGCCCAGCTAATTACTCGGGGACCCAGCTGAATGAG ***************** ***** ********************* ************** HS_haplotype1 GCCCCCAACGTAGCCAGGCGTGATCCTAGTTTCCAGCCTCTGAGCTGAGGCTGCAGAGCT HS_assemblymutate_np1212 GCCCCCAACGTAGCCAGGCGTGATCCTAGTTTCCAGCGTCTGAGCTGAGGCTGCAGAGCT HS_haplotype2 GCCCCCAACGTAGCCAGGCGTGATCCTAGTTTCCAGCGTCTGAGCTGAGGCTGCAGAGCT ************************************* ********************** HS_haplotype1 GAGTTGAATGGCTTCATTAAATGACGGAAGTGAGAGGAGCATGTCCGGACCTCACACTCA HS_assemblymutate_np1212 GAGTTGAATGGCTTCATTAAATGACTGAAGTGAGAGGAGCATGTCCGGACCTCACACTCA HS_haplotype2 GAGTTGAATGGCTTCATTAAATGACTGAAGTGAGAGGAGCATGTCCGGACCTCACACTCA ************************* ********************************** HS_haplotype1 AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCTAAATGATAACATGGGGGGGCCACT HS_assemblymutate_np1212 AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCGAAATGATAAGATGGGGGGGCCACT HS_haplotype2 AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCGAAATGATAAGATGGGGGGGCCACT *********************************** ********* ************** HS_haplotype1 GCAGCAGTAATGTAGCATCTCAGAAGGGATTTCTTTTCATCCAAAATAATATGACACCAT HS_assemblymutate_np1212 GCAGCAGTAATGTACCATCGCAGAAGGGATTTCTTTTCATCCAATATAATATGACACCAT HS_haplotype2 GCAGCAGTAATGTACCATCGCAGAAGGGATTTCTTTTCATCCAATATAATATGACACCAT ************** **** ************************ *************** HS_haplotype1 GAGTCAGTGGGATCCAAAGGGCCACGAGGCAGGGTGTCCCAACCACCACTGAATCAATTC HS_assemblymutate_np1212 GAGTCAGTGGGATCCAAAGGGCCATGAGGCAGTGTGTCCCAACCACCACTGAATCAATTC HS_haplotype2 GAGTCAGTGGGATCCAAAGGGCCATGAGGCAGTGTGTCCCAACCACCACTGAATCAATTC ************************ ******* *************************** HS_haplotype1 AGCGAGTTCTTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCTTTT HS_assemblymutate_np1212 AGCGAGTTCCTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCGTTT HS_haplotype2 AGCGAGTTCCTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCGTTT ********* ********************************************** *** HS_haplotype1 TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGGACACCCAGGGTTC HS_assemblymutate_np1212 TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGCACACCCAGGGTTC HS_haplotype2 TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGCACACCCAGGGTTC ********************************************** ************* HS_haplotype1 CTGAGTGAATCGGGCCGCAGGGGGGAGTGGAGGCTGACCTCATCACATGAGGGGACCATG HS_assemblymutate_np1212 CTGAGTGAATCGGGCCGCAGGGGGGAGTGCAGGCTGACCTCATCACATGAGGGGACCTTG HS_haplotype2 CTGAGTGAATCGGGCCGCAGGGGGGAGTGCAGGCTGACCTCATCACATGAGGGGACCTTG ***************************** *************************** ** HS_haplotype1 AGATATAATCTTAATGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCC HS_assemblymutate_np1212 AGATATAATCTTAATGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCC HS_haplotype2 AGATATAATCTTAATGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCA *********************************************************** HS_haplotype1 AATCCTACTTTCACCTCCCCTAGGCAAAGATAGGAATGTGTGAGCAGTGGCTCACGCCAA HS_assemblymutate_np1212 AATCCTACTTTCACCTCCCCTAGGCAAAGATAGGAATGTGTGAGCAGTGGCTCACGCCAA HS_haplotype2 AATCCTACTTTCTCCTCCCCTAGGCAAAGATAGGTATGTGTGAGCAGTGGCTCACGCCAA ************ ********************* ************************* HS_haplotype1 CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT HS_assemblymutate_np1212 CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT HS_haplotype2 CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT ************************************************************ HS_haplotype1 CTGAGAAAGATGGTTAAAAAGAAATCACCCCTGTTCCTGGGGGCCAGACTTCAGGGTTCA HS_assemblymutate_np1212 CTGAGAAAGATGGTTAAAAAGAAATCAGCCCTGTTCCTGGGGGCCAGACTTCATGGTTCA HS_haplotype2 CTGAGAAAGATGGTTAAAAAGAAATCAGCCCTGTTCCTGGGGGCCAGACTTCATGGTTCA *************************** ************************* ****** HS_haplotype1 ATCCCATGCAAGACGGGCGTAGTATATGAGTAAAACAGAATTTACAGTTGGCTCAAGATC HS_assemblymutate_np1212 ATCCCATGCAAGACGGGCGTAGAATATGAGTAAAACATAATTTACAGGTGGCTCAAGTTC HS_haplotype2 ATCCCATGCAAGACGGGCGTAGAATATGAGTAAAACATAATTTACAGGTGGCTCAAGTTC ********************** ************** ********* ********* ** HS_haplotype1 CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC HS_assemblymutate_np1212 CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC HS_haplotype2 CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC ************************************************************ HS_haplotype1 TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC HS_assemblymutate_np1212 TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC HS_haplotype2 TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC ************************************************************ HS_haplotype1 AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT HS_assemblymutate_np1212 AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT HS_haplotype2 AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT ************************************************************ HS_haplotype1 CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTGAATTTTTGTTTATAGA HS_assemblymutate_np1212 CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTTAATTTTTGTTTATAGA HS_haplotype2 CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTTAATTTTTGTTTATAGA ******************************************* **************** HS_haplotype1 TTCTCTACTGTGTCTCTCCCTAAGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG HS_assemblymutate_np1212 TTCTCTACTGTGTCTCTCCCAAAGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG HS_haplotype2 TTCTCTACTGTGTCTCTCCCAAAGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG ******************** *************************************** HS_haplotype1 TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG HS_assemblymutate_np1212 TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG HS_haplotype2 TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG ************************************************************ HS_haplotype1 TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG HS_assemblymutate_np1212 TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG HS_haplotype2 TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG ************************************************************ HS_haplotype1 GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCATTGTTTAAAGTGTTGCCAGGTGGGGA HS_assemblymutate_np1212 GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCACTGTTTGAAGTGTAGCCAGGTGGGGA HS_haplotype2 GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCACTGTTTGAAGTGTAGCCAGGTGGGGA ********************************** ***** ****** ************ HS_haplotype1 GGTAAAAAGAAAGATCACTGTAGCGCGGTAGTGATTCTAAAACAGTAGGAGAAAGCTGAG HS_assemblymutate_np1212 GGTAAAAAGAAAGATCGCTGTAGCGCGGTAGTTATTCTAAAACAGTAGGAGAAAGCTGAG HS_haplotype2 GGTAAAAAGAAAGATCGCTGTAGCGCGGTAGTTATTCTAAAACAGTAGGAGAAAGCTGAG **************** *************** *************************** HS_haplotype1 ACAAAATACAGTGATCAAGAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT HS_assemblymutate_np1212 ACAAAATACAGTGATCAACAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT HS_haplotype2 ACAAAATACAGTGATCAACAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT ****************** ***************************************** HS_haplotype1 AATCCTGTTGATGGCTGTAGTCCAGACTCCACATAGATGAAGGAAGAAGAGACCTGCCTT HS_assemblymutate_np1212 AATCCTGTTGATGGCTGTAGTCCAGACTCCACATAGATGAAGGAAGAAGAGACCTGCCTT HS_haplotype2 AATCCTGTTGATGGCTGTAGTCCAGACTCCACATAGATGAAGGAAGAAGAGACCTGCCTT ************************************************************ HS_haplotype1 TTGTAGCCGGGCTGCATTATCTTCATTTACATCTATGGGAACAGATAGACCTTCGAGAGC HS_assemblymutate_np1212 TTGTAGCCGGGCTGCATTATCTTCATTTACATCTATGGGAACAGATAGACCTTCGAGAGC HS_haplotype2 TTGTAGCCGGGCTGCATTATCTTCATTTACATCTATGGGAAAAGAGAGACCTTCGAGAGC ***************************************** *** ************** HS_haplotype1 CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCTCTGAATTTTTCACCTAAAGCGGCC HS_assemblymutate_np1212 CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCTCTGAATTTTTCACCTAAAGCGGCC HS_haplotype2 CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCCCTGAATTTTTCACCAAAAGCGGCC *********************************** ************** ********* HS_haplotype1 GCTGCCCAGGCGTTGCTGTGGACCCAGTTAAGACCATCTGTGCGCAGACTGAGTAAATAA HS_assemblymutate_np1212 GCTGCCCAGGCGTTGCTGTGGGCCCAGTTAAGACCATCTGTGCGCAGACTTAGTAAATAA HS_haplotype2 GCTGCCCAGGCGTTGCTGTGGGCCCAGTTAAGACCATCTGTGCGCAGACTTAGTAAATAA ********************* **************************** ********* HS_haplotype1 AGGGCTGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTCAT HS_assemblymutate_np1212 AGGGCTGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTGAT HS_haplotype2 AGGGCTGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTGAT ********************************************************* ** HS_haplotype1 TACCAGACGCCTGTAAAGAGTGAGAGATGAGAAGGTAAGCTAATCTGAACAAAAATTAAG HS_assemblymutate_np1212 TACCAGACGCTTGTAAAGAGTGTGAGATGAGAAGGTAAGCTACTCTGAACAAAAATTAAG HS_haplotype2 TACCAGACGCTTGTAAAGAGTGTGAGATGAGAAGGTAAGCTACTCTGAACAAAAATTAAG ********** *********** ******************* ***************** HS_haplotype1 GCACCAAGTCTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTC HS_assemblymutate_np1212 GCACCAAGTTTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTT HS_haplotype2 GCACCAAGTTTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTT ********* ************************************************* HS_haplotype1 AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT HS_assemblymutate_np1212 AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT HS_haplotype2 AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT ************************************************************ HS_haplotype1 CCTGATTACAGACTTCAAAAATCCTAAAATGCCCATCAAAGATGATTGCTTCCCATTCTG HS_assemblymutate_np1212 CCTGATTACAGACTTCAAAAATCCTAAAATGCCCATCAAAGATGATTGCTTCCCTTTCTG HS_haplotype2 CCTGATTACAGACTTCAAAAATCCTAAAATGCCCATCAAAGATGATTGCTTCCCTTTCTG ****************************************************** ***** HS_haplotype1 TCCTAGGACTCAAAGGATGGGAGGCAGGGAAAAGAATGCCTGAGACTCAGTACATTAGTA HS_assemblymutate_np1212 TCCTAGGACTCAAAGGATGGGAGGCAGGGAAAAGAATGCCTGAGACTCAGTACATTAGTA HS_haplotype2 TCCTAGGACTCAAAGGATGGGAGGCAGGGAAAAGAATGCCTGAGACTCAGTACATTAGTA ************************************************************ HS_haplotype1 CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC HS_assemblymutate_np1212 CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC HS_haplotype2 CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC ************************************************************ HS_haplotype1 TAATATGCCGCTCCCAGGCCGTCGGAAAGACTATAGGTGTTATCCCTGTATGGGAGAGTT HS_assemblymutate_np1212 TAATATGCCGCTCCCAGGCCGTCGGAAAGACTATAGGTGTTATCTCTGTATGGTAGAGTT HS_haplotype2 TAATATGCTGCTCCCAGGCCGTCGGAAAGACTATAGGTGTTATCTCTGTATGGTAGAGTT ******** *********************************** ******** ****** HS_haplotype1 CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGTAACTTAGCAGTAGCCAGGA HS_assemblymutate_np1212 CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGGAACTTAGCAGTAGCCAGGA HS_haplotype2 CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGGAACTTAGCAGTAGCCAGGA **************************************** ******************* HS_haplotype1 TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTGTTCTGTTAGTATAATGG HS_assemblymutate_np1212 TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTGTTCTGTTAGTATAATGG HS_haplotype2 TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTGTTCTGTTAGTATAATGG ************************************************************ HS_haplotype1 TGAAATGTGAGGCAGGGCTAGGTCTGCGATTATGTGCGCAGCCAATTTTGTATAAATGCA HS_assemblymutate_np1212 TGAAATGTGAGGCAGGGCTAGGTCTGTGATTATGTGCGCAGCCAATTTTGTATAAATGCA HS_haplotype2 TGAAATGTGAGGCAGGGCTAGGTCTGTGATTATGTGCGCAGCCAATTTTGTATAAATGCA ************************** ********************************* HS_haplotype1 AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA HS_assemblymutate_np1212 AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA HS_haplotype2 AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA ************************************************************ HS_haplotype1 TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATATCAACGTAACCCTCCATCAGAGAGAA HS_assemblymutate_np1212 TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATCTCAACGTAACCCTCCATCAGAGAGAA HS_haplotype2 TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATCTCAACGTAACCCTCCTTCAGAGAGAA ********************************* *************** ********** HS_haplotype1 TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTGCCACTGCA HS_assemblymutate_np1212 TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTGCCACTGCA HS_haplotype2 TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTCCCACTGCA *************************************************** ******** HS_haplotype1 GTCCCATCTAGGGTTCATCACCGGGCCTGGCAGCCCAGCTACTTAATACCTTAGGATGGT HS_assemblymutate_np1212 GTCCCATCTAGGGTTCATCACCGGGCCTGGCAGCCCAGCTACTTAATACCTTAGGATGGT HS_haplotype2 GTCCCATCTAGGGTTCATCACAGGGCCTGGCAGCCCAGCTACTTAATACCTCAGGATGGT ********************* ***************************** ******** HS_haplotype1 AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCAGGCTGGGCACCGGTTATT HS_assemblymutate_np1212 AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCAGGCTGGGCACCGGTTATT HS_haplotype2 AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCTGGCTGGGCACCGGTTATT ***************************************** ****************** HS_haplotype1 TGTATTTAGAGATATTACACTAGCATACACAATAAATGTGTGTAACCTCTGCCGAGTCGC HS_assemblymutate_np1212 TGTATTTAGAGATATTACACTAGCATACACAATAAATGTGTGTAACCTCTGCCGAGTCGC HS_haplotype2 TGTATTTAGAGATATTACACTAGCATCCACAATAAATGTGTGTAACCTCTGCCGAGTCGC ************************** ********************************* HS_haplotype1 CCGCCTGGGGCCTAAAGAAACTAGCTGTCCTTCGCTCGCGCGTTTCCAGATGGTGAGGAG HS_assemblymutate_np1212 CCGCCTGGGGCCCAAAGAAACTAGCTGTCCTTCGCTCGCGCGTTCCCAGATGGTGAGGAG HS_haplotype2 CCGCCTGGGGCCCAAAGAAACTAGCTTTCCTTCGCTCGCGCGTTCCCAGATGGTGAGGAG ************ ************* ***************** *************** HS_haplotype1 CTGTTCCTCTTCCATTTTTGTAGCCATACATAGAATTTAGATGCTGAGGAGGGACGCCCC HS_assemblymutate_np1212 CTGTGCCTCTTCCATTTTTGTAGCCATACATAGAATTTGGATGCTGAGGAGGGACGCCTC HS_haplotype2 CTGTGCCTCTTCCATTTTTGTAGCCATACATAGAATTTGGATGCTGAGGAGGGACGCCTC **** ********************************* ******************* * HS_haplotype1 ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA HS_assemblymutate_np1212 ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA HS_haplotype2 ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA ************************************************************ HS_haplotype1 ATTGCTTGTGTAAACGACTGTTGCAGGAACACCAAGTATTTTCGTTAAGGAACCCCAACC HS_assemblymutate_np1212 ATTGCTTGTGTAAACGACTGTTGCTGGAACACCAAGTATTTTCGTTAAGGAACCCCAACC HS_haplotype2 ATTGCTTGTGTAAACGACTGTTGCTGGAACACCAAGTATTTTCGTTAAGGAACCCCAGCC ************************ ******************************** ** HS_haplotype1 TGGGTGACACAAGATTCTCGCTTGTATTTTTAAAAAACAAAAAAATTTTGAGTATATATC HS_assemblymutate_np1212 TGGGTGACACAAGATTCTCGCTTGTGTTTTTAAAAAACAAAAAAATTTTGAGTATATATC HS_haplotype2 TGGGTGACACTAGATTCTCGCTTGTGTTTTTAAAAAACAAAAAAATTTTGAGTATATATC ********** ************** ********************************** HS_haplotype1 CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACATCTACAGCAGGGGCTTATATCTTTTC HS_assemblymutate_np1212 CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACATCTACAGCAGGGGCTTATATCTTTTC HS_haplotype2 CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACAGCTACAGCAGGGGCTTATATCTTTTC ********************************** ************************* HS_haplotype1 ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT HS_assemblymutate_np1212 ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT HS_haplotype2 ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT ************************************************************ HS_haplotype1 AATTGGGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC HS_assemblymutate_np1212 TATTGTGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC HS_haplotype2 TATTGTGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC **** ****************************************************** HS_haplotype1 CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG HS_assemblymutate_np1212 CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG HS_haplotype2 CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG ************************************************************ HS_haplotype1 GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCATCCACTGCAGTGGTA HS_assemblymutate_np1212 GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCAACCACTGCAGTGGTA HS_haplotype2 GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCAACCACTGCAGTGGTA ********************************************* ************** HS_haplotype1 AATTCTCAAGCGATTCTTCTGAATTTGCAGTGTATGAACAGATGTAATCCCCCGTCCAGT HS_assemblymutate_np1212 AATTCTCAAGCGATTCTTCTGAATTTGCAGTGTATGAACAGATGTAATCCCCCGTCCAGT HS_haplotype2 AATTCTCAAGCGATTCTTCTGAATTTGCAGTGTATGAACAGATGTAATCCCCCGTACAGT ******************************************************* **** HS_haplotype1 GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT HS_assemblymutate_np1212 GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT HS_haplotype2 GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT ************************************************************ HS_haplotype1 TTACTCTGGCTTTTGTATTTTAAGGGTTTACTGCTTTACATTCTGCCTCCGTCTTAACTA HS_assemblymutate_np1212 TTACTCTGGCTTTTGTATTTTAAGGGTTTACTGCTTTACATTCTGCCTCCGTCTTAACTA HS_haplotype2 TTACTCTGGCTTTTGTATTTAACGGGTTTACTGCTTTAAATTCTGCCTCCGTCTTAACTA ******************** * *************** ********************* HS_haplotype1 GTAAATATGAAAATGGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC HS_assemblymutate_np1212 GTAAATATGACAATAGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC HS_haplotype2 GTAAATATGACAATAGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC ********** *** ********************************************* HS_haplotype1 ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATTAAGAATGT HS_assemblymutate_np1212 ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATCAAGAATGT HS_haplotype2 ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATCAAGAATGT *************************************************** ******** HS_haplotype1 AAGTGACCAAAAGACCCTCTTCAGTAGCGATCTAACTTTTAGAAGCACTCTCATCTGGAC HS_assemblymutate_np1212 AAGTGACCAAAAGACCCTCTTCTGTAGCGAACTAACTTTTAGAAGCACTCTCATCTGGAC HS_haplotype2 AAGTGACCAAAAGACCCTCTTCTGTAGCGAACTAACTTTTAGAAGCACTCTCATCTGGAC ********************** ******* ***************************** HS_haplotype1 AGTGAAGGCTGGTTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT HS_assemblymutate_np1212 AGTGAAGGCTGGCTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT HS_haplotype2 AGTGAAGGCTGGCTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT ************ *********************************************** HS_haplotype1 AGGTGAAAATATGTGTGATACAACAGATGAAATAGGGTAGCTACTCTTCTACATTTGCAA HS_assemblymutate_np1212 AGGTGAAAATATGTGTGATACAACAGATGAAATAGGGTAGCTACTCTTCTACATTTGCAA HS_haplotype2 AGGTGAAAATATGTGTGATACAACAGATGAAATAGGGTAGCTACTCTTCTACATTTGCAA ************************************************************ HS_haplotype1 TTGAGAAGACTCTTTCCTTAGGTATCATTGGTCCCCAGCCTGTTGGTACTGATGGACCGG HS_assemblymutate_np1212 TTGAGAAGACTCCTTCCTTAGGTATCATTGGTCCCCAACCTGTTGGGACTGATGGACCGG HS_haplotype2 TTGAGAAGACTCCTTCCTTAGGTATCATTGGTCCCCAACCTGTTGGGACTGATGGACCGG ************ ************************ ******** ************* HS_haplotype1 GGTGTGTGTATTTTAACTCCTGTAAACAACCATAATATTCAGCTCTAGGAATTCATGTTG HS_assemblymutate_np1212 GGTGTGTGTATTTTAACTCCTGTATACAACCATAATATTCAGCTCTAGAAATTCATGTTG HS_haplotype2 GGTGTGTGTATTTTAACTCCTGTATACAACCATAATATTCAGCTCTAGAAATTCAGGTTG ************************ *********************** ****** **** HS_haplotype1 CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGTCTGGGTGACA HS_assemblymutate_np1212 CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGTCTGGGTGACA HS_haplotype2 CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGGTTGGGTGACA ************************************************* ********* HS_haplotype1 TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC HS_assemblymutate_np1212 TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC HS_haplotype2 TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC ************************************************************ HS_haplotype1 GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATTCCAGGAGTTCAG HS_assemblymutate_np1212 GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATCCCAGGAGTTCAG HS_haplotype2 GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATCCCAGGAGTTCAG *********************************************** ************ HS_haplotype1 AAAGTCCAACGACTGTCCCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT HS_assemblymutate_np1212 AAAGTCCAAAGACTGTCTCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT HS_haplotype2 AAAGTCCAAAGACTGTCTCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT ********* ******* ****************************************** HS_haplotype1 GATAATCACAGGACAACTAACCAGATGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT HS_assemblymutate_np1212 GATAATCACAGGACAACTAACCAGTTGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT HS_haplotype2 GATAATCACAGGACAACTAACCAGTTGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT ************************ *********************************** HS_haplotype1 AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAATTA HS_assemblymutate_np1212 AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAATTA HS_haplotype2 AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAATTA ************************************************************ HS_haplotype1 AGGTCAGGACACGCTGCAGCTCTCCAAATGACTATAGCCTTTTCCTTCAGAAGGCAATCC HS_assemblymutate_np1212 AGGTCAGGACACGCTGCAGCTCTCCAAATGACTATAGCCTTTTCCTTCAGAAGGCAATCC HS_haplotype2 AGGTCAGGACACTCTGCAGCTCTCCAAATGACTATAGCCTTTTCCTTCAGAAGGCAATCC ************ *********************************************** HS_haplotype1 AGTCATCCGCGCCGGGCCCTGAGTGGTGAGGTGATACTGCATGAAGACAGGCCTCCAAGG HS_assemblymutate_np1212 AGTCATCCGCGCCGGGCCCTGAGTGGTGAGGTGATACTGCATGAAGACAGGCCTCCAAGG HS_haplotype2 AGTCATCCGCGCCGGGCCCTGGGTGGTGAGGTGATACTGCATGAAGACTGGCCTCCAAGG ********************* ************************** *********** HS_haplotype1 CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA HS_assemblymutate_np1212 CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA HS_haplotype2 CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA ************************************************************ HS_haplotype1 GCGAGGGAACCTGCCTCACCTCTGTTCAACGCTATGGCTGCCTGGCAAGCTTGCAGGGCA HS_assemblymutate_np1212 GCGAGGCAACCTGCCTCACCTCTGTTCAACGCTATGGCTGCCTGGCAAGCTTGCAGGGCA HS_haplotype2 GCGAGGCAACCTGCCTCACCTCTGTTCAATGCTATGGCTGCCTGGCAAGCTTGCAGGGCA ****** ********************** ****************************** HS_haplotype1 GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGGGAACAGAAGAAAT HS_assemblymutate_np1212 GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGGGAACAGAAGAAAT HS_haplotype2 GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGGGAACAGAAGAAAT ************************************************************ HS_haplotype1 ATCAATTACGTTCATCAAGGGTACTATGTTAAAGGAAATGTGTTTTAGGAGGACCCGGAC HS_assemblymutate_np1212 ATCAATTACGTTCATCAAGGGTACTATGTTAAAGGAAATGTGTTTTAGGAGGACCCGGAC HS_haplotype2 ATTAATTACGTTCATCAAGGGTACTATGTTAAAGGAAATGTGTTTTAGGAGGACCCGGAC ** ********************************************************* HS_haplotype1 AAACATGTTGTGTCTCGCTTTTTTCATACAAATGAGATCTAGAGTACTTGGCTCCACACC HS_assemblymutate_np1212 AAACATGTTGTGTCTCGCTTTTTTCATACAAATGAGATCTAGAGTACTTGGCTCCACACC HS_haplotype2 AAACATGTTGTTTCTCGCTTTTTTCATACAAATGAGATCTAGACTACTTGGCTCCACACC *********** ******************************* **************** HS_haplotype1 AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC HS_assemblymutate_np1212 AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC HS_haplotype2 AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC ************************************************************ HS_haplotype1 CCCAGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA HS_assemblymutate_np1212 CCCGGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA HS_haplotype2 CCCGGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA *** ******************************************************** HS_haplotype1 TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGGTGAATGACAGCC HS_assemblymutate_np1212 TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGGTGAATGACTGCC HS_haplotype2 TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGGTGAATGACTGCC ******************************************************** *** HS_haplotype1 TCCCTGGATTACAACGTGGGTCAATGAAAATTATTTGGTCTTCATACCTCATCTGTGTAA HS_assemblymutate_np1212 TCCCTGGATTACAACGTGGGTCAATGAAAATTTTTTGGTCTTCATACCTCATCTGTGTAA HS_haplotype2 TCCCTGGATTACAACGTGGGTCAATGAAAATTTTTTGGTCTTCATACCTCATCTGTGTAA ******************************** *************************** HS_haplotype1 GCTTCAAACCACTGCTTGTATAGGAGTTCACTTAGCGGGCGGAATCCCTCCCTGTCCCTT HS_assemblymutate_np1212 GCTTCAAACCTCTGCTTGTATAGGAGTTCACTTAGCGGCCGGAATCCCTCCCTGTCCCTT HS_haplotype2 GCTTCAAACCTCTGCTTGTATAGGAGTTCACTTAGCGGCCGGAATCCCTCCCTGTCCCTT ********** *************************** ********************* HS_haplotype1 AAGGGAGAATTGAAGGCCCTCAGGTACTGGGTCTCATCGTGCAGTAGCTGAGGGGCCAGA HS_assemblymutate_np1212 CAGGGAGAATTGCAGGCCCTCAGGTACTGGGTCTCATCGTGCAGTAGCTGAGGGGCCAGA HS_haplotype2 CAGGGAGAATTGCAGGCCCTCAGGTACTGGGTCTCATCATGCAGTAGCTGAGGGGCCAGA *********** ************************* ********************* HS_haplotype1 TCCAACGTCCGTCCCCTCAGGTTTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC HS_assemblymutate_np1212 TCCAACGTCCGTCCCCTCAGGTTTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC HS_haplotype2 TCCAACGTCCGTCCCCTCAGGTGTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC ********************** ************************************* HS_haplotype1 TTTCCGCTGAGCCATCTCAAATTCGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA HS_assemblymutate_np1212 TTTCCGCTGAGCCATCTCAAATTCGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA HS_haplotype2 TTTCCGCTGAGCCATCTCAAATACGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA ********************** ************************************* HS_haplotype1 GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTGCTGGG HS_assemblymutate_np1212 GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTCCTGGG HS_haplotype2 GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTCCTGGG ****************************************************** ***** HS_haplotype1 CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGCTCCAA HS_assemblymutate_np1212 CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGCTCCAA HS_haplotype2 CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGCTCCAA ************************************************************ HS_haplotype1 TTCAAGAAGACCCAGGCAGTGAGCCCAGCCCCCCAGCTCCGTCGTGGAGAAGGATGATTA HS_assemblymutate_np1212 TTCAAGAAGACCCAGGCAGTGAGCCCAGCCCCCCAGCTCCGTCGTGGAGAAGGATGATTA HS_haplotype2 TTCAAGAAGGCCCAGGCAGTGAGCCCAGCCCCCCAGCTCCCTCGTGGAGAAGGATGCTTA ********* ****************************** *************** *** HS_haplotype1 TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTGTTATACTTTGGCTTAAACCCG HS_assemblymutate_np1212 TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTGTTATACTTTGGCTTAAACCCG HS_haplotype2 TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTTTTATACTTTGGCTTAAACCCG ************************************** ********************* HS_haplotype1 GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGATCTCTGTAG HS_assemblymutate_np1212 GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGATCTCTGTAG HS_haplotype2 GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGATCTCTGTAG ************************************************************ HS_haplotype1 AGGCAGCCACCCGATTACAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACAATAGG HS_assemblymutate_np1212 AGGCAGCCACCCGATTACAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACTATAGG HS_haplotype2 AGGCAGCCACCCGATTGCAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACTATAGG **************** ************************************* ***** HS_haplotype1 GTTCAGACACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCC HS_assemblymutate_np1212 GTTCAGACACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCC HS_haplotype2 GTTCAGAAACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCC ******* **************************************************** HS_haplotype1 AGTCAATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG HS_assemblymutate_np1212 AGTCAATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG HS_haplotype2 AGTCAATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG ************************************************************ HS_haplotype1 TTTGAGATTTTAAACAATTTACATGCTCCTGGAAAATTTTTTCTGACAGAGAGATCAGCT HS_assemblymutate_np1212 TTTGAGATTTTAAACAATTTACATGCTCCTGGAAAATTTTTTCTGACAGAGAGATCAGCT HS_haplotype2 TTTGAGATTTTAAACAATTTACATGCTCCTGGAAAATTTTTTCTGACAGAGAGATCAGCT ************************************************************ HS_haplotype1 AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTCACCTCA HS_assemblymutate_np1212 AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTCACCTCA HS_haplotype2 AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTAACCTCA ***************************************************** ****** HS_haplotype1 CAACAGGCTGCTCGTCGAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG HS_assemblymutate_np1212 CAACAGGCTGCTCGTCGAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG HS_haplotype2 CAACAGGCTGCTCGTCCAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG **************** ******************************************* HS_haplotype1 GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATTATTTGTGATGGCTTGGTG HS_assemblymutate_np1212 GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATGATTTGTGATGGCTTGGTG HS_haplotype2 GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATGATTTGTGATGGCTTGGTG ***************************************** ****************** HS_haplotype1 CACATTTATGTAATTGCTGTAATACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC HS_assemblymutate_np1212 CACATATATGTAATTGCTGTACTACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC HS_haplotype2 CACATATATGTAATTGCTGTACTACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC ***** *************** ************************************** HS_haplotype1 CTGAGCGCGAGGTAATTCGCTAGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT HS_assemblymutate_np1212 CTGAGCGCGAGGTAATTCGCTCGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT HS_haplotype2 CTGAGCGCGAGGTAATTCGCTCGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT ********************* ************************************** HS_haplotype1 CACCCGCTGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG HS_assemblymutate_np1212 CACCCGCTGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG HS_haplotype2 CACCCGCGGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG ******* **************************************************** HS_haplotype1 GTTCTTCAGAGTTTACCAGCCCAGCTGTTTTAACTCTGCCATAACACTTCAAAAGCACGT HS_assemblymutate_np1212 GTTCTTCAGAGTTTACCAGCCCAGCTGTTTTAACTCTGCCATAACACTTCAAAAGCACGT HS_haplotype2 GTTCTTCAGAGTTTACCAGCCGAGCTGTTTTAACTCTGCAATAACACTTCAAAAGCACGT ********************* ***************** ******************** HS_haplotype1 TATGTAATATATACACTTCATCACCTGGCTTGAATATTGAGGAGTTGGGGTGTCCGCCAA HS_assemblymutate_np1212 TATGTAATATATACACTTCATCACCTGGCTTGAATATTGAGGAGTTGGGGTGTCCGCCAA HS_haplotype2 TATGTAATATATACACTTCCCCACCTCGCTTGAATATTGAGGAGTTGGGGTGTCCGCCAA ******************* ***** ********************************* HS_haplotype1 CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC HS_assemblymutate_np1212 CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC HS_haplotype2 CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC ************************************************************ HS_haplotype1 ATAAAATACTCTATGTCTGGTAACCTCTGAAATTGCTTTGGGGGATTATGAAGAAACTGA HS_assemblymutate_np1212 ATAAAAAACTCTATGTCTGGTAACCTCTGAAATTGCTTTGGGGGATTATGAAGAAACTGA HS_haplotype2 ATAAAAAACTCTATGTCTGGTAACCTCTGAAATTGCTTTGGGGGATTATGAAGAAACTGA ****** ***************************************************** HS_haplotype1 ACAACATTTTTGTTCAAACATATGTTTGAACACCTATGCCCCTAGATCAAGTAGCTTTCC HS_assemblymutate_np1212 ACAACATTTTTGTTCAAACATATGTTTGAACACCTATGCCCCTAGATCTAGTAGCTTTCC HS_haplotype2 ACAACATTTTTGTTCAAACATATGTTTGAACACCTATGCCCCTAGATCTAGTAGCTTTCC ************************************************ *********** HS_haplotype1 TTATTTATATCTGGGTTTTGATCTCTATTCAAGGACTGGGCTTACTAGATAACCTGGAGT HS_assemblymutate_np1212 TTATTTATATCTGGGTTTTGATCTCTATTCAAGGACTGGGCTTACTGGATAACCTGGAGT HS_haplotype2 TTATTTATATCTGGGTTCTGATCTCTATTCAATGACTGGGCTTACTGGATAACCTGGAGT ***************** ************** ************* ************* HS_haplotype1 TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTAGTGGTTTTTCCGCCATG HS_assemblymutate_np1212 TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTACTGGTTTTTCCACCATG HS_haplotype2 TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTACTGGTTTTTCCACCATG ******************************************* ********** ***** HS_haplotype1 GCAACCCCAATTTCTACTTGGCTCATCCTCCCGCCGCGTGGCCCCTCCACTGCAACTACA HS_assemblymutate_np1212 GCAACCCCAATTTCTACTTGGCTCATCCTCCCGCCGCGTGGCCCCTCCACTGCAACTACA HS_haplotype2 GCAACCCCAATTTCTACTTGGCTCATCCTCCCGCCGCGTGGCCCCTCCACTGCAACTACA ************************************************************ HS_haplotype1 TCCCCGACCAGATCGATTGTGCTACTAATTCTCTATCCGATGTATTACATTGTGGAGAGA HS_assemblymutate_np1212 TCCCCGACCAGATCGATAGTGCTACTAATTCTCTATCCAATGTAATACATTGTGGAGAGA HS_haplotype2 TCCCCGACCAGATCGATAGTGCTACTAATTCTCTATCCAATGTAATACATTGTGGAGAGA ***************** ******************** ***** *************** HS_haplotype1 GTATGTACATACCTAAGAGTGGTTCTCCACCGTGTTGTTTGTGACAATCGTAAAATTGCA HS_assemblymutate_np1212 GTATGTACATACCTAAGAGTGGTTCTCCACCGTGTTGTTTGTGACAATCGTTAAATTTCC HS_haplotype2 GTATGTACATACCTAAGAGTGGTTCTCCACCGTGTTGTTTGTGACAATCGTTAAATTTCC *************************************************** ***** * HS_haplotype1 GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC HS_assemblymutate_np1212 GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC HS_haplotype2 GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC ************************************************************ HS_haplotype1 CAGCTGTTTTTTAGAGACTTTAATGAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC HS_assemblymutate_np1212 CAGCTGTTTTTTAGAGACTTTAATTAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC HS_haplotype2 CAGCTGTTTTTTAGAGACTTTAATTAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC ************************ *********************************** HS_haplotype1 TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT HS_assemblymutate_np1212 TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT HS_haplotype2 TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT ************************************************************ HS_haplotype1 GCTCTGCTTTGCAGTATGGTCAGGTGACAGAAACATGGGAGGTAGAGTAGTATATTTAAT HS_assemblymutate_np1212 GCTCTGCTTTGCAGTATGGTCAGGTGACAAAAACATGGGAGGTAGAGTAGTATATTTAAT HS_haplotype2 GCTCTGCTTTGCAGTATGGTCAGGTGACAAAAACATGGGAGGTAGAGTAGTATATTTAAT ***************************** ****************************** HS_haplotype1 TGAACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG HS_assemblymutate_np1212 TGTACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG HS_haplotype2 TGTACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG ** ********************************************************* HS_haplotype1 AATGTTTCCTTCTGTACGGAAAGATGTCCTTTGGAATATCTCAGTTTAGTCTAATCCCCT HS_assemblymutate_np1212 AATGTTTCCTTCTGTACGGAAAGATGTCATTTGGAATATTTCAGTTTAGTCTAATCCCCT HS_haplotype2 AATGTTTCCTTCTGTACGGAAAGATGTCATTTGGAATATTTCAGTTTAGTCTAATCCCCT **************************** ********** ******************** HS_haplotype1 TTTTCTTCCGACTACATGTGTATTTTTGTAGATGCTTGGCCTACAGCCTCTTTCTCGGCA HS_assemblymutate_np1212 TTTTCTTCCGACTACATGTGTATTTTTGCAGATGCTTGGCATACAGTCTCTTTCTCGGCA HS_haplotype2 TTTTCTTCCGACTACATGTGTATTTTTGCAGATGCTTGGCATACAGTCTCTTTCTCGGCA **************************** *********** ***** ************* HS_haplotype1 CTCCGCTTTGGGAGTGGGGCAGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT HS_assemblymutate_np1212 CTCCGCTTTGGGAGTGGGGCAGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT HS_haplotype2 CTCCGCTTTGGGAGTGGGGCTGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT ******************** *************************************** HS_haplotype1 CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG HS_assemblymutate_np1212 CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG HS_haplotype2 CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG ************************************************************ HS_haplotype1 GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG HS_assemblymutate_np1212 GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG HS_haplotype2 GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG ************************************************************ HS_haplotype1 CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC HS_assemblymutate_np1212 CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC HS_haplotype2 CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC ************************************************************ HS_haplotype1 ATTAATCATGTGCGTGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG HS_assemblymutate_np1212 ATTAATCATGTGCGTGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG HS_haplotype2 ATTAATGATGTGCATGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG ****** ****** ********************************************** HS_haplotype1 TGCATCATTTGTGTCCTGCTGATGGGCTGTGTATATGGGGGCAAGACATTCTCTACTTTT HS_assemblymutate_np1212 TGCATCATTTGTGTCCTGCTGATGGGCTGTGTATATGGGGGCAAGACATTCTCTACTTTT HS_haplotype2 TGCATCATTTGTGTCCTGCTGATGGGCTGGGTATATGGGGGCAAGACATTCTCTACTTTT ***************************** ****************************** HS_haplotype1 CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC HS_assemblymutate_np1212 CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC HS_haplotype2 CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC ************************************************************ HS_haplotype1 AGACTTCTTAAGAGAATTTGCACTTTAAAGGCTGTAAAAACCATCTTTGTAGAGTGTATA HS_assemblymutate_np1212 AGACTTCTTAAGAGAATTTGCACTTTAAAGGCTGTAAAAACCATCTTTGTAGAGTGTATA HS_haplotype2 AGACTTCTTAAGAGAATTTGCACTTTACAGGCTGTAAAAACCATCTTTGTAGAGTGTATA *************************** ******************************** HS_haplotype1 GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA HS_assemblymutate_np1212 GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA HS_haplotype2 GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA ************************************************************ HS_haplotype1 TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGATTTAAATAATCCAGAAGAGAGGCTGCA HS_assemblymutate_np1212 TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGATTTAAATAATCCAGAAGAGAGGCTGCA HS_haplotype2 TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGGTTTAAATAATCCAGAAGAGAGGCTGCA ******************************** *************************** HS_haplotype1 CTCGTGACCTCCCAGTTATTGCATTGTAGTGCTGGCCAGTGGAGGGACGAGTATATAATT HS_assemblymutate_np1212 CTCGTGACCTCCCAGTTATTGCATTGTAGTGCTGGCCAGTGGAGGGACGAGTATATAATT HS_haplotype2 CTCCTGACCTCCCACTTATTGCATTGTAGGGCTGGCCAGTGGAGGGAAGAGTATATAATT *** ********** ************** ***************** ************ HS_haplotype1 TCTCCCAGCCCGTCGGTGGTGTGGTGGTTTTTAATCTTTGCATGGCTCAACTCAATTGCT HS_assemblymutate_np1212 TCTCCCAGCCCGTCGGTGGTGTGGTGGTTTTTAATCTTTGCATGGCTCAACTCAATTGCT HS_haplotype2 TCTCCCAGCCCCTCGGTGGGGTGGTGGTTTTTAATCTTTGCATGGCTCAACTCAATTGCT *********** ******* **************************************** HS_haplotype1 CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA HS_assemblymutate_np1212 CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA HS_haplotype2 CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA ************************************************************ HS_haplotype1 AAGTGTCAACTCTCCAATCTCATCTATTCATCAGGTAAATAACGCCCACTGAGCTATAGG HS_assemblymutate_np1212 AAGTGTCAACTCTCCAATCTCATCTATTCATCAGGTAAATAACGCCCACTGAGCTATAGG HS_haplotype2 AAGTGTCAACTCTCCAATCTCATCTATTCATCACGTAAATAACGCCCACTGAGCTATAGG ********************************* ************************** HS_haplotype1 GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT HS_assemblymutate_np1212 GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT HS_haplotype2 GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT ************************************************************ HS_haplotype1 TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGGAACTACAGTGGCA HS_assemblymutate_np1212 TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGGAACTACAGTGGCA HS_haplotype2 TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGGAACTACAGTGGCA ************************************************************ HS_haplotype1 TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAATACCACTGTGCAGTT HS_assemblymutate_np1212 TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAATACCACTGTGCAGTT HS_haplotype2 TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAATACCACTGTGCAGTT ************************************************************ HS_haplotype1 CCACCATCTAACTAACTCCCCACCTGTAATCCCTCCAAGTTTGTCACCTCTCCTGTACTT HS_assemblymutate_np1212 CCACCATCTAACTAACTCCCCACCTGTAATCCCTCCAAGTTTGTCACCTCTCCTGTACTT HS_haplotype2 CCACCATCTAACTAACTCCCCACCTGTAATCCCTCCAAGTTTGTCACCTCTCCTGTACTT ************************************************************ HS_haplotype1 CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGTATACAAATCCCTCAGCATTT HS_assemblymutate_np1212 CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGTATACAAATCCCTCAGCATTT HS_haplotype2 CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGCATACAAATCCCTCAGCATTT *************************************** ******************** HS_haplotype1 CAGAAGTAAGTAAACCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGTATTGTT HS_assemblymutate_np1212 CAGAAGTAAGTAAACCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGTATTGTT HS_haplotype2 CAGAAGTAAGTAAACCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGTATTGTT ************************************************************ HS_haplotype1 TGTGAGAAGTTGAGAAATTATCATAACCTAATTTATGAGCAACATGTCATATGTTAACAT HS_assemblymutate_np1212 TGTGAGAATTTGAGAAATTATCATAACCTAATTTATGAGCAACATGTCATATGTTAACAT HS_haplotype2 TGTGAGAATTTGAGAAATTATCATAACCTAATTTATGGGCAACATGTCATATGTTAACAT ******** **************************** ********************** HS_haplotype1 TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAGTCACTTCTCCTCTGAGCCCTATCAGC HS_assemblymutate_np1212 TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAGTCACTTCTCCTCTGAGCCCTATCAGC HS_haplotype2 TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAATCACTTCTCCTCTGAGCCCTATCAGC ********************************* ************************** HS_haplotype1 CAAAAAGAATTAGAAGATCTCGGGAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA HS_assemblymutate_np1212 CAAAAAGAATTAGAAGATCTCGGGAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA HS_haplotype2 CAAAAAGAATTAGAAGATATCGGCAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA ****************** **** ************************************ HS_haplotype1 ATATTTTTAAGACTCAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGGTACCA HS_assemblymutate_np1212 ATATTTTTAAGACTCAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGGTACCA HS_haplotype2 ATATTTTTAAGACTAAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGGTACCA ************** ********************************************* HS_haplotype1 CGCCTGGATGAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG HS_assemblymutate_np1212 CGCCTGGATGAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG HS_haplotype2 CGCCTGGATGAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG ************************************************************ HS_haplotype1 ATCATCTGAATAAGATCTATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA HS_assemblymutate_np1212 ATCATCTGAATAAGATCTATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA HS_haplotype2 ATCATCTGAATAAGATATATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA **************** ******************************************* HS_haplotype1 GAACCCAGGTGATGAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA HS_assemblymutate_np1212 GAACCCAGGTGATCAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA HS_haplotype2 GAACCCAGGTGATCAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA ************* ********************************************** HS_haplotype1 GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCACCCCAGCCTCCCCATCTCA HS_assemblymutate_np1212 GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCAACCCAGCCTCCCCATCTCA HS_haplotype2 GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCAACCCAGCCTCCCCATCTCA ***************************************** ****************** HS_haplotype1 TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA HS_assemblymutate_np1212 TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA HS_haplotype2 TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA ************************************************************ HS_haplotype1 TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC HS_assemblymutate_np1212 TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC HS_haplotype2 TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC ************************************************************ HS_haplotype1 CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGGTGCTTC HS_assemblymutate_np1212 CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGTTGCTTC HS_haplotype2 CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGTTGCTTC ***************************************************** ****** HS_haplotype1 CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACGAG HS_assemblymutate_np1212 CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACGAG HS_haplotype2 CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACAAG ********************************************************* ** HS_haplotype1 CAAACTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCATCCCAAAGTCAAGG HS_assemblymutate_np1212 CAAACTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCATCCCAAAGTCAAGG HS_haplotype2 CAACCTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCCTCCCAAAGTCAAGG *** ***************************************** ************** HS_haplotype1 ATCGTTGCTGTGTACTTTTAGAAATAATAAAAAAGAATTAATAGCGATTTTTCTCTCTGA HS_assemblymutate_np1212 ATCGTTGCTGTGTACTTTTAGAACTAATAAAAACGAATTGATAGCGATTTTTCTCTCTGA HS_haplotype2 ATCGTTGCTGTGTACTTTTAGAACTAATAAAAACGAATTGATAGCGATTTTTCTCTCTTA *********************** ********* ***** ****************** * HS_haplotype1 GCACCTGTATTATACAGAAAGTTAATTCCCCACCTGGTTGTGTCAACAAAGCAAACAACT HS_assemblymutate_np1212 GCACCTGTATTATACAGAAAGTTAATTCCCCACCTCGTTGTGTCAACAAAGCAAACAACT HS_haplotype2 GCACCTGTATTATACAGAAAGTTAATTCCCCACCTCGTTGTGTCAACAAAGCAAACAACT *********************************** ************************ HS_haplotype1 GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAAGTTGAG HS_assemblymutate_np1212 GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAACTTGAG HS_haplotype2 GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAACTTGAG ****************************************************** ***** HS_haplotype1 CCAGATGCGGGTTTCTTTTCCCTCCAATACGGTGGATGAGTGCCTCCTTGAAAGAGCCAA HS_assemblymutate_np1212 CCAGATTCGGGTTTCTTTTCCTTCCAAAATGGTGGATGAGTGCCTCCTTGGAAGAGCCAA HS_haplotype2 CCAGATTCGGGTTTCTTTTCCTTCCAAAATGGTGGATGAGTGCCTCCTTGGAAGAGCCAA ****** ************** ***** * ******************** ********* HS_haplotype1 CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGTAGGGACCGTATCTCAAATGCT HS_assemblymutate_np1212 CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGTAGGGACCGTATCTCAAATGCT HS_haplotype2 CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGGAGGGACCGTATCTCAACTGCT ************************************** **************** **** HS_haplotype1 AATTAACTATCATTTTCAGTTACTTAGCCTATAATTTAAGTAGAAAAAGGTACAGCTCCT HS_assemblymutate_np1212 AATTAACTATCATTTTCAGTTACTTAGCCTATAATTTAAGTAGAAAAAGGTACAGCTCAT HS_haplotype2 AATTAACTATCATTTTCAGTTACTTAGCCTGTAATTTAAGTAGAAAAAGGTACAGCTCAT ****************************** *************************** * HS_haplotype1 GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCATGCGGAGTAGAAAGGATCCTGCGGT HS_assemblymutate_np1212 GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCAGGCGGAGAAGAAAGGATCCTGCGGT HS_haplotype2 GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCAGGCGGAGAAGAAAGGATCCTGCGGT *********************************** ****** ***************** HS_haplotype1 CTACTGGAGTCCATACTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT HS_assemblymutate_np1212 CTACTGGAGTCCATACTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT HS_haplotype2 CTACTGGAGTCCATAGTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT *************** ******************************************** HS_haplotype1 CCTGAAAAACCCCAAGTAGAGACCACTGGGATAGTGAGCTCCTGCGCCCATTTTAGTGGT HS_assemblymutate_np1212 CCTGAAAAACCCCAAGTAGAGACCACTGGGATAGTGAGCTCCTGCGCCCATTTAAGTGGT HS_haplotype2 CCTGAAAAACCCCAAGTAGAGACCACTGGGTTAGTGAGCTCCTGCGCCCATTTAAGTGGT ****************************** ********************** ****** HS_haplotype1 CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA HS_assemblymutate_np1212 CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA HS_haplotype2 CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA ************************************************************ HS_haplotype1 AGCCCTACAGTGTAGGGCAGATGCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA HS_assemblymutate_np1212 AGCCCTACAGTGTAGGGCAGATGCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA HS_haplotype2 AGCCCTACAGTGTAGGGCAGATTCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA ********************** ************************************* HS_haplotype1 AGCCATATAGACCAAAAGAGCGAGATGAAGGTGGCAGGTGCTTCTGTCAGCACCACGAAA HS_assemblymutate_np1212 AGCCATATAGACCAAAAGAGCGAGATGAAGGTGGCAGGTGCTTCTGTCAGCACCACGAAA HS_haplotype2 AGCCATATAGACCAGAAGAGCGAGATGAAGGTGGCAGGTGCTTCTGGCAGCACCACGAAA ************** ******************************* ************* HS_haplotype1 TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA HS_assemblymutate_np1212 TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA HS_haplotype2 TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA ************************************************************ HS_haplotype1 ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA HS_assemblymutate_np1212 ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA HS_haplotype2 ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA ************************************************************ HS_haplotype1 AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTTCAGAAAAAAACAAC HS_assemblymutate_np1212 AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTTCAGAAAAAAACAAC HS_haplotype2 AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTGCAGAAAAAAACAAC ********************************************* ************** HS_haplotype1 TACCCTACTTTGAGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTGG HS_assemblymutate_np1212 TACCCTACTTTGAGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTTG HS_haplotype2 TACCCTACTTTGTGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTTG ************ ********************************************* * HS_haplotype1 GTTTCAGGCTAAAATAGAATGGTGTTAGCAAGGCGCGTGAAATTCCTTTTGAGTCAAAAA HS_assemblymutate_np1212 GTTTCAGGCTAAAATAGAATGGTGTTATCAAGGCGCTAGAAATTCCTTTTGAGTCAAAAA HS_haplotype2 GTTTCAGGCTAAAATAGAATGGTGTTATCAAGGCGCTAGAAATTCCTTTTGAGTCAAAAA *************************** ******** ********************** HS_haplotype1 ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG HS_assemblymutate_np1212 ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG HS_haplotype2 ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG ************************************************************ HS_haplotype1 TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCCAAAAATAC HS_assemblymutate_np1212 TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCGAAAAATAC HS_haplotype2 TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCGAAAAATAC *************************************************** ******** HS_haplotype1 TTATTTCGAAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG HS_assemblymutate_np1212 TTATTTCGGAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG HS_haplotype2 TTATTTCGGAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG ******** *************************************************** HS_haplotype1 TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC HS_assemblymutate_np1212 TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC HS_haplotype2 TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC ************************************************************ HS_haplotype1 CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG HS_assemblymutate_np1212 CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG HS_haplotype2 CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG ************************************************************ HS_haplotype1 GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT HS_assemblymutate_np1212 GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT HS_haplotype2 GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT ************************************************************ HS_haplotype1 AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA HS_assemblymutate_np1212 AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA HS_haplotype2 AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA ************************************************************ HS_haplotype1 AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA HS_assemblymutate_np1212 AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA HS_haplotype2 AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA ************************************************************ HS_haplotype1 TGTGAGTTCTGGCAGGCAACACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA HS_assemblymutate_np1212 TGTGAGTTCTGGCAGGCAACACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA HS_haplotype2 TGTGAGTTCTGGCAGGCACCACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA ****************** ***************************************** HS_haplotype1 CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT HS_assemblymutate_np1212 CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT HS_haplotype2 CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT ************************************************************ HS_haplotype1 GCAGTAGACGTTCCTTGCTATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG HS_assemblymutate_np1212 GCGGTAGACGTTCCTTGCTATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG HS_haplotype2 GCGGTAGACGTTCCTTGATATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG ** ************** ****************************************** HS_haplotype1 ATATAATCATTGATCCTGACCCCTAATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC HS_assemblymutate_np1212 ATATAATCATTGATCCTGACCTCTCATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC HS_haplotype2 ATATAATCATTGATCCTGACCTCTCATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC ********************* ** *********************************** HS_haplotype1 ACTGGGTTTAGTATCTATACACAGTCTTCTCTTCCTTACCAGTGTGGGAAGGAAAGAGGG HS_assemblymutate_np1212 ACTAGGTTTAGTATCTATAAACAGTCTTCTCTTCCTTACCAGTATGGGAAGGAAAGAGGG HS_haplotype2 ACTAGGTTTAGTATCTATAAACAGTCTTCTCTTCCTTACCAGTATGGGAAGGAAAGAGGG *** *************** *********************** **************** HS_haplotype1 AAAAAGAACACAAGATACGCACCGCAGCTATGCAATTATATAATGTATGTATATGAAAAT HS_assemblymutate_np1212 ACAAAGAACACAAGATACGCACCGCAGCTATGCAATTATATAATGTATGTATATGAAAAT HS_haplotype2 ACAAAGAACACAAGATACGCACCGCAGCTATGCAATTATATAATGTATGTATATGAAAAT * ********************************************************** HS_haplotype1 ATTTTCTTCACATGCGTGAGAGTCCCAGGCTGCTTTATGTAATCTGGCGGTGTACTAGCC HS_assemblymutate_np1212 ACTTTCTTCACATGCGTGAGAGTCCCAGGCTGCTTTATGTAATCTGGCGGTGTACTAGCC HS_haplotype2 ACTTTCTTCACATGCGTGAGAGTCCCAGGCTGCTTTATGTAATCTGGCGGTGTACTAGCC * ********************************************************** HS_haplotype1 AGGCATGCCTGTCCCATTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG HS_assemblymutate_np1212 AGGCATGCCTGTCCCAGTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG HS_haplotype2 AGGCATGCCTGTCCCAGTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG **************** ******************************************* HS_haplotype1 GGGGGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT HS_assemblymutate_np1212 CGGAGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT HS_haplotype2 CGGAGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT ** ******************************************************** HS_haplotype1 TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG HS_assemblymutate_np1212 TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG HS_haplotype2 TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG ************************************************************ HS_haplotype1 CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG HS_assemblymutate_np1212 CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG HS_haplotype2 CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG ************************************************************ HS_haplotype1 TAAGTTGATCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGCTCACAGAGGTGTGTT HS_assemblymutate_np1212 TAAGTTGACCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGATCACAGAGGTGTGTT HS_haplotype2 TAAGTTGACCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGATCACAGAGGTGTGTT ******** *********************************** *************** HS_haplotype1 TTTTTCTAGCTAAAATGCAGTATCCAAGATATTTTTGAATGGAGGTGTTACAATTGTAAC HS_assemblymutate_np1212 TTTTTCTAGCTAAAATGCAGTATCCAAGATATTTTTGAATGGAGGTGTTACAATTGTAAC HS_haplotype2 TTTTTCTAGCTAAAATGCAGTATCCAAGATATTTTTGAATGGAGGTGTTACAATTGTAAC ************************************************************ HS_haplotype1 TCATTGTTTCAGTGGAGAGGCGCCACTACTGGCTCCGTCCCTCCCGTCCTCACGACTTAA HS_assemblymutate_np1212 TCATTGTTTCAGTGGAGAGGCGCCACTAATGGCTCCGTCCCTCCCGTCCTCACGACTTAA HS_haplotype2 TCATTGTTTCAGTGGAGAGGCGCCACTAATGGCTCCGTCCCTCCCGTCCTCACGACTTAA **************************** ******************************* HS_haplotype1 ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA HS_assemblymutate_np1212 ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA HS_haplotype2 ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA ************************************************************ HS_haplotype1 TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT HS_assemblymutate_np1212 TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT HS_haplotype2 TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT ************************************************************ HS_haplotype1 GCGATTCCACAGGGTTCCAATGTTTCTCAGACGCCAACTTGTCACTCTCAAAAGAGGTTC HS_assemblymutate_np1212 GCGATTCCACAGGGTTCCAATGTTTCTCAGACGCCAACTTGTCACTCTCAAAAGAGGTTC HS_haplotype2 GCGATTCCACAGGATTCCAATGTTTCTCAGATGCCATCTTGTCACTCTCAAAAGAGGTTC ************* ***************** **** *********************** HS_haplotype1 CTGCTGGATGAGACCCATATATAAGTACAATATAAACAGTACCTGGCCTGAGGATCCAAG HS_assemblymutate_np1212 CTGCTGGATGAGACCCATATATAAGTACAATATAACCAGTACCTGGCCTGAGGATCCAAG HS_haplotype2 CTGCTGGATGAGACCCATATATAAGTACAATATAACCAGTACCTGGCCTGAGGATCCAAG *********************************** ************************ HS_haplotype1 CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCGAT HS_assemblymutate_np1212 CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCAAT HS_haplotype2 CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCAAT ********************************************************* ** HS_haplotype1 TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA HS_assemblymutate_np1212 TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA HS_haplotype2 TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA ************************************************************ HS_haplotype1 CCCCTGCTACTTGAATCAGACGGTGCGCCTGTCTCAGGGGCTATTAGTCATGGCCGGGCC HS_assemblymutate_np1212 CCCCTGCTACTTCAATCAGACGGTGCGCCTGTCTCAGGGGCTATAAGTCATGGCCGGGCC HS_haplotype2 CCCCTGCTACTTCAATCAGACGGTGCGCCTGTCTCAGGGGCTATAAGTCATGGCCGGGCC ************ ******************************* *************** HS_haplotype1 AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCA HS_assemblymutate_np1212 AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCC HS_haplotype2 AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCC *********************************************************** HS_haplotype1 GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCAAATCCTCCACCCGTTGGAG HS_assemblymutate_np1212 GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCCAATCCTCCCCCAGTTGGAG HS_haplotype2 GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCCAATCCTCCCCCAGTTGGAG **************************************** ******** ** ******* HS_haplotype1 CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT HS_assemblymutate_np1212 CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT HS_haplotype2 CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT ************************************************************ HS_haplotype1 ACACATAACACCAGCTTCTGTTGTCACAAAAACGATGCCTAAATAAGTGCTTAGACTGGT HS_assemblymutate_np1212 ACACATAACACCAGCTTCTGTTGTCACCAAAACGATGCCGAAATAAGTGCTTAGACTGGT HS_haplotype2 ACACATAACACCAGCTTCTGTTGTCACCAAAACGATGCCGAAATAAGTGCTTAGACTGGT *************************** *********** ******************** HS_haplotype1 GGACGAGAGGTATTTCAACCGAGAGTCTCACTAAAAAAACTATATAGAGACCCCGCCAGT HS_assemblymutate_np1212 GGACTAGAGGTATTTCAACCTAGAGTCTCACTAAAAAAACTATATAGAGACCCCGTCAGT HS_haplotype2 GGACTAGAGGTATTTCAACCTAGAGTCTCACTAAAAAAACTATATAGAGACCCCGTCAGT **** *************** ********************************** **** HS_haplotype1 CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCAGATAAGCA HS_assemblymutate_np1212 CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCACATAAGCA HS_haplotype2 CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCACATAAGCA **************************************************** ******* HS_haplotype1 CTCTCACAGGAGAGCCGGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG HS_assemblymutate_np1212 CTCACACAGGAGAGCCGGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG HS_haplotype2 CTCACACAGGAGAGCCAGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG *** ************ ******************************************* HS_haplotype1 TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAAGATATTAAGTTTGGAAGGCTCAGACTCC HS_assemblymutate_np1212 TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAAGATATTAAGTTTGGAAGGCTCAGACTCC HS_haplotype2 TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAACATATTAAGTTTGGAAGGCTCAGACTCC ******************************** *************************** HS_haplotype1 TGGGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA HS_assemblymutate_np1212 TGGGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA HS_haplotype2 TGTGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA ** ********************************************************* HS_haplotype1 TGTGGCTTTTTAAAGCCAGAAGACCCAGGCTCACAGAGATGAGGCTGAGCCTGACAGGCG HS_assemblymutate_np1212 TGTGGCTTTTTAAAGCCAGAAGACCCAGGCTCACAGAGATGAGGCTGAGCCTGCCAGGCG HS_haplotype2 TGTGGCTTTTTAAGGCCAGAAGACCCAGGCTCACAGAGATGAGGCTGAGCCTGCCAGGCG ************* *************************************** ****** HS_haplotype1 AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGAGTGTTACCCTTCCCTTGATTATAGT HS_assemblymutate_np1212 AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGATTGTTACCCTTCCCTTGATTATAGT HS_haplotype2 AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGATTGTTACCCTTCCCTTGATTATAGT *********************************** ************************ HS_haplotype1 AAATTAAAAAAGTGCTCCTCCCGGCTCTAAATAGGTACTTCTGGATGGGAGGCTCACCTG HS_assemblymutate_np1212 AAATTAAAAAAGTGCTCCTCCCGGCTCTAAATAGGTACTTCTGGATGGGAGGCTCACCTG HS_haplotype2 AAATTAAAAAAGTGCTCCTCCCGGCTCTAGATAGGTACTTCTGGATGGGAGGCTCACCTG ***************************** ****************************** HS_haplotype1 CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA HS_assemblymutate_np1212 CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA HS_haplotype2 CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA ************************************************************ HS_haplotype1 TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTAGAATTGAACTAAATGGTACGCAT HS_assemblymutate_np1212 TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTAGAATTGAACTAAATGGTACGCAT HS_haplotype2 TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTGGAATTGAACTAAATGGTACACAT ************************************ ******************* *** HS_haplotype1 TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC HS_assemblymutate_np1212 TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC HS_haplotype2 TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC ************************************************************ HS_haplotype1 TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC HS_assemblymutate_np1212 TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC HS_haplotype2 TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC ************************************************************ HS_haplotype1 CAGGAGGGGCTCCAGCTCACTTTTTTAGTGGGACTCCACAAGCGAGAATAAATGCTGGAA HS_assemblymutate_np1212 CAGGAGGGGCTCCAGCTCACTTTTTTAGTGGGACTCCACAAGAGAGAATAAATGCTGGAA HS_haplotype2 CAGGAGGGGTTCCAGCACACTTTTTTAGTGGCACTCCACAAGAGAGAATAAATGCTGGAA ********* ****** ************** ********** ***************** HS_haplotype1 AGGGCGTGGCTGAATCTAAGAGCCTTACAAAACAACCTGACAGGGGCTTCCCTTCCTGGC HS_assemblymutate_np1212 AGGGCGTGACTGAATCTAAGAGCCTTACATAACAACCTGACAGGGGCTTCCCTTCCTGGC HS_haplotype2 AGGGCGTGACTGAATCTAAGAGCCTTACATAACAACCTGACAGGGGCTTCCCTTCCTGGC ******** ******************** ****************************** HS_haplotype1 ACAACTATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA HS_assemblymutate_np1212 ACAACTATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA HS_haplotype2 ACAAATATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA **** ******************************************************* HS_haplotype1 CAAAATAGTAGCCTGGATCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG HS_assemblymutate_np1212 CAAAATAGTAGCCTGGCTCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG HS_haplotype2 CAAAATAGTAGCCTGGCTCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG **************** ******************************************* HS_haplotype1 CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAAGAATATGCATTAGAGCGACTC HS_assemblymutate_np1212 CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAGGAATATGCATTAGAGCGACTC HS_haplotype2 CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAGGAATATGCATTAGAGCGACTC ************************************** ********************* HS_haplotype1 TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG HS_assemblymutate_np1212 TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG HS_haplotype2 TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG ************************************************************ HS_haplotype1 GGTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCCACCCCACT HS_assemblymutate_np1212 GTTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCTACCCCACT HS_haplotype2 GTTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCTACCCCACT * ************************************************* ******** HS_haplotype1 TGTAAGAGCGGCCTCCCACCTTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA HS_assemblymutate_np1212 TGTAAGAGCGGCCTCCCACCGTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA HS_haplotype2 TGTAAGAGCGGCCTCCCACCGTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA ******************** *************************************** HS_haplotype1 AACCCGGGCTTCCCTCCTCCCCCACGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA HS_assemblymutate_np1212 AACCCGGGCTTCCCTCCTCCCCCAGGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA HS_haplotype2 AACCCGGGCTTCCCTCCTCCCCCAGGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA ************************ *********************************** HS_haplotype1 AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAAATAAATAAATATAATAGAA HS_assemblymutate_np1212 AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAGAAAAAGAAATATAATAGAA HS_haplotype2 AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAGAAAAAGAAATATAATAGAA **************************************** * *** ************* HS_haplotype1 AAACAATAAGATATTATGTTATGAACTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT HS_assemblymutate_np1212 AAACAATAAGATATTATTTTATGAGCTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT HS_haplotype2 AAACAATAAGATATTATTTTATGAGCTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT ***************** ****** *********************************** HS_haplotype1 GGCAAGCACTTTGGTCCCACCCCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA HS_assemblymutate_np1212 GGCAACCACTTTGGTCCCACCGCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA HS_haplotype2 GGCAACCACTTTGGTCCCACCGCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA ***** *************** ************************************** HS_haplotype1 ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAACTGTGATCTAGACA HS_assemblymutate_np1212 ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAACTGTGATCTAGACA HS_haplotype2 ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAAATGTGATCTAGACA ********************************************** ************* HS_haplotype1 GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG HS_assemblymutate_np1212 GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG HS_haplotype2 GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG ************************************************************ HS_haplotype1 CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA HS_assemblymutate_np1212 CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA HS_haplotype2 CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA ************************************************************ HS_haplotype1 ACAACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC HS_assemblymutate_np1212 ACCACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC HS_haplotype2 ACCACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC ** ********************************************************* HS_haplotype1 TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCATCTGTTTTCATAAATAAATGGCTA HS_assemblymutate_np1212 TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCATCTGTTTTCATAAATAAATGGCTA HS_haplotype2 TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCACCTGTTTTCATAAATAAATGGCTA ************************************ *********************** HS_haplotype1 CTATGAGACCACCTCACGCGATTGCAGGAGTTCTTTTGTTCAGGAGACCAGTACAGAGAT HS_assemblymutate_np1212 CTATGAGACCACCTCACGCGATTGCAGGAGTTCTTTTGTTCAGGAGACCAGTACAGAGAT HS_haplotype2 CTATGAGACCACCTCAGGCGATTGCAGGAGATCCTTTGTTCAGGAGACCAGTACAGAGAT **************** ************* ** ************************** HS_haplotype1 TTCTCAGTTTATCTACCCTCTATACCACAAAGGAAGCCTCAGAGTAGGGGGTTAAATGCA HS_assemblymutate_np1212 TTCTCAGTTTATCTACCCTCTATACCACAAAGGAAGCCTCAGAGTAGGGGGTTAAATGCA HS_haplotype2 TTCTCAGTTTATCTACCCTCTATACCAAAAAGGAAGCGTCAGAGTAGGGGGTTAAATGCA *************************** ********* ********************** HS_haplotype1 CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGAGAAGCTGGTA HS_assemblymutate_np1212 CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGAGAAGCTGGTA HS_haplotype2 CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGGGAAGCTGGTA ************************************************* ********** HS_haplotype1 TGGTCGGTTCATACCTTTCCCTGGGGCTCGCAATGTCAGTCACTGGGAAATCCCAAATGT HS_assemblymutate_np1212 TGGTCGGTTCATACCTTTCCCTGGGGCTCGCAATGTCAGTCACTGGGAAATCCCAAATGT HS_haplotype2 TGGTCGGTTCATACCTTTCCCTGGGGCTCCCAATGTCAGTCACTGGGAAATCCCAAATGT ***************************** ****************************** HS_haplotype1 CATTTGAGATAAGTGGCTGGTAGATGTATGTATATACACCATCACGGTTGGCAGAAAATT HS_assemblymutate_np1212 CATTTGAGATAAGTGGCTGGTAGATAGATGTATATACACCATCACGGTTGGCAGAAAATT HS_haplotype2 CATTTGAGATAAGTGGCTGGTAGATAGATGTATATACACCATCACGGTTGGCAGAAAATT ************************* ********************************* HS_haplotype1 TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG HS_assemblymutate_np1212 TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG HS_haplotype2 TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG ************************************************************ HS_haplotype1 CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTAGAGGAGTTCAA HS_assemblymutate_np1212 CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTACAGGAGTTCAA HS_haplotype2 CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTACAGGAGTTCAA ************************************************* ********** HS_haplotype1 GCCCCATTTATTAATGCCTGGGCTCTGTCTGGAGGCGCAAAACAAAATCACTCCATTCAG HS_assemblymutate_np1212 GCCCCATTTATTAATGCCTGGGCTCTGTCTGGCGGCGCAAAACAAAATCACTCCATTCAG HS_haplotype2 GCCCCATTTATTAATGCCTGGGCTCTGTCTGGCGGCGCAAAACAAAATCACTCCATTCTG ******************************** ************************* * HS_haplotype1 ACGATCATTGAAATACAGGCGGCACACAGCTTTATAAAAACTCTACTTTTAGCCGAAGCC HS_assemblymutate_np1212 ACGATCATTGAAATACAGGCGGCACACAGCTTTATAAAAACTCTACTTTTAGCCGAAGCC HS_haplotype2 ACGATCATTGAAATACAGGCGGCACACAGCTTTCTAAAAACTCTACTTTTAGCCGAGGCC ********************************* ********************** *** HS_haplotype1 CCGCTGTTGTTTTGCTACAAAGAATTTATTCAAGACTGTGTTGGATTACAAAGAGGCTGC HS_assemblymutate_np1212 CCGCTGTTGTTTTGCTACAAAGAATTTATTCAAGACTGTGTTGGATTACAAAGAGGCTGC HS_haplotype2 CCGCAGTTGTTTTGCTAAAAAGAATTTATTCAAGGCTGTGTTGGATTACAAAGAGGCTGC **** ************ **************** ************************* HS_haplotype1 CACACAAGTGGCTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG HS_assemblymutate_np1212 CACACAAGTGGCTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG HS_haplotype2 CACACAAGTGACTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG ********** ************************************************* HS_haplotype1 GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATCGATCACTACTACAGTAAGCAGCGTAA HS_assemblymutate_np1212 GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATCGATCACTACTACAGTAAGCAGCGTAA HS_haplotype2 GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATTGATCACTACTACAGTAAGCAGCGTAA ********************************* ************************** HS_haplotype1 GTAACTCCCAGGCCTCCCTGAAGAAAGTTCAATTTTAGAGAGTCTCGGTCAAGCAGATGG HS_assemblymutate_np1212 GTAACTCCCAGGCCTCCCTGAAGAAAGATCACTTTTAGAGAGTCTCGGTCAAGCAGATGG HS_haplotype2 GTAACTCCCAGGCCTCCCTGAAGAAAGATCACTTTTAGAGAGTCTCGGTCAAGCAGATGG *************************** *** **************************** HS_haplotype1 GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT HS_assemblymutate_np1212 GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT HS_haplotype2 GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT ************************************************************ HS_haplotype1 GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC HS_assemblymutate_np1212 GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC HS_haplotype2 GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC ************************************************************ HS_haplotype1 ATGTAGGAGACCAGATCACATCGACAATGAATTATTTCATAAAACTCCAGCTAGTAGTCA HS_assemblymutate_np1212 CTGTAGGAGACCAGATCACATCCACAATGAATTATTTCATAAAACTCCAGCTTGTAGTCA HS_haplotype2 CTGTAGGAGACCAGATCACATCCACAATGAATTATTTCATAAAACTCCAGCTTGTAGTCA ********************* ***************************** ******* HS_haplotype1 TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTGGGTTTTCTCACTGAATCTGA HS_assemblymutate_np1212 TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTGGGTTTTCTCACTGAATCTGA HS_haplotype2 TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTCGGTTTTCTCACTGAATCTGA *************************************** ******************** HS_haplotype1 TTTGGATCGCTGGGTTCGTGCTGATGAGAGAGAATCAACATGTCTGCCACATTCATCCTC HS_assemblymutate_np1212 TTTGGATCGCTGGGTTCGTGCTGATGAGAGAGAATCAACATGTCTGCCACATTCATCCTC HS_haplotype2 TTTGGATCGCTGGGTTCGTGCTGATGACAGAGAATCAACATGTCTGCCACATTCATCCTC *************************** ******************************** HS_haplotype1 AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAATCACCTTGC HS_assemblymutate_np1212 AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAATCACCTTGC HS_haplotype2 AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAACCACCTTGC *************************************************** ******** HS_haplotype1 CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAAAGTGGCACAATGTTTG HS_assemblymutate_np1212 CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAAAGTGGCACAATGTTTG HS_haplotype2 CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAAAGTGGCACAATGTTTG ************************************************************ HS_haplotype1 AACCCATATTTTCTTTCTTCATGTTGTAGTGATTCTAATGTCCACGACTCACTCCAGGCA HS_assemblymutate_np1212 AACCCATATTTTCTTTCTTCATGTTGTAGTGATTCTAATGTCCACGACTCACTCCAGGCA HS_haplotype2 AACCCATATCTTCTTTCTTCATGTTGTAGTGATTCTAATGTCCACGACTCACTCCAGGCA ********* ************************************************** HS_haplotype1 GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC HS_assemblymutate_np1212 GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC HS_haplotype2 GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC ************************************************************ HS_haplotype1 CAAGATTATTTCCATAGAATTGGCTAGAAAAGAGGATCTAGATAGTAAGTTGTCAATGAT HS_assemblymutate_np1212 CAAGATTATTTCCATAGAATTGGTTAGAAAAGAGGATCTAGATAGTATGTTGTCAATGAT HS_haplotype2 CAAGATTATTTCCATAGAATTGGTTAGAAAAGAGGATCTAGATAGTATGTTGTCAATGAT *********************** *********************** ************ HS_haplotype1 GAACCTGTCAAGTGCTAATCCTGCGTGTGTGTTTTGTTATGGAAGATGGATAAGTGATTT HS_assemblymutate_np1212 GAACCTGTCAAGTGCTAATCCTGCTTGTGTGTTTTGTTATGGAAGATGGATAAGTGATTT HS_haplotype2 GAACCTGTCAAGTGCTAATCCTGCTTGTGTGTTTTGTTATGGAAGATGGATAAGTGATTT ************************ *********************************** HS_haplotype1 GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT HS_assemblymutate_np1212 GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT HS_haplotype2 GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT ************************************************************ HS_haplotype1 CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAGGTTAGAGAATGAACAGGTGCCTGGAT HS_assemblymutate_np1212 CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAGGTTAGAGAATGAACAGGTGCCTGGAT HS_haplotype2 CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAAGTTACAGAATGAACAGGTGCCTGGAT ********************************* **** ********************* HS_haplotype1 TACTGTCCAAAGCTTCTTAGATGGAACTGGGATCTCAGCAGAAAAATGTGCTAAGATTCA HS_assemblymutate_np1212 TACTGTCCAAAGCTTCTTAGATGGAACTGGGATCTCAGCAGAAAAATGTGCTAAGATTCA HS_haplotype2 TACTGTCCAAAGCTTCTGAGATGGAAATGGGAGCTCAGCAGAAAAATGTGCTAAGATTCA ***************** ******** ***** *************************** HS_haplotype1 TCCAGTTATTGAAAATTATTTCTCTGTCTCGAAGGGATTGCTGGGGACTGCAGTTTTTTG HS_assemblymutate_np1212 TCCAGTTATTGAAAATTATTTCTCTGTCTCGAAGGGATTGCTGGGAACTGCAGTTTTTTG HS_haplotype2 TCCAGTTATTGAAAATTATTTCTCTGTCTCGAAGGGATTGCTGGGAACTGCAGTTTTTTG ********************************************* ************** HS_haplotype1 GCTGGCCACTTTCCCTATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT HS_assemblymutate_np1212 GCTGGCCACTTTCCCGATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT HS_haplotype2 GCTGGCCACTTTCCCGATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT *************** ******************************************** HS_haplotype1 AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG HS_assemblymutate_np1212 AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG HS_haplotype2 AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG ************************************************************ HS_haplotype1 CCATTCCAGCTTATCTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC HS_assemblymutate_np1212 CCATTCCAGCTTATTTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC HS_haplotype2 CCATTCCAGCTTATTTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC ************** ********************************************* HS_haplotype1 AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGCAAATTCCTGCTTGGGAGGGAGGCC HS_assemblymutate_np1212 AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGTAAATGCCTGCTTGGGAGGGAGGCC HS_haplotype2 AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGTAAATGCCTGCTTGGGAGGGAGGCC *********************************** **** ******************* HS_haplotype1 GAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG HS_assemblymutate_np1212 GAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG HS_haplotype2 GAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG ************************************************************ HS_haplotype1 GATTAGGGATGTAATGAGCCGTAGTAAAATGATTCTCTCGAACAGTCTGGCCCACCAATA HS_assemblymutate_np1212 GATTAGGGATGTAATGAGCCATAGTAAAATGATTGTCTCGAACAGTCTGGCCCACCAATA HS_haplotype2 GATTAGGGATGTAATGAGCCATAGTAAAATGATTGTCTCGAACAGTCTGGCCCACCAATA ******************** ************* ************************* HS_haplotype1 TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA HS_assemblymutate_np1212 TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA HS_haplotype2 TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA ************************************************************ HS_haplotype1 AAGATCGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA HS_assemblymutate_np1212 AAGATGGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA HS_haplotype2 AAGATGGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA ***** ****************************************************** HS_haplotype1 TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA HS_assemblymutate_np1212 TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA HS_haplotype2 TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA ************************************************************ HS_haplotype1 ATAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGAGTTCCAAC HS_assemblymutate_np1212 AAAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGAGTTCCAAC HS_haplotype2 AAAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGAGTTCCAAC * ********************************************************** HS_haplotype1 AACATGCTGTGTATTTCAGACAATGCAGTTTGTTATGCAATGAGGAAGGGAGGAAACCAC HS_assemblymutate_np1212 AACATGCTGTGTATTTCAGACAATGCAGTTTGTTATGCAATGAGGAAGGGAGGAAACCAC HS_haplotype2 AACATGCTGTGTATTTCAGACAATGCAGTTAGTTATGCAATGAGGGAGGGAGGAAACCAC ****************************** ************** ************** HS_haplotype1 TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTGAGGATGGAAATTTATT HS_assemblymutate_np1212 TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTGAGGATGGAAATTTATT HS_haplotype2 TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTTAGGATGGAAATTTATT ******************************************* **************** HS_haplotype1 TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA HS_assemblymutate_np1212 TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA HS_haplotype2 TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA ************************************************************ HS_haplotype1 AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT HS_assemblymutate_np1212 AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT HS_haplotype2 AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT ************************************************************ HS_haplotype1 GGGCTCATTCAATATAGAGATTCTATCTGGGGAACTTTCCATTTGTGTGTCTCAGGAGGA HS_assemblymutate_np1212 GGGCTCATTCAATATAGAGATTCTATCTGGGGAACTTTCTATTTGTGTGTCTCAGGAGGA HS_haplotype2 GGGCTCATTCAATATAGAGATTCTATCTGGGGAACTTTCTATTTGTGTGTCTCAGGAGGA *************************************** ******************** HS_haplotype1 TTAGCAAGGAATGGATGATGTAAGGTTTCTCCCGTTTCTCTGTCACCGAGGTTTCAACCC HS_assemblymutate_np1212 TTAGCCAGGAAGGGATGATGTAAGGTTTCTCCCTTTTCTCTGTCACCGAGGTTTCAACCC HS_haplotype2 TTAGCCAGGAAGGGATGATGTAAGGTTTCTCCCTTTTCTCTGTCACCGAGGTTTCAACCC ***** ***** ********************* ************************** HS_haplotype1 AGACACTACCCTATGCTGCACATTCTTCATCGGCTCAGACAGCTAATGAGAAGAATAAGT HS_assemblymutate_np1212 AGACACTACCCTAGGCTGCACATTCTTCATCGGCTCAGGCAGCTAATGAGAAGAATAAGT HS_haplotype2 AGACACTACCCTAGGCTGCACATTCTTCATCGGCTCAGGCAGCTAATGAGAAGAATAAGT ************* ************************ ********************* HS_haplotype1 TAAGTGAGAATATCTTTAAAACACAGCGTGCCACATTAAAAAATGCCATTCATAGTGTGG HS_assemblymutate_np1212 TAAGTGAGAATATCTTTAAAACACAGCGTGCCACCTTAAAAAATGCCATTCATAGTGTGG HS_haplotype2 TAAGTGAGAATATCTTTAAAACACAGCGTGCCACCTTAAAAAATGCCATTCATAGTGTGG ********************************** ************************* HS_haplotype1 AAGGTCCCGCCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGATTGGCT HS_assemblymutate_np1212 AAGGTCCCGCCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGATTGGCT HS_haplotype2 AAGGTCCCGTCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGCTTGGCT ********* ******************************************* ****** HS_haplotype1 GGGCTGCTCACACCAAGTGCAGAAACAGCACCTCAGCAACTTTAGGGGAGCCAATACTAA HS_assemblymutate_np1212 GGGCTGCTCACACCAAGTGCAGAAACAGCACCTCAGCAACTTTAGGGGAGCCAATACTAA HS_haplotype2 GGGCTGCTCACACCAAGTGCAGAAACAGCACCTCAGCAACTTTAGGGGAGTCAATACTAA ************************************************** ********* HS_haplotype1 TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGAATGCCACCGTGCTGTAC HS_assemblymutate_np1212 TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGAATGCCACCGTGCTGTAC HS_haplotype2 TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGACTGCCACCGTGCTGTAC ******************************************* **************** HS_haplotype1 TCATCCAGGAATTAGGTACTGGCCAGCCTCAGAAGCTCTGCAGTGCCCTGCCTTTAACCA HS_assemblymutate_np1212 TCATCCAGGAATTAGGTACTGGCCAGCCTCAGAAGCTCTGCAGTGCCCTGCCTTTAACCA HS_haplotype2 TCATCCAGGAATTAGGCACTGACCAGCCTCAGAAGCTCTGCAGTGCCCTGCCTTTAACCA **************** **** ************************************** HS_haplotype1 GGGAGGGAGAAAAATAGAAGGCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG HS_assemblymutate_np1212 GGGAGGGAGAAAAATAGAAGCCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG HS_haplotype2 GGGAGGGAGAAAAATAGAAGCCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG ******************** *************************************** HS_haplotype1 TCGACTGGGGCAACAATTGAATGGGGCGGGAGGTATAACACCACTGGGGAGGCGAGGTCC HS_assemblymutate_np1212 TCGACTGGGGCAACAATTGAATGGGGCCGGAGGTTTAACACCACTGGGGAGGCGAGGTCC HS_haplotype2 TCGACTGGGGCAACAATTGAATGGGGCCGGAGGTTTAACACCACTGGGGAGGCGAGGTCC *************************** ****** ************************* HS_haplotype1 GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGACCTTTCT HS_assemblymutate_np1212 GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGCCCTTTCT HS_haplotype2 GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGCCCTTTCT **************************************************** ******* HS_haplotype1 TTGAAAACATGAGTTTGATTCTCTCACTGAGATCTGCAAGAGGAGACGGTTCTTTTCAAT HS_assemblymutate_np1212 TTGAATACATGAGTTTGATTCTCTCACTGAGATCTGCAAGAGGAGACGGTTCTTTTCAAT HS_haplotype2 TTGAATACATGAGTTTGATTCTCTCACTGAGATCTGCAAGAGGAGACGGTTCTTTTCAAT ***** ****************************************************** HS_haplotype1 TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA HS_assemblymutate_np1212 TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA HS_haplotype2 TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA ************************************************************ HS_haplotype1 GGAGAGGGCAGAGGAGAAATCTATTTATTTTCCTGGTGGCTAAGAAGGACAGCACCAACC HS_assemblymutate_np1212 GGAGAGGGCAGAGGAGAAATCTATTTATTATCCTGGTGGCTAAGAAGGACAGCACCAACC HS_haplotype2 GGAGAGGGCAGAGGAGAAATCTATTTATTATCCTGGTGGCTCAGAAAGACAGCACCAACC ***************************** *********** **** ************* HS_haplotype1 ATCTTAGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG HS_assemblymutate_np1212 ATCTTAGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG HS_haplotype2 ATCTTAGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG ************************************************************ HS_haplotype1 AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA HS_assemblymutate_np1212 AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA HS_haplotype2 AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA ************************************************************ HS_haplotype1 CTAGGAAGGTAGAATAGTGTTGGGCACCATTTGCATTGTCCCTAGGAAGAACATGTTGCA HS_assemblymutate_np1212 CTAGGAAGGTAGAATAGTGTTGGGCACCATTTGCATTGTCCCTAGGAAGAACATGTTGCA HS_haplotype2 CTAGGAAGGTAGAATAGTGTTGGGCACCATTTGCATTGTCCCTAGGAAGAACATGTTGCA ************************************************************ HS_haplotype1 TTTTTAACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG HS_assemblymutate_np1212 TTTTTAACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG HS_haplotype2 TTTTTAACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG ************************************************************ HS_haplotype1 GAGCTCACATATGTGTGCCACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC HS_assemblymutate_np1212 GAGCTCACATATGTGTGCCACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC HS_haplotype2 GAGCTCACATATGTATGCCACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC ************** ********************************************* HS_haplotype1 TGGGAGATCTCCTGACTACTGTCTGACCTCGGGAGGTGAGGAAAATACGTTGATGGTTAC HS_assemblymutate_np1212 TGGGAGATCTCCTGACTACTGTCTGACCTCGGGAGGTGAGGAAAATACGTTGATGGTTAC HS_haplotype2 TGGGACATCTCCTGACTACTATCTGACCTCGGGAGGTGAGGAAAATACGTTGATGGTTAC ***** ************** *************************************** HS_haplotype1 CTAGCTGGACAAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA HS_assemblymutate_np1212 CTAGCTGGACAAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA HS_haplotype2 CTAGCTGGACGAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA ********** ************************************************* HS_haplotype1 AAAAAGACCAAGGAAACTCCATCCAGGTGTGCTCATAAAATCATAAGATAGGGCACGAAA HS_assemblymutate_np1212 AAAAAGACCAAGGAAACTCCATCCAGGTGTGCTCATAAAATCATAAGATAGGGCACGAAA HS_haplotype2 AAAAAGACCAAGGAAACTCCATCCAGGTGTGCTCATAAAATCAAAAGATAGGGCAAGAAA ******************************************* *********** **** HS_haplotype1 TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCAAAAGGTTAAGGA HS_assemblymutate_np1212 TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCTAAAGGTTAAGGA HS_haplotype2 TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCTAAAGGTTAAGGA *********************************************** ************ HS_haplotype1 TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG HS_assemblymutate_np1212 TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG HS_haplotype2 TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG ************************************************************ HS_haplotype1 CCTTGAGCAAGCCTTTGTTTCAGTTACATTTGGCTCTCCTATTGGTCCCCACTATATATT HS_assemblymutate_np1212 CCTTGAGCAAGCCTTTGTTTCAGTTACATTTGGCTCTCCTATTGGTCCCCACTATATATT HS_haplotype2 CCCTGAGCAAGCCTTTGTTTCAGTTACATTTGGCTCTCCTATTGGTCCCCACTATATATT ** ********************************************************* HS_haplotype1 CAGAAAGTACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTTTAAAAAC HS_assemblymutate_np1212 CAGAAAATACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTTTAAAAAC HS_haplotype2 CAGAAAATACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTCTAAAAAC ****** ********************************************* ******* HS_haplotype1 AAGAAAATGGATTTTGGGGCTTTGGCACCTTGGGAGACCAAGATAGCTCTATGACAATCC HS_assemblymutate_np1212 AAGAAAATGGATTTTGGGGCTTTGGCACCTTGGGAGACCAAGATAGCTCTATGACAATCC HS_haplotype2 AAGAAAATGGATTTTGGGGCTTTTGCACCTTGGGAGACCAAGATAGCTCTATGACAGTCC *********************** ******************************** *** HS_haplotype1 AGAGGCTATCTTCGCTAATGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG HS_assemblymutate_np1212 AGAGGCTATCTTCGCTAATGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG HS_haplotype2 AGAGGCTATCTTTGGTAATGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG ************ * ********************************************* HS_haplotype1 ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAAATT HS_assemblymutate_np1212 ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAAATT HS_haplotype2 ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAAATT ************************************************************ HS_haplotype1 ACAGCTCTTGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGCGCCTGGTGTCAGACCAA HS_assemblymutate_np1212 ACAGCTCTTGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGCGCCTGGTGTCAGACCAA HS_haplotype2 ACAGCTCTTGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGCGCCTGGTGTCAGACCAA ************************************************************ HS_haplotype1 AAAGAAGGAAGGGCGAAAGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT HS_assemblymutate_np1212 AAAGAAGGAAGGGCGAAAGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT HS_haplotype2 AAAGAAGGAAGGGCGAATGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT ***************** ****************************************** HS_haplotype1 TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGACCCTAACTGCGCAGGTGATGACA HS_assemblymutate_np1212 TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGCCCCTAACTGCGCAGGTGATGACA HS_haplotype2 TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGCCCCTAACTGCGCAGGTGATGACA ************************************ *********************** HS_haplotype1 GAGTTTATTTCGGTAAATGGATCAAAGAACACATTTATCTCCCATAATATATTAGAAAAG HS_assemblymutate_np1212 GAGTTTATTTCGGTAAATGGATCAAGGAACACATTTATCTCCCATAATATATTAGAAAAG HS_haplotype2 GAGTTTATTTCGGTAAATGGATCAAGGAACACATTTATCTCCCAAAATATATTAGAAAAG ************************* ****************** *************** HS_haplotype1 AAAGGACAGCGATCCTTAGCCATATAGGATGGCTCATCAGCCCCAGTCTCGACCATGAAG HS_assemblymutate_np1212 AAAGGACAGCCATCCTTAGCCATATAGGATGGCTCATCAGCCCCAGTCTCGACCATGAAG HS_haplotype2 AAAGGACAGCCATCCTTAGCCATATAGGATGGCTCATCAGCCCCAGTCTCGACCATGAAG ********** ************************************************* HS_haplotype1 AACACTTTTTTCCTTTGTCCTTGTCTCGCGCCTGGCCGTCACTCCTTATAGGGACAAACC HS_assemblymutate_np1212 AACACTTTTTTCCTTTGTCCTTGTCTCGCGCCTGGCCGTCACTCCTTATAGGGACAAACC HS_haplotype2 AACACATTTTTCCTTTGTCCTTGTCTCGCGCCTGGCCGTCACTCCTTATAGGGACGACCC ***** ************************************************* * ** HS_haplotype1 AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGACTGAGGTTAA HS_assemblymutate_np1212 AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGGCTGAGGTTAA HS_haplotype2 AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGGCTGAGGTTAA ************************************************* ********** HS_haplotype1 AGAGAATCAATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA HS_assemblymutate_np1212 AGAGAATCTATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA HS_haplotype2 AGAGAATCTATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA ******** *************************************************** HS_haplotype1 TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGAAAAAAATAATACCCTCTGTTC HS_assemblymutate_np1212 TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGCAAAAAATAATACCCTCTGTTC HS_haplotype2 TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGCAAAAAATAATACCCTCTGTTC ************************************** ********************* HS_haplotype1 GACCCGGCAGCGATTCCCTAGCCCAAACCAATAAAAACACCCGAGAGAATGGGGCGTGTC HS_assemblymutate_np1212 GACCCGGCAGCGATTCCCTAGCCCAAACCAATAAAAACACCCGAGAGAATGGGGCGTGTC HS_haplotype2 GACCCGGCAGCGATTCCTTAGCCCAAACCAATAAAAACACCCGAGAGAATGGGGCGTGTC ***************** ****************************************** HS_haplotype1 CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA HS_assemblymutate_np1212 CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA HS_haplotype2 CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA ************************************************************ HS_haplotype1 ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA HS_assemblymutate_np1212 ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA HS_haplotype2 ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA ************************************************************ HS_haplotype1 AATGTACGTGCCTTTCCATTGAAAGCTCAACATTCTGAAGTTTCAGGGTGACCTTGGCTG HS_assemblymutate_np1212 AATGTACGTGCCTTTCCATTGAAAGCTCAACACTCTGATGTTTCAGAGTGACCTTGGCTG HS_haplotype2 AATGTACGTGCCTTTCCATTGAAAGCTCAACACTCTGATGTTTCAGAGTGACCTTGGTTG ******************************** ***** ******* ********** ** HS_haplotype1 TCATATTTTCAAAAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCGGGCCTGGTA HS_assemblymutate_np1212 TCATATTTTCACAAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCCGGCCTGGAA HS_haplotype2 TCATATTTTCACAAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCCGGCCTGGAA *********** ************************************** ******* * HS_haplotype1 TCCACAGTTTGGAAGATTAACATGTTAATGTGATTACAGCTACCAGGCAGATTCAGTTAC HS_assemblymutate_np1212 TCCACAGTTTGGAAGATTAACATGTTAGTGTGATTACAGCTACCAGGCAGATTCAGTTAC HS_haplotype2 TCCACAGTTTGGAAGATTAACATGTTAGTGTGATTACAGCTACCAGGCAGATTCAGTTAC *************************** ******************************** HS_haplotype1 TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGCACGAGCCATGTAAGTAAACATTATAT HS_assemblymutate_np1212 TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGTACGAGCCATGTAAGTAAACATTATAT HS_haplotype2 TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGTACGAGCCATGTAAGTAAACATTATAT ********************************* ************************** HS_haplotype1 CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG HS_assemblymutate_np1212 CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG HS_haplotype2 CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG ************************************************************ HS_haplotype1 GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAGCA HS_assemblymutate_np1212 GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAACA HS_haplotype2 GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAACA ********************************************************* ** HS_haplotype1 TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTCTCTAAACAATCC HS_assemblymutate_np1212 TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTCTCTAAACAATCC HS_haplotype2 TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTTTCTAAACAATCC *********************************************** ************ HS_haplotype1 TAGGAAGTGCAGACCCTCCCAGCAGTGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG HS_assemblymutate_np1212 TAGGAAGTGCAGACCCTCCCAGCAGTGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG HS_haplotype2 TAGAAAGTGCATACCCTCCCAGGAGGGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG *** ******* ********** ** ********************************** HS_haplotype1 ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC HS_assemblymutate_np1212 ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC HS_haplotype2 ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC ************************************************************ HS_haplotype1 TGGAGAAGAAGTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT HS_assemblymutate_np1212 TGGAGAAGAAGTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT HS_haplotype2 TGGAGAAGAACTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT ********** ************************************************* HS_haplotype1 GTGTGCCTAGGCGCGGTCATGGCTCACCACACTGGGACTCGACCGCCCGGGAGAATTAAG HS_assemblymutate_np1212 GTGTGCCTAGGCGCGGTCATGGCTCACCACACTGGGACTCGACCGCCCGGGAGAATTAAG HS_haplotype2 GTGTGCCTAGGCGCGGGCATGGCTCACCACACTGGGACTCGACCGCCCGGGAAAATTAAG **************** *********************************** ******* HS_haplotype1 AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTTTTGGACGGAA HS_assemblymutate_np1212 AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTTTTGGACGGAA HS_haplotype2 AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTTTTGGACGGAA ************************************************************ HS_haplotype1 GGCCCTGAGGGATTATTTAATTGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC HS_assemblymutate_np1212 GGCCCTGAGGGATTATTTAATTGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC HS_haplotype2 GGCCCTGAGGGATTATTTAATAGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC ********************* ************************************** HS_haplotype1 AGATGTTTGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGTATGGATGCCCCTTCTCAG HS_assemblymutate_np1212 AGATGTTTGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGTATGGATGCCCCTTCTCAG HS_haplotype2 AGATGTATGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGAATGGATGCCCCTTCTCAG ****** ********************************** ****************** HS_haplotype1 TGAGCTCCAACTGCTTTCCAAATGCCTCAGGATGGGATTTCAACAAGAATTAGATTTTTT HS_assemblymutate_np1212 TGATCTCCAACTGCTTTCCAAATGCCTCAGGATGGGATTTCAACAAGAATTAGATTTTTT HS_haplotype2 TGATCTCCAACTGCTTTCCAAATGCCTCAGGATGGGATTTAAACAAGAATTAGATTTTTT *** ************************************ ******************* HS_haplotype1 TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG HS_assemblymutate_np1212 TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG HS_haplotype2 TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG ************************************************************ HS_haplotype1 GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGGTAACAGAAA HS_assemblymutate_np1212 GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGGTAACAGAAA HS_haplotype2 GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGTTAACAGAAA ************************************************** ********* HS_haplotype1 TCTTGTTTTCCATGAGATATAAGTGACTTGTGTTTGTTGTTAATCATGACCTAGGCTGAG HS_assemblymutate_np1212 TCTTGTTTTCCATGAGATATAAGTGACTTGTGTTTGTTGTTAATCATGACCTAGGCTCAG HS_haplotype2 TGTTGTTTTCCATGAGATATAAGTGACTTGTGTTTGTTGTTAATCATGACCTAGGCTCAG * ******************************************************* ** HS_haplotype1 CTAGCCATGCAGACTCCAGGAGTTCTCATTATAGATTCTCAAAAGTAGTGTATTTCCTGC HS_assemblymutate_np1212 CTAGCCATGCAGACTCCAGGAGTTCTCATTATAGATTCTCAAAAGTAGTGTATTTCCTGC HS_haplotype2 CTAGCCATGCAGACTCCAGGAGTTCTCATTATAGATTCTCAAAAGTAGTGTATTTCCTGC ************************************************************ HS_haplotype1 TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATTAGGT HS_assemblymutate_np1212 TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATTAGGT HS_haplotype2 TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATCAGGT ******************************************************* **** HS_haplotype1 GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTCGAGGGTTTTACCGAAATGACGTGA HS_assemblymutate_np1212 GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTCGAGGGTTTTACCGAAATGACGTGA HS_haplotype2 GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTCGAGGGTTTTACCGAAATGACGTCA ********************************************************** * HS_haplotype1 CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG HS_assemblymutate_np1212 CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG HS_haplotype2 CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG ************************************************************ HS_haplotype1 AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA HS_assemblymutate_np1212 AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA HS_haplotype2 AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA ************************************************************ HS_haplotype1 TCTTCGGGAGGAGAGACATGGTCTGGGAAGTTGTCCGGCCGTCTTAGGTTCAAGCTCACT HS_assemblymutate_np1212 TCTTCGGGAGGAGAGACATGGTCTGGGAAGGTGTCCGGCCGTCTTAGGTTCAAGCTCACT HS_haplotype2 TCTTCGGGAGGAGAGACATGGTCTGGGAAGGTGTCCGGCCGTCTTAGGTTCAAGCTCACT ****************************** ***************************** HS_haplotype1 ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAGGTCTCACT HS_assemblymutate_np1212 ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAGGTCTCACT HS_haplotype2 ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAAGTCTCACT *************************************************** ******** HS_haplotype1 TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG HS_assemblymutate_np1212 TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG HS_haplotype2 TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG ************************************************************ HS_haplotype1 CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA HS_assemblymutate_np1212 CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA HS_haplotype2 CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA ************************************************************ HS_haplotype1 GGCCGCGGGCCCTGTTAAAGGTTTTTGTTGATGAGCTGTCTGTAATGTAATAGTAGTTTT HS_assemblymutate_np1212 GGCCGCGGGCCCTGTTAAAGGTTTTTGTTGATGAGCTGTCTGTAATGTAATAGTAGTTTT HS_haplotype2 GGCCGCGGGCCCTGTTAAAAGTTTTTGTTGATGAGCTGTCTGTAGTGTAATAGTAGTTTT ******************* ************************ *************** HS_haplotype1 TACCCAGCCTGCCCTTAGCTCCTGCCCGGGTATGGTACGCTGCTCTCCTATCCACGCCTG HS_assemblymutate_np1212 TACCCAGCCTGCCCTTAGCTCCTGCCCGGGTATGGTACGCTGCTCTCCTATCCACGCCTG HS_haplotype2 TACCCAGCCTGCCCTTAGCTCCTGCCCGGTTATGGTAGGCTGCTCTCCTATCCACGCCTG ***************************** ******* ********************** HS_haplotype1 GTCTTATAAAATGCATAGAGGATCAGAAAAATTTATTTTTGGATAGGAAGTGCTGCTGCA HS_assemblymutate_np1212 GTCTTATAAAATGCATAGAGGATCAGAAAAATTTATTTTTGGATAGGAAGTGCTGCTGCG HS_haplotype2 GTCTTATAAAATGCATAGAGGATCAGAAAAATTTATTTTTGGATAGGAAGTGCTGCTGCG *********************************************************** HS_haplotype1 TTCCGGTGGCAGGCTGATCCCTTTTCCTTATCAGGATGAGTTCCAAGACGAGATGGATAG HS_assemblymutate_np1212 TTCCGGTGGCAGGCTGACCCCTTTTCCTTATCAGGATGAGTTCCAAGACGAGATGGATAG HS_haplotype2 TTCCGGTGGCAGGCTGACCCCTTTTCCTTATCAGGATGAGTTCCAAGACGAGATGGATAG ***************** ****************************************** HS_haplotype1 CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA HS_assemblymutate_np1212 CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA HS_haplotype2 CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA ************************************************************ HS_haplotype1 GAAACTGAGGCCCACCTAAAATACCCAGAGGGCCGAGTGATTTGACATGCCACGAATAAC HS_assemblymutate_np1212 GAAACTGAGGCCCACCTAAAATACCCAGAGGGCCGAGTGATTTGACATACCACGAATAAC HS_haplotype2 GAAACTGAGGCCCACCTAAAATACCCAGAGGGCCGAGTGATTTGACATACCACGAATAAC ************************************************ *********** HS_haplotype1 TCTGTCTCTAGGAACTGTAATCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG HS_assemblymutate_np1212 TCTGTCTCTAGGAACTGTACTCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG HS_haplotype2 TCTGTCTCTAGGAACTGTACTCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG ******************* **************************************** HS_haplotype1 CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGGGAACCA HS_assemblymutate_np1212 CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGCGAACCA HS_haplotype2 CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGCGAACCA ***************************************************** ****** HS_haplotype1 GCTGGAGCGTTTGAGGAGATAACAAGAGAAATTGAATAAACCCTCTTCACAGAAAAAAGC HS_assemblymutate_np1212 GCTGGAGTGTTTGAGGAGATAACAAGAGAAATTGAAAAAACCCTCTTCACAGGAAAAAGC HS_haplotype2 GCTGGAGTGTTTGAGGAGATAACAAGAGAAATTGAAAAAACCCTCTTCACAGGAAAAAGC ******* **************************** *************** ******* HS_haplotype1 AATACAAATCAATTACGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT HS_assemblymutate_np1212 AATACAAATCAATTAAGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT HS_haplotype2 AATACAAATCAATTAAGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT *************** ******************************************** HS_haplotype1 TCAGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAAAA HS_assemblymutate_np1212 TCCGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAATA HS_haplotype2 TCCGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAATA ** ******************************************************* * HS_haplotype1 ATTCAAGTTTTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT HS_assemblymutate_np1212 ATTCAAGTATTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT HS_haplotype2 ATTCAAGTATTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT ******** *************************************************** HS_haplotype1 ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAATCCAGACATCACTTCTC HS_assemblymutate_np1212 ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAACCCAGACATCACTTCTC HS_haplotype2 ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAACCCAGACATCACTTCTC ******************************************* **************** HS_haplotype1 TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT HS_assemblymutate_np1212 TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT HS_haplotype2 TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT ************************************************************ HS_haplotype1 GGTCCTAGAACATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATATTATTCC HS_assemblymutate_np1212 GGTCCTAGAAGATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATATTATTCC HS_haplotype2 GGTCCTAGAAGATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATAATATTCC ********** ****************************************** ****** HS_haplotype1 TCAGATTCTGCCCTACAACCTCCCATGACAATTCCCCAGTAGAGAACCCACCTGCCCACC HS_assemblymutate_np1212 TCAGATTCTGGCCTACAACCTCCCATGACAATTCCCCAGTAGAGAACCCACCTGCCCACC HS_haplotype2 TCAGATTCTGGCCTACAACCTCCCATGATCATTCCCCAGTAGAGAACCCACCTGCCCATC ********** ***************** **************************** * HS_haplotype1 ATTCTTTGCAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC HS_assemblymutate_np1212 ATTCTTTGTAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC HS_haplotype2 ATTCTTTGTAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC ******** *************************************************** HS_haplotype1 CACGTTGCATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACAATCCTTGAGA HS_assemblymutate_np1212 CACGTTACATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACAATCCTTGAGA HS_haplotype2 CACGTTACATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACATTCCTTGAGA ****** ******************************************* ********* HS_haplotype1 TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGGCTCACTGAATCTGAGGCGT HS_assemblymutate_np1212 TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGGCTCACTGAATCTGAGGCGT HS_haplotype2 TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGTCTCACTGAATCTGGGGCGT **************************************** ************* ***** HS_haplotype1 GGCTATTGTCAGTCTCAGCTCAGGCGCAAGCCTGGAAATTATAAACGTTACCATGTATTG HS_assemblymutate_np1212 GGCTATTGTCAGTCTCAGCTCAGGCGCAAGCCTGGAAATTATAAACGTTACCATGTATTG HS_haplotype2 GGCTATTGTCAGTCTCAGCTCGGGCGCAAGCCTGGATATTATAAACGTTACCATGTATTG ********************* ************** *********************** HS_haplotype1 GATCCTGGGAGGTCAGAAACATCACCCCCATTGGCCTCACTTACGAAACTGCTGTGCACG HS_assemblymutate_np1212 GATCCTGGGAGGTCAGAAACATCACCCCCATTGGCCTCACTTACGAAACTGCTGTGCACG HS_haplotype2 GATCCTGGGAGGTCAGAAACATCACCCCCATTGGCCTTACTTACGAAACTGCTGTGCACG ************************************* ********************** HS_haplotype1 TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT HS_assemblymutate_np1212 TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT HS_haplotype2 TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT ************************************************************ HS_haplotype1 GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA HS_assemblymutate_np1212 GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA HS_haplotype2 GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA ************************************************************ HS_haplotype1 TTAGCAGCCTGGAGAGAAGACAATTAAGTTTAAATATTCCTATTTCTTACAGTCTTTGTT HS_assemblymutate_np1212 TTAGCAGCCTGGAGAGAAGACAATTAAGTTTAAATATTCCTATTTCTTACAGTCTTTGTT HS_haplotype2 TTAGCAGTCTGGAGAGAAGACAATTAAGTTAAAATATTCCTATTACTTACAGTCTTTGTT ******* ********************** ************* *************** HS_haplotype1 AAGCTGGGCTTCATTTCTCCATGAGTGCCTCACTGTTGGGACTAAAATTAGCTTCCAGGC HS_assemblymutate_np1212 AAGCTGGGCTTCATTTCTCCATGAGTGCCTCACTGTTGGGACTAAAATTAGCTTCCAGGC HS_haplotype2 AAGCTGGGCTTCATTTCTCCATGAGTGCCTCACTGTTGGGACTAAAATTAGCTTCCAGGC ************************************************************ HS_haplotype1 GTGAGAAGAGATCATCTGGGCAGACCGCAGCCCTTGACTTGCGCTGCTTTTATAATGGCG HS_assemblymutate_np1212 GTGAGAAGAGATCATCTGGGCAGACCGCAGCCCTTGACTTGCGCTGCTTTTATAATGGCA HS_haplotype2 GTGAGAAGAGATCATCCGGGCAGACCGCAGCCCTTGACTTGGGCTGCTTTTATAATGGCA **************** ************************ ***************** HS_haplotype1 TTATTTAGTTTCCTTCTTTTAATTTATTTGCTGGGTGGCCGAGTAAGTTCACTGTCAAAA HS_assemblymutate_np1212 TTATTTAGTTTCCTTCTTTTAATTTATTTGCTGGGTGGCCGAGTAAGTTCACTGTCAAAA HS_haplotype2 TTATTTAGTTTCCTTCTTTTAATTTATTTGCTGGGTGGCCGAGTAAGTTCACTGTCAAAA ************************************************************ HS_haplotype1 AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGATTATGCTCAAAC HS_assemblymutate_np1212 AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGAATATGCTCAAAC HS_haplotype2 AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGAATATGCTCAAAC ************************************************ *********** HS_haplotype1 TGAGTAATTGTAATATAAAATTTTATACTTTTCATGTGCTGTGCACCTTGGCTCTGGTTT HS_assemblymutate_np1212 TGAGTATTTGTAATATAAAATTTTATACTTTTCATGTGCTGTGCACCTTGGCTCTGGTTT HS_haplotype2 TGAGTATTTGTAATATAAAATTTTATACTTTTCATGTGCTGTGCACCCGGGCTCTGGTTT ****** **************************************** *********** HS_haplotype1 CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCTCTTTATCTGATGT HS_assemblymutate_np1212 CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCTCTTTATCTGATGT HS_haplotype2 CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCTCTTTATCTGATGT ************************************************************ HS_haplotype1 GTGGCAATCCTACCAACACACTACGGATGGTCAGGTGGTGTGTTGCACAGAGATGCCCTT HS_assemblymutate_np1212 GTGGCAATCCTACCAACACACTGCGGATGGTCAGGTGGTGTGTTGCACAGAGATGCCCTT HS_haplotype2 GTGGCAATCCTACCAACACACTGCGGATGGTCAGGTGGTGTGTTGCACAGAGATGCCCTT ********************** ************************************* HS_haplotype1 TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC HS_assemblymutate_np1212 TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC HS_haplotype2 TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC ************************************************************ HS_haplotype1 AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC HS_assemblymutate_np1212 AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC HS_haplotype2 AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC ************************************************************ HS_haplotype1 TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCAAACCAGTCATAAAAG HS_assemblymutate_np1212 TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCACACCAGTCATAAAAG HS_haplotype2 TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCACACCAGTCATAAAAG ********************************************* ************** HS_haplotype1 AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC HS_assemblymutate_np1212 AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC HS_haplotype2 AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC ************************************************************ HS_haplotype1 TAACAAAAATTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC HS_assemblymutate_np1212 TAACAAAAACTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC HS_haplotype2 TAACAAAAACTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC ********* ************************************************** HS_haplotype1 ACTCAGGGTTTCCCTCAGCTTGTCAAATTGGACAAATTGTCCATAAATTCATAAATGAAA HS_assemblymutate_np1212 ACTCAGGGTTCCCCTCAGCTTGTCAAATTGGACAAATTGTCCATAAATTCATAAATGAAA HS_haplotype2 ACTCAGGGTTCCCCTCAGCTTGTCAAATTGTACAAATTGTCCATAAATTCATAAATGAAA ********** ******************* ***************************** HS_haplotype1 ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG HS_assemblymutate_np1212 ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG HS_haplotype2 ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG ************************************************************ HS_haplotype1 TGAAGTCAATTGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA HS_assemblymutate_np1212 TGAAGTCAATAGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA HS_haplotype2 TGAAGTCAATAGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA ********** ************************************************* HS_haplotype1 GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT HS_assemblymutate_np1212 GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT HS_haplotype2 GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT ************************************************************ HS_haplotype1 AGCCACACTTTCTATCTATTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA HS_assemblymutate_np1212 AGCCACACTTTCTATCTTTTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA HS_haplotype2 AGCCACACTTTCTATCTTTTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA ***************** ****************************************** HS_haplotype1 GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT HS_assemblymutate_np1212 GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT HS_haplotype2 GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT ************************************************************ HS_haplotype1 TTATTTCCAACTTAACCTATATACCTGAGGAATTCCACTATTCCACTGTAATCAGCCTGT HS_assemblymutate_np1212 TTATTTCCAACTTAACCTATATACCTGAGGAATTCCACTATTCCACTGTAATCAGCCTGT HS_haplotype2 TTATTTCCAACTTAACCTATATACCTGAGAAATTCCACTATTCCACTGTAATCAGCCTGT ***************************** ****************************** HS_haplotype1 AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA HS_assemblymutate_np1212 AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA HS_haplotype2 AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA ************************************************************ HS_haplotype1 AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG HS_assemblymutate_np1212 AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG HS_haplotype2 AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG ************************************************************ HS_haplotype1 TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTACCTGATACC HS_assemblymutate_np1212 TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTACCTGATACC HS_haplotype2 TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTCCCTGATACC ************************************************** ********* HS_haplotype1 CCGGGGACCATGCAATTCCCCGACCCAGAAACCGTTCCTTAATAGCTTGGGTTTTATGTA HS_assemblymutate_np1212 CCGGGGACCATGCAATTCCCCGACCCAGAAACCGTTCCTTAATAGCTTGGGTTTTATGTA HS_haplotype2 CCGGGGACCATGCAATTCCCCGACCCAGAAACCCTTCCCTAATAGCTTGGGTTTTATGTA ********************************* **** ********************* HS_haplotype1 AAGGGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGT HS_assemblymutate_np1212 AAGGGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGT HS_haplotype2 AAGAGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGC *** ******************************************************* HS_haplotype1 TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTGAGCCAAAAACTAG HS_assemblymutate_np1212 TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTCAGCCAAAAACTAG HS_haplotype2 TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTCAGCCAAAAACTAG ********************************************** ************* HS_haplotype1 CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG HS_assemblymutate_np1212 CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG HS_haplotype2 CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG ************************************************************ HS_haplotype1 AGGTACCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC HS_assemblymutate_np1212 AGGTTCCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC HS_haplotype2 AGGTTCCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC **** ******************************************************* HS_haplotype1 AGCCGGCTCCACAACAACAGCCTTTTCGCACATAGGAGGCTTCAAATACGACATATATAC HS_assemblymutate_np1212 AGCCGGCACCACAACAACAGCCTTTTCGCACATAGGAGGCTTCATATACGACATATATAC HS_haplotype2 AGCCGGCACCACAACAACAGCCTTTTCGCACATAGGAGGCTTCATATACGACATATATAC ******* ************************************ *************** HS_haplotype1 GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT HS_assemblymutate_np1212 GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT HS_haplotype2 GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT ************************************************************ HS_haplotype1 AAAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTCCCAGATCACGCCGCCTCAAATC HS_assemblymutate_np1212 AAAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTGCCAGATCACGCCGCCTCAAATC HS_haplotype2 AAAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTGCCAGATCACGCCGCCTCAAATC ************************************* ********************** HS_haplotype1 ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGACTCACAGCAGGG HS_assemblymutate_np1212 ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGACTCACAGCAGGG HS_haplotype2 ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGGCTCACAGCAGGG *********************************************** ************ HS_haplotype1 AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCTGAGTAAA HS_assemblymutate_np1212 AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCTGAGTAAA HS_haplotype2 AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCTGAGTAAA ************************************************************ HS_haplotype1 GAGAAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTCTGTGTGC HS_assemblymutate_np1212 GAGAAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTGTGTGTGC HS_haplotype2 GAGAAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTGTGTGTGC **************************************************** ******* HS_haplotype1 AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC HS_assemblymutate_np1212 AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC HS_haplotype2 AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC ************************************************************ HS_haplotype1 TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGAAGTGCAT HS_assemblymutate_np1212 TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGCAGTGCAT HS_haplotype2 TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGCAGTGCAT **************************************************** ******* HS_haplotype1 GATTTTCACCCAGCACCCAGTGGGTCAGTAGCTCCTGACCACTGTTGAAGCCATTCCAAG HS_assemblymutate_np1212 GAATTTCACCCAGCACCCAGTGGGTCAGTAGCTCCTGACCACTGTTGAAGCCATTCCAAG HS_haplotype2 GAATTTCACCCAGCACCCAGTGGGTCAGTAGCTCCTGACCACTGTTGAAGCCATTCCAAG ** ********************************************************* HS_haplotype1 ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG HS_assemblymutate_np1212 ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG HS_haplotype2 ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG ************************************************************ HS_haplotype1 CTAAGTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA HS_assemblymutate_np1212 CTAATTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA HS_haplotype2 CTAATTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA **** ******************************************************* HS_haplotype1 AGGTTTTTCCTCCTCTGTTCAGCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT HS_assemblymutate_np1212 AGGTTTTTCCTCCTCTGTTGACCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT HS_haplotype2 AGGTTTTTCCTCCTCTGTTGACCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT ******************* * ************************************** HS_haplotype1 GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTGGTG HS_assemblymutate_np1212 GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTGGTG HS_haplotype2 GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTAGTG ******************************************************** *** HS_haplotype1 TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA HS_assemblymutate_np1212 TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA HS_haplotype2 TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA ************************************************************ HS_haplotype1 AATACTCCATCCTGCCTGTGCCTGACTCCCTCTGACTTGCCTCCGGCTACTCCCTACAGA HS_assemblymutate_np1212 AATACTCCATCCTGCCTGTGCCTGACTCCCTCTGACTTGCCTCCGGCTACTCCCTACAGA HS_haplotype2 AATACTCCATCCTGCCTGTGCCTGACTCCCTCAGACTTGCCTCCGGCTACTCCCTACAGA ******************************** *************************** HS_haplotype1 CCCCCGCCACCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAAGGGAATCAG HS_assemblymutate_np1212 CCCCCGCCACCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAAGGGAATCAG HS_haplotype2 CCCCCGCCACCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAGGGGAATCAG ************************************************** ********* HS_haplotype1 TCTCCTGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCAGCAGCAATGTAACATGTTAA HS_assemblymutate_np1212 TCTCCTGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCATCAGCAATGTAACATGTTAA HS_haplotype2 TCTCCTGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCATCAGCAATGTAACATGTTAA **************************************** ******************* HS_haplotype1 TACAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAAGACAAAAAGCAAGCAAAT HS_assemblymutate_np1212 TACAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAATACAAAAAGCAAGCAAAT HS_haplotype2 TTCAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAATACAAAAAGCAAGCAAAT * **************************************** ***************** HS_haplotype1 AAGCTGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT HS_assemblymutate_np1212 AAGCCGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT HS_haplotype2 AAGCCGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT **** ******************************************************* HS_haplotype1 CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT HS_assemblymutate_np1212 CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT HS_haplotype2 CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT ************************************************************ HS_haplotype1 GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATCATGTCT HS_assemblymutate_np1212 GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATAATGTCA HS_haplotype2 GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATAATGTCA ***************************************************** ***** HS_haplotype1 CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT HS_assemblymutate_np1212 CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT HS_haplotype2 CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT ************************************************************ HS_haplotype1 AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC HS_assemblymutate_np1212 AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC HS_haplotype2 AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC ************************************************************ HS_haplotype1 TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAATGAAAGGCTGGGGTACTAAGCCAC HS_assemblymutate_np1212 TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAATGAAAGGCTGGGGTACTAAGCCAC HS_haplotype2 TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAATGAAAGGCTGGGGTACTAAGCCAC ************************************************************ HS_haplotype1 CCAGCTACTGCGGTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG HS_assemblymutate_np1212 CCAGCTACTGCGGTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG HS_haplotype2 CCAGCTACTCCGCTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG ********* ** *********************************************** HS_haplotype1 GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA HS_assemblymutate_np1212 GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA HS_haplotype2 GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA ************************************************************ HS_haplotype1 CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG HS_assemblymutate_np1212 CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG HS_haplotype2 CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG ************************************************************ HS_haplotype1 GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGATTGTAAAGACACTGAGCA HS_assemblymutate_np1212 GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGATTGTAAAGACACTGAGCA HS_haplotype2 GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGCTTGTAAAGAAACTGAGCA ***************************************** ********* ******** HS_haplotype1 ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG HS_assemblymutate_np1212 ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG HS_haplotype2 ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG ************************************************************ HS_haplotype1 CTAGGAGCGCCGGGTTGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGACCCATCC HS_assemblymutate_np1212 CTAGGAGCGCCGGGTTGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGACCCATCC HS_haplotype2 CTAGGAGCGCCGGGTGGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGAGCCATCC *************** ************************************* ****** HS_haplotype1 CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCAAAAAACCC HS_assemblymutate_np1212 CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCGAAAAACCC HS_haplotype2 CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCGAAAAACCC *************************************************** ******** HS_haplotype1 AAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTACGCCAGCTCACGGGTGG HS_assemblymutate_np1212 GAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTACGCCAGCTCACGGGTGG HS_haplotype2 GAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTGCGCCAGCTCACGGGTGG ***************************************** ***************** HS_haplotype1 TCTTAGTATGTTGTCATTTAAAACTTGAATTAAAGAAGGGCTGCGACAGACGGAGTGTCT HS_assemblymutate_np1212 TCTTAGTATGTTGTCATTTAAAACTTGAATTAAAGAAGGGCTGCGACAGACGGAGTGTCT HS_haplotype2 TCTTAGTATGTTCTCATTTAAAACTTGAATTAAAGAAGGGCTGGGACAGATGGAGTGTCT ************ ****************************** ****** ********* HS_haplotype1 AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT HS_assemblymutate_np1212 AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT HS_haplotype2 AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT ************************************************************ HS_haplotype1 CTGTTTCTTGAGAGAAATCCAGTATGTGTATATTCTTTCCAGGGAATCCTTTTTGTACAA HS_assemblymutate_np1212 CTGTTTCTTGAGAGAAATCCAGTATGTGTATATTCTTTCCAGGGAATCCTTTTTGTACAA HS_haplotype2 CTGTTTCTTGAGAGAAATCCAGTATGTGTATAATCTTTCCAGGGAATCCTTTTTGTACAA ******************************** *************************** HS_haplotype1 AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC HS_assemblymutate_np1212 AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC HS_haplotype2 AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC ************************************************************ HS_haplotype1 ACTTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA HS_assemblymutate_np1212 ACCTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA HS_haplotype2 ACCTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA ** ********************************************************* HS_haplotype1 TTCAAGATTTCAGGTCAGTCGCCCATCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG HS_assemblymutate_np1212 TTCTAGATTCCAGGTCAGTCGCCCATCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG HS_haplotype2 TTCTAGATTCCAGGTCAGTCGCCCATCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG *** ***** ************************************************** HS_haplotype1 GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTCGACCCGCCCTCAGTTTGAGTTGTTT HS_assemblymutate_np1212 GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTAGACCCGCCCTCAGTTTGAGTTGTGT HS_haplotype2 GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTAGACCCGCCCTCAGTTTGAGTTGTGT ********************************** *********************** * HS_haplotype1 GTTTATCTATTAAAAACCGATGATGGGCTTAGCCAGAGCTCATTCATTTCTTTAAAGAAA HS_assemblymutate_np1212 GTTTATCTATTAAAAACCGATGATGGGCTTGGACAGAGCTCATTCATTTCTTTAAAGAAA HS_haplotype2 GTTTATCTATTAAAAACCGATGATGGGCTTGGACAGAGCTCATTCATTTCTTTAAAGAAA ****************************** * *************************** HS_haplotype1 AAATCTCTTCAGGAGAAGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG HS_assemblymutate_np1212 AAATCTCTTCAGGAGATGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG HS_haplotype2 AAATCTCTTCAGGAGATGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG **************** ******************************************* HS_haplotype1 GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGACCTCTTTTGTTTTGT HS_assemblymutate_np1212 GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGATCTCTTTTGTTTTGT HS_haplotype2 GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGATCTCTTTTGTTTTGT ********************************************* ************** HS_haplotype1 AATCTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT HS_assemblymutate_np1212 AATCTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT HS_haplotype2 AATCTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT ************************************************************ HS_haplotype1 TAACACTACAATATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA HS_assemblymutate_np1212 TAACACTACAATATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA HS_haplotype2 TAACACTACATTATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA ********** ************************************************* HS_haplotype1 TCATCTCAAAATGTGTGCTTGAAAGGTGCGAGTGATTACTCTGGTGCCTTGTTCCGAAGG HS_assemblymutate_np1212 TCATCTCAAAATGTGTGCTTGAAAGGTGCGAGTGATTACTCTGGTGCCTTGTTCCGAAGG HS_haplotype2 TCATCTCAAAATGTGTGCTTGAAAGGTGTGAGTGATTACTCTGGTGCCTTGTTCCGAAGG **************************** ******************************* HS_haplotype1 GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA HS_assemblymutate_np1212 GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA HS_haplotype2 GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA ************************************************************ HS_haplotype1 CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG HS_assemblymutate_np1212 CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG HS_haplotype2 CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG ************************************************************ HS_haplotype1 ACATGGTGGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCACGCCTA HS_assemblymutate_np1212 ACATGGTAGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCATGCCTA HS_haplotype2 ACATGGTAGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCATGCCTA ******* ********************************************** ***** HS_haplotype1 CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGGAGCAACCCCTTGAGACGGGAA HS_assemblymutate_np1212 CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGGAGCAACCCCTTGAGACGGGAA HS_haplotype2 CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGGAGCAACCCCTTGAGACGGGAA ************************************************************ HS_haplotype1 CAAATGTACAGGTCAATCTGTATTATTCGAGGAAGCTTGGGCAAGGGCCTCTGGTCTGAG HS_assemblymutate_np1212 CAAATGTACAGGTCAATCTGCATTATTCGAGGAAGCTGGGGCAAGGGCCTCTGGTCTGAG HS_haplotype2 CAAATGTACAGGTCAATCTGCATTATTCGAGGAAGCTGGGGCAAGGGCCTCTGGTCTGAG ******************** **************** ********************** HS_haplotype1 GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC HS_assemblymutate_np1212 GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC HS_haplotype2 GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC ************************************************************ HS_haplotype1 GCTCTGAAATTATTTGTTCAGTGAAAAGAAACAAAAGAACTCCACCAACCTGATTGAGTG HS_assemblymutate_np1212 GCTCTGAAATTATTTTTTCAGTGAAAAGAGACAAAAGAACTCCACCAACCTGATTGAGTG HS_haplotype2 GCTCTGAAATTATTTTTTCAGTGAAAAGAGACAAAAGAACTCCACCAACCTGATTGAGTG *************** ************* ****************************** HS_haplotype1 GAGAATCACTGTGGAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG HS_assemblymutate_np1212 GAGAATCACTGTGGAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG HS_haplotype2 GAGAATCACTGTGCAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG ************* ********************************************** HS_haplotype1 AATGGCTATTTTTTAATATCGCATGGAACTTCCCAGGCGGATTAGGCAGCTTGATTAACT HS_assemblymutate_np1212 AATGGCTATTTTTTAATATCGCATGGAACTTCCCAGGCGGATTAGGCAGCTTGATTAACT HS_haplotype2 AATGGCTATTTTTTAATATCACATGGAACTTCCCAGGCGGATTAGCCAGCTTGATTAACT ******************** ************************ ************** HS_haplotype1 GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCTGGGCAGAGAACCCAGTCTG HS_assemblymutate_np1212 GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCTGGGCAGAGAACCCAGTCTG HS_haplotype2 GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCTGGGCAGAGAACCCAGTCTG ************************************************************ HS_haplotype1 TGTGACAGCTTGAAGAAACTGACCTTAGTTAACTCCGCGGGTGGTGGCAACATTGCATTG HS_assemblymutate_np1212 TGTGACAGCTTGAAGAAACTGACCTTAGTTAACTCCGCGGGTGGTGGCAACATTGCATTG HS_haplotype2 TGTGACAGCTTGAAGAAACTGACCTTAGTTAACTCCGCGGGTGGTGGCAACATTGCATTG ************************************************************ HS_haplotype1 CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA HS_assemblymutate_np1212 CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA HS_haplotype2 CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA ************************************************************ HS_haplotype1 TTTGGCACCACAAGTATTTTTGGGGGGATACCCCACATGTTATTAGTGAAACAGGCGGGT HS_assemblymutate_np1212 TTTGGCACCACAAGTATTTTTGGGGGGATACCCCACATGTTATTAGTGAAACAGGCGGGT HS_haplotype2 TTTGGCACCACAAGTATTTTTGGGGGGAAACCCCACATGTTATTAGTGAAACAGGTGGGT **************************** ************************** **** HS_haplotype1 TTCATAAGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCGGGAGGTTCAAAA HS_assemblymutate_np1212 TTCATAAGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCGGGAGGTTCAAAA HS_haplotype2 TTCATACGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCAGGAGGTTCAAAA ****** **************************************** ************ HS_haplotype1 ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCAAATGCCTGGGA HS_assemblymutate_np1212 ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCAAATGCCTGGGA HS_haplotype2 ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCGAATGCCTGGGA ************************************************ *********** HS_haplotype1 TTACTTAACTTGTACTCAATGGTTATGGAGGCTGTGTGAGTAGCGCCCAAAACTCGACAG HS_assemblymutate_np1212 TTACTTAACTTGTCCTCAATGGTTATGGAGGCTGTGTGAGTAGCGGGCAAAACTCGACAG HS_haplotype2 TTACTTAACTTGTCCTCAATGGTTATGGAGGCTGTGTGAGTAGCGGGCAAAACTCGACAG ************* ******************************* ************* HS_haplotype1 AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC HS_assemblymutate_np1212 AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC HS_haplotype2 AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC ************************************************************ HS_haplotype1 TGGGAATTGCAGGAGATTTATATTGTGATCTGCCTGAATCCCCAAGAGCACAGATATGAC HS_assemblymutate_np1212 TGGGAATTGCAGGAGATTTATATTGTGATCTGCCTGAATCCCCAAGAGCACAGATATGAC HS_haplotype2 TGGGAATTGCAGGAGATTTATATTGTGATCTGCCTGAATCCCCAAGAGCACAGATATGAC ************************************************************ HS_haplotype1 CCTTAAGACTCCATCGCTTCTATTCGCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT HS_assemblymutate_np1212 CCTTAAGACTCCATCGCTTCTATTCGCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT HS_haplotype2 CCTTAAGACTCCATCGCTTCTATTCCCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT ************************* ********************************** HS_haplotype1 GGCTAACCCCTGTATGCCAGTTTTTTTGTGAGCCCCGAACTGTGTACCCAGTTCTCCCGC HS_assemblymutate_np1212 GGCTAACCCCTGTATGCCAGTTTTTTTGTGAGCCCCGAACTGTGTACCCAGTTCTCCCGC HS_haplotype2 GGCTAACCCCTGTATGCCAGTTTTTTTGTGAACCCCGAACTGTGTACGCAGTTCTCCCGC ******************************* *************** ************ HS_haplotype1 CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAGGCTGGGATGGTT HS_assemblymutate_np1212 CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAAGCTGGGATGGTT HS_haplotype2 CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAAGCTGGGATGGTT *********************************************** ************ HS_haplotype1 CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC HS_assemblymutate_np1212 CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC HS_haplotype2 CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC ************************************************************ HS_haplotype1 ATTCAGCCTTGTGAATAAATGGCACGCCTCGCCACTCCATAATTTTTTCATCCCTATTTA HS_assemblymutate_np1212 AATCGGCCTTGTGAATAAATGGCACGCCTCGGCACTCCATAATATTTTCATCCCTATTTA HS_haplotype2 AATCGGCCTTGTGAATAAATGGCACGCCTCGGCACTCCATAATATTTTCATCCCTATTTA * ** ************************** *********** **************** HS_haplotype1 AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGAGTGGAGGGACCACAGGCG HS_assemblymutate_np1212 AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGAGTGGAGGGACCACAGGCG HS_haplotype2 AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGAGTGGAGGGACCACAGGCG ************************************************************ HS_haplotype1 TGAGGGAGGATAGACCAGTAGAGTGAAGGCAGGGTGCAGCTAGCAGCCTCGATATTTATG HS_assemblymutate_np1212 TGAGGGAGGATAGACCAGTAGAGTGAAGGCAGGGTGCAGCTAGCAGCCTCGATATTTATG HS_haplotype2 TGAGGGAGGATAGACCAGTAGAGTGAAGGCAGGCTGCAGCTAGCAGCCTCGATATTTATG ********************************* ************************** HS_haplotype1 AATCAGTTGGGTAGAACCCAAATGTTGAAGGTGGTGGTTTGGTGCGTGGGGGGGGACAGA HS_assemblymutate_np1212 AATCAGTTGGGTAGAACCCAAATGTTGAAGGTGGTGGTTTGGTGCGTGGGGGGGGACAGA HS_haplotype2 AATCAGTTGGGTAGAACCCAAATGTTGAAAGTGGTGGTTTGGTGCGTGGGAGGGGACAGA ***************************** ******************** ********* HS_haplotype1 ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAACAGTATCAGAGTCCCAG HS_assemblymutate_np1212 ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAAAAGTAGCAGAGTCCCAG HS_haplotype2 ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAAAAGTAGCAGAGTCCCAG ******************************************* **** *********** HS_haplotype1 GCCAGCTGGCCACCATTCGCCCCTTAGGAGGCAGAGGCAGTGAAGTCACATGATTCTGTC HS_assemblymutate_np1212 GCCAGCTGGCCACCATCCGCCCCTTAGGAGGCAGAGGCAGCGAAGTCACATGATTCTGTC HS_haplotype2 GCCAGCTGGCCACCATCCGCCCCTTAGGAGGCAGAGGCAGCGAAGTCACATGGTTCTGTC **************** *********************** *********** ******* HS_haplotype1 TTATTTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT HS_assemblymutate_np1212 TTATTTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT HS_haplotype2 TTAATTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT *** ******************************************************** HS_haplotype1 TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGATGCCCCGCCCAGCTC HS_assemblymutate_np1212 TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGATGCCCCGCCCAGCTC HS_haplotype2 TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGACGCCCCGCCCAGCTC ********************************************* ************** HS_haplotype1 TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA HS_assemblymutate_np1212 TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA HS_haplotype2 TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA ************************************************************ HS_haplotype1 CTAAATTCTTCCCCTCATTGATCAGACAATATTAACACAATGCTGGTTCATTCAAATGGC HS_assemblymutate_np1212 CTAAATTCTTCCCCTCATTGATCACACAATATTAACACAATACTGGTTCATTCAAATGGC HS_haplotype2 CTAAATTCTTCCCCTCATTGATCACACAATATTAACACAATACTGGTTCATTCAAATGGC ************************ **************** ****************** HS_haplotype1 AGGAGGGAAGGACAAAGTATGTTCCCTGGCATGCAAAATACAAAATCAAGCAACATAGTA HS_assemblymutate_np1212 AGGAGGGAAGGACAAAGTATGTTCCCTGGCATGCAAAATACAAAATCAAGCAATATAGTA HS_haplotype2 AGGAGGGAAGGACAAAGTATGTTCCCTGGCATGCAAAATACAAAATCAAGCAATATAGTA ***************************************************** ****** HS_haplotype1 AATTAGCCAAGCACATCCATTTTATTGGTTTGTAGCTATGTATCCTCACATGAGTCTGGC HS_assemblymutate_np1212 AATTAGCCAAGCACATCCATTTTATTGGTTTGTAGCTATGTATCCTCACATGAGTCTGGC HS_haplotype2 AATTAGCCAGGCAGATCCATTTTATTGGTTTGTAGCTATGGATCCTCACATGAGTCTGGC ********* *** ************************** ******************* HS_haplotype1 TCGCAGTGAGCATTCATTAAAACCTGGTGGCGTGCTGTCAGAACTGGCCCTGCCTTAGCA HS_assemblymutate_np1212 TCGCAGTGAGCATTCATTAAAACCTGGTGGCGTGCTGTCAGAACTGGCCCTGCCTTAGCA HS_haplotype2 TCGCAGTGAGCATTCATTAAAACCTGGTGGCATGCTGTCAGAACTGGCCCTGCCTTAGAA ******************************* ************************** * HS_haplotype1 CAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT HS_assemblymutate_np1212 CAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT HS_haplotype2 AAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT *********************************************************** HS_haplotype1 CACTAGCCTACAGTGCTGAGGTGTAGTCTTACTTTGTTTGATTGTAGTCGGAGCATTACA HS_assemblymutate_np1212 CTCTAGCCTACAGTGCTGAGGTGTAGTCTTACTTTGTTTGATTGTAGTCGGAGCATTACA HS_haplotype2 CTCTAGCCTACAGTGCTGAGGTGTAGTCATACTTTGTATGATTGTAGTCGGAGCATTACA * ************************** ******** ********************** HS_haplotype1 ACACAGACGAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC HS_assemblymutate_np1212 ACACAGACTAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC HS_haplotype2 ACACAGACTAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC ******** *************************************************** HS_haplotype1 ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG HS_assemblymutate_np1212 ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG HS_haplotype2 ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG ************************************************************ HS_haplotype1 AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGCCACTCTGAGGTCACACTGAGGCTTGT HS_assemblymutate_np1212 AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGCCACTCTGAGGTCACACTGAGGCTTGT HS_haplotype2 AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGGCACTCTGAGGTCACACTGAGGCTTGT ********************************* ************************** HS_haplotype1 CCCTGGCCACTGAAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT HS_assemblymutate_np1212 CCCTGGCCACTGAAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT HS_haplotype2 CCCTGGCCACTGAAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT ************************************************************ HS_haplotype1 TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCTTGCCATAGAAA HS_assemblymutate_np1212 TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCATGCCATAGAAA HS_haplotype2 TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCATGCCATAGAAA ************************************************ *********** HS_haplotype1 CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC HS_assemblymutate_np1212 CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC HS_haplotype2 CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC ************************************************************ HS_haplotype1 GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACATAGCACT HS_assemblymutate_np1212 GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACAGAGGACT HS_haplotype2 GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACAGAGGACT ***************************************************** ** *** HS_haplotype1 GAGCGGTAATTTCACAGGGTGCTGGGGGATGCCATCTGTAAAGAACAGATGAGCAAACAC HS_assemblymutate_np1212 GAGCGGTATTTTCACAGGGTGCTGGGGGATGCCATCTGTAAATAACAGATGAGCAAACAC HS_haplotype2 GAGCGGTATTTTCACAGGGTGCTGGGGGATGCCATCTGTAAATAACAGATGAGCAAACAC ******** ********************************* ***************** HS_haplotype1 ACATCTGACAGGTAAGTGGCTCAAGCAGAGGTTTCACTGCGACAGACTGCGCTCACTTGT HS_assemblymutate_np1212 ACATCTGACAGGTACGTGGCTCAAGCAGAGGTTTCACTGCGACAGACTGCGCTCACTTGT HS_haplotype2 ACATCTGACAGGTACGTGGCTCAAGCAGAGGTTTCACTGCGACAGACTGCGCTCACTTGT ************** ********************************************* HS_haplotype1 TACAGGCTCAAAAATAAGAAGTCTCTCTCTGCTGATTTGATCTAAATGCTCTCTAGTCTA HS_assemblymutate_np1212 TACAGGCTCAAAAATAAGAAGTCTCTCTATGCTGATTTGATCTAAATGCTCTCTAGTCTA HS_haplotype2 TACAGGCTCAAAAATAAGAAGTCTCTCTATGCTGATTTGATCTAAATGCTCTCTAGCCTA **************************** *************************** *** HS_haplotype1 ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACTAATGTGCTCGGCCCCC HS_assemblymutate_np1212 ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACTAATGTGCTCGGCCCCC HS_haplotype2 ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACAAATGTGCTCGGCCCCC ******************************************* **************** HS_haplotype1 AGGAGCGGAGCAAAAGGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT HS_assemblymutate_np1212 AGGAGCGGAGCAAAAGGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT HS_haplotype2 AGGAGCGAAGCAAAAGGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT ******* **************************************************** HS_haplotype1 GTGGGACTTCTCACCACCATCCCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT HS_assemblymutate_np1212 GTGGGACTTCTCACCACCATACCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT HS_haplotype2 GTGGGACTTCTCACCACCATACCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT ******************** *************************************** HS_haplotype1 TCTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTC HS_assemblymutate_np1212 ACTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTC HS_haplotype2 ACTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTC *********************************************************** HS_haplotype1 TACCCACAGCTACCTCATGCTGTCAGTATATATGGGGTGAAACCGAAGGAAGAATCGGGA HS_assemblymutate_np1212 TACCCACAGCTACCTCATGCTGTCAGTATATATGGGGTGAAACCGAAGGAAGAATCGGGA HS_haplotype2 TACCCACAGCTACCTCATGCTGTCAGTATATATGGGGTGAAACCGAAGGAAGAATCGGGA ************************************************************ HS_haplotype1 GCTCTTGGACCATCCGCCTCATCTGATCCAGCCTCTCAGGGACTGGCAGTGGCTCAGTGT HS_assemblymutate_np1212 GCTCTTGGGCCATCCGCCTCATCTGATCCAGCCTCTCAGGGACTGGCAGTGGCTCAGTGT HS_haplotype2 GCTCTTGGGCCATCCGCCTCATCTGATCCAGCCTCTCAGGGACTGGCAGTGGCTCAGTGT ******** *************************************************** HS_haplotype1 TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG HS_assemblymutate_np1212 TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG HS_haplotype2 TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG ************************************************************ HS_haplotype1 TCCCTTGGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTTGTGTGCATTCC HS_assemblymutate_np1212 TCCCTTAGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTTGTGTGCATTCC HS_haplotype2 TCCCTTAGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTCGTGTGCATTCC ****** ***************************************** *********** HS_haplotype1 AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGAGTGGG HS_assemblymutate_np1212 AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGAGTGGG HS_haplotype2 AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGTGTGGG ****************************************************** ***** HS_haplotype1 CGAAATTTGGTGTGGCCCCCATGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG HS_assemblymutate_np1212 CGAAATTTGGTGTGGCCCCCATGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG HS_haplotype2 CGAAATTTGGTGTGGCCCCCATGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG ************************************************************ HS_haplotype1 TCCTTCAGCTCCTGATGAGGTTTGACCAAACACTAGCTAACTAAATTAATGTAGAAAGCC HS_assemblymutate_np1212 TCCTTCAGCTCCTGGTGAGGTTTGACCAAACACTAGCAAACTATATTAATGTAGAAAGCC HS_haplotype2 TCCTTCAGCTCCTGGTGAGGTTTGACCAAACACTAGCAAACTATATTAATGTAGAAAGCC ************** ********************** ***** **************** HS_haplotype1 TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATAAAATAAACTATGAGATGTC HS_assemblymutate_np1212 TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATACAATAAACTATGAGATGTC HS_haplotype2 TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATACAATAAACTATGAGATGTC ***************************************** ****************** HS_haplotype1 GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC HS_assemblymutate_np1212 GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC HS_haplotype2 GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC ************************************************************ HS_haplotype1 TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA HS_assemblymutate_np1212 TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA HS_haplotype2 TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA ************************************************************ HS_haplotype1 ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA HS_assemblymutate_np1212 ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA HS_haplotype2 ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA ************************************************************ HS_haplotype1 GGGGTAAATAGGGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA HS_assemblymutate_np1212 GGGGTAAATAGGGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA HS_haplotype2 GGGGTAAATAGCGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA *********** ************************************************ HS_haplotype1 ATTTTCCCTGGTACAGTATTGGTGAGCCTGACCCTCCGCCTGGGTTCCCCAGACCCTGTC HS_assemblymutate_np1212 ATTTTCCCTGGTACAGTATTGGTGAGCCTGACCCTCCGCCTGGGTTCCCCAGACCCTGTC HS_haplotype2 ATTTTCCCTAGTACAGTATTGGTGAGCCTGACCCTCCGCCTGGGTTCCCCAGACCCTGTC ********* ************************************************** HS_haplotype1 TCTGAGACCAGGTTCTATCAAAATCCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT HS_assemblymutate_np1212 TCTGAGACCAGGTTCTATCAAAATCCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT HS_haplotype2 TCAGAGACCAGGTTCTACCAAAATCCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT ** ************** ****************************************** HS_haplotype1 AAATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA HS_assemblymutate_np1212 AAATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA HS_haplotype2 ACATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA * ********************************************************** HS_haplotype1 ATCTTCGCCTCAAAACGTGGGAGGGTAATATCAACATAGGCAAGAGCTCACTGGCCTCAG HS_assemblymutate_np1212 ATCTTCGCCTCAAAACGTGGGAGGGTAACATCAACATAGGCAAGAGCTCACTGGCCTCAG HS_haplotype2 ATCTTGGCCTCAAAACGTGGGAGGGTAACATCAACATAGGCAAGAGCTCACTGGCCTCAG ***** ********************** ******************************* HS_haplotype1 GCTGGGTATACTATGTGAGGCTCGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA HS_assemblymutate_np1212 GCTGGGTATACTATGTGAGGCTCGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA HS_haplotype2 GCTGGGTAAACTATGTGAGGCTTGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA ******** ************* ************************************* HS_haplotype1 CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG HS_assemblymutate_np1212 CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG HS_haplotype2 CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG ************************************************************ HS_haplotype1 GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTGAATAAATGTCTGTGCATACTT HS_assemblymutate_np1212 GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTTAATAAATGTCTGTGCATACTT HS_haplotype2 GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTTAATAAATGTCTGTGCATACTT ************************************** ********************* HS_haplotype1 CACCCACTCCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG HS_assemblymutate_np1212 CACCCACTGCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG HS_haplotype2 CACCCACTGCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG ******** *************************************************** HS_haplotype1 CCCTAAAGGCGTGAGATTTAACTCAGGCCCCAAATATGACGTGTCAAATTTATGGTATCT HS_assemblymutate_np1212 CCCTAAAGGCGTGAGATTTAACTCAGGCCCCAAATATGACGTGTCAAATTTATGGTATCT HS_haplotype2 CCCTAAAGGCGTGAGATTTAACACAGGCCCCATATATGACGTGTCAAATTTATGGTATCT ********************** ********* *************************** HS_haplotype1 AGGGGACATCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG HS_assemblymutate_np1212 AGGGGACATCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG HS_haplotype2 AGGGGACGTCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG ******* **************************************************** HS_haplotype1 AGACTTGGACAGGGAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGTA HS_assemblymutate_np1212 AGACTTGGACAGGGAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGTA HS_haplotype2 AGACTTGGACAGGAAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGTA ************* ********************************************** HS_haplotype1 ATCCAAGCAGTAAACTGGGGGTTGGCTTAAGACTGCTGGGCACCCTCATGCTAATTACAA HS_assemblymutate_np1212 ATCCAAGCAGTAAACTGGGGGTTGGCTTAAGACTGCTGGGCACCCTCATGCTAAGTACAA HS_haplotype2 ATCCAAGCAGTAAACTGGGGGTTGGCTTAAGACTGCTGGGCACCCTCATGCTAAGTACAA ****************************************************** ***** HS_haplotype1 CCCGCGTGTGGCTGGGCTGCTCCAAAACCACCCCTCGCTTATCCAGGAATTGGACTCAGT HS_assemblymutate_np1212 CCCGCGAGTGGCTGGGCTGCTCCAAAACCGCGCCTCGCTTATCCGGGAATTGGACTCAGT HS_haplotype2 CCCGCGAGTGGCTGGGCTGCTCCAAAACCGCGCCTCGCTTATCCGGGAATTGGACTCAGT ****** ********************** * ************ *************** HS_haplotype1 GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA HS_assemblymutate_np1212 GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA HS_haplotype2 GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA ************************************************************ HS_haplotype1 CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACTGA HS_assemblymutate_np1212 CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACGGA HS_haplotype2 CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACGGA ********************************************************* ** HS_haplotype1 GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTTGGAGATAAAAGAGA HS_assemblymutate_np1212 GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTAGGAGATAAAAGAGA HS_haplotype2 GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTAGGAGATAAAAGAGA ********************************************* ************** HS_haplotype1 GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG HS_assemblymutate_np1212 GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG HS_haplotype2 GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG ************************************************************ HS_haplotype1 CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA HS_assemblymutate_np1212 CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA HS_haplotype2 CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA ************************************************************ HS_haplotype1 ATAAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATACTACTAC HS_assemblymutate_np1212 ATAAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATACTACTAC HS_haplotype2 ATCAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATGCTACTAC ** ************************************************* ******* HS_haplotype1 ATGTGATCAGAATTGTTGGAAGGTGCGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC HS_assemblymutate_np1212 ATGTGATCAGAATTGTTGGAAGGTGAGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC HS_haplotype2 ATGTGATCAGAAATGTTGGAAGGTGAGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC ************ ************ ********************************** HS_haplotype1 ACCAAGTGCTTTTCCTCTCTCCCTGCTCGGGCCTGTGTCTCACCCAAAAACCTTACTCAA HS_assemblymutate_np1212 ACCAAGTGCTTTTCCTCTCTCCCTGCCCGGGCCTGTGTCTCACCCAAAAACCTTACTGAA HS_haplotype2 ACCAAGTGCTTTTCCTCTCTCCCTGCCCGGGCCTGTGTCTCACCCAAAAACCTTACTGAA ************************** ****************************** ** HS_haplotype1 AATATTTTTTTTTCAGTTTCCACTGGGCGCAGCCACTCCTGGGCAAAGCATACTGAGAGC HS_assemblymutate_np1212 AATATTTTTTTTTCAGTTTCCACTGGGCGCAGCCACTCCTGGGCAAAGCATACTGAGAGC HS_haplotype2 AATATTTTTTTTTCAGTTTCCACTGGGCGCAGCCACTCCTGGGCAAAGCATACTGAGAGC ************************************************************ HS_haplotype1 AGCATCCATAATCTACGCTGGGCACTGTAACCCTTGAGGACCATCTCTGGCCTGAGTGCA HS_assemblymutate_np1212 AGCATCCATAATCTACGCTGGGCACTGTAACCCTTGAGGACCATCTCTGGCCTGAGTGCA HS_haplotype2 AGCATCCATAATCTACGCTGAGCTCTGTAACCCTTGAGGACCATCTCTGGCCTGAGTGCA ******************** ** ************************************ HS_haplotype1 ATAAAGTCTAAGTAGTAACACTCCTCCTCAGTATCCAGGAGAAAGGTTTAATGCTCATCA HS_assemblymutate_np1212 ATAAAGTCTAAGTAGTAACACTCCTCCTCAGTATCCAGGAGAAAGGTTTAATGCTCATCA HS_haplotype2 ATAAAGTCTAAGTAGTAACACTCCTCCTCAGTATCCAGGAGAAAGGTTTAATGCTCATCA ************************************************************ HS_haplotype1 GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT HS_assemblymutate_np1212 GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT HS_haplotype2 GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT ************************************************************ HS_haplotype1 TATTATCCCGCTCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA HS_assemblymutate_np1212 TATTATCCCGCCCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA HS_haplotype2 TATTATCCCGCCCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA *********** ************************************************ HS_haplotype1 AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT HS_assemblymutate_np1212 AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT HS_haplotype2 AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT ************************************************************ HS_haplotype1 GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT HS_assemblymutate_np1212 GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT HS_haplotype2 GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT ************************************************************ HS_haplotype1 ATAAAAAACTGGATATCTCAGCTCACCTGGTTGCATAGTAGAATGGGGGACGAGATACTT HS_assemblymutate_np1212 ATAAAAAACTGGATATCTCAGCTCACCTGGTTTCATAGTAGAATGGGGGACGAGATACTT HS_haplotype2 ATAAAAAACTGGATATCTCAGCTCACCTGGTTTCATAGTAGAATGGGGGACGAGATACTT ******************************** *************************** HS_haplotype1 TTTTTTCTATACTCCTGCCCTTCATTAAGTAGATTTGCCTCCCATCTTGGTCATCTGAAG HS_assemblymutate_np1212 TTTTTTCTATACTCCTGCCCTTCATTAAGTAGTTTTGCCTCCCATCTTGGTCATCTGAAG HS_haplotype2 TTTTTTCTATACTCCTGCCCTTCATTAAGTAGTTTTGCCTCCCATCTTGGTCATCTGAAG ******************************** *************************** HS_haplotype1 GAAGCTCATCTGTGGCAAAATAGGCAGAGTTCCTTGGATTTGTGAGAAGTAACAGCCTCA HS_assemblymutate_np1212 GAAGCTCATCTGTGGCAAAATAGGCAGAGTTCCTTGGATTTGTGAGAAGTAACAGCCTCA HS_haplotype2 GAAGCTCATCTGAGGCAAAATAGGCAGAGGTCCTTGGATTTGTGAGAAGTAACAGCGTCA ************ **************** ************************** *** HS_haplotype1 CAACCTTAAGATGGAGGAAAAAATTGCTCAGAGATGATATATTTCTTTTGTTTAACTCAT HS_assemblymutate_np1212 CAACCTTAAGATGGAGGAAAAAATTGCTCAGAGATGATATATTTCTTTTGTTTAACTCAT HS_haplotype2 CAACCTTAAGATGGAGGAAAAAATTGCTCAGAGATGATATATTTCTTTTGTCTAACTCAT *************************************************** ******** HS_haplotype1 CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACATAGCCCTTTTCTA HS_assemblymutate_np1212 CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACATAGCCCTTTTCTA HS_haplotype2 CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACCTAGCCCTTTTCTA ********************************************** ************* HS_haplotype1 TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC HS_assemblymutate_np1212 TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC HS_haplotype2 TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC ************************************************************ HS_haplotype1 GTTGTTTCTCCTGAAAATCATCCCTTGAATTACACACCCCTAGCTAATCCTTTCACGAAA HS_assemblymutate_np1212 GTTGTTTCTCCTGAAAATCATCCCTTGAATTACACACCCCTAGCTAATCCTTTCACGAAA HS_haplotype2 GTTGTTTCTCCTGAAAATCATGCCTTGAATTACACACCCCTAGCTAATCCTTTCACGAAA ********************* ************************************** HS_haplotype1 CTATGAATGATAGTAGCTTTTTTTGAGCAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC HS_assemblymutate_np1212 CTATGAATGATAGTAGCTTTTTTTGAGCAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC HS_haplotype2 CTATGAATGATAGTAGCTTTTTTTGAGCAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC ************************************************************ HS_haplotype1 TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATCCAGCAATGACTTTTATGTAATG HS_assemblymutate_np1212 TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATCCAGCAATGACTTTTATGTAATG HS_haplotype2 TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATTGAGCAATGTCTTTTATGTAATG ************************************* ******* ************* HS_haplotype1 TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC HS_assemblymutate_np1212 TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC HS_haplotype2 TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC ************************************************************ HS_haplotype1 CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT HS_assemblymutate_np1212 CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT HS_haplotype2 CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT ************************************************************ HS_haplotype1 CCTCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA HS_assemblymutate_np1212 CCCCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA HS_haplotype2 CCCCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA ** ********************************************************* HS_haplotype1 TGAATTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACACCTGCCTCTGCAG HS_assemblymutate_np1212 TGACTTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACACCTCCCTCTGCAG HS_haplotype2 TGACTTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACACCTCCCTCTGCAG *** ********************************************** ********* HS_haplotype1 GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATGGAGCCTGTATTGGAGAATAATT HS_assemblymutate_np1212 GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATGGAGCCTGTATTGGAGAATAATT HS_haplotype2 GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATTGAGCCTGTATTAGAGAATAATT ************************************* *********** ********** HS_haplotype1 TGTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG HS_assemblymutate_np1212 TGTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG HS_haplotype2 TTTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG * ********************************************************** HS_haplotype1 GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC HS_assemblymutate_np1212 GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC HS_haplotype2 GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC ************************************************************ HS_haplotype1 GGTGGGGCACCTCTGGATTGATCCAAATGAATATTTATATTTGCATCAAATCTGGAAATA HS_assemblymutate_np1212 GGTGGGGCACCTCTGGATTGATCCAAATGAATATTTATATTTGCATCAAATCTGGAAATA HS_haplotype2 GGTGGGGCACCTCTAGATTGATCCAAATGAATATTTATATTTGCATCAAATCTGGAACTA ************** ****************************************** ** HS_haplotype1 CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA HS_assemblymutate_np1212 CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA HS_haplotype2 CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA ************************************************************ HS_haplotype1 GTGAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT HS_assemblymutate_np1212 GTCAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT HS_haplotype2 GTCAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT ** ********************************************************* HS_haplotype1 ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG HS_assemblymutate_np1212 ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG HS_haplotype2 ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG ************************************************************ HS_haplotype1 ATCCTTCCATGACACTGCTTATGTTGTGAGACGGCTCACTAAGTATGAAGAATTAGGTGA HS_assemblymutate_np1212 ATCCTTCCATGACACTGCTTATGTTGGGAGACGGCTCACTAAGTATGAAGAATTAGGTGA HS_haplotype2 ATCCTTCCATGACACTGCTTATGTTGGGAGACGGCTCACTAAGTATGAAGAATTAGGTGA ************************** ********************************* HS_haplotype1 CGAAGATGTGATTAGTTTTATTTAATTGCTCGACAGATAAGGACCGCAAACATGGTTTCT HS_assemblymutate_np1212 CAAAGATTTGATTAGTTTTATTTAATTGCTCGACAGATACGGACCGCAAACATGGTTTCT HS_haplotype2 CAAAGATTTGATTAGTTTTATTTAATTGCTCGACAGATACGGACCGCAAACATGGTTTCT * ***** ******************************* ******************** HS_haplotype1 TTTTTTACAGGCTCCTGTGTTTCGTTTACAGAAGCTTATCTACCTTCAAGTAAAAGGCTC HS_assemblymutate_np1212 TTTTTTACAGGCTCCTGTGTTTCTTTTACAGAAGCTTATCTACCCTCAAGTAAAAGGCTC HS_haplotype2 TTTTTTACAGGCTCCTGTGTTTCTTTTACAGAAGCTTATCTACCCTCAAGTAAAAGGCTC *********************** ******************** *************** HS_haplotype1 ACGCCTGGCTTAGTAGAGAAAAATTGCCGGGCGCGCGCCATGGACGCACGGTCAGGCTGG HS_assemblymutate_np1212 ACGCCTGGCTTAGTAGAGAAAAATTGCCGGGCGCGCGCCATGGACGCACGGTCAGGCTGG HS_haplotype2 ACGCCTGGCTTAGTAGAGAAAAATTGCCGGGCGCGCGCCATGGACGCACGGTCAGGCTGG ************************************************************ HS_haplotype1 GCGCGGTTCATGAGAGTCTTCAAGGCAACTTTGACTGTGATCCAAATACTTAACTTCGGA HS_assemblymutate_np1212 GCGCGGTTCATGAGAGTCTTCAAGGCAACTCTGACTGTGATCCAAATACTTAACTTCGGA HS_haplotype2 GCGCGGTTCATGAGAGTCTTCAAGGCAACTCTGACTGTGATCCAAATACTTAACTTCGGA ****************************** ***************************** HS_haplotype1 CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG HS_assemblymutate_np1212 CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG HS_haplotype2 CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG ************************************************************ HS_haplotype1 CTATCTGCTTTGCCTGCTAATTTTTTCTGAGCTGTTTATGTATTTCCTGCAGAGCATGCT HS_assemblymutate_np1212 CTATCTGCTTTGCCTTCTAATTTTTTCTGAACTGTTTATGTATTTCCTGCAGAGCATGCT HS_haplotype2 CTATCTGCTTTGCCTTCTAATTTTTTCTGAACTGTTTATGTATTTCCTGCAGAGCATGCT *************** ************** ***************************** HS_haplotype1 CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGACATCTGGGTCTCAAC HS_assemblymutate_np1212 CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGTCATCTGGGTCTCAAC HS_haplotype2 CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGTCATCTGGGTCTCAAC ******************************************** *************** HS_haplotype1 CTTCAACTGACCTCCAACTTATGGGGGCTTCCGGCTGGAAAAACTAGATCCAGCTAGGGC HS_assemblymutate_np1212 CTTCAACTGACCTCCAACTTATGGGGGCTTCCGGCTGGAAAAACTAGATCCAGCTAGGGC HS_haplotype2 CTTCAACTGACCTCCAACTTATGGGGGCTTCCGGCTGGAAAAACTAGATCCAGCTAGGGC ************************************************************ HS_haplotype1 TGGATTACACAAAGACTTTGCAGTCCCCAACACCATCTCCCTGAGGCCCTTTTACTGGGA HS_assemblymutate_np1212 TGGATTACACAAAGACTTTCCAGTCCCCAACTCCATCTCCCTGAGGCCCTTTTACTGGGA HS_haplotype2 TGGATTACACAAAGACTTTCCAGTCCCCAACTCCATCTCCCTGAGGCCCTTTTACTGGGA ******************* *********** **************************** HS_haplotype1 AAAAGTCACCCCCTCTCCCAAGGGTTCCTTTAGTACCCGGGCGGAGGGTTTAGGTGACGG HS_assemblymutate_np1212 AAAAGTCACCCCCTCTCCCAAGGGTTCCCCTAGTACCCGGGCGGAGGGTTTAGGTGACGG HS_haplotype2 AAAAGTCACCCCCTCTCCCAAGGGTTCCCCTAGTACCCGGGCGGAGGGTTTAGGTGACGG **************************** ****************************** HS_haplotype1 ATTGTATGGTACACTGCTTTAGTAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA HS_assemblymutate_np1212 ATTGTATGGCACACTGCTTTAGTAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA HS_haplotype2 ATTGTATGGCACACTGCCTTAGAAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA ********* ******* **** ************************************* HS_haplotype1 CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG HS_assemblymutate_np1212 CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG HS_haplotype2 CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG ************************************************************ HS_haplotype1 ACGGGCACTGGAGTTGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC HS_assemblymutate_np1212 ACGGGCACTGGAGTGGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC HS_haplotype2 ACGGGCACTGGAGTGGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC ************** ********************************************* HS_haplotype1 TGGATAAAAAAGGTTGTTTGGAATCTTTTTCCAGCTTTTTGTGCAGTTTCTCCATTCTCA HS_assemblymutate_np1212 TGGATAAAAAAGGTTGTTTGGAATCTTTTTCCAGCTTTTTGTGCAGTTTCTCCATTCTCA HS_haplotype2 TGGATAAAAAAGGTTGTTTGGAATCTTTTTCCAGCTTTTTGTGCAGTTTCTCCATTCTCA ************************************************************ HS_haplotype1 TTGCATGATGTTTCAAGCAAACTTGGGTCTATGTGCCTGCAAGGAAGGAAATAAAATTTG HS_assemblymutate_np1212 TTGCATGATGTTTCAAGCATACTTGGGTCTATGTGCCTGCAAGGATGAAAATAAAAATTG HS_haplotype2 TTGCATGATGTTTCAAGCATACTTGGGTCTATGTGCCTGCAAGGATGAAAATAAAAATTG ******************* ************************* * ******** *** HS_haplotype1 AGATAAGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG HS_assemblymutate_np1212 AGATACGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG HS_haplotype2 AGATACGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG ***** ****************************************************** HS_haplotype1 TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG HS_assemblymutate_np1212 TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG HS_haplotype2 TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG ************************************************************ HS_haplotype1 ACGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT HS_assemblymutate_np1212 ATGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT HS_haplotype2 ATGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT * ********************************************************** HS_haplotype1 CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA HS_assemblymutate_np1212 CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA HS_haplotype2 CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA ************************************************************ HS_haplotype1 AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA HS_assemblymutate_np1212 AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA HS_haplotype2 AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA ************************************************************ HS_haplotype1 GTAGCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG HS_assemblymutate_np1212 GTATCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG HS_haplotype2 GTATCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG *** ******************************************************** HS_haplotype1 ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGACATGGAGGCCTCGGTCAAAGAAGC HS_assemblymutate_np1212 ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGAGATGGAGGCCTCGGTCAAACAAGC HS_haplotype2 ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGAGATGGAGGCCTCGGTCAAACAAGC ************************************ ****************** **** HS_haplotype1 ATTTTATGCAACTAAATGGTTGTGCTGTGAGCCAGAAGCTATGTGCCACCCAAATAAAAC HS_assemblymutate_np1212 ATTTTATGCGACTAAATGGTTGTGCTGTGAGCCAGAAACTATGTGGCACCCAAATAAAAC HS_haplotype2 ATTTTATGCGACTAAATGGTTGTGCTGTGAGCCAGAAACTATGTGGCACCCAAATAAAAC ********* *************************** ******* ************** HS_haplotype1 GGAGCAAGGCCTCCAGCAGACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGCAATGT HS_assemblymutate_np1212 GGAGCAAGGCCTCAAGCAGACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGCAATGT HS_haplotype2 GGAGCAAGGCCTCAAGCAGACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGAAATGT ************* **************************************** ***** HS_haplotype1 GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCCCCAAATATGAG HS_assemblymutate_np1212 GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCCCCAAATATGAG HS_haplotype2 GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCTCCAAATATGAG ************************************************ *********** HS_haplotype1 GCATTTATTTCTCCTTCAAAATAAGTACTACCATCCTCCCTGGGCCTAAATCCCTTCTCC HS_assemblymutate_np1212 GCATTTATTTCTCCTTCAAAATAAGTACTACCATCCTCCCTGGGCCTAAATCCCTTCTCC HS_haplotype2 GCATTTATTTCGCCTTCAAGATAAGTACTACCATCCTCCCTGGGCCTAAATCCATTCTCC *********** ******* ********************************* ****** HS_haplotype1 ACAGAGGTCACCCGGGGTAGGATTGGCCAAAGGCTCGCGCCCGGGCGCACCGCGGTACTT HS_assemblymutate_np1212 ACAGAGGTCACCCGGGGTAGGATTGGCCAAAGGGTCGCGCCCGGGCGCACCGCGGTACTT HS_haplotype2 ACAGAGGTCACCCAGGGTAGGGTTGGCCAAAGGGTCGCGCCCGGGCGCACCGCGGTACTT ************* ******* *********** ************************** HS_haplotype1 AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATCGCTGGCCAACACCCAGTCAAG HS_assemblymutate_np1212 AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATTGCTGGCCAACACCCAGTCAAG HS_haplotype2 AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATTGCTGGCCAACACCCAGTCAAG ************************************** ********************* HS_haplotype1 TACAGTGAGTCTTGAATAGTAGACCAAATCGTGTACGGGAGTTGAAAAATGAAGATCCAG HS_assemblymutate_np1212 TGCAGTGAGTCTTGACTAGTAGACCAGATCGTGTACGTGAGTTGAAAAATGAAGATCCAG HS_haplotype2 TGCAGTGAGTCTTGACTAGTAGACCAGATCGTGTACGTGAGTTGAAAAATGAAGATCCAG * ************* ********** ********** ********************** HS_haplotype1 CCTTCCTCGTGAGGCAGGAGAGAACAAGGGACATATTATTATGTAACTGGAAGCTACTGG HS_assemblymutate_np1212 CCTTCTTCCTGAGGCAGGAGAGAACAAGGGACATATTATAATGCAACTGGAAGCTACTGG HS_haplotype2 CCTTCTTCCTGAGGCAGGAGAGAACAAGGGACATATTATAATGCAACTGGAAGCTACTGG ***** ** ****************************** *** **************** HS_haplotype1 GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATGATACCATTCCAG HS_assemblymutate_np1212 GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATCATACCATACCAG HS_haplotype2 GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATCATACCATACCAG *********************************************** ******* **** HS_haplotype1 ATACTTGCATTTCATTATTTATTTTTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG HS_assemblymutate_np1212 ATACTTGCATTTCATTATTTATTTCTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG HS_haplotype2 ATACTTGCATTTCATTATTTATTTCTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG ************************ *********************************** HS_haplotype1 CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAAACAG HS_assemblymutate_np1212 CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAATCAG HS_haplotype2 CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAATCAG ******************************************************** *** HS_haplotype1 GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT HS_assemblymutate_np1212 GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT HS_haplotype2 GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT ************************************************************ HS_haplotype1 TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA HS_assemblymutate_np1212 TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA HS_haplotype2 TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA ************************************************************ HS_haplotype1 ACAAAACGTTTTCCAATTCCTCTTCTCCCATTATGAGATGATGGGGTAAACTAGCTCCTT HS_assemblymutate_np1212 ACAAAACGTTTTCCAATGCCTCTTCTCACATTATGAGATGATGGGGTAAACTAGCTCCTT HS_haplotype2 ACAAAACGTTTTCCAATGCCTCTTCTCACATTATGAGATGATGGGGTAAACTAGCTCCTT ***************** ********* ******************************** HS_haplotype1 GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA HS_assemblymutate_np1212 GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA HS_haplotype2 GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA ************************************************************ HS_haplotype1 TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA HS_assemblymutate_np1212 TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA HS_haplotype2 TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA ************************************************************ HS_haplotype1 GGAATGGGAATAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGAATAACATTTAA HS_assemblymutate_np1212 GGAATGGGAAAAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGTATAGCATTTAA HS_haplotype2 GGAATGGGAAAAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGTATAGCATTTAA ********** ************************************* *** ******* HS_haplotype1 AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCATATTTGGTTAATT HS_assemblymutate_np1212 AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCAAATTTGGTTAATT HS_haplotype2 AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCAAATTTGGTTTATT *********************************************** ******** *** HS_haplotype1 AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG HS_assemblymutate_np1212 AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG HS_haplotype2 AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG ************************************************************ HS_haplotype1 TCTGTCTCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG HS_assemblymutate_np1212 TCTGTCTCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG HS_haplotype2 TCTGTCCCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG ****** ***************************************************** HS_haplotype1 TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAACACTCTGTTTTGAT HS_assemblymutate_np1212 TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAGCACTCTATTTTGAT HS_haplotype2 TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAGCACTCTATTTTGAT ********************************************* ****** ******* HS_haplotype1 TACATCAGAGGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT HS_assemblymutate_np1212 TACATCAGAGGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT HS_haplotype2 TACAACAGAGGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT **** ******************************************************* HS_haplotype1 GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT HS_assemblymutate_np1212 GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT HS_haplotype2 GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT ************************************************************ HS_haplotype1 CTGTGTTGCAGTGCATCTTATATGACTAGAATGCTAATTATCTATCGATCTACAGGAGAT HS_assemblymutate_np1212 CTGTGTTGCAGTGCATCTTATATGACTAGAATGCTAATTATCTATCGATCTACAGGAGAT HS_haplotype2 TTGTATTGCAGTGCATCTTAGATGACTTGAATGCTAATTATCTATCGATCTACAGGAGAT *** *************** ****** ******************************** HS_haplotype1 TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT HS_assemblymutate_np1212 TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT HS_haplotype2 TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT ************************************************************ HS_haplotype1 CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT HS_assemblymutate_np1212 CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT HS_haplotype2 CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT ************************************************************ HS_haplotype1 ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA HS_assemblymutate_np1212 ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA HS_haplotype2 ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA ************************************************************ HS_haplotype1 CAGACCGACTGACCTGTCTTGCTCTGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCAA HS_assemblymutate_np1212 CAGACCGACTGACCTGTCTTGCTCTGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCAA HS_haplotype2 CAGACCGACTGACCTGTCTTGCTCAGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCAA ************************ *********************************** HS_haplotype1 ATGTCCTTCTCACTTGATATATAAATACGGTTCAGTTTTACTGCAATGGTTGTGGCAGAA HS_assemblymutate_np1212 ATGTCCTTCTCACTTGATATATAAATACGGTTCAGTTTTACTGCAATGGTTGTGGCAGAA HS_haplotype2 ATGTCCTTCTCACTTGATATATAAATACGGTTCAGTTTTACTGCAATGGTTGTGGCAGAA ************************************************************ HS_haplotype1 GGTACAGCCTCACTGGAAGTATTGCTGGACCTAATTGAATACACGAGCTCAGAACTCACG HS_assemblymutate_np1212 GGTACAGCCTCACTGGAAGTATTACTGGACCTAATTGAATACACGAGCTCAGATCTCACG HS_haplotype2 GGTACAGCCTCACTGGAAGTATTACTGGACCTAATTGAATACACGAGCTCAGATCTCACG *********************** ***************************** ****** HS_haplotype1 CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG HS_assemblymutate_np1212 CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG HS_haplotype2 CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG ************************************************************ HS_haplotype1 GTGTGTTTGCAAGCTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGTGG HS_assemblymutate_np1212 GTGTGTTTGCAAGCTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGAGG HS_haplotype2 GTGTGTTTGCAAACTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGAGG ************ ******************************************** ** HS_haplotype1 TGCCTGGGGAGGAAATCAAATGGGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA HS_assemblymutate_np1212 TGCCTGGGGAGGAAATCAAATGGGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA HS_haplotype2 TGCCTGGGGAGGAAATCAAATGAGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA ********************** ************************************* HS_haplotype1 CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTTTTGTTCTTAC HS_assemblymutate_np1212 CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTTTTGTTCTTAC HS_haplotype2 CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTCTTGTTCTGAC ************************************************* ******* ** HS_haplotype1 ACCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTCTGATCAGTAGCTGACTTATTTTTGT HS_assemblymutate_np1212 ACCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTCTGATCAGTAGCTGACTTATTTTTGT HS_haplotype2 AGCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTGTGATCAGTAGCTGACTTATTTTTGT * ******************************** ************************* HS_haplotype1 TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCTGGCCATGA HS_assemblymutate_np1212 TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCTGGCCATGA HS_haplotype2 TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCCGGCCGTGA *************************************************** **** *** HS_haplotype1 CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT HS_assemblymutate_np1212 CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT HS_haplotype2 CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT ************************************************************ HS_haplotype1 CAACTACAGGTTACCATCAGTCCCTGGGCATAAAATGCAGACAGCAAGCACTCCCTATGT HS_assemblymutate_np1212 CAACTACAGGTTACCATCAGTCCCTGGGCATAAAATTCAGACAGCAAGCACTCCCTCTGT HS_haplotype2 CAACTACAGGTCACCATCAGACCCTGGGCATAAAATTCAGACAGCAAGCACTCCCTCTGT *********** ******** *************** ******************* *** HS_haplotype1 AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA HS_assemblymutate_np1212 AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA HS_haplotype2 AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA ************************************************************ HS_haplotype1 AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTGATGTTCAGTCTTCTA HS_assemblymutate_np1212 AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTTATGTTCAGTCTTCTC HS_haplotype2 AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTTATGTTCAGTCTTCTC ******************************************** ************** HS_haplotype1 CACCTCAATACCTGATTGAGACCACAGAGAAGTATGGGGGCTGTGGTAGCCGGCCTTGCA HS_assemblymutate_np1212 CACCTCAATACCTGATTGAGATCACAGAGAAGTATGGGGGCTGTGGTAGCCAGCCTTGAA HS_haplotype2 CACCTCAATACCTGATTGAGATCACAGAGAAGTATGGGGGCTGTGGTAGCCAGCCTTGAA ********************* ***************************** ****** * HS_haplotype1 AAAAAAACAAACTTATTTTAAAGTAGCAATCAAGGCCCTCTGCCTCTTTAAGCCATTCGG HS_assemblymutate_np1212 AAAAAAACAAACTTATTTTAAAGTAGCAATCAAGGCCCTCTGCCTCTTTAAGCCATTCGG HS_haplotype2 AAAAAAACAAACTTATTTTAAAGTAGCAAGCAAGGCCCTCTGCCTCTTTAAGCCATTCGG ***************************** ****************************** HS_haplotype1 GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG HS_assemblymutate_np1212 GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG HS_haplotype2 GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG ************************************************************ HS_haplotype1 CTGCCACCACCGCGCGTGACTGGGGGTGGGAGTGTAAACATGCGAGTAGACACCTGGATT HS_assemblymutate_np1212 CTGCCACCACCGCGCGTGACTGGGGGTGCGTGTGTAAACATGCGAGTAGACACCTGTATT HS_haplotype2 CTGCCACCACCGCGCGTGACTGGGGGTGCGTGTGTAAACATGCGAGTAGACACCTGTATT **************************** * ************************* *** HS_haplotype1 CTTGCTTCCCGGCTGTTCCTTCCTTGAAGTATTTTACAATTATTCAACAACCTGGTGGCA HS_assemblymutate_np1212 CTTGCTTCCCGGCTGTTCCTTCCTTGATGTATTTTACAATTATTCAACATCCTTCTGGCA HS_haplotype2 CTTGCTTCCCGGCTGTTCCTTCCTTGATGTATTTTACAATTATTCAACATCCTTCTGGCA *************************** ********************* *** ***** HS_haplotype1 TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATGCAGATGATC HS_assemblymutate_np1212 TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATGCAGATGATC HS_haplotype2 TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATTCAGATGATC ************************************************** ********* HS_haplotype1 ATGGTGCCCTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT HS_assemblymutate_np1212 ATGGTGCCCTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT HS_haplotype2 ATGGTGCACTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT ******* **************************************************** HS_haplotype1 CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC HS_assemblymutate_np1212 CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC HS_haplotype2 CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC ************************************************************ HS_haplotype1 ATCAACCCATTTGTAATATCGAGACCTGTAATTTCAGTTGTTACAGAAGTCTATGCAGAG HS_assemblymutate_np1212 ATCAACCCATTTGTAATATCGAGACCTGTAATTTCAGTTGTTACAGAAGTCTATGCAGAG HS_haplotype2 ATCAACCCATTTGTAATATCGAGACCTGTAATGTCAGTTGTTACAGAAGTCTATGCAGAG ******************************** *************************** HS_haplotype1 GATTCTACAAACCTATTTTTATTTAAATCCAACAAACGGGCGGGCTCAGGATTACTTCTC HS_assemblymutate_np1212 GATTCTACAAACCTATTTTTATTTAAATCCAACAAACGGGCGGGCTCAGGATTACTTCTC HS_haplotype2 GATTCTACAAACCTAATTTTATTTAAATCCAACAAACGGGCGGGCACAGGATTACTTCTC *************** ***************************** ************** HS_haplotype1 CCTCAAGGCCTCGGCACTCAAGGGATGGTATGGCTGGCGCCCTGCCTCCGGGCATAGGCT HS_assemblymutate_np1212 CCTCAAGGCCTCGGCACTCAAGGGATGGTATGGCTGGCGCCCTGCCTCCGGGCATAGGCT HS_haplotype2 CCTCAAGGCCTCGGTACTCAAGGGATGGTATGGCTGGCGCCCTGCCTCCGGGCATGGGCT ************** **************************************** **** HS_haplotype1 GAGTCACCTGTGTTTTCTATTTTACAAGTGAAATTTATAATGAGATAGTGGGTAGACCAC HS_assemblymutate_np1212 GAGTCACCTGTGTTTTCTATTTTACAAGTGAAATTTATAATGAGATAGTGGGTAGACCAC HS_haplotype2 GAGTCACCTGGGTTTTCTATTTTACAAGTGAAATTTATAATGAGAAAGTCGGTAGACCAC ********** ********************************** *** ********** HS_haplotype1 TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCCCCATGTTGCCAGACCCAGTTAC HS_assemblymutate_np1212 TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCGCCATGTTGCCAGACCCAGTTAC HS_haplotype2 TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCGCCATGTTGCCAGACCCAGTTAC ************************************* ********************** HS_haplotype1 AATAGCTGAGGTTAACAGCTAAGGGAGCGTTGGAGACGGAGAAACAGCACTGGAGAATGA HS_assemblymutate_np1212 AATAGCTGAGGTTAACAGCTAAGGGAGAGTTGGAGACTGAGAAACAGCACTGGAGAATGA HS_haplotype2 AATAGCTGAGGTTAACAGCTAAGGGAGAGTTGGAGACTGAGAAACAGCACTGGAGAATGA *************************** ********* ********************** HS_haplotype1 AGAATAATATAACAAATCTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG HS_assemblymutate_np1212 AGAATAATATAACAAATCTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG HS_haplotype2 AGAATAATATAACAAATCTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG ************************************************************ HS_haplotype1 GCGCCCCCTCTGAACTGCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGATCTGCTAC HS_assemblymutate_np1212 GCGCCCCCTCTGAACTGCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGATCTGCTAC HS_haplotype2 GCGCCCCCTCTGAACTGCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGATCTGCTAC ************************************************************ HS_haplotype1 CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG HS_assemblymutate_np1212 CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG HS_haplotype2 CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG ************************************************************ HS_haplotype1 CAGAGTAGCCAGGGTATCCACCTTGCAGGCCCGGGAGCATAGGTTTTCATTAACCTCCCC HS_assemblymutate_np1212 CAGAGTAGCCAGGGTATCCATCTTGCACCCCCGGGAGCATAGGTTTTCATTAACCTCCCC HS_haplotype2 CAGAGTAGCCAGGGTATCCATCTTGCACCCCCGGGAGCATAGGTTTTCATTAACCTCCCC ******************** ****** ******************************* HS_haplotype1 AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCCGATTC HS_assemblymutate_np1212 AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCAAATTC HS_haplotype2 AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCAAATTC ****************************************************** **** HS_haplotype1 TGTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTCA HS_assemblymutate_np1212 TCTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTAA HS_haplotype2 TCTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTAA * ******************************************************** * HS_haplotype1 TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA HS_assemblymutate_np1212 TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA HS_haplotype2 TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA ************************************************************ HS_haplotype1 TGGGCCTTCATAATGAAGTTGTTTAGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG HS_assemblymutate_np1212 TGGGGCTTCATAATGAAGTTGTTTAGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG HS_haplotype2 TGGGGCTTCATAATGAAGTTGTTTGGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG **** ******************* *********************************** HS_haplotype1 AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGATCCTTTTTTGCAG HS_assemblymutate_np1212 AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGCTCCTTTTTTGCAG HS_haplotype2 AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGCTCCTTTTTTGCAG ********************************************** ************* HS_haplotype1 CATAGTGTATTCAATGTGATGACTGGGACTGTGAAATACAAGAGACCCAAAGCGAGCCAC HS_assemblymutate_np1212 CATAGTGTATTCAATGTGATGACTGGGACTGTGAAATACAAGAGACCCAAAGCGAGCCAC HS_haplotype2 CATAGTGTATTCAATGTGATGACTGAGACTGTGAAATATAAGAGACCCAAAGCGAGCCAC ************************* ************ ********************* HS_haplotype1 ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCACTCGTTTGAAGAATGCA HS_assemblymutate_np1212 ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCACTCGTTTGAAGAATGCA HS_haplotype2 ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCAATCGTTTGAAGAATGCA ******************************************* **************** HS_haplotype1 GCAGCAAACAAACCCTACTTGAAAGTTACCTCATTATGTCTTATTGCTACAGCAAAAGCC HS_assemblymutate_np1212 GCAGCAAACAAACCCTACTTGAAAGTTACCTCATTATGTCTTATTGCTACAGCAAAAGCC HS_haplotype2 GCAGCAAACAAACCCTACTTGAATGTTACCTCATTATGTGTTATTGCTACAGCAAAAGCC *********************** *************** ******************** HS_haplotype1 AACGACCGGCACCCCAACCGTGGCTTCATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA HS_assemblymutate_np1212 AACGACCGGCACCCCAACCGTGGCTTCATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA HS_haplotype2 AACGACCGGCACCCCAACCTTGGCTTCATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA ******************* **************************************** HS_haplotype1 AACTCACCATACAGAGGGATTAAACTGAAGAGTCTTAACAGGGAGTGAGTGGAGGTGAGG HS_assemblymutate_np1212 AACTCACCATACAGAGGGATTAAACTGAAGAGTCTTAACAGGGAGTGAGTGGAGGTGAGG HS_haplotype2 AACTCACCATTCAGAGGGATTAAACTGAAGAGTCTTGACAGGGAGTGAGTGGAGGTGGGG ********** ************************* ******************** ** HS_haplotype1 GGAGCCCAGCCATCAGTTTGATGACTTTTCCCTTATGACTGTTGCCCGGGCGGGTGGTCT HS_assemblymutate_np1212 GGAGCCCAGCCATCAGTTTGATGACTTTTCCCTTATGACTGTTGGCCGGGCGGGTGATCT HS_haplotype2 GGAGCCCAGCTATCAGTTTGATGACTTTTCCCTTATGACTGTTGGCCGGGCGGGTGATCT ********** ********************************* *********** *** HS_haplotype1 GAAACCAAATTTGATTCTCAAACATGTGTCAGTAATTTAAAAGGAGGGACTTTACTGAGA HS_assemblymutate_np1212 GAAACCAAATTTGATTCTCAAACATGTGTCAGTAATTCAAAAGGAGGGACTTGACTGAGA HS_haplotype2 GAAACCAAATTTGATTCTCAAACATGTGTCAGTAATTCAAAAGGAGGGACTTGACTGAGA ************************************* ************** ******* HS_haplotype1 TGATTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC HS_assemblymutate_np1212 TGCTTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC HS_haplotype2 TGCTTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC ** ********************************************************* HS_haplotype1 TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTTATGG HS_assemblymutate_np1212 TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTGATGG HS_haplotype2 TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTGATGG ******************************************************* **** HS_haplotype1 ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAATGATGGGGGGGGTGGAATAAAGC HS_assemblymutate_np1212 ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAATGATGGGGGGGGTGGAATAAAGC HS_haplotype2 ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAAGGATGGGGGGGGTGGAATAAAGC ************************************* ********************** HS_haplotype1 ATTTCTCACTTGATAAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC HS_assemblymutate_np1212 ATTTCTCACTTGATCAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC HS_haplotype2 ATTTCTCACTTGATCAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC ************** ********************************************* HS_haplotype1 TAGAGGGTCAGTCTGTAAGCATTCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG HS_assemblymutate_np1212 TAGAGGGTCAGTCTGGAATCATGCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG HS_haplotype2 TAGAGGGTCAGTCTGGAATCATGCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG *************** ** *** ************************************* HS_haplotype1 AGCCCCAAACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA HS_assemblymutate_np1212 AGCCCCATACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA HS_haplotype2 AGCCCCATACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA ******* **************************************************** HS_haplotype1 GCATTAAAACCCCTTGGTTCATAGCATTTAAGAGTAGTACACAGGTCAAACAAAATTTTC HS_assemblymutate_np1212 GCATTAAAACCCCTTGGTTCATAGCATTTATGAGTAGTACCCAGGTCAAACAAAATTTTC HS_haplotype2 GCATTAAAACCCCTTGGTTCATAGCATTTATGAGTAGTACCCAGGTCAAACAAAATTTTC ****************************** ********* ******************* HS_haplotype1 CCAAAAATATATGAGTGGGGGGTCAGACATTGCCTTCTGTAGTTAAGTGTAGGTAGCACG HS_assemblymutate_np1212 CCAAAAATATATGAGTGGGGGGTCAGACATTGCCCTCTGTAGTTAAGTGTAGGTAGCACG HS_haplotype2 CCAAAAATATATGAGTGGGGGGTCAGACATTGCCCTCTGTAGTTAAGTGTAGGTAGCACG ********************************** ************************* HS_haplotype1 TAAGACTAAGTCTCCCTTTCCCTGATTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT HS_assemblymutate_np1212 TAAGACTAAGTCTCCCTTTCCCTGCGTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT HS_haplotype2 TAAGACTAAGTCTCCCTTTCCCTGCGTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT ************************ ********************************** HS_haplotype1 CAATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC HS_assemblymutate_np1212 CTATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC HS_haplotype2 CTATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC * ********************************************************** HS_haplotype1 CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTTATGGTGTGGC HS_assemblymutate_np1212 CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTTATGGTGTGGC HS_haplotype2 CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTAATGGTGTGGC ************************************************* ********** HS_haplotype1 TGATCATTCTATCAAGGACATATGATGTCACTGCCTCATTTGTAACTTATCTCCATAGTC HS_assemblymutate_np1212 TGATCATTCTATCAAGGACATATGATGTCACTGCCGCATTTGTAACTTATCTCCATAGTC HS_haplotype2 TGATGATTGTCTCAAGGACATATGATGTCACTGCCGCATTTGTAACTTATCTCCATAGTC **** *** * ************************ ************************ HS_haplotype1 TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCTAGACTCAAGCCCCTTTCTT HS_assemblymutate_np1212 TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCTAGACTCAAGCCCCTTTCTT HS_haplotype2 TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCTAGACTCAAGCCCCTTTCTT ************************************************************ HS_haplotype1 CTTGTTTGGAGGGGCAAGCCAAGTGTCAGTCCCAGGAGGCATTGGAACAAGTATCCTTAA HS_assemblymutate_np1212 CTTGTTTGGAGGGGCAAGCCAAGTGTCAGTCCCAGGAGGCATTGGAACAAGTATCCTTAA HS_haplotype2 CTTGTTTGGAGGGGCAAGCCAAGTGTCAGTCCCAGGAGGCATTGGAACAAGTATCCTTAA ************************************************************ HS_haplotype1 GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA HS_assemblymutate_np1212 GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA HS_haplotype2 GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA ************************************************************ HS_haplotype1 GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCAGGCTGGGGA HS_assemblymutate_np1212 GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCAGGCTGGGGA HS_haplotype2 GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCTGGGTGGGGA ************************************************** ** ****** HS_haplotype1 TCACATCTCCTCAGTGATGGTGGTAGGGCACCATCTAGATGGGGGTCGTGGTACACTGCT HS_assemblymutate_np1212 TCACATCTCCTCAGTGATGGTGGTAGGGCACCATCTAGATGGGGGTCGTGGTACACTGCT HS_haplotype2 TCACATCTCCTCAGTGATGGTGGTAGGGCACCATCTAGATGGGGGTCGTGGTACACTGCT ************************************************************ HS_haplotype1 GGGGCCTTTCTGGAGTTCATAAAGATACTTGGCTCCGGGAGCTACTCCCAAAGACCATCC HS_assemblymutate_np1212 GGGGCCTTTCTGGAGTTCATAAAGATACTTGGCTCCGGGAGCTACTCCCAAAGACCATCC HS_haplotype2 GGGGGCTTTCTGGAGTTCATAAAGATACTTGGCTCCGGGAGCTACTCCCAAAGACCATCC **** ******************************************************* HS_haplotype1 ATAATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGTGGCCCGCCC HS_assemblymutate_np1212 ATAATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGAGGCCCGCCC HS_haplotype2 ATAATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGAGGCCCGCCC ************************************************** ********* HS_haplotype1 AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA HS_assemblymutate_np1212 AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA HS_haplotype2 AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA ************************************************************ HS_haplotype1 AAAGAAAAGTTGCTCTGTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG HS_assemblymutate_np1212 AAAGAAAAGTTGCTCTTTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG HS_haplotype2 AAAGAAAAGTTGCTCTTTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG **************** ******************************************* HS_haplotype1 AAGGAAGTCCCATCACTGATCTGGGAAAACAGTCAATGTTTGAGTAGAAGATAAAACTCA HS_assemblymutate_np1212 AAGGAAATCCCGTCACTGATCTGGGAAAGCAGTCAATGTTTGAGTAGAAGATAAAACTCA HS_haplotype2 AAGGAAATCCCGTCACTGATCTGGGAAAGCAGTCAATGTTTGAGTAGAAGATAAAACTCA ****** **** **************** ******************************* HS_haplotype1 GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTAACAAACAAGGAGGGTA HS_assemblymutate_np1212 GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTTACAAACAAGGAGGGTA HS_haplotype2 GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTTACAAACAAGGAGGGTA ******************************************* **************** HS_haplotype1 GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGTGATTTTGAAATACATGATCCTGAC HS_assemblymutate_np1212 GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGGGATGTTGAAATACATGATCCTGAC HS_haplotype2 GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGGGATGTTGAAATACATGATCCTGAC *********************************** *** ******************** HS_haplotype1 ATTATACCAATGCAAGATCATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT HS_assemblymutate_np1212 ATTATACCAATGCAAGATTATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT HS_haplotype2 ATTATACCAATGCAAGATTATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT ****************** ***************************************** HS_haplotype1 CAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT HS_assemblymutate_np1212 GAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT HS_haplotype2 GAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT *********************************************************** HS_haplotype1 ACACAAAATTTTTGTTCCAGAGACAGACGAGTTTCAAAACTTGCCCTGGCATGGTTATGC HS_assemblymutate_np1212 AGACAAAATTTTTGTTCCAGAGACAGACGAGTTTCAAAAATTGCCCTGGCATGGTGATGC HS_haplotype2 AGACAAAATTTTTGTTCCAGAGACAGACGAGTTTCAAAAATTGCCCTGGCATGGTGATGC * ************************************* *************** **** HS_haplotype1 TCCTGGGCGGCGCCCTCTGTCCTCCCCATCGCTAGCAATGTGCTGTGGGCCTATGGGGTC HS_assemblymutate_np1212 TCCTGGGCGGCGCCCTCTGTCCTCCCCATCGCTAGCAATGTGCTGGGGGCCTATGGGGTC HS_haplotype2 TCCTGGGCGGCGCCATATGTCCTCCCCATCGCCAGCAATGTGCTGGGGGCCTATGGGGTC ************** * *************** ************ ************** HS_haplotype1 TCCCTACCCACTTATTCAAAAGGTCAGGTTCTCGCCCAGGCGTGTTTCATCATTTGAAGG HS_assemblymutate_np1212 TCCCTACCCACTTATTCAAAAGGTCAGGTTCTCGCCCAGGCGTGTTTCATCATTTGAAGG HS_haplotype2 TCCCTACCCTCTTATTCAAAAGGTCAGGTTCTCGCCCAGGCGTGTTTCATCATTTGAAGG ********* ************************************************** HS_haplotype1 CATGGACCAGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAAAATAAAGAGTCTGGC HS_assemblymutate_np1212 CATGGACCAGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAAAATAAAGAGTCTGGC HS_haplotype2 CATGGACCAGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAAAATAAAGAGTCTGGC ************************************************************ HS_haplotype1 CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTTTAGTGGACA HS_assemblymutate_np1212 CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTTTAGTGGACA HS_haplotype2 CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTATAGTGGACA ************************************************** ********* HS_haplotype1 TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGACGGCCGAAGG HS_assemblymutate_np1212 TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGACGGCCGAAGG HS_haplotype2 TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGGCAGCCGAAGG ************************************************* * ******** HS_haplotype1 CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG HS_assemblymutate_np1212 CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG HS_haplotype2 CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG ************************************************************ HS_haplotype1 GCAGAGCCCACCCAAAGCATCTGTTCTAAAGCACATCCGGGGCAGCTAATTCTAAAAAAA HS_assemblymutate_np1212 GCAGAGCCCACCCAAAGCATCTGTTCTAAAGCACATCCGGGGCAGCTAATTCTAAAAAAA HS_haplotype2 GCAGAGCCCTCCCAAAGCATCTGTTCTAAAGCACATGCGGGGCGGCTAATTCTAAAAAAA ********* ************************** ****** **************** HS_haplotype1 ACTGGCTTGAAGACAGAGCAGCATCTCTCATGATGCCCAATCCCAATGGGTTTGGCTTAC HS_assemblymutate_np1212 ACTGGCTTGAAGACAGAGCAGCATCTCTCATGATGCCCAATCCCAATGGGTTTGGCTTAC HS_haplotype2 ACTGGCTTGAAGACAGAGCAGCATCTCTGATGATGCCCAATCCCAATGGGTTTGGCTTAC **************************** ******************************* HS_haplotype1 TGGCGAGAGGTATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT HS_assemblymutate_np1212 TGGCGAGAGGTATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT HS_haplotype2 TGGCGAGAGGCATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT ********** ************************************************* HS_haplotype1 TATGGCGCACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC HS_assemblymutate_np1212 TATGGCGCACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC HS_haplotype2 TATGGCACACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC ****** ***************************************************** HS_haplotype1 ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAAGATAAACCA HS_assemblymutate_np1212 ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAGGATAAACCA HS_haplotype2 ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAGGATAAACCA ************************************************** ********* HS_haplotype1 CAAAATTCTTACAGATCTTCAGACTTGCATCACATGTGCCTCATGCCTCACCCAGACATA HS_assemblymutate_np1212 CAAAATTCTTACAGATCTTCAGACTTGCATCACATGTGCCTCATGCCTCACCCAGACATA HS_haplotype2 CAAAATTCTTACAGATCTTCAGACTTGCACCACATGTGCATCATGCCTCACCCAGACATA ***************************** ********* ******************** HS_haplotype1 TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCATGTATCCTCACT HS_assemblymutate_np1212 TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCATGTATCCTCACT HS_haplotype2 TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCAAGTTTCCTCACT ************************************************ ** ******** HS_haplotype1 GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG HS_assemblymutate_np1212 GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG HS_haplotype2 GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG ************************************************************ HS_haplotype1 CCTCACGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA HS_assemblymutate_np1212 CCTCCCGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA HS_haplotype2 CCTCCCGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA **** ******************************************************* HS_haplotype1 AACGACCTCAATGCAGAATTCAGAGCTCCGGTGATGTTGAACGGCTCGAGATCAAGTCCA HS_assemblymutate_np1212 AACGACCTCAATGCAGAATTCAGAGCTCAGGTGATGTTGAACCGCTCGAGATCAAGTCCG HS_haplotype2 AACGACCTCAATGCAGAATTCAGAGCTCAGGTGATGTTGAACCGCTCGAGATCAAGTCCG **************************** ************* **************** HS_haplotype1 CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA HS_assemblymutate_np1212 CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA HS_haplotype2 CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA ************************************************************ HS_haplotype1 CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAACGGCCTGT HS_assemblymutate_np1212 CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAAGGGCCTGT HS_haplotype2 CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAAGGGCCTGT **************************************************** ******* HS_haplotype1 CAACCTGGAAATAGCAAAAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA HS_assemblymutate_np1212 CAACCTGGAAATAGCAACAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA HS_haplotype2 CAACCTGGAAATAGCAACAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA ***************** ****************************************** HS_haplotype1 GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT HS_assemblymutate_np1212 GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT HS_haplotype2 GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT ************************************************************ HS_haplotype1 AGAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA HS_assemblymutate_np1212 AGAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA HS_haplotype2 AAAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA * ********************************************************** HS_haplotype1 ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC HS_assemblymutate_np1212 ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC HS_haplotype2 ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC ************************************************************ HS_haplotype1 CGGCCTTTTCATCCTGCCTGGGGAAGGTGGGGAGAATATGGGACCCCTCTGCATGGGGAT HS_assemblymutate_np1212 CGGCCTTTTCATCCTGCCTGGGGAAGGTGGGGAGAATATGGGACCCCTCTGCATGGGGAT HS_haplotype2 CGGCCTTTCCATCCTGCCTGGAGAAGGTGGGGAGAATATGGGACCCCTCTGCATGGGGAT ******** ************ ************************************** HS_haplotype1 CGCTGATGTGCAATTTTAATAGAAGGGTTCATGACGAAATGTGTGCCTCAGTGCCGAGTG HS_assemblymutate_np1212 CGCTGATGTGCAATTTTAATAAAAGGGTTCATGATGAGATGTGTGCCTCAGTGCCGAGTG HS_haplotype2 CGCTGATGTGCAATTTTAATAAAAGGGTTCATGATGAGATGTGTGCCTCAGTGCCGAGTG ********************* ************ ** ********************** HS_haplotype1 AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC HS_assemblymutate_np1212 AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC HS_haplotype2 AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC ************************************************************ HS_haplotype1 ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGAGCTTGCAGTATAATAATAAGTCTTT HS_assemblymutate_np1212 ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGAGCTCGCAGTATAATAATAAGTCTTT HS_haplotype2 ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGAGCTCGCAGTATAATAATAAGTCGTT ************************************** ****************** ** HS_haplotype1 GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCAACCTCAGAGCTGC HS_assemblymutate_np1212 GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCAACCTCAGAGCTGC HS_haplotype2 GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCAACCTCAGAGCTGC ************************************************************ HS_haplotype1 TCATCATCCGCGGTTCTACTTCTTAAACTGCGGGGAGGCATTTATAGTTTTTCTGCACCT HS_assemblymutate_np1212 TCATCATCCGCGGTTCTACTTCTTAAACTGCGGGGAGGCATTTATAGTTTTTCTGCACCT HS_haplotype2 TCATCATCCGCGGTTCTACTTCTTAAACTGCGGGGAGGCATTTATAGTTTTTCTGCACCT ************************************************************ HS_haplotype1 TCAATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAAGCAAAGTCAAGACAATAGAAA HS_assemblymutate_np1212 TCAATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAAGCAAAGTCAAGACAATAGAAA HS_haplotype2 TCAATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAAGCAAAGTCAAGACAATAGAAA ************************************************************ HS_haplotype1 GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGTGGATCTT HS_assemblymutate_np1212 GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGTGGATCTT HS_haplotype2 GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGTGGATCTT ************************************************************ HS_haplotype1 CTGTGGAGATAAGTGTGTTTCAAAAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT HS_assemblymutate_np1212 CTGTGGAGATAAGTGTGTTTCAAAAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT HS_haplotype2 CTGTGGAGATAAGTGTGTTTCAAAAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT ************************************************************ HS_haplotype1 TGACCTACCTTCTCTCAGTAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT HS_assemblymutate_np1212 TGACCTACCTTCTCTCAGTAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT HS_haplotype2 TGACCGGCCTTCTCTCAATAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT ***** ********** ****************************************** HS_haplotype1 GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGAGATCACTAGGCATCA HS_assemblymutate_np1212 GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGAGATCACTAGGCATCA HS_haplotype2 GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGGGATCACTAGGCATCA ******************************************** *************** HS_haplotype1 TGTAGAGGTAGTCAGGACTCACAGAGCTTCTACATGGTGAGAAGTGTCTGAAGAGCTCTG HS_assemblymutate_np1212 TGTAGAGGTAGTCAGGACTCACAGAGCTTCTACATGGTGAGAAGTGTCTGAAGAGCTCTG HS_haplotype2 TGTGGAGGTAGTCACGACTGACAGAGCATCTACATGGTGAGAAGTGTCTGAAGAGCTCTG *** ********** **** ******* ******************************** HS_haplotype1 GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTCCAACCTCTCCCCCCCCAAAGGAGACTC HS_assemblymutate_np1212 GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTCCAACCTCTCCCCCCCCAAAGGAGACTC HS_haplotype2 GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTACAACATCTCCCCCCCCAATGGAGACTC ******************************** **** ************* ******** HS_haplotype1 TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGCCGAGTCAGGAGGTCTTG HS_assemblymutate_np1212 TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGCCGAGTCAGGAGGTCTTG HS_haplotype2 TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGTCGAGTCAGGAGGTCTTG ****************************************** ***************** HS_haplotype1 ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCCTCCTGTAGGAACACATTCCA HS_assemblymutate_np1212 ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCCTCCTGTAGGAACACATTCCA HS_haplotype2 ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCTTCCTGTAGGAACACATTCCA *************************************** ******************** HS_haplotype1 GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT HS_assemblymutate_np1212 GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT HS_haplotype2 GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT ************************************************************ HS_haplotype1 CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC HS_assemblymutate_np1212 CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC HS_haplotype2 CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC ************************************************************ HS_haplotype1 TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC HS_assemblymutate_np1212 TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC HS_haplotype2 TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC ************************************************************ HS_haplotype1 AAACACAAATTGATAAACTTCCCATTTAATATTAACTGCAGAACTGGGGATGCATCTATC HS_assemblymutate_np1212 AAACACAAATTGATAAACTTCCCATTTAATATTAACTGCACAACTGGGGATGCATCTATC HS_haplotype2 AGACAGAAATTGATAAACTTCCCATTTAATATTAACTGCACAACTGGGGATGCATCTATC * *** ********************************** ******************* HS_haplotype1 CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC HS_assemblymutate_np1212 CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC HS_haplotype2 CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC ************************************************************ HS_haplotype1 TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAACTCTCCTGCTTAAAACTTGTTTCCT HS_assemblymutate_np1212 TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAAGTCTCCTGCTTAAAACTTGTTTCCT HS_haplotype2 TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAAGTCTCCTGCTTAAAACTTGTTTCCT *********************************** ************************ HS_haplotype1 TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT HS_assemblymutate_np1212 TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT HS_haplotype2 TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT ************************************************************ HS_haplotype1 CTGGCCTCCCAACAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTATTT HS_assemblymutate_np1212 CTGGCCTCCCAACAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTTTTT HS_haplotype2 CTGGCCTCCCAAAAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTTTTT ************ ******************************************* *** HS_haplotype1 AGGCGATTTTGGGATACCAAAATGGGGAGAATGTACAAATCTACTAAATTGTTTTTAATT HS_assemblymutate_np1212 AGGCGATTTTGGGAGACCAAAATGGGGAGAATGTACAAATCTACTAAATTGTTTTTAATT HS_haplotype2 AGGCGATTTTGGGAGACCAAAATGGGGAGAATGTACAAATCTACTAAATTGTTTTTAATT ************** ********************************************* HS_haplotype1 AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCCGGTGAGGCAAGGCAAATAGGCCAG HS_assemblymutate_np1212 AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCAGGTGAGGCAAGGCAAATAGGCCAG HS_haplotype2 AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCAGGTGAGGCAAGGCAAATAGGCCAG *********************************** ************************ HS_haplotype1 CCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG HS_assemblymutate_np1212 CCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG HS_haplotype2 TCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG *********************************************************** HS_haplotype1 ACTGAAGTCTTAACTTTGCAGTGGAATTCTCTGAAAAGATGTTTCTCAAGAATTGCTCAG HS_assemblymutate_np1212 ACTGAAGTCTTAACTTTGCAGTGGAATTCTCTGAAAAGATGTTTCTCAAGAATTGCTCAG HS_haplotype2 ACTGAATTCATAACTTTGCAGTGGAATTCTCAGAAAAGATGTTTCTCAAGAATTGCTGAG ****** ** ********************* ************************* ** HS_haplotype1 GTTGGGCAAAAATTGCTTTTGCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG HS_assemblymutate_np1212 GTTGGGCAAAAATTGCTTTTGCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG HS_haplotype2 GTTGGGCAAAAATTGCTTTTTCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG ******************** *************************************** HS_haplotype1 TCAATCTGTTATGATCTCATGTGTTCAATATTAAATAGAAAAGGTACTGTTTTGGCTTCC HS_assemblymutate_np1212 TCAATCTGTTATGATCTCATGTGTTCAACATTAAATAGAAAAGGTACTGTTTTGGCTTCA HS_haplotype2 TCAATCTGTTATGATCTCATGTGTTCAACATTAAATAGAAAAGGTACTGTTTTGGCTTCA **************************** ****************************** HS_haplotype1 GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGCACAGAAGCCGAGGGAATTAGC HS_assemblymutate_np1212 GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGCACAGAAGCCGAGGGAATTAGC HS_haplotype2 GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGGACAGAAGCCGAGGGAATTAGC ************************************** ********************* HS_haplotype1 CTTGTATGTTCAGCCTGAATGTTGACTCTGCATGCTTCTCCTCAGCCCTTTCTTCAGTCT HS_assemblymutate_np1212 CTTGTATGTTCAGCCTGAATGTTGACTCTGCATGCTTCTCCTCAGCCCTTTCTTCAGTCT HS_haplotype2 CTTGTATGTTCAGCCTGAACGTTGACTCTGGATGCTTCTCCTCAGCCCTTTCTTCAGTCT ******************* ********** ***************************** HS_haplotype1 CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC HS_assemblymutate_np1212 CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC HS_haplotype2 CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC ************************************************************ HS_haplotype1 TGCTTTCCTCAGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCAAGG HS_assemblymutate_np1212 TGCTTTCCTCCGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCAAGG HS_haplotype2 TGCTTTCCTCCGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCAAGG ********** ************************************************* HS_haplotype1 GAGTCAAGATCATCACTCCTGGCATGCCATACAAAAAAACAGCATCAAGATCTTGCAAGT HS_assemblymutate_np1212 GAGTCAAGATCATCACTCCAGGCATGCCATACAAAAAAACAGCATCAAGATCTTGCAAGT HS_haplotype2 GAGTCAAGATCATCACTCCAGGCATGCCATACAAAAAAACAGCATCAAGATCTTGCAAGT ******************* **************************************** HS_haplotype1 TTATGTCCATATTTGTGACTTGAAAGTGCTGCTGGCTCTAGTGGAAGCCAGCAAGTATAT HS_assemblymutate_np1212 TTATGTCCCTATTTGTGACTTGAAAGTGCTCCTGGCTCTAGTGTAAGCCAGCAAGTATAT HS_haplotype2 TTATGTCCCTATTTGTGACTTGAAAGTGCTCCTGGCTCTAGTGTAAGCCAGCAAGTATAT ******** ********************* ************ **************** HS_haplotype1 TACTTCAGAGTCATTACAAGCAAGGTAGGAGTGCCACTGCTCCTGATTGCCCATCACTGC HS_assemblymutate_np1212 TACTTCTGAGTCATTACAAGCAAGGGAGGAGTGCCACTACTCCTGATTGCCCATCACTGC HS_haplotype2 TACTTCTGAGTCATTACAAGCAAGGGAGGAGTGCCACTACTCCTGATTGCCCATCACTGC ****** ****************** ************ ********************* HS_haplotype1 ACTGTTTCTATGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA HS_assemblymutate_np1212 ACTGTTTCTAGGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA HS_haplotype2 ACTGTTTCTAGGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA ********** ************************************************* HS_haplotype1 GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGATAGAGGACACGTAATCTGGACGGT HS_assemblymutate_np1212 GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGATAGAGGACACGTAATCTGGATGGT HS_haplotype2 GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGATAGAGGACACGTAATCTGGATGGT ******************************************************** *** HS_haplotype1 GGAGGGGTTTTTTTCTTTTTGTTGCTCACGTGGTATAAATTTTACTTAGCCGGGCTCCTG HS_assemblymutate_np1212 GGAGGGGTTTTTTTCATTTTGTTGCTCACGTGGTATAAATTTTACTTAGCCGGGCTCCTG HS_haplotype2 GGAGGGGTTTTTTTCATTTTGTAGCTCACGTGGTATAAATTATACTTAGCCGGGCTCCTG *************** ****** ****************** ****************** HS_haplotype1 ACAGGATTACCCAAATTCACCACCAGATTGCACTATCTATCATCTGAGGTTGCGCAGTTT HS_assemblymutate_np1212 ACAGGATTACCCAAATTCACCACCAGATTGCACTATCTATCATCTGAGGTTGCGCAGTTT HS_haplotype2 ACAGGATTACCCAAATTCACCACCAGACTGCACTATCTATCATCTGAGGTTGCGCAGTTT *************************** ******************************** HS_haplotype1 GTGCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC HS_assemblymutate_np1212 GTGCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC HS_haplotype2 GTTCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC ** ********************************************************* HS_haplotype1 TAGGAGTTTGGGGCTTCTTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA HS_assemblymutate_np1212 TAGGAGTTTGGGGCTTATTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA HS_haplotype2 TAGGAGTTTGGGGCTTATTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA **************** ******************************************* HS_haplotype1 CTGACATTTTGAGGCTGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA HS_assemblymutate_np1212 CTGACATTTTGAGGCAGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA HS_haplotype2 CTGACATTTTGAGGCAGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA *************** ******************************************** HS_haplotype1 GAGAATGACCACCCACAACTCAAATTAGCCCTCATTTTAGTAGCTACTTAAAATTAATTT HS_assemblymutate_np1212 GAGAATGACCACCCACAAATCAAATTAGCCCTCATTTTAGTAGCCACTTAAAATTAATTT HS_haplotype2 GAGAATGACCACCCACAAATCAAATTAGCCCTCATTTTAGTAGCCACTTAAAATTAATTT ****************** ************************* *************** HS_haplotype1 TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAATAG HS_assemblymutate_np1212 TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAATAG HS_haplotype2 TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAAAAG ********************************************************* ** HS_haplotype1 GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT HS_assemblymutate_np1212 GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT HS_haplotype2 GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT ************************************************************ HS_haplotype1 TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTTATCAG HS_assemblymutate_np1212 TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTTATCAG HS_haplotype2 TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTTATCAG ************************************************************ HS_haplotype1 CGTTCTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTTAATTTTTCTTG HS_assemblymutate_np1212 CGTTCTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTTAATTTTTCTTG HS_haplotype2 CGTTTTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTCAATTTTTCTTG **** ******************************************* *********** HS_haplotype1 AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG HS_assemblymutate_np1212 AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG HS_haplotype2 AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG ************************************************************ HS_haplotype1 GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC HS_assemblymutate_np1212 GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC HS_haplotype2 GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC ************************************************************ HS_haplotype1 AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTGTGCATGTTT HS_assemblymutate_np1212 AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTGTGCATGTTT HS_haplotype2 AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTCTGCATGTTT ************************************************** ********* HS_haplotype1 GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAAAAATCTCACTCTACAATGATGGCT HS_assemblymutate_np1212 GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAAAAATCTCACTCTACAATGATGGCT HS_haplotype2 GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAACAATCTCACTCTACAATGATGGCT ************************************ *********************** HS_haplotype1 CTGTCTCTGTGGGATATACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA HS_assemblymutate_np1212 CTGTCTCTGTGGGATCTACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA HS_haplotype2 CTGTCTCTGTGGGATCTACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA *************** ******************************************** HS_haplotype1 ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG HS_assemblymutate_np1212 ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG HS_haplotype2 ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG ************************************************************ HS_haplotype1 AGTTCATTAACCAAACCAGGCTGAAGTTATCCAGTCTGGGAGTGAGGCATTCAACAGCAA HS_assemblymutate_np1212 AGTTCATTAACCAAACCAGGCTGCAGTTATCCAGTCTGGGAGTGAGGCATTCAACAGCAA HS_haplotype2 AGTTCATTAACCAAACCAGGCTGCAGTTATCCAGTCTGGGAGTGAGGCATTCAACAGCAA *********************** ************************************ HS_haplotype1 GATGCATTGCTCCCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATGGTACTC HS_assemblymutate_np1212 GATGCATTGCTCCCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATGGTACTC HS_haplotype2 GATGCATTGGTCGCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATCGTACTC ********* ** **************************************** ****** HS_haplotype1 TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGAAACGCTCCCGGGGCTG HS_assemblymutate_np1212 TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGAAACGCTCCCGGGGCTG HS_haplotype2 TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGTAACGCTCCCAGGGCTG ******************************************* ********* ****** HS_haplotype1 CCAGGTCTCTCTTGCTCGTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGAGACTGGTG HS_assemblymutate_np1212 CCAGGTCTCTCTTGCTCGTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGAGACTGGTG HS_haplotype2 CCAGGTCGCTCTTGCTCCTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGACACTGGTG ******* ********* ********************************** ******* HS_haplotype1 CTGAGCCTCCATCTTGGCGATCTTAGTCCGGGCTCAGGAGTCAGATGGTGGCTAACCTCA HS_assemblymutate_np1212 CTGAGCCTCCATCTTGGCGATCTTATTCCGGGCTCAGGAGTCAGATGGTGGCTAACCTCA HS_haplotype2 CTGATCCTCCATCTTCGCGATCTTATTCCGGGCTCAGGAGTCAGATGGTGGCTAACCTCA **** ********** ********* ********************************** HS_haplotype1 TTTCCCCCATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA HS_assemblymutate_np1212 TTTCCCCCATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA HS_haplotype2 TTTCCCCCATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA ************************************************************ HS_haplotype1 CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAAGCACTTTGTTTCTTCAAAGATT HS_assemblymutate_np1212 CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAAGCACTTTGTTTCTTCAAAGATT HS_haplotype2 CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAAGCACTTTGTTTCTTCAAAGATT ************************************************************ HS_haplotype1 CGGTCAGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCCAGTCCCCT HS_assemblymutate_np1212 CGGTCAGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCCAGTCCCCT HS_haplotype2 CGGTCAGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCGAGTCCCCT *************************************************** ******** HS_haplotype1 CCATAAAATGACATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT HS_assemblymutate_np1212 CCATAAAATGACATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT HS_haplotype2 CCATAAAATGAAATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT *********** ************************************************ HS_haplotype1 TCAACGGTCTCATTGTCTGCCACTGTTCACATATGTGGTCTCAGCCTTTCGTAGTCCCAA HS_assemblymutate_np1212 TCAACGGTCTCATTGTCTGCCACTGTTCACATCTGTGGTCTCAGCCTTTCGTAGTCCCAA HS_haplotype2 TCAACGGTCTCATTGTCTGCCACTGTTCACATCTGTGGTCTCAGCCTTTCGTAGTCCCAA ******************************** *************************** HS_haplotype1 AATACTTATTTAAACAGGAATTGGGCAACCCTACGCAACAACACCTGTGCAGCTTCAGAT HS_assemblymutate_np1212 AATTCTTATTTAAACAGGAACTGGGCAACCCTACGCAACAACACCTCTGCAGCTTCAGAT HS_haplotype2 AATTCTTATTTAAACAGGAACTGGGCAACCCTACGCAACAACACCTCTGCAGCTTCAGAT *** **************** ************************* ************* HS_haplotype1 TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAAGAGACGATG HS_assemblymutate_np1212 TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAAGAGACGATG HS_haplotype2 TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAGGAGACGATG ************************************************** ********* HS_haplotype1 GCTCAGGTCAAATAAACAAATATACACGATTGCTCCACTCCTGCAGTCTCGGCCCTTTGC HS_assemblymutate_np1212 GCTCAGGTCAAATAAACAAATATACACGATTGCTCCACTCCTGCAGTCTCGGCCCTTTGC HS_haplotype2 GCTCAGGTCAAATAAACAAATATACACAATTGCTCCACTCCTGCAGTCTCAGCCCTTTGC *************************** ********************** ********* HS_haplotype1 CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCACCTGGGGTTCTGTTACATA HS_assemblymutate_np1212 CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCACCTGGGGTTCTGTTACATA HS_haplotype2 CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCAGCTGGGGTTCTGTTACATA ***************************************** ****************** HS_haplotype1 GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC HS_assemblymutate_np1212 GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC HS_haplotype2 GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC ************************************************************ HS_haplotype1 ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA HS_assemblymutate_np1212 ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA HS_haplotype2 ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA ************************************************************ HS_haplotype1 TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG HS_assemblymutate_np1212 TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG HS_haplotype2 TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG ************************************************************ HS_haplotype1 ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG HS_assemblymutate_np1212 ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG HS_haplotype2 ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG ************************************************************ HS_haplotype1 ATCCACCCACGGACCTCTGGTGATCCATGTGGTCTAAGGCATATTCTATGGGTACATAGT HS_assemblymutate_np1212 ATCCACCCACGGACCTCTGGTGATCCATGTGGTCTAAGGCATATTCTATGGGTACATAGT HS_haplotype2 ATCCACCCACGGACCTCTGGTGAACCATGTGGTCTAAGGCATAGTCTATGGGTACATAGT *********************** ******************* **************** HS_haplotype1 GAAATTCCAGCACTTCAGGTGGTGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC HS_assemblymutate_np1212 GAAATTCCAGCACTTCAGGTGGTGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC HS_haplotype2 GAAGTTCCAGCACTTCAGGTGGTGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC *** ******************************************************** HS_haplotype1 TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT HS_assemblymutate_np1212 TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT HS_haplotype2 TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT ************************************************************ HS_haplotype1 ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA HS_assemblymutate_np1212 ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA HS_haplotype2 ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA ************************************************************ HS_haplotype1 GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGAAGATCTCGGCTATTTGAA HS_assemblymutate_np1212 GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGAAGATCTCGGCTATTTGAA HS_haplotype2 GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGGAGATCTCGGCTATTTGAA ***************************************** ****************** HS_haplotype1 CTATATTGGGATGTCATTCTTTAGAACAGGTCTACTCCCTATTTTTGCATTGTCTAGACA HS_assemblymutate_np1212 CTATATTGGGATGTCATTCTTTAGAACAGGTCTAGTCCCTATTTTTGCATTGTCTAGTCA HS_haplotype2 CTATATTGGGATGTCATTCTTTAGAACAGGTCTAGTCCCTATTTTTGCATTGTCTAGTCA ********************************** ********************** ** HS_haplotype1 CCATTCTGGACCATGCTCCGAACGTGTGAAGGTTGCCCGTCTTCATAATTTCTGTTTACG HS_assemblymutate_np1212 CCATTCTGGACCATGATCCGAACGTGTGAAGGTTGCCCTTCTTCATAATTTCTGTTTACG HS_haplotype2 CCATTCTGGACCATGATCCGAACGTGTGAAGGTTGCCCTTCTTCATAATTTCTGTTTACG *************** ********************** ********************* HS_haplotype1 GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT HS_assemblymutate_np1212 GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT HS_haplotype2 GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT ************************************************************ HS_haplotype1 GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT HS_assemblymutate_np1212 GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT HS_haplotype2 GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT ************************************************************ HS_haplotype1 AGGACGAGCAGGAGCAAGCCTCCTCAGGCTTGCGTCTATAGTATATGTCGCAGAGAGAGG HS_assemblymutate_np1212 AGGACGAGCAGGAGCAAGCCTCCTCAGGCTTGCTTCTATAGTATATGTCGCAGAGAGAGG HS_haplotype2 AGGACGAGCAGGAACAAGCCTCCTCAGGCTTGCTTCTATAGTATATGTCGCAGAGAGAGG ************* ******************* ************************** HS_haplotype1 GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC HS_assemblymutate_np1212 GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC HS_haplotype2 GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC ************************************************************ HS_haplotype1 TCTGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT HS_assemblymutate_np1212 TCAGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT HS_haplotype2 TCAGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT ** ********************************************************* HS_haplotype1 GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAACATTCCACCTCGTGATAAC HS_assemblymutate_np1212 GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAATATTCCACCTCGTGATAAC HS_haplotype2 GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAATATTCCACCTCGTGATAAC ***************************************** ****************** HS_haplotype1 TTCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATGCTGTAATCTTGTTA HS_assemblymutate_np1212 TCCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATACTGTAATCTTGTTA HS_haplotype2 TCCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATACTGTAATCTTGTTA * ******************************************* ************** HS_haplotype1 GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGTGGAGCGAAACCT HS_assemblymutate_np1212 GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGTGGAGCGAATCCT HS_haplotype2 GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGAGGAGCGAATCCT *********************************************** ******** *** HS_haplotype1 TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGTGGATTCACTAGCCCCCTGCTCTT HS_assemblymutate_np1212 TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGTGGATTCACTCGCCCCCTGCTCTT HS_haplotype2 TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGAGGATTCACTCGCCCCCTGCTCTT ************************************ ********* ************* HS_haplotype1 GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTGAATAACAGAGCCATACCGCAAA HS_assemblymutate_np1212 GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTGAATAACAGAGCCATACCGCAAA HS_haplotype2 GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTGAATAACAGAGCCATACCGCAAA ************************************************************ HS_haplotype1 TCTCTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGATGAACAAAAAA HS_assemblymutate_np1212 TCTCTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGGTGAACAAAAAA HS_haplotype2 TCTTTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGGTGAACAAAAAA *** ******************************************** *********** HS_haplotype1 AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT HS_assemblymutate_np1212 AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT HS_haplotype2 AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT ************************************************************ HS_haplotype1 GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG HS_assemblymutate_np1212 GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG HS_haplotype2 GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG ************************************************************ HS_haplotype1 GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA HS_assemblymutate_np1212 GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA HS_haplotype2 GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA ************************************************************ HS_haplotype1 ACCCTGCAAGCTAGAGTGTGGCTCTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT HS_assemblymutate_np1212 ACCCTGCCAGCTAGAGTGTGGCTCTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT HS_haplotype2 ACCCTGCCAGCTAGAGTGAGGCTCTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT ******* ********** ***************************************** HS_haplotype1 TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGAAAACTAAATGCTTTCTC HS_assemblymutate_np1212 TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGAAAACTAAATGCTTTCTC HS_haplotype2 TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGATAACTAAATGCTTTCTC ******************************************* **************** HS_haplotype1 CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT HS_assemblymutate_np1212 CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT HS_haplotype2 CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT ************************************************************ HS_haplotype1 AGACATGTCAGGTAGTGAGGCTAAAAAATAAATAGTGTAGGATTATTAAATGACTCCAGA HS_assemblymutate_np1212 AGACATGTCAGGTAGTGAGGCTAAAAAATAAATAGTGTAGGATTATTAAATGACTCCAGA HS_haplotype2 AGACATGTCAGGTAGTGAGGCTAAAAAATAAATAGTGTAGGATTATTAAATGACTCCAGA ************************************************************ HS_haplotype1 AGACCTCAAAGTCACCCTTCCACTCCATGTAGATTTCTCATGGTGGCTAAGGTAAGCCCA HS_assemblymutate_np1212 AGACCTCAAAGTCACCCTTCCACTCCATGTAGATTTCTCATGGTGGCTAAGGTAAGCCCA HS_haplotype2 AGACCTCAAAGTCACCTTTCCACTCCATGTAGATTTCTCATGGTGGCCAAGGTAACCCCA **************** ****************************** ******* **** HS_haplotype1 GAGGGCACCACCTCCGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA HS_assemblymutate_np1212 GAGGGCACCACCTCCGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA HS_haplotype2 GAGGGCACCACCTCCGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA ************************************************************ HS_haplotype1 TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTGAGCCTGGACAA HS_assemblymutate_np1212 TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTGAGCCTGGCCAA HS_haplotype2 TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTGAGCCTGGCCAA ******************************************************** *** HS_haplotype1 GACCCTCTACTCAGCCACGTGGAAATTAAGAGCCAGTGCAGCCCAACTCTATAAGAGGAT HS_assemblymutate_np1212 GACCCTCTACTCAGCCACGTGGAAATTAAGAGCCAGTGGAGCCCAACTCTATAAGAGGAT HS_haplotype2 GACCCTCTACTCAGCCACGTGGAAATTAAGAGCCAGTGGAGCCCAACTCTATAAGAGGAT ************************************** ********************* HS_haplotype1 TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC HS_assemblymutate_np1212 TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC HS_haplotype2 TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC ************************************************************ HS_haplotype1 TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC HS_assemblymutate_np1212 TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC HS_haplotype2 TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC ************************************************************ HS_haplotype1 CAACAGGTGAAGCCTCTTCCCCAGCTTCGGCCTAAATTGTTGGTACAACAGATTCCTCCG HS_assemblymutate_np1212 CAACAGGTGAAGCCTCTTCCCCAGCTTCGGCCTAAATTGTTGGTACAACAGATTCCTCCG HS_haplotype2 CAACGGGTGAAGCCTCTTCCCCAGCTTCGGCCTCAATTGTTGGTACAACAGATTCCTCCG **** **************************** ************************** HS_haplotype1 CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACGATCT HS_assemblymutate_np1212 CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACGATCT HS_haplotype2 CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACAATCT ******************************************************* **** HS_haplotype1 AATTCCTGTAGCCCCCCTTGAGGGGTAACATGGTGACTTCTGACAGCTCACACAAACTCC HS_assemblymutate_np1212 AATTCCTGTAGCCCCCCTTGAGGGGTAACATGGTGACTTCTGATAGCTCACACAAACTAC HS_haplotype2 AATTCCTGTAGCCCCCCTTGAGGGGTAACATGGTGACTTCTGATAGCTCACACAAACTAC ******************************************* ************** * HS_haplotype1 AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGGGAATAGTATCTCAA HS_assemblymutate_np1212 AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGTGAATAGTATCTCAA HS_haplotype2 AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGTGAATAGTATCTCAA ********************************************* ************** HS_haplotype1 GCCACGACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT HS_assemblymutate_np1212 GCCACCACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT HS_haplotype2 GCCACCACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT ***** ****************************************************** HS_haplotype1 TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG HS_assemblymutate_np1212 TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG HS_haplotype2 TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG ************************************************************ HS_haplotype1 GGCTGGTACGAAAGAGTCAAATTCTTCTTTTGGCCGCCGCACCTAGAATCAGCAAAGTGT HS_assemblymutate_np1212 GGCTGGTACGAAAGAGTCAAATTCTTATCTTGGCCGCCGCACCTAGAATCAGCAAAGTGT HS_haplotype2 GGCTGGTACGAAAGAGTCAAATTCTTATCTTGGCCGCCGCACCTAGAATCAGCAAAGTGT ************************** * ******************************* HS_haplotype1 ACAGTGAGCCCGTTATTGTTTAGCACAGAGATACAATATACCAATTTCTGCATTTTATTA HS_assemblymutate_np1212 ACAGTGAGCCCATTATTGTTTAGCACAGAGATACAATATACCAATTTCTGCATTTTATTA HS_haplotype2 ACAGTGAGCCCATTATTGTTTAGCACAGAGATACAATATACCCATTTCTGCATTTTATTA *********** ****************************** ***************** HS_haplotype1 CAGCTCATACCCACTTTAGTATGGAAACTCCTAGGAGTTTCAACTCTCATAGTACTCATA HS_assemblymutate_np1212 CAGCTCATACCCACTTTAGTATGGAAACTCCTAGGAGTTTCAACTCTCATAGTACTCATA HS_haplotype2 CAGCACATACCCACTTTAGTATGGAAACTCCTAGGAGTTTCAACTTTCATAGTACTCATA **** **************************************** ************** HS_haplotype1 GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACCCTTGCAACTCGGAACATGATAACC HS_assemblymutate_np1212 GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACCCTTGCAACTCGGAACATGATAACC HS_haplotype2 GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACTCTTGAAACTCGGAACATGATAACC *********************************** **** ******************* HS_haplotype1 TGAAAAGGATCCGATGAGGAGGGAGCACCCAGCTAGAAATAATAGATGCATGGGGTGCCT HS_assemblymutate_np1212 TGAAAAGGATCCGATGAGGAGGGAGCACCCAGCTAGAAATAATAGATGCATGGGGTGCCT HS_haplotype2 TGAAAAGGATCCGATGGGGAGGGAGCTCCCAGCTATAAATAATAGATGCATGGGGTGCCT **************** ********* ******** ************************ HS_haplotype1 TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA HS_assemblymutate_np1212 TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA HS_haplotype2 TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA ************************************************************ HS_haplotype1 CCAGCTGGATTTTTCCGGGTCTTCTTGGACCAGCCCCAAATACATTGGATTTTAATAAAT HS_assemblymutate_np1212 CCAGCTGGATTTTTCCGGGTCTTCTTGGACCAGCCCCAAATACATTGGATTTTAATAAAT HS_haplotype2 CCAGCTGGATTTTTCCGGGTCTTCTTCGACCAGCCCCAAATACATTGGATTTTAATAAAT ************************** ********************************* HS_haplotype1 GTCATGCCCAGCAGAGTTTATTCTCAGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT HS_assemblymutate_np1212 GTCATGCCCAGCAGAGTTTATTCTCAGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT HS_haplotype2 GTCATGTCCAGCAGAGTTTATTCTCCGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT ****** ****************** ********************************** HS_haplotype1 ATATCTGTTTTTGATTGCATCGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT HS_assemblymutate_np1212 ATATCTGTTTTTGATTGCATCGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT HS_haplotype2 ATATCTGTTTTTGATTGCATGGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT ******************** *************************************** HS_haplotype1 TCTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGTGGATGGTGTTTACCCAAA HS_assemblymutate_np1212 TTTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGCGGATGGTGTTTACCCAAA HS_haplotype2 TTTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGCGGATGGTGTTTACCCAAA * *************************************** ****************** HS_haplotype1 AGAAAATAATGTACATGCAAACTTTAAAACACCAGATGTGAGCCCCCTTTGTTGATTCAC HS_assemblymutate_np1212 AGAAAATAATGTACATGCAAACTTTAAAACACCAGATGTGAGCCCCCTTTGTTGATTCAC HS_haplotype2 AGAAAATAATGTACATGCAAACTTTAAAACACCACATGTGAGCCCCCTTTGTTGATTCAC ********************************** ************************* HS_haplotype1 CTCAAATTAATATCAGAGAGTGGGAGCACTCCCGGATTTTTACCTAATTATGTTGCTTAC HS_assemblymutate_np1212 CTCAAATTAACCTCAGAGAGTGGCAGCACTCCAGGATTTTTACCTATTTATGTTGCTTAC HS_haplotype2 CTCAAATTAACCTCAGAGAGTGGCAGCACTCCAGGATTTTTACCTATTTATGTTGCTTAC ********** *********** ******** ************* ************* HS_haplotype1 AGGGCAAAGAATTAATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAAGCATC HS_assemblymutate_np1212 AGGGCAAAGAATATATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAAGCAGC HS_haplotype2 AGGGCAAAGAATATATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAAGCAGC ************ ******************************************** * HS_haplotype1 TGACTGTTTAATCTTGTGAAATGTAGTCCAGCAAAAGGGCTCAAATACCATGCATACTCG HS_assemblymutate_np1212 TGGCTGTTTAATCTAGTGAAATGTAGTCCAGCAGAAGGGCTCAAATACCATGCATACTCG HS_haplotype2 TGGCTGTTTAATCTAGTGAAATGTAGTCCAGCAGAAGGGCTCAAATACCATGCATACTCG ** *********** ****************** ************************** HS_haplotype1 TCATAAGCAGCAGCTGGGACATAGCCTTAATTATAGTCACCCCAGCTAAATTAGAAGAAT HS_assemblymutate_np1212 TCATAAGCAGCAGCTGGGACATAGCCTTCATTATAGTCACCCCAGCTAAATTAGAAGAAT HS_haplotype2 TCATAAGCAGCAGCTGGGACATAGCCTTCATTATAGTCACCCCAGCTAAATTAGAAGAAT **************************** ******************************* HS_haplotype1 TAGGAGTCAGATGGTTGACTCTTCAATAATTTATTTCCTGAATATACGTGAGGTTGAGCT HS_assemblymutate_np1212 TAGGAGTCAGATGGTTGACTCTTCAATACTTTATTTCCTGAATATACGTGAGGTTGAGCT HS_haplotype2 TAGGAGTCAGATGGTTGACTCTTCAATACTTTATTTCCTGAATATACGTGAGGTTGAGCT **************************** ******************************* HS_haplotype1 GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA HS_assemblymutate_np1212 GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA HS_haplotype2 GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA ************************************************************ HS_haplotype1 TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCTTTTGCTGCTATGGCCAG HS_assemblymutate_np1212 TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCTTTTGCTGCTATGGCCAG HS_haplotype2 TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCCTCTGCTGCTATGGCCAG ****************************************** * *************** HS_haplotype1 AGCAAAATCTACTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTGGA HS_assemblymutate_np1212 AGCAAAATCTCCTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTGGA HS_haplotype2 AGCAAAATCTCCTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTAGA ********** ********************************************** ** HS_haplotype1 GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA HS_assemblymutate_np1212 GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA HS_haplotype2 GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA ************************************************************ HS_haplotype1 TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT HS_assemblymutate_np1212 TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT HS_haplotype2 TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT ************************************************************ HS_haplotype1 TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGATTTAAAACAA HS_assemblymutate_np1212 TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGATTTAAAACAA HS_haplotype2 TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGATTTAAATCAA ******************************************************** *** HS_haplotype1 AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG HS_assemblymutate_np1212 AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG HS_haplotype2 AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG ************************************************************ HS_haplotype1 TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA HS_assemblymutate_np1212 TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA HS_haplotype2 TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA ************************************************************ HS_haplotype1 TTGGGTACCCAAGTAAATGTTCATTTGTTCTGCGTCCTGGCCCCATTAGTTTAAGTAGCT HS_assemblymutate_np1212 TTGGGTACCCAAGTAAATGTTCATTTGTTCTGCGTCCTGGCCCCATTAGTTTAAGTAGCT HS_haplotype2 GTGGGTACCCAAGTAAATGTTCATTTGTTCTACGTCCTGGCCCCATTAGTTTAAGTAGCT ****************************** **************************** HS_haplotype1 GGAAGGGCCTGCACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA HS_assemblymutate_np1212 GGAAGGGCCTGCACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA HS_haplotype2 GGAAGGGCCTGAACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA *********** ************************************************ HS_haplotype1 TTGTCTCCAGGCCCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA HS_assemblymutate_np1212 TTGTCTCCAGGCCCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA HS_haplotype2 TTGTCTCCAGGCTCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA ************ *********************************************** HS_haplotype1 CACAAGCAGTGGCTGTCTGTGGTCTTAGACCCCGGGGTTTTCATGTAGGTCTCTTGTGCC HS_assemblymutate_np1212 CACAAGCAGTGGCTGTCTGTGGTCTTAGACCCCGGGGTTTTCATGTAGGTCTCTTGTGCC HS_haplotype2 CACAAGCAGTGGCTGTCTGTGGTCTAAGACCCCGGGGTTATCAAGTAGGTCTCTTGTGCC ************************* ************* *** **************** HS_haplotype1 CTGAACGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC HS_assemblymutate_np1212 CTGAACGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC HS_haplotype2 CTGAAGGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC ***** ****************************************************** HS_haplotype1 TGGGGCTTACCGAAGGGAAGAGATTTCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA HS_assemblymutate_np1212 TGGGGCTTACCGAAGGGAAGAGATTCCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA HS_haplotype2 TGGGGGTAACAGAAGGGAAGAGATTCCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA ***** * ** ************** ********************************** HS_haplotype1 CGGTGGCATTAGAGAATGGGGACTAGTCTGGACGAGTAGTGCTGAGTGAACCACCCCAGC HS_assemblymutate_np1212 CGGTGGCATTAGAGAATGGGGACTACTCTGGACGAGTAGTGCTGAGTGAACCAGCCCAGC HS_haplotype2 CGGTGGCATTAGAGAATGGGGACTACTCTGGACGAGTAGTGCTGAGTGAACCAGCCCAGC ************************* *************************** ****** HS_haplotype1 AGGGATAGAGACATATCTGGTCTGGGCGGAACTTGGGTTCCACAACCCCGTCTGGGCTGA HS_assemblymutate_np1212 AGGGATAGAGACATATCTGGTCTGGGAGGAACTTGGGTTCCACAACCCCGTCTGGGCTGA HS_haplotype2 AGGGATAGAGACATATCTGGTCTGGGAGGAACTTGGGTTCCACAACCCCGTCTGGGCTGA ************************** ********************************* HS_haplotype1 GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCGTTTTTGACC HS_assemblymutate_np1212 GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCATTTTTGACC HS_haplotype2 GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCATTTTTGACC ************************************************** ********* HS_haplotype1 TTACTATCTTCCAAGTGCATTAGTATTGGATCTACTAAGAACATTTACTAGTTCCAGCCC HS_assemblymutate_np1212 TTACTATCTTCCAAGTGCATTAGTATTGGATCTGCTAAGAACATTTACTAGTTCCAGCCC HS_haplotype2 TTACTATCTTCCAAGTGCATTAGTATTGGATCTGCTAAGAACATTTACTAGTTCCAGCCC ********************************* ************************** HS_haplotype1 ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA HS_assemblymutate_np1212 ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA HS_haplotype2 ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA ************************************************************ HS_haplotype1 ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT HS_assemblymutate_np1212 ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT HS_haplotype2 ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT ************************************************************ HS_haplotype1 CCATCTGAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAAGTTTCAT HS_assemblymutate_np1212 CCATCTGAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAAGTTTCAT HS_haplotype2 CCATCTTAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAAGTTTCAT ****** ***************************************************** HS_haplotype1 TGTCTACATGGGGATCCCAAAAAATTGGGATTAGTATGTATCTAAAAATGAGACTGAAGG HS_assemblymutate_np1212 TGTCTACATGGGGATCCCAAAAAATTGGGATTAGTATGTATCTAAAAATGAGACTGAAGG HS_haplotype2 TGTCTACATGGGGATCCAAAAAAATTGGGATTAGTATGTATCTAAAAATGAGACTGAAGG ***************** ****************************************** HS_haplotype1 TCTCCTGTCCAGTCAGACAAAATACTAGCCACCATAGGTTTCAAGAGTAGCGATCTTTTC HS_assemblymutate_np1212 TCTCCTGTCCAGTCAGACAAAATACTAGCCACCATAGGTTTCAAGAGTAGGGATCTTTTC HS_haplotype2 TCTCCTGTCCAGTCAGACAAAATACTAGCCACCATAGGTTTCAAGAGTAGGGATCTTTTC ************************************************** ********* HS_haplotype1 TTTTCTTCTCTCTGCGCCTAACAAAACTATATGAGACCTCCAGAACTTCTCAGCTCATCC HS_assemblymutate_np1212 TTTTCTTCTCTCTGCGCCTAACAAAACTATATGAGACCTCCAGAACTTCTCAGCTCATCC HS_haplotype2 TTTTCTTCTCTCTGCGCCTAGCAAAACTATATGAGAGCTCCAGAACTTCTCAGCTCATCC ******************** *************** *********************** HS_haplotype1 TCATGTGTGGAACCATGTGGCTGGCGGTGAAAACTGACTCAAACGTCTAGAAATAAGCAC HS_assemblymutate_np1212 TCATGTGTGGAACCATGTGGCTGGCGGTGAAAACTGACTCAAACGTCTAGAAATAAGCAC HS_haplotype2 TCATGTGTGGATCGATGTGGCTGGCGGTGAAAACTGACTTAAACGTCTAGAAATAAGCAC *********** * ************************* ******************** HS_haplotype1 ACTTACATATCCGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC HS_assemblymutate_np1212 ACTTACATATCCGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC HS_haplotype2 ACTTACATATCAGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC *********** ************************************************ HS_haplotype1 TGGAATGAACCTTCAGTCGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT HS_assemblymutate_np1212 TGGAATGAACCTTCAGTCGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT HS_haplotype2 TGGAATGAACCTTCAGTGGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT ***************** ****************************************** HS_haplotype1 CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAATAGGACTTTGCTTGTTATCA HS_assemblymutate_np1212 CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAATAGGACTTTGCTTGTTATCA HS_haplotype2 CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAAAAGGACTTTGCTTGTTATCA **************************************** ******************* HS_haplotype1 GAACTCCTCATAATACAAATGCCACTTCACTTGAAATACGCACGTTTTTATACATATGGG HS_assemblymutate_np1212 GAACTCCTCATAATACAAATGCCACTTCACTTGAAATACGCACGTTTTTATACATATGGG HS_haplotype2 TAACTCCTCATAATACAAATGCCACTTCACTTGGAATACGCACGTTTTTATACATATGGG ******************************** ************************** HS_haplotype1 CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT HS_assemblymutate_np1212 CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT HS_haplotype2 CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT ************************************************************ HS_haplotype1 TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTTGAA HS_assemblymutate_np1212 TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTTGAA HS_haplotype2 TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTTGAA ************************************************************ HS_haplotype1 TTTTGAAAGGCAGTAGCAAGAAATGGCAGATTGGTGGCCTCGCTAATTCACTTTGGAACT HS_assemblymutate_np1212 TTTTGAAAGGCAGTAGCAAGAAATGGCAGATTGGTGGCCTCGCTAATTCACTTTGGAACT HS_haplotype2 TTTTGAAAGGCAGTAGCAAGAAATGGCAGATTGGTGGCCTCGCTAATTCACTTTGGAACC *********************************************************** HS_haplotype1 CCGGCCTGGGTCCTTGTGTGCCAGGGAGCCACTGTTAATATGGGCCGGCCGCTAATATTT HS_assemblymutate_np1212 CCGGCCTGGGTCCTTGTGTGCCAGGGAGCCACTGTTAATATGGGCCGGCCGCTAATATTT HS_haplotype2 CCGGCCTGGGTCCTTGTGTGCCAGGGAGCCACTGTTAATATGGGCCGGCCGCTAATATTG *********************************************************** HS_haplotype1 TATCTCACTTTGTATTCCTCACCTAGAAAATAGTAGGACTGACAAACCCCGCCCGCCCTT HS_assemblymutate_np1212 TATCTCACTTTGTGGTCCTCACCTACAAAAGGGTAGGACTGACAAACCCCGCCCGCCCTT HS_haplotype2 TATCTCACTTTGTGGTCCTCACCTACAAAAGGGTAGGACTGACAAACCCCGCCCGCCCTT ************* ********** **** **************************** HS_haplotype1 GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACTCCCCAGATTGATTA HS_assemblymutate_np1212 GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACCCCCCAGATTGATTA HS_haplotype2 GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACCCCCCAGATTGATTA ********************************************* ************** HS_haplotype1 CAGCGTTAGGATGTATCCCAACATCTGAATTGCCGATAACAAAACAGGCTTCTATCAGCC HS_assemblymutate_np1212 CAGCTTTAGGATGTATCCCAACATCTGAATTGCCGATAACAAAACAGGCTTCTATCAGCC HS_haplotype2 CAGCTTTAGGATGTATCCCAACATCTGAATTGCCCATAACAAAACAGGCTTCTATCAGCC **** ***************************** ************************* HS_haplotype1 TCCTGTGACAGGTGCTTGAAGCTCTATCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC HS_assemblymutate_np1212 TCCTGTGACAGGTGCTTGAAGCTCTATCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC HS_haplotype2 TCCTGTGACAGGTGCTTGAAGCTCTACCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC ************************** ********************************* HS_haplotype1 ACGCCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGAGCATCTTGAT HS_assemblymutate_np1212 ACGCCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGACCATCTTGAT HS_haplotype2 ACGTCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGACCATCTTGAT *** ********************************************** ********* HS_haplotype1 TTAAGGCTCACTTAAATACATACTACCCTCCCATGCTAAAGCCACTCTCAAAAATCTGCT HS_assemblymutate_np1212 TTAAGGCTCACTTAAATACATACTACCTTCCCATGCTAAAGCCACTCTCAAAAATCTGCT HS_haplotype2 TTAAGGCTCACTTAAATACATACTACCTTCCCATGCTAAAGCCACTCTCAAAAATCTGCT *************************** ******************************** HS_haplotype1 CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA HS_assemblymutate_np1212 CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA HS_haplotype2 CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA ************************************************************ HS_haplotype1 ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC HS_assemblymutate_np1212 ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC HS_haplotype2 ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC ************************************************************ HS_haplotype1 AGTGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGTCCCTGCCTGTT HS_assemblymutate_np1212 AGGGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGCCCCTGCCTGTT HS_haplotype2 AGGGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGCCCCTGCCTGTT ** ********************************************* *********** HS_haplotype1 CAAGGGGCGAGCCCGGCTCATGCTATTATATAGCATCTCAAGGTCCATTCTAGAAGGGGC HS_assemblymutate_np1212 CAAGGGGCGAGCCCGGCTCATGCTATTTTATAGCATCTCAAGGCCCATTCTAGAAGGGGC HS_haplotype2 CAAGGGGCGAGCCCGGCTCATGCTATTTTATAGCATCTCAAGGCCCATTCTAGAAGGGGC *************************** *************** **************** HS_haplotype1 TTCACAACACACGTGGATGAGAAATATAGCCTGAAACCTCTTCTTTGGAGGCTGAGTTCA HS_assemblymutate_np1212 TTCACAACACACGTGGATGAGAAATATAGCCTGAAACCTCTTCTTTGGAGCCTGAGTTCA HS_haplotype2 TTCACAACACACGTGGATGAGAAATATAGCCTGAAACCTCTTCTTTGGAGCCTGAGTTCA ************************************************** ********* HS_haplotype1 ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCTGAGT HS_assemblymutate_np1212 ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCTGAGT HS_haplotype2 ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCAGAGT ******************************************************* **** HS_haplotype1 GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT HS_assemblymutate_np1212 GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT HS_haplotype2 GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT ************************************************************ HS_haplotype1 AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA HS_assemblymutate_np1212 AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA HS_haplotype2 AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA ************************************************************ HS_haplotype1 TAAACAATGGTGGGAGCAATCCGGATCTTTTAATAGGATATGACTTAAATGACAGTTGGC HS_assemblymutate_np1212 TAAACAATGGTGGGAGCAATCCGGATCTTTTAATAGGATATGACTTAAATGACAGTTGGC HS_haplotype2 TAAACAATGGTGGGAGCAATCCGGATCTTTCAATAGGATATGACTTAAATGACAGTTGGC ****************************** ***************************** HS_haplotype1 TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACTTGGTACAAGTG HS_assemblymutate_np1212 TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACATGGTACAAGTG HS_haplotype2 TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACATGGTACAAGTG ************************************************ *********** HS_haplotype1 CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCACCCAAATAATACCTGAGCCAAGAGG HS_assemblymutate_np1212 CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCTCCCAAATCATACCTGAGCCAAGAGG HS_haplotype2 CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCTCCCAAATCATACCTGAGCCAAGAGG ********************************** ******* ***************** HS_haplotype1 CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG HS_assemblymutate_np1212 CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG HS_haplotype2 CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG ************************************************************ HS_haplotype1 TGTAAAATATCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCCTTCTAAAATTAACA HS_assemblymutate_np1212 TGTAAAATATCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCCTTCTAAAATTAACA HS_haplotype2 TGTAAAATATCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCCTTCTAAAATTAACA ************************************************************ HS_haplotype1 TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT HS_assemblymutate_np1212 TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT HS_haplotype2 TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT ************************************************************ HS_haplotype1 ATATAGAATTTTGGGAGTGATGACTACAAAAAAAGAGAAACACACTTTCCAAATTGAGAT HS_assemblymutate_np1212 ATATACGATTTTGGGAGTGATGACTACAAAAAAAGAGAAACACACTTTCTAAATTGAGAT HS_haplotype2 ATATACGATTTTGGGAGTGATGACTACAAAAAAGGAGAAACACACTTTCTAAATTGAGAT ***** ************************** *************** ********** HS_haplotype1 GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT HS_assemblymutate_np1212 GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT HS_haplotype2 GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT ************************************************************ HS_haplotype1 GCAGTAATCTTATATTCTTTGCTTAGCTGTTCCAACATACTTTTATAAGAAAAGGACAAA HS_assemblymutate_np1212 GCAGTAATCTTATATTCTTTGCTTAGCTGTTCCAACATACTTTTATAAGTAAAGGACAAA HS_haplotype2 GCAGTAATCTTATATTCTTTGCTCAGCTGTTCCAACATACTTTTATAAGTAAAGGACAAA *********************** ************************* ********** HS_haplotype1 TAATGAGCTTAAAGGATCGCAGCCCCCGAGGACATCGTTAGGTCTCTCCATTGGCCTTTT HS_assemblymutate_np1212 TAATGTGCTTAAAGGATCACAGCCCCCGAGGACATCGTTAGGTCTCTCCCTTGGCCTTTT HS_haplotype2 TAATGTGCTTAAAGGATCACAGCCCCCGAGGACATCGTTAGGTCTCTCCCTTGGCCTTTT ***** ************ ****************************** ********** HS_haplotype1 TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT HS_assemblymutate_np1212 TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT HS_haplotype2 TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT ************************************************************ HS_haplotype1 GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT HS_assemblymutate_np1212 GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT HS_haplotype2 GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT ************************************************************ HS_haplotype1 ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA HS_assemblymutate_np1212 ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA HS_haplotype2 ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA ************************************************************ HS_haplotype1 TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTCTATGTAACAAATAA HS_assemblymutate_np1212 TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTCTATGTAACAAATAA HS_haplotype2 TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTGTATGTAACAAACAA ********************************************* *********** ** HS_haplotype1 TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA HS_assemblymutate_np1212 TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA HS_haplotype2 TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA ************************************************************ HS_haplotype1 GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA HS_assemblymutate_np1212 GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA HS_haplotype2 GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA ************************************************************ HS_haplotype1 GTGCTAATATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG HS_assemblymutate_np1212 GTGCTACTATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG HS_haplotype2 GTGCTACTATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG ****** ***************************************************** HS_haplotype1 TCTCTACAAGCCACCGCATGGTGGCGGACTTTCAGACTCGGGGAGGTGTTTTTAAGACCA HS_assemblymutate_np1212 TCTCTACAAGCCACGGCATGGTGGCGGACTTTCAGACTCGGGGAGGTGTTTTTAAGACCA HS_haplotype2 TCTCTACAAGCCACGGCATGGTGGCGGACTTTCAGACTCGGGGAGGTGTTTTTAAGACCA ************** ********************************************* HS_haplotype1 AAAGAGAAGCCTCATTATGACTCTTGTATTTATAAATGCAACCATACTTGAGAATCCCAT HS_assemblymutate_np1212 AAAGAGAAGCCTCATTATGACTCTTGTATTTATAAATGCAACCATACTTGAGAATCCCAT HS_haplotype2 AAAGAGAAGCCTCATTATGACTCTTGTATTTATAAATGCAACCATACTTGAGAATCCCAT ************************************************************ HS_haplotype1 TTTATTGTCCTTCGATTGAGAGGTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGCCAGT HS_assemblymutate_np1212 TTTATTGTCCTTCGATTGAGAGGTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGCCAGT HS_haplotype2 TTTATTGTCCTTCGATTGAGAGGTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGCCAAT ********************************************************** * HS_haplotype1 GTGTAGGAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTGGAATGGAA HS_assemblymutate_np1212 GTGTAGGAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTGGAATGGAA HS_haplotype2 GTGTAGAAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTTGATTGGAA ****** ******************************************** ** ***** HS_haplotype1 AGGCTGGGCCACTATAAAATCCCTTCGATCTATTGAGTCAGTTAGATAAATTTTAGAATT HS_assemblymutate_np1212 AGGCTGGGCCAGTATAAAATCCCTGCGATCTATTGAGTCAGTTAGATAAATTTTAGAATT HS_haplotype2 AGGCTGGGCCAGTATAAAATCCCTGCGATCTATTGAGTCAGTTAGATAAATTTTAGAATT *********** ************ *********************************** HS_haplotype1 CCTCAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAATGGACCTC HS_assemblymutate_np1212 CCTCAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAAGGGACCTC HS_haplotype2 CCTCAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAAGGGACCTC **************************************************** ******* HS_haplotype1 ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCTTTTTAATTTACTACATAGGAGCTTG HS_assemblymutate_np1212 ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCCTTTCAATTTACTATATAGGAGCTTG HS_haplotype2 ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCCTTTCAATTTACTATATAGGAGCTTG ********************************** *** ********* *********** HS_haplotype1 CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGCTTCATTTGT HS_assemblymutate_np1212 CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGTTTCATTTGT HS_haplotype2 CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGTTTCATTTGT ************************************************** ********* HS_haplotype1 GGCAAGATATACCATGACTAGTCATACAAATTCTTCTAGTTATAAGTGCTCACAATTTCT HS_assemblymutate_np1212 GGCAAGATATACCATGACTAGTCATACAAAGTCTTCTAGTTATAAGTGCTCACAATTTCT HS_haplotype2 GGCAAGATATACCATGACTAGTCATACAAAGTCTTCTAGTTATAAGTGCTCACAATTTCT ****************************** ***************************** HS_haplotype1 AAGACAGCAACAACACCGCCACTTTTCTGAGGCTGTCTTACAGGCACTCAGGAAACATCC HS_assemblymutate_np1212 AAGACAGCAACAACACCGCCACTTTTCTGAGGCTGTCTTACAGGCACTCAGGAAACATCC HS_haplotype2 AAGACAGCAACAACACCGCCACTTTTCTGAGGCTGTCTTACAGGCACTCAGGAAACATCA *********************************************************** HS_haplotype1 GAGGCAGACTATATTCAAACTCCCTTAACTCCATAATGTTTTAAGCAAAAAGTGAAGCTG HS_assemblymutate_np1212 GAGGCAGACTATATTCAAACTCCCTTAACTCCATAATGTTTTAAGCAAAAAGTGAAGCTG HS_haplotype2 GAGGCAGACTATATTCAAACTCCCTTAACTCCATATTGTTTTAAGCAAAAAGTGAAGCTG *********************************** ************************ HS_haplotype1 GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT HS_assemblymutate_np1212 GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT HS_haplotype2 GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT ************************************************************ HS_haplotype1 GTTTAATAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGCGGGAGTTCTCTCGG HS_assemblymutate_np1212 GTTTATTAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGCGGGAGTTCTCTCGG HS_haplotype2 GTTTATTAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGTGGGAGATCCCTCGG ***** *************************************** ***** ** ***** HS_haplotype1 CTCTTCTGGCTTGCTCCCCATAGATATAGTTTCCATGTAAAATAACTGCCAGCTGGCCAG HS_assemblymutate_np1212 CTCTTCTTGCTTGCTCCCAATAGATATAGTTTCCATGTAAAATAACTGCCAGCTGGCCAG HS_haplotype2 CTCTTCTTGCTTGCTCCCAATAGATATAGTTTCCATGTAAAATAACTGCCAGCTGGCCAG ******* ********** ***************************************** HS_haplotype1 ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT HS_assemblymutate_np1212 ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT HS_haplotype2 ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT ************************************************************ HS_haplotype1 CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC HS_assemblymutate_np1212 CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC HS_haplotype2 CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC ************************************************************ HS_haplotype1 TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT HS_assemblymutate_np1212 TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT HS_haplotype2 TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT ************************************************************ HS_haplotype1 TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATCTTTGAGCAGCGGGTGGT HS_assemblymutate_np1212 TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATCTTTGAGCAGCGGGTGGT HS_haplotype2 TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATTTTTGAGCAGCTGGTGGT ****************************************** ********** ****** HS_haplotype1 GTTGGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATTTTACCCATTT HS_assemblymutate_np1212 GTTGGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATTTTACCCATTT HS_haplotype2 GTTGGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATCTTACCCATTT ************************************************* ********** HS_haplotype1 CCAGCCTGGGTGCAGACCCCCCCCAGCCTGTGTTTGGAGGTTCTGGCTCCACATCAGAGG HS_assemblymutate_np1212 CCAGCCTGGGTGCAGACCCCCCCCAGCCTGTGTTTGGAGGTTCTGGCTCCACATCAGAGG HS_haplotype2 CCAGCCTGGGTGCAGACCCCCCCCAGCCTGGGTTTGGAGGTTCTGGCTCCACATCAGAGG ****************************** ***************************** HS_haplotype1 CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT HS_assemblymutate_np1212 CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT HS_haplotype2 CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT ************************************************************ HS_haplotype1 GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGTAGCTGCACTGCAGGCTGAGCTATA HS_assemblymutate_np1212 GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGTAGCTGCACTGCAGGCTGAGCTATA HS_haplotype2 GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGGAGCTGCACTGCAGGCTGAGCTATA *********************************** ************************ HS_haplotype1 AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA HS_assemblymutate_np1212 AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA HS_haplotype2 AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA ************************************************************ HS_haplotype1 CACGACCCACAGGAGAGATTTTCAAAAAGAATTTTTTGTCTTCAAAATAATATTTAATCC HS_assemblymutate_np1212 CACGACCCACAGGAGAGATTTTCAAAAAGAATTTTTTGTCTTCAAAATAATATTTAATCC HS_haplotype2 CACGACCCACAGGAGAGATTTTCAAAAAGAATTTTTTGTCTTCATAATAATATTTAATCC ******************************************** *************** HS_haplotype1 ATGAATTTTAGATGTTCTCTTCCTGGGACAAAAGTTGGCAGAAGATAAATTTAACATCCC HS_assemblymutate_np1212 ATGAATTTTAGATGTTCTCTACCTGGGACAAAAGTTGGCAGAAGATAAATTTAACAGCCC HS_haplotype2 ATGAATTTTAGATGTTCTCTACCTGGGACAAAAGTTGGCAGAAGATAAATTTAACAGCCC ******************** *********************************** *** HS_haplotype1 CACTTCAAATACCCTTGGCAGGAACACACCGTTTCTTAATATCTGCAACTGCAGCTAGCG HS_assemblymutate_np1212 CACTTCAAATACCCTTGGCCGGAACACACCGTTTCTTAATATCTGCAACTGCAGCAAGCG HS_haplotype2 CACTTCAAATACCCTTGGCCGGAACACACCGTTTCTTAATATCTGCAACTGCAGCAAGCG ******************* *********************************** **** HS_haplotype1 GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT HS_assemblymutate_np1212 GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT HS_haplotype2 GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT ************************************************************ HS_haplotype1 CTCAATTATTGGACGCTGGCTAAGCTTCTTGAGACATATGTGGTTGTTTTTCTCCCAGTA HS_assemblymutate_np1212 CTCAATTATTGGACGCTGGCTAAGCTTTTTGAGACATATGTGGTTGTTTTTCTCCCAGTA HS_haplotype2 CTCAATTATTGGACGCTGGCTAAGCTTTTTGAGACATATGTGGTTGTTTTTCTCCCAGTA *************************** ******************************** HS_haplotype1 ACAAAGGAAATAAAGTTAACTTGGGGGATTGATCGCCCTATGTATTTTAAAACTTGAAGA HS_assemblymutate_np1212 ACAAAGGATATAAAGTTAACTTGGGGGATTGATCACCCTATGTATTTTAAAACTTGAAGA HS_haplotype2 ACAAAGGATATAAAGTTAACTTGGGGGATTGATCACCCTATGTATTTTAAAACTTGAAGA ******** ************************* ************************* HS_haplotype1 CCTTTTGCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTGCCTATCAGACATGGAAAC HS_assemblymutate_np1212 CCTTTTCCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTACCTATCAGACATGGAACC HS_haplotype2 CCTTTTCCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTACCTATCAGACATGGAACC ****** ********************************** **************** * HS_haplotype1 TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG HS_assemblymutate_np1212 TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG HS_haplotype2 TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG ************************************************************ HS_haplotype1 CAATCAGGTCTCCCTTCTTCCTGGGAATCAAACCACAGCTCCCCCGTTACTCAATATATT HS_assemblymutate_np1212 CAATCAGGTCTCCCTTCTTCCTGGGGATCAAACCACAGCTCCCCCGTTCCTCAATATATT HS_haplotype2 CAATCAGGTCTCCCTTCTTCCTGGGGATCAAACCACAGCTCCCCCGTTCCTCAATATATT ************************* ********************** *********** HS_haplotype1 TTACCTCATCCCACCCCGCGGTGCAGTCACCATGGATATTTGCAAAGTGACTGCTTTTGA HS_assemblymutate_np1212 TTACCTTATCCCACCCCTCGGTGCAGTCACCATGGATATTTGCAAAGTGACTGCTTTTGA HS_haplotype2 TTACCTTATCCCACCCCTCGGTGCAGTCACCATGGATATTTGCAAAGTGACTGCTTTTGA ****** ********** ****************************************** HS_haplotype1 GGCACAGTAACTTTCTGGGCTATGAGTAAGTATTTTCTTAACATCACATTGCGGAGCACC HS_assemblymutate_np1212 GGCACAGTAACTTTCTGGGCTATGAGTAAGTATTTTCTTAACATCACATTGCGGAGCACC HS_haplotype2 GGCACAGTAACTTTCTGGGCTATGAGTAAGTATTTTCTTAACATCACATTGCTGAGCACC **************************************************** ******* HS_haplotype1 ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGCGGGCTCC HS_assemblymutate_np1212 ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGCGGGCTCC HS_haplotype2 ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGCGGGCTCC ************************************************************ HS_haplotype1 ACACTGTTATATTTGAGACATTCTCAAGCCTAGCCATGAAGTTCTTTGTTTTACAAAAAC HS_assemblymutate_np1212 ACACTGTTATATTTGAGACATTCTCAAGCCTAGCCATGAAGTTCTTTGTTTCAAAAAAAC HS_haplotype2 ACACTGTTATATTTGAGACATTCTCCAGCCTAGCCATGAAGTTCTTTGTTTCAAAAAAAC ************************* ************************* * ****** HS_haplotype1 GGGGGCTCAGTTCTAAGAGGCTTATTTAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG HS_assemblymutate_np1212 GGGGGCTCAGTTCTAAGAGGCTTATTGAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG HS_haplotype2 GGGGGCTCAGTTCTAAGAGGCTTATTGAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG ************************** ********************************* HS_haplotype1 GCCTATCTGCCTACCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT HS_assemblymutate_np1212 GCCTATCTGCCTATCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT HS_haplotype2 GCCTATCTGCCTATCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT ************* ********************************************** HS_haplotype1 TCAAGCCAAGCCGGATATTAACACACACTGGAGGCTGCTACCCATAACACACCCTGACAT HS_assemblymutate_np1212 TCAAGCCAAGCCGGATATTAACACACACTGGAGGCTGCTACCCATAACACACCCTGACAT HS_haplotype2 TCAAGCCAAGCCGGATATTAACACACACAGGAGGCTGCTACCCATAACACACCCTGACAT **************************** ******************************* HS_haplotype1 AACTTAAGGCCCCTTATCATTAACCAAGCTAATACTGTTCTAAGTGCTGCAGTGGCCAGC HS_assemblymutate_np1212 AACTTAAGGCCCCTTATCATTAACCAAGCTAATACTGTTCTAAGTGCTGCAGTGGCCAGC HS_haplotype2 AACTTCAGCCCCCTTATCATTAACCAAGCTAATCCTGTTCTAAGTGCTGCAGTGGCCAGC ***** ** ************************ ************************** HS_haplotype1 CAAAAGGGTTGCTGAGACCAGCCAAAATAACACCAAAGAAATAATCCAGTGCTCCAGCAA HS_assemblymutate_np1212 CAAAAGGGTTGCTGAGACCAGCAAAAATAACACCAAAGAAATAATCCAGTGCTCCAGCAA HS_haplotype2 CAACAGGGTTGCTGAGACCAGCAAAAATAACACCAAAGAAATAATCCAGTGCTCCAGCAA *** ****************** ************************************* HS_haplotype1 GGCATCTCCACAACAAGGCCTGTTCTTTCTTAGTTAAAAATGGCAATATCATTATACAAA HS_assemblymutate_np1212 GGCATCTCCACAACAAGGCCTGTTCTTTCTTACTTAAAAATGGCAATATCATTATACAAA HS_haplotype2 CGCATCTCCACAACAAGGCCTGTTCTTTCTTACTTAAAAATGGCAATATCATTATACAAA ******************************* *************************** HS_haplotype1 AAGAGTTAATCCCAGGCTGGGGGTGATCTATTTGTGATCCTTCCCCGGCCTCCCAGGCTC HS_assemblymutate_np1212 AAGAGTTAATCCCAGGCTGGGGGTAATCTATTTGTGATCCTTCCCCGGCCTCCCAGGCTC HS_haplotype2 AAGAGTTAATCCCAGGCTGGGGGTAATCTATTTGTGATCCTTCCCCGGCTTCCCAGGCTC ************************ ************************ ********** HS_haplotype1 ACTGCAGAGATAAAAGAAAGATTTGTAGATGAGGCATGGTGATTCGGTTGTAGTTGCCCT HS_assemblymutate_np1212 ACTGCAGAGATAAAAGAAAGATTTGTAGATGAGGCATGCTGATTCGGTTGTAGTTGCCCT HS_haplotype2 ACTGCAGAGATAAAAGAAAGATTTGTAGATGAGGCATGCTGATTCGGTTGTAGTTGCCCT ************************************** ********************* HS_haplotype1 CCTGTAGCTCATCCAAACAAAACCTCTTTCATATAATTGGCAGGCATCTATAGCATCAAT HS_assemblymutate_np1212 CCTGTAGCTCATCCAAACAAAACCGCTTTCATATAATTGGCAGGCATCTATAGTATCAAT HS_haplotype2 CCTGTAGCTCATCCAAACAAAACCGCTTTCATATAATTGGCAGGCATCTATAGTATCAAT ************************ **************************** ****** HS_haplotype1 AGTCCCATAAGTGATACAAACCAGGCTAGCTGACCCTCCTCCCGAATCACGCTCCAGTGA HS_assemblymutate_np1212 AGTTCCATAATTGATACAAACCAGGCTAGGTGACCCTCCTCCCGAATCACGCTCCAGTGA HS_haplotype2 AGTTCCATAATTGATACAAACCAGGCTAGGTGACCCTCCTCCCGAATCACGCTCCAGTGA *** ****** ****************** ****************************** HS_haplotype1 GTAGCCCAGGGTCGTGAGTGCTGTGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA HS_assemblymutate_np1212 GTAGCCCAGGGTCGTGAGTGCTGCGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA HS_haplotype2 GTAGCCCAGGGTCGTGAGTGCTGCGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA *********************** ************************************ HS_haplotype1 TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG HS_assemblymutate_np1212 TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG HS_haplotype2 TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG ************************************************************ HS_haplotype1 GACATCTCTATGAGAAGGGGTGGGACTCCACTGGACCCAGGGTCCCACAGGCTGTCTTGT HS_assemblymutate_np1212 GACATCTCTATGAGAAGGGGTGAGACTCCACTGGACCCAGGGTCCCACAGGCTGTCTTGT HS_haplotype2 GACATCTCTATGAGAAGGGGTGAGACTCCACTGGACCCAGGGTCCCACAGGCTGTCTTGT ********************** ************************************* HS_haplotype1 CCCATAGACAGGGCTCTCACCACATCAACTTGCCTGATTAAGAGGCAGAGCAAACTAGAG HS_assemblymutate_np1212 CCCATAGACAGGGCTCTCACCACTTCAACTGGCCTGATTAAGAGGCAGAGCATACTAGAG HS_haplotype2 CCCATAGACAGGGCTCTCACCACTTCAACTGGCCTGATTAAGAGGCAGAGCATACTAGAG *********************** ****** ********************* ******* HS_haplotype1 TGCCTTTTCTTGAGCCAGAGTAATAGGCATACTTATCTCATAGGTGAAAAAACTCAGCCT HS_assemblymutate_np1212 TGCCTTTTCTTGAGCCAGAGTAATAGGCCTACTTATCTCATAGGTGAAAAAACTCAGCCT HS_haplotype2 TGCCTTTTCTTGAGCCAGAGTAATAGGCCTACTTATCTCATAGGTGAAAAAACTCAGCCT **************************** ******************************* HS_haplotype1 CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA HS_assemblymutate_np1212 CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA HS_haplotype2 CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA ************************************************************ HS_haplotype1 GGGTAATTGTGGTAGAGGAGTCAGGAGGGTTTCTCCCTCAAAAGAGGTGCTTGAGGCATG HS_assemblymutate_np1212 GGGTAATTGTGGTAGAGGAGTCAGGAGGGTTTCTCCCTCAAAAGAGGTGCTTGAGGCATG HS_haplotype2 GGGTAATTGTGGTAGAGGAGTCAGTAGGGTTTCTCCCACAAAAGAGGTGCTTGAGGCATG ************************ ************ ********************** HS_haplotype1 CTCAATTTGGCACCAGAAGTCAAAAATAAAATAAACAATGTTGAATAACTGCCAACCCCT HS_assemblymutate_np1212 CTCAATTTGGCACCAGAAGTCAAAAATAAAATAAACAATGTTGAATAACTGCCAACCCCT HS_haplotype2 CTCAATTTGGCACCACAAGTCAAAAATAGAATAAACAATGTTGAATAACTGCCAACCCCT *************** ************ ******************************* HS_haplotype1 TTTCCAGCATGAACATAGTGATAATGGTGCCAGACCCCATAATGGGACCACGAAGAAACA HS_assemblymutate_np1212 TTTCCAGCATGAACATAGTGATAATGGTGCCAGACCCCATAATGGGACCACGAAGAAACA HS_haplotype2 TTTCCAGCATGAACATAGAGATAATGGTGCCAGACCCCATAATGGGACCACAAAGAAACA ****************** ******************************** ******** HS_haplotype1 TTGTACTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG HS_assemblymutate_np1212 TTGTACTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG HS_haplotype2 TTGTAGTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG ***** ****************************************************** HS_haplotype1 GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT HS_assemblymutate_np1212 GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT HS_haplotype2 GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT ************************************************************ HS_haplotype1 TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG HS_assemblymutate_np1212 TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG HS_haplotype2 TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG ************************************************************ HS_haplotype1 CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGAAATAATATATTGTAG HS_assemblymutate_np1212 CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGAAATAATATATTGTAG HS_haplotype2 CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGACATAATATATAGTAG ********************************************* ********* **** HS_haplotype1 GGGCAAGCCACATGGGAGAGGCGGAGAACGAGTGTGTGCAGAGTTTCATCACTGATAAAT HS_assemblymutate_np1212 GGGGAAGCCACATGGGAGAGGCGGAGAACGAGTGTGTGCAGAGTTTCATCACTGATAAAT HS_haplotype2 GGGGAAGCCACATGGGAGAGGCGGAGAAAGAGTGTGTGCAGAGTTTCATCACTGATAAAT *** ************************ ******************************* HS_haplotype1 AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAACAACCATTGGCTCTCTTAAATG HS_assemblymutate_np1212 AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAACAACCATTGGCTCTCTTAAATG HS_haplotype2 AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAAGAACCATTGGCTCTCCTAAATG ************************************** ************** ****** HS_haplotype1 GCGGGCGCGACCAGCCTGGAGAGCTGACAAATTTCATCTTGAGGTTTTGTTGGAATTGAG HS_assemblymutate_np1212 GCGGGCGCGACCAGCCTGGAGAGCTGACAAATTTCATCTTGAGGTTTTGTTGGAATTGAG HS_haplotype2 GCGGGCGCGACCAGCCTAGAGAACAGACAAATTTCATCTTGAGGTTTTGATGGAATTGAG ***************** **** * ************************ ********** HS_haplotype1 CAAATACTGGGGATTCACCTCTGAAAGGAAGTTTCAGTGCGCAGGCCTTGTTAGCTTTAG HS_assemblymutate_np1212 CAAATACTGGGGATTCACCTCTGAAAGGAAGTTTCAGTGCGCAGGCCTTGTTAGCTTTAG HS_haplotype2 CAAATACTGGGGATTCACCTCTGAAAGGAAGTTTCCGTGCGCAGGCCTTGTTATCTTTAG *********************************** ***************** ****** HS_haplotype1 TTGAGATCATGAAAATTTTTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC HS_assemblymutate_np1212 TTGAGATCATGAAAATTATTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC HS_haplotype2 TTGAGATCATGAAAATTATTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC ***************** ****************************************** HS_haplotype1 TGGGGGAGGGCCGTTCATGTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC HS_assemblymutate_np1212 TGGGGGAGGGCCGTTCATGTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC HS_haplotype2 TGGGGGAGGGCCGTTCATTTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC ****************** ***************************************** HS_haplotype1 TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT HS_assemblymutate_np1212 TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT HS_haplotype2 TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT ************************************************************ HS_haplotype1 AAGCTTGCTTGGGCTTGGAAGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGGCAAAGT HS_assemblymutate_np1212 AAGCTTGCTTGGGCTTGGAAGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGGCAAAGT HS_haplotype2 AAGCTTGCTTTGACTTGGAGGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGTCAAAGT ********** * ****** ********************************* ****** HS_haplotype1 GTTATTCTGGGAGGCATACAAGATTTTCATCCCAACTGTAAGTGACTCAGCAGAATAACT HS_assemblymutate_np1212 GTTATTCTGGGAGGCATACAAGATTTTCATCCCAACTGTAAGTGACTCAGCAGAATAACT HS_haplotype2 GTTATTCTGGGTGGCATACAAGATTTTCATCCCAAATGTAAGTGACTCAGCAGAATAACT *********** *********************** ************************ HS_haplotype1 GGAGGAAAAATAATAAATAATACAGGAAGAGTACCCTGCCCAGCACTCCGTCACGGAGTG HS_assemblymutate_np1212 GGAGGAAAAATAATAAATAATACAGGAAGAGTACCCTGCCCAGCACTCCGTCACGGAGTG HS_haplotype2 GGAGGAAAAATAATAAATAATTCAGGAAGAGTACCCTGCCCAGCACTCCCTCACGGAGTG ********************* *************************** ********** HS_haplotype1 TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCCGAGAGGATCA HS_assemblymutate_np1212 TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCCGAGAGGATCA HS_haplotype2 TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCGGAGAGGATCT ************************************************* ********* HS_haplotype1 GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTGATTGCCTAGGTAATAGC HS_assemblymutate_np1212 GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTGATTGCCTAGGTAATAGC HS_haplotype2 GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTTATTGCCTAGGTAATAGC ****************************************** ***************** HS_haplotype1 AATCACGCGGCGTGCCATATACATGGCTCTAAATGCTTTGAAAGTATGCTCACTGGAGAA HS_assemblymutate_np1212 AATCACGCGGCGTGCCATATACATGGCTCTAAATGCTTTGAAAGTATGCTCACTGGAGAA HS_haplotype2 AATCACGCGGCGTGCCATATACATGGCTCTAAATGCTTTGAAAGTATGCTCACTGGAGAA ************************************************************ HS_haplotype1 CAGGTTAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC HS_assemblymutate_np1212 CAGGTTAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC HS_haplotype2 CAAGTTAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC ** ********************************************************* HS_haplotype1 TCACAACCTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG HS_assemblymutate_np1212 TCACAACTTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG HS_haplotype2 TCACAACTTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG ******* **************************************************** HS_haplotype1 AGCAATGGAAAAACTGGCTGCGATTCCATCTTATTTATCATATGCGCACGTACTCAGCAC HS_assemblymutate_np1212 AGCAATGGAAAAACTGGCTGAGATTCCATTTTATTTATCATATGCGCACGTACTCAGCAC HS_haplotype2 AGCAATGGAAAAACTGGCTGAGATTCCATTTTATTTATCATATGCGCACGTACTCAGCAC ******************** ******** ****************************** HS_haplotype1 TTCTTCATCAACCCGGGCCACTAGTCTTCTTAAGATCACCGCGGAGTCCTTCGCAGCCCT HS_assemblymutate_np1212 TTCTTCATCAACCCGGGCCACTGGTCATATTAAGATCACCGCGGAGTCCTTCCCAGCCCT HS_haplotype2 TTCTTCATCAACCCGGGCCACTGGTCATATTAAGATCACCGCGGAGTCCTTCCCAGCCCT ********************** *** * *********************** ******* HS_haplotype1 TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGCGTGGGGCGCCTGTTTGC HS_assemblymutate_np1212 TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGAGTGGTGCGCCTCTTTGC HS_haplotype2 TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGAGTGGTGCGCCTCTTTGC ****************************************** **** ****** ***** HS_haplotype1 TGCGCTCTGCAGGTAACGTTTGATTGTTTCCCAACCATGAGGTTATTTAACATGTGTGCG HS_assemblymutate_np1212 TGCGCTCTGCAGGTAACGTTTGCTTGTTTCGCAACCATGAGGTTATTTAACATGTGTGCG HS_haplotype2 TGCGCTCTGCAGGTAACGTTTGCTTGTTTCGCAACCATGAGGTTATTTAACATGTGTGCG ********************** ******* ***************************** HS_haplotype1 CAACCTGGGAGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCGCCACATTGAGTCTTGTG HS_assemblymutate_np1212 CAACCTGGGCGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCCCCACATTGAGTCTTGTG HS_haplotype2 CAACCTGGGCGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCCCCACATTGAGTCTTGTG ********* ******************************** ***************** HS_haplotype1 CCTCTCTATTTATCCTGCACCAGGTGGAAGCAGGCTTCTGCAGTAGCCCTTTATTGCTCT HS_assemblymutate_np1212 CCTCTCTATTTATCCTGCACCAGCTGGAAGCAGGCTTCTGCAGTAGCCATTTATTGCTCT HS_haplotype2 CCTCTCTATTTATCCTGCACCAGCTGGAAGCAGGCTTCTGCAGTAGCCATTTATTGCTCT *********************** ************************ *********** HS_haplotype1 GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC HS_assemblymutate_np1212 GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC HS_haplotype2 GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC ************************************************************ HS_haplotype1 CTCACTTTTAAGTTAGCTGCCGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC HS_assemblymutate_np1212 CTCACTTTTAAGATAGCTGCAGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC HS_haplotype2 CTCACTTTTAAGATAGCTGCAGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC ************ ******* *************************************** HS_haplotype1 AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGTAAGGGGACAGGTGAAAACTCTTCCT HS_assemblymutate_np1212 AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGTAAGGGGACAGGTGAAAACTCTTCCT HS_haplotype2 AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGAAAGGGGACAGGTGAAAACTCTTCCT ********************************** ************************* HS_haplotype1 AGGCTTGTATAAACCAAGGGGAGCCTACGTTTTAAACCCATTATTTAAATTTAACACAGG HS_assemblymutate_np1212 AGGCTTGTATAAACCAAGGGGAGCCTAGGTTTTGAACCCATTATTTAAATTTAACACAGG HS_haplotype2 AGGCTTGTATAAACCAAGGTGAGCCTAGGTTTTGAACCCATTATTTAAATTTAACACAGG ******************* ******* ***** ************************** HS_haplotype1 GGTGCGCCCAACATCTCTTTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG HS_assemblymutate_np1212 GGTACGCCCAACATCTCTTTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG HS_haplotype2 GGTACGCCCAACATCTCTTTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG *** ******************************************************** HS_haplotype1 GAGATAATTCCTGGCCGAGTGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT HS_assemblymutate_np1212 CCGATAATTCCTGGCCGAGCGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT HS_haplotype2 CCGATAATTCCTGGCCGAGCGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT ***************** **************************************** HS_haplotype1 TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA HS_assemblymutate_np1212 TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA HS_haplotype2 TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA ************************************************************ HS_haplotype1 AACCTTCTTCTTGGTATAAATAATTCTCTTACTATGGTCTTTAATGAAAGTCCTTATAGC HS_assemblymutate_np1212 AACCTTCTTCTTGGTATAAATAATTCTCTTACTATGGTCTTTAATGAAAGTCCTTATAGC HS_haplotype2 AACCTTCTTCTTGGTATAAACAATTCTCTTACTATGGTCTTTAATGAAAGTCCTCATAGC ******************** ********************************* ***** HS_haplotype1 AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT HS_assemblymutate_np1212 AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT HS_haplotype2 AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT ************************************************************ HS_haplotype1 GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTTTAGATCTCAGC HS_assemblymutate_np1212 GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTTTAGATCTCAGC HS_haplotype2 GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTCTAGATCTCAGC ************************************************ *********** HS_haplotype1 CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACTAGAAAAGACTAGTTCCCTCCGGGT HS_assemblymutate_np1212 CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACTAGAAAAGACTAGTTCCCTCCGGGT HS_haplotype2 CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACCAGAAAAGACTAGTTCCCTCCGGGT *********************************** ************************ HS_haplotype1 GGTTGATGAAACCCACTGGATGCTTCTAACTAACTTGAAAGACGGCACATTAAAGGGTCT HS_assemblymutate_np1212 GGTTGATGAAACCCACTGGATGCTTCTAACTAACTTGAAAGACGGCACATTAAAGGGTCT HS_haplotype2 GGTTGATGAAACCCACTCGATGCTTCTAACTAACTTGAAAGACAGCACATTAAAGGGTCT ***************** ************************* **************** HS_haplotype1 GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT HS_assemblymutate_np1212 GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT HS_haplotype2 GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT ************************************************************ HS_haplotype1 ATTTTAGCCTGTGGGTAGAGACAGTAACAAAAGACTTTATTTACTCATTTTCAATCGCTC HS_assemblymutate_np1212 ATTTTAGCCTGTGGGTAGAGACAGTAACAAAAGACTTTATTTACTCATTTTCAATCGCTC HS_haplotype2 ATTTTAGCCTGTGGGTAGAGACAGTAAGAAAAGACTTTATTTACTCATTTTCAATCGCTC *************************** ******************************** HS_haplotype1 TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG HS_assemblymutate_np1212 TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG HS_haplotype2 TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG ************************************************************ HS_haplotype1 TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT HS_assemblymutate_np1212 TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT HS_haplotype2 TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT ************************************************************ HS_haplotype1 GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCCCAGACCTACTTAAGCTTAA HS_assemblymutate_np1212 GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCGCAGAACTACTTAAGCTTAA HS_haplotype2 GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCGCAGAACTACTTAAGCTTAA **************************************** **** ************** HS_haplotype1 TGTATCTGCATCATGCGGGTCTGGGTGTGGACGCCCCAGTTAACGAAGTGTAAAAAAGAT HS_assemblymutate_np1212 TGTATCTGCATCATGCGGGTCTGGGTGTGGACGCCCCAGTTAACGAAGTGTAAAAAAGAT HS_haplotype2 TGTATCTGCATCATGCGGGTCTGGGTGTGGACGCCCCAGTTAACGAAGTGTAGAAAAGAT **************************************************** ******* HS_haplotype1 GGAAGAAGGCTCACTTATGGATATTTGGTTCCCAAACAAGCATTTCCTCTAACAGTGGAC HS_assemblymutate_np1212 GGAAGAAGGCTCACTTATGGATATTTGGTTCCCAAACAAGCATCTCCTCTAACAGTGGAC HS_haplotype2 GGAAGAAGGCTCACTTATGGATATTTGGTTCCCAAACAAGCATCTCCTCTAACAGTGGAC ******************************************* **************** HS_haplotype1 TAATAAAACAAAAGGGCACGAAAGAAATTCTGCCCTCTTGCAGTAAGGCTGATGAGTGGG HS_assemblymutate_np1212 TAATAAAACAAAAGGGCACGAAAGAAATTCTGCCCTCTTGCAGTAAGGCTGATGAGTGGG HS_haplotype2 TAATAAAACAAAAGGGCACGAAAGAAATTCTGCCCTCTTGCAGTAAGGCTGATGAGTGGG ************************************************************ HS_haplotype1 ATTACATCACCACAACTTGAATATGTGTGGCTTTTTTGGTATATAGTCTTAAATCTTAGG HS_assemblymutate_np1212 ATTACATCACCACAACTTGAATAAGTGTGGCTTTTTTGGTATATAGTCTTAAATCTTAGG HS_haplotype2 ATTACATCACCACAACTTGAATAAGTGTGGCTTTTTTGGTATATAGTCTTAAATCTTAGG *********************** ************************************ HS_haplotype1 ACTCTGTCCACTAAAGCTTTAAAGGAAAATGTAGGGCATATCTGCAGCGGCTTTTGTTCC HS_assemblymutate_np1212 ACTCTGTCCACTAAAGCTTTAAAGGAAAATGTAGGGCATATCTGCAGCGGCTTTTGTTCC HS_haplotype2 ACTCTGTCCACTAAAGCTTTAAAGGAAAATTTAGGGCATCTCTGCAGAGGCTTTTGTTCC ****************************** ******** ******* ************ HS_haplotype1 TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT HS_assemblymutate_np1212 TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT HS_haplotype2 TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT ************************************************************ HS_haplotype1 GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCCGGAGGCACCAT HS_assemblymutate_np1212 GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCCGGAGGCACCAT HS_haplotype2 GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCTGGAGGCACCAG ************************************************ ********** HS_haplotype1 GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATATACCGCAGTCATGCCCTTCCTTT HS_assemblymutate_np1212 GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATATACCGCAGTCATGCCCTTCCTTT HS_haplotype2 GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATAAACCTCAGACATGCCCTTCCTTT ************************************* *** *** ************** HS_haplotype1 TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT HS_assemblymutate_np1212 TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT HS_haplotype2 TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT ************************************************************ HS_haplotype1 TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCTCC HS_assemblymutate_np1212 TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCTCC HS_haplotype2 TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCTCC ************************************************************ HS_haplotype1 CAGAGAGGTTTAAATGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT HS_assemblymutate_np1212 CAGAGAGGTTTAAAAGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT HS_haplotype2 CAGAGAGGTTTAAAAGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT ************** ********************************************* HS_haplotype1 CTGTTTTGTTTATCTGAAGCTGGTTATTCTTTAGTATTGTATATTGGGCATTGTTCCATC HS_assemblymutate_np1212 CTGTTTTGTTTATCTGAAGCCGGTTATTCTTTAGTATTGTATTTTGGGCATTGTTCCATC HS_haplotype2 CTGTTTTGTTTATCTGAAGCCGGTTATTCTTTAGTATTGTATTTTGGGCATTGTTCCATC ******************** ********************* ***************** HS_haplotype1 TTTTGTTAGGGCACCGCACTCAGATATGTGCTAATGGGAATCATCAGGTGTCCTCTCCAC HS_assemblymutate_np1212 TTTTGTTAGGGCACTGCACTCAGATCTGTGCTAATGGGAATAATCAGGTGTCCTCTCCAC HS_haplotype2 TTTTGTTAGGGCACTGCACTCAGATCTGTGCTAATGGGAATAATCAGGTGTCCTCTCCAC ************** ********** *************** ****************** HS_haplotype1 ACCCGGAAGCCCTGCTAATAGCAGAGTTCGGAATAATAAATCCTGAGAAATATGAACCAC HS_assemblymutate_np1212 ACCCGGAAGCCCTGCTAATAGCAGAGTTCGGAATAATAAATCCTGAGAAATATGAACCAC HS_haplotype2 ACCCGGAAGCCCTGCTAATAGCAGAGTTCGGAATAATAAATCCTGAGAAATATGAACCAC ************************************************************ HS_haplotype1 ATCAGAGGAACCCCCCTCCTCTCGTACATTTGTAGCAACAATATGAAGGATGGCGAAATC HS_assemblymutate_np1212 ATCAGAGGAACCCCCCTCCTCTCGTACATTTGTAGCAACAATATGAAGGATGGCGAAATC HS_haplotype2 ATCAGAGGAACCCCCCTCCTCTCGTACATTTGTAGTAACAATATGAAGGATGGCGAAATC *********************************** ************************ HS_haplotype1 CCAGGTCACATAACCCTGGGGCCTAAAAAAACCCTGGATTTACTTTTCATCATTAAAAAC HS_assemblymutate_np1212 CCAGGTCACATAACCCTGGGGCCTAAAAAAACCCTGGATTTACTTTTCATCATTAAAAAC HS_haplotype2 CCAGGTTACATAACCCTGGGGCCTAAAAAAACCCCGGATTTACTTTTCATCATTAAAAAC ****** *************************** ************************* HS_haplotype1 AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTCGATGGCATACTGGGA HS_assemblymutate_np1212 AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTCGATGGCATACTGGGA HS_haplotype2 AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTAGATGGCATACTGGGA ******************************************** *************** HS_haplotype1 ACCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTGGCCAC HS_assemblymutate_np1212 ACCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTAGCCAC HS_haplotype2 AGCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTAGCCAC * **************************************************** ***** HS_haplotype1 TGTGCTAGAACACACCCCTCATCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT HS_assemblymutate_np1212 TGTGCTAGAACACACCCCTCATCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT HS_haplotype2 TGTGCTAGAAGACACCCCTCCTCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT ********** ********* *************************************** HS_haplotype1 AGGAGCTTTTCTTACTTGTTTCCGACCAGCGCATTGCTTTATCTTGTGTTCAGGCTGCTT HS_assemblymutate_np1212 AGGAGCTTTTCTTACTTGTTTTCGACCAGCGCATTGCTTTATCTTGTGTTCAGGCTGCTT HS_haplotype2 AGGAGCTTTTCTTACTTGTTTTCGACCAGCGCATTGCTTTCTCTTGTGTTCAGGCTGCTT ********************* ****************** ******************* HS_haplotype1 CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGTGGGACAAAAATCAGGCCGCGCCC HS_assemblymutate_np1212 CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGCGGGACAAAAATCAGGCCGCGCCC HS_haplotype2 CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGCGGGACAAAAATCAGGCCGCGCCC ************************************ *********************** HS_haplotype1 GACCTCCGGTCTCTCGTTTTTAATTCTAAGGGATTATATACTCAGAGGAATGCACTGCAA HS_assemblymutate_np1212 GACCTCCGGTCTCTCATTTTTAATTCTAAGGGCTTATATACTCAGAGGAATGCACTGCAA HS_haplotype2 GACCTCCGGTCTCTCATTTTTAATTCTAAGGGCTTATATACTCAGAGGAATGCACTGCAA *************** **************** *************************** HS_haplotype1 GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCCCCCGTTCACCACTTTTGATG HS_assemblymutate_np1212 GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCCCCCGTTCACCACTTTTGATG HS_haplotype2 GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCACCCGTTCACCACTTTTGATG *************************************** ******************** HS_haplotype1 TAACCTGTCCCCAGAGCAGAGAAGATCATCCGCTCTTCGCCTCATCTTTGGATTTGTGAA HS_assemblymutate_np1212 TAACCTGTCCCCAGAGCAGAGAAGATCATCCGCTCTTCGCCTCATCTTTGGATTTGTGAA HS_haplotype2 TAACCTGTCCCCAGAGCAGAGCAGATCATCAGCTCTTCGCCTCATCTTTGGATTTGTGAA ********************* ******** ***************************** HS_haplotype1 ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACCTA HS_assemblymutate_np1212 ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACATA HS_haplotype2 ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACATA ********************************************************* ** HS_haplotype1 GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA HS_assemblymutate_np1212 GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA HS_haplotype2 GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA ************************************************************ HS_haplotype1 AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGAGCAACCTCTGATAACCTCTCCC HS_assemblymutate_np1212 AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGAGCAACCTCTGATAACCTCTCCC HS_haplotype2 AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGTGCAACCTCTGATAACCTCTCCC ************************************* ********************** HS_haplotype1 CCACTTATCAGTTCAACCTGTAAGAAGGATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA HS_assemblymutate_np1212 CCACTTTTCAGTTCAACCTGTAAGAAGAATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA HS_haplotype2 CCACTTTTCAGTTCAACCTGTAAGAAGAATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA ****** ******************** ******************************** HS_haplotype1 GGAAGGCCTCTATGGGAAGGGTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAACCTCC HS_assemblymutate_np1212 GGAAGGCCTCTATGGGAAGGGTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAATCTCC HS_haplotype2 GGAAGGCCTCTATGGGAAGGGTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAATCTCC ******************************************************* **** HS_haplotype1 TAACAGACTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGAGGCTGC HS_assemblymutate_np1212 GAACAGTCTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGAGGCTGC HS_haplotype2 GAACAGTCTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGATGCTGC ***** *********************************************** ***** HS_haplotype1 CCAGGAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATAC HS_assemblymutate_np1212 CCAGGAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATAC HS_haplotype2 CCAGTAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATAC **** ******************************************************* HS_haplotype1 AGGTCAGCCAACCTCGTCAAGGCATAGGAGGAGTATATACAAAAGACAAATCACCATTGA HS_assemblymutate_np1212 AGGTCAGCCAACCTCGTCAAGGCATAGGAGGAGTATATACAAAAGACAAATCACCATTGA HS_haplotype2 AGGTCAGCCAACCTCGTCAAGGCATAGGAGGAGTATATACAAAAGACAAATGACCATTGA *************************************************** ******** HS_haplotype1 ATTTTCTGCCCAGGGGAATTTGAGATATTATAGTTTTCTTGAAACATATCGCGGGGCTGG HS_assemblymutate_np1212 ATTTTCTGCCCAGGGGAATTTGAGATATTATAGTTTTCTTGAAACATATCGCGGGGCTGG HS_haplotype2 ATTTTCTGCCCAGGGGAATTAGAGATATTATAGTTTTCTTGAAAAATATCGCGGGGCTGG ******************** *********************** *************** HS_haplotype1 GATTTTAAACATGACAATGGCTGGTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT HS_assemblymutate_np1212 GATTTTAAACATGACAATGGCTGGTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT HS_haplotype2 GATTTTAAACATGACAATGGCTGTTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT *********************** ************************************ HS_haplotype1 CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA HS_assemblymutate_np1212 CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA HS_haplotype2 CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA ************************************************************ HS_haplotype1 TACTTTTGACTACATAAAAGTTATTCAGGAACAGGCCTTCCCCAAAGTCTGCTCCCATTG HS_assemblymutate_np1212 TACTTTTGACTACATAAAAGTTATTCAGGAACAGGCCTTCCCCAAAGTCTGCTCCCATTG HS_haplotype2 TACTTTTGACTACATAAAAGTTATTCAGGAACAGGCCTTCCCCAAAGTCTGCTCCCATTG ************************************************************ HS_haplotype1 ACCCTGTTATTGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGCTGGA HS_assemblymutate_np1212 ACCCTGTTATTGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGATGGA HS_haplotype2 ACCCTGTTATTGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGATGGA ******************************************************* **** HS_haplotype1 ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA HS_assemblymutate_np1212 ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA HS_haplotype2 ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA ************************************************************ HS_haplotype1 ATCTCACTGAAACCTGGCATGAATATATATATGGAATAGAGATATAGCCATGTTGGTGAT HS_assemblymutate_np1212 ATTTCACTGAAACCTGGCATGAATATATATATGGAATAGAGATATAGCCATGTTGGTGAT HS_haplotype2 ATTTCACTGAAACCTGGCATGAATATATATATGGAATAGAGATATAGCCATGTTGGTGAT ** ********************************************************* HS_haplotype1 TCAAAATTAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATCGTGGGCGGAAGTAGCT HS_assemblymutate_np1212 TCAAAATTAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATGGTGGGCGGAAGTAGCT HS_haplotype2 TCAAAAATAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATGGTGGGCGGAAGTAGCT ****** ************************************ **************** HS_haplotype1 GGATATGATCAGAGAACTGCAACCTTTGAATCAAAATAAACAGTTTTAGTCTGGCTCTCT HS_assemblymutate_np1212 GGATATGATCAGAGAACTGTAACCTTTGAATCAAAATAAACAGTTTTAGTCTGGCTCTCT HS_haplotype2 GGATATGATCAGAGAACTGTAACCTTTGAATCAAAATAAACAGTTTTAGTCTGGCTCTCT ******************* **************************************** HS_haplotype1 AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGGG HS_assemblymutate_np1212 AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGTG HS_haplotype2 AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGTG ********************************************************** * HS_haplotype1 TTCCTATCAGGCCACAGGTATATCTCTGCGCCACCAAAACTTCCAGGGTGTGAGCCGCCG HS_assemblymutate_np1212 CTCCTATCAGGCCACAGATATATCTCTGCGCCACCAAAACTTCTAGGGTGTGAGCCGCCG HS_haplotype2 CTCCTATCAGGCCACAGATATATCTCTGCGCCACCAAAACTTCTAGGGTGTGAGCCGCCG **************** ************************* **************** HS_haplotype1 CGGGCCCCCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG HS_assemblymutate_np1212 CGGGCCACCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG HS_haplotype2 CGGGCCACCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG ****** ***************************************************** HS_haplotype1 GATTTCAGGAGCGCCCTGGCTCCATTTAAATTAGATGCTTTGGTGGTGTCTCTTGATGTT HS_assemblymutate_np1212 GATTTCAGGAGCGCCCTGGCTCCATTTAAATTAGATGCTTTGGTGGTGTCTCTTGATGTT HS_haplotype2 GGTTTCAGGAGCGCCCTGGCTCCACTTTAATTAGATGCTTTGGTGGTGTCTCTTGATGTT * ********************** ** ******************************** HS_haplotype1 TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTGCAGTGAAACTTTGAACTCATTT HS_assemblymutate_np1212 TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTGCAGTGAAACTTTGAACTCATTT HS_haplotype2 TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTACAGTGAAACTTTGAACTCATTT ************************************* ********************** HS_haplotype1 TACCGCTGGACACTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC HS_assemblymutate_np1212 TACCGCTGGACACTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC HS_haplotype2 TACCGCTGGACACTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC ************************************************************ HS_haplotype1 ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA HS_assemblymutate_np1212 ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA HS_haplotype2 ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA ************************************************************ HS_haplotype1 CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC HS_assemblymutate_np1212 CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC HS_haplotype2 CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC ************************************************************ HS_haplotype1 AATGCCCACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA HS_assemblymutate_np1212 AATGCCCACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA HS_haplotype2 AATGCACACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA ***** ****************************************************** HS_haplotype1 TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACTCGGC HS_assemblymutate_np1212 TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACGCGGC HS_haplotype2 TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACGCGGC ******************************************************* **** HS_haplotype1 TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTGCTAAACCAGCTACTCACTTCAATCTG HS_assemblymutate_np1212 TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTGCTAAACCAGCTACTCACTTCAATCTG HS_haplotype2 TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTCCTAAACCAGCTACTCACTTCAATCTG ********************************* ************************** HS_haplotype1 TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGTCTGTGTGTCCCTCCTGTGGGGTCTC HS_assemblymutate_np1212 TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGACTGCGTGTCCCTCCTGTGGGGTCTC HS_haplotype2 TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGACTGCGTGTCCCTCCTGTGGGGTCTC ********************************** *** ********************* HS_haplotype1 TCTGCAGGAATGAAGTTACCCTCCTTCCTTCTTAGGTTGAACATAAAAAATGCCACCTGG HS_assemblymutate_np1212 TCTGCAGGAATGAAGTTACCCTCCTTACTTCTTAGGTTGAACATAAAAAATGCCACCTGG HS_haplotype2 TCTGCAGGAATGAAGTTACCCTCCTTACTTCTTAGGTTGAACATAAAAAATGCCACCTGG ************************** ********************************* HS_haplotype1 GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTACAAAATGAGATTCCAGCATTTTTAATA HS_assemblymutate_np1212 GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTATAAAATGAAATTCCAGGATTTTGAATA HS_haplotype2 GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTATAAAATGAAATTCCAGGATTTTGAATA ********************************* ******* ******* ***** **** HS_haplotype1 ATATGAGGCTGGGGCCTAGGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA HS_assemblymutate_np1212 ATATGAGGCTGGGGCCTACGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA HS_haplotype2 ATATGAGGCTGGGGCCTACGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA ****************** ***************************************** HS_haplotype1 GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGCACACCAGCTGTGCTGTTTTTGTT HS_assemblymutate_np1212 GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGGACACCAGCTGTGCTGTTTTTGTT HS_haplotype2 GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGGACACCAGCTGTGCTGTTTTTGTT ************************************ *********************** HS_haplotype1 GTTTGTACCTTGAAAGCACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGCTGTTTG HS_assemblymutate_np1212 GTTTGTACCTTGAAAGCACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGATGTTTG HS_haplotype2 GTTTGTACCTTGAAAGCACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGATGTTTG ***************************************************** ****** HS_haplotype1 TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG HS_assemblymutate_np1212 TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG HS_haplotype2 TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG ************************************************************ HS_haplotype1 TTTTTTGTACCCCTTACTACTCTCGGCGAGGTAGCACTGCTCCTGTCCTGTAAACATTTT HS_assemblymutate_np1212 TTTTTTGTACCCCTTACTACTCTCGGCGAGGTAGCACTGCTCCTGTCCTGTAAACATTTT HS_haplotype2 TTTTTTGTACCCCTTACTACTCTCGGCGAGCTAGCACTGCTCTTGTCCTGTAAACATTTT ****************************** *********** ***************** HS_haplotype1 AAGTAAGGCATGGGGGAGGATGGGAGCAGAAGCCCACATAAGGCGCGCGCCTTACCTTCA HS_assemblymutate_np1212 AAGTAAGGCATGGGGGAGGATGGGAGCAGAAGCCCACATAAGGCGCGCGCCTTACCTTCA HS_haplotype2 AAGTAAGGCATGGGGGAGGATGGGAGCAGTAGCCCACATAAGGCGCGCGCCTTACCTTCA ***************************** ****************************** HS_haplotype1 ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT HS_assemblymutate_np1212 ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT HS_haplotype2 ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT ************************************************************ HS_haplotype1 CAACAGCAGATTCTTCCTATGTGGGGAGTGGCGTGAGAGAAATATGGGATTATAGGCTCA HS_assemblymutate_np1212 CAACAGCAGATTCTTCCTATGTGGGGAGTGGCGTGAGAGAAATATGGGATTATAGGCTCA HS_haplotype2 CAACAGCAGATTCTTCCTATGTGGGGCGTGGCGTGAGAGAAATATGGGATGATAGGCTCA ************************** *********************** ********* HS_haplotype1 CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG HS_assemblymutate_np1212 CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG HS_haplotype2 CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG ************************************************************ HS_haplotype1 TGAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT HS_assemblymutate_np1212 TCAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT HS_haplotype2 TCAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT * ********************************************************** HS_haplotype1 CAAGTCCGTGACCCTCTCCATAAGAAAAAGTGGCAGACTAGGTGCATAGATATATTGGAA HS_assemblymutate_np1212 CAAGTCCGTGACCCTCTCCATAAGAAAAAGTGGCAGACTAGGTGCATAGATATATTGGAA HS_haplotype2 CAAGTCCGTGACCCTCTCCATAAGAAAAAGTGGCAGACTAGGTGCATAGATATATTGGAA ************************************************************ HS_haplotype1 AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT HS_assemblymutate_np1212 AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT HS_haplotype2 AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT ************************************************************ HS_haplotype1 CCTTACCAAGCTAAAAACTGGTGATGATCACAATGACCCTATGGTGGGGTTTACAGGTAT HS_assemblymutate_np1212 CCTTACCAAGCGAAAAACTCGTGATGATCACAATGGCCCTATGGTGGGGTTTACAGGTAT HS_haplotype2 CCTTACCAAGCGAAAAACTCGTGATGATCACAATGGCCCTATGGTGGGGTTTACAGGTAT *********** ******* *************** ************************ HS_haplotype1 GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG HS_assemblymutate_np1212 GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG HS_haplotype2 GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG ************************************************************ HS_haplotype1 GTAAATGCTGGTTCCAACTGATCGAGATATAAAGAATAGGTTCTGTTTCATTTCATACAA HS_assemblymutate_np1212 GTAAATGCTGGTTCCAACTGATCGAGATATAAAGAATAGGTTCTGTTTCATTTCATACAA HS_haplotype2 GTAAATGCTGGTTCCAACTGATCGAGATATATAGAATAGGTTCTGTTTCATTTCATACAA ******************************* **************************** HS_haplotype1 AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC HS_assemblymutate_np1212 AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC HS_haplotype2 AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC ************************************************************ HS_haplotype1 AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGACTGTATTGAAAGAGATTTT HS_assemblymutate_np1212 AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGATTGTATTGAAAGAGATTTT HS_haplotype2 AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGATTGTATTGAAAGAGATTTT ***************************************** ****************** HS_haplotype1 ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGAGATGGGATCATTAGGAGTTATAGCCAG HS_assemblymutate_np1212 ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGAGATGGGATCATTAGGAGTTATAGCCAG HS_haplotype2 ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGAGATGGGATCATTAGGAGTTATAGCCAG ************************************************************ HS_haplotype1 TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG HS_assemblymutate_np1212 TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG HS_haplotype2 TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG ************************************************************ HS_haplotype1 TTGATGACAAGTTATGAAACAAAGTTTGGGAAAGGATGGAGGCAAACAGTCTAATGGTCT HS_assemblymutate_np1212 TTGATGACAAGTTATGAAACAAAGTTTGGGAAAGGATGGAGGCAAATAGTCTAATGGTCT HS_haplotype2 TTGATGACAAGTTATGAAACAAAGTTTGGGAAAGGATGGAGGCAAATAGTCTAATGGTCT ********************************************** ************* HS_haplotype1 CAGCCTGCATGAGCTTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG HS_assemblymutate_np1212 CATCCTGCATGAGCTTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG HS_haplotype2 CATCCTGCATGAGCTTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG ** ********************************************************* HS_haplotype1 AGCAGGTGCCAGCCTCCGCGTCGTACTGAAACCTTTTTATCTAACTGTGTACTGTGGGGA HS_assemblymutate_np1212 AGCAGGTGCCAGCCTCCGCGGCGTACGGAAACCTTTTTATCTAACTGTGTACTGTGGGGA HS_haplotype2 AGCAGGTGCCAGCCTCCGCGGCGTACGGAAACCTTTTTATCTAACTGTGTACTGTGGGGA ******************** ***** ********************************* HS_haplotype1 CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACCCAATAT HS_assemblymutate_np1212 CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACTCAATAT HS_haplotype2 CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACTCAATAT ***************************************************** ****** HS_haplotype1 GACTGAGATCGTTGAAGCAAAACATGACGAATAAATAGTTGGGAGCTCGTCTTTCCTGAA HS_assemblymutate_np1212 GACTGAGATCGTTGAAGCAAAACATGACGAATAACTAGTTGGGAGCTCCTCTTTCCTGAA HS_haplotype2 GACTGAGATCGTTGAAGCAAAACATGACGAATAACTAGTTGGGAGCTCCTCTTTCCTGAA ********************************** ************* *********** HS_haplotype1 TATAGCATTCTCTTTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG HS_assemblymutate_np1212 TATAGCATTCTCTGTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG HS_haplotype2 TATAGCATTCTCTGTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG ************* ********************************************** HS_haplotype1 AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC HS_assemblymutate_np1212 AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC HS_haplotype2 AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC ************************************************************ HS_haplotype1 CTTCTCTACTCCTGGTATATGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC HS_assemblymutate_np1212 CTTCTCTACTCCTGGTATATGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC HS_haplotype2 CTTCTCTACTCCTGGTATATGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC ************************************************************ HS_haplotype1 AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCGTGGTTG HS_assemblymutate_np1212 AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCATGGTTG HS_haplotype2 AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCATGGTTG ***************************************************** ****** HS_haplotype1 CTATCTCTGTTCTGTGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG HS_assemblymutate_np1212 CTATCTCTGTTCTGGGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG HS_haplotype2 CTATCTCTGTTCTGGGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG ************** ********************************************* HS_haplotype1 CTGGCAATTCAGACTCTCTATAGTCCTAATCATGACCTGGCCGGGCCCGTCCACCTCAAG HS_assemblymutate_np1212 CTGGCAATTCAGACTCTCTATAGTCCTAATCATGACCTGGCCGGGCCCGTCCACCTCAAG HS_haplotype2 CTGGCAATTCAGACTCTCTATAGTCCTAATCATGACCTGGCCGGGCCCGTCCACCTCAAG ************************************************************ HS_haplotype1 TTAATTGCCCGCACGGGTGGTCAAGCATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC HS_assemblymutate_np1212 TTAATTGCCCGCACGGGTGGTCAAGTATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC HS_haplotype2 TTAATTGCCCGCACGGGTGGTCAAGTATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC ************************* ********************************** HS_haplotype1 AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGAAAGATTGTCCACCCACTGC HS_assemblymutate_np1212 AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGCAAGATTGTCCACCCACTGC HS_haplotype2 AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGCAAGATTGTCCACCCACTGC **************************************** ******************* HS_haplotype1 ACTTGTAAGTTAGAGGGACAAGAAGGTAATCTTGATCTTCTGTTTCAAACAGGGAACTAG HS_assemblymutate_np1212 ACTTGTAAGTTAGAGGGACAACAAGGTAATCTTGATCTTCTGTCTCAAACAGGGAACTAG HS_haplotype2 ACTTGTAAGTTAGAGGGACAACAAGGTAATCTTGATCTTCTGTCTCAAACAGGGAACTAG ********************* ********************* **************** HS_haplotype1 AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGAATTTAGTAACCCAGCCGA HS_assemblymutate_np1212 AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGATGTTAGTAACCCAGCCGA HS_haplotype2 AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGATGTTAGTAACCCAGCCCA ****************************************** ************** * HS_haplotype1 CTGCACTACAAAACTAGATTTAATCAAGATTAGGGCATTGAGCCAGGATTCACTGGGCAT HS_assemblymutate_np1212 CTGCACTACAAAACTAGATTTAATCAAGATTAGGGCATTGAGCCAGGATTCACTGGGCAT HS_haplotype2 CTGCACTACAAAACTAGATTTAATCAAGATTAGTGCATTGAGCCAGGATTCACTGGGCAT ********************************* ************************** HS_haplotype1 GTTTTTTCCTCCCTTAAGCTGAGGTCTTTCTCAGAAATTGTAGATGTTAATAATTCCACC HS_assemblymutate_np1212 GTTTTTTCCTCCCTTAAGCTGAGGTCTTTCTCAGAAATTGTAGATGTTAATAATTCCACC HS_haplotype2 GTTTTTTCCTCCCTTAAGCTGAGGTCCTTCTCAGAAATTGTAGATGTTTATAATTCCACC ************************** ********************* *********** HS_haplotype1 TATTGAAATCCCAGCGGCCGAGGGAGACCACCTAGAATCCTGACCAAGTTTATAGAAAGG HS_assemblymutate_np1212 TATTGAAATCCCAGCGGCCGAGGGAGACCACCTAGAATCCTGACCTAGCTTATAGAAAGG HS_haplotype2 TATTGAAATCCCAGCGGCAGAGGGAGACCACCTAGAATCCTGACCTAGCTTATAGAAAGG ****************** ************************** ** *********** HS_haplotype1 CTCATGCAGGAAAAGTATTCGCAGGGACGTTGGAGTTCAGAGGATGTGTTAGCTGAAAAC HS_assemblymutate_np1212 CTCATGCCGGAAAAGTATTCGCAGGGACGTTGGAGTTCAGAGGATGTGTTTGCTGAAAAC HS_haplotype2 CTCATGCCGGAAAAGTATTCGCAGGGACGTTGGAGTTCAGAGGATGTGTTTGCTGAAAAC ******* ****************************************** ********* HS_haplotype1 ATTTATAGTGCTAATGCCCCTTAACCGGCCTTTCTGTGAAAAAATGCCACACAAGTTTTG HS_assemblymutate_np1212 ATTTATAGTGCTAATGCCCCTTAACCGGCCTTTCTGTGAAAACATGCCACACAAGCTTTG HS_haplotype2 ATTTATAGTGCTAATGCCCCTTAACCGGCCTTTCTGTGAAAACATGCCACACAAGCTTTG ****************************************** ************ **** HS_haplotype1 GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT HS_assemblymutate_np1212 GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT HS_haplotype2 GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT ************************************************************ HS_haplotype1 TTTGTAGATGGGTATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT HS_assemblymutate_np1212 TTTGTAGATGGGGATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT HS_haplotype2 TTTGTAGATGGGGATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT ************ *********************************************** HS_haplotype1 CCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT HS_assemblymutate_np1212 CCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT HS_haplotype2 GCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT *********************************************************** HS_haplotype1 TGCTCCTGCCTCAGGCATTCCAGCAGTCTTTGTTTAACTGTTCCAAAAGGATTTGTCTCA HS_assemblymutate_np1212 TGCTCCTGCCTCAGGCATTCCAGCAGTCTTTGTTTAACTGTTCCAAAAGGATTTGTCTCA HS_haplotype2 TGCTCCTGCCTCAGGCATTCCAGCAGTCTCTGTTTAACTGTTCCAAAAGGATTTGTCTCA ***************************** ****************************** HS_haplotype1 AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATCTTGCCTGTAT HS_assemblymutate_np1212 AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATCTTGCCTGTAT HS_haplotype2 AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATATTGTCTGTAT ************************************************* *** ****** HS_haplotype1 CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCACAGACTTACTTGGGAGGGTA HS_assemblymutate_np1212 CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCAGAGACTTACTTGGGAGGGTA HS_haplotype2 CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCAGAGACTTACTTGGGAGGGTA **************************************** ******************* HS_haplotype1 GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA HS_assemblymutate_np1212 GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA HS_haplotype2 GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA ************************************************************ HS_haplotype1 CCGTGTGGGAGGCTTCAGCTATAAAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC HS_assemblymutate_np1212 CCGTGTCGGAGGCTTCAGCTATAGAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC HS_haplotype2 CCGTGTCGGAGGCTTCAGCTATAGAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC ****** **************** ************************************ HS_haplotype1 GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA HS_assemblymutate_np1212 GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA HS_haplotype2 GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA ************************************************************ HS_haplotype1 ATTTTTATCAAGCCCTGGCCTTGGGATTGGACAGAATTTAAATATATAGCTCAAAGTCAA HS_assemblymutate_np1212 ATTTTTATCAAGCCCTGGCCTTGGGATTGGACAGAATTTAAATATATAGCTCAAGGTCAA HS_haplotype2 ATTTTTATCAAGCCCTGGCCTTGGGATTGGACAGAATTTAAATATATAGCTCAAGGTCAA ****************************************************** ***** HS_haplotype1 GTGTCTGGATTATTTGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG HS_assemblymutate_np1212 GTGTCTGGATTATATGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG HS_haplotype2 GTGTCTGGATTATATGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG ************* ********************************************** HS_haplotype1 TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACCTGAGACATGTTTATCTCGGAGC HS_assemblymutate_np1212 TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACTTGAGACATGTTTATCTCGGAGC HS_haplotype2 TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACTTGAGACATGTTTATCTCGGAGC ************************************* ********************** HS_haplotype1 CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT HS_assemblymutate_np1212 CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT HS_haplotype2 CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT ************************************************************ HS_haplotype1 TTATATATGGTTCTTAAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA HS_assemblymutate_np1212 TTATATATGGTTCTTAAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA HS_haplotype2 TTATATATGGTTCTGGAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA ************** ******************************************** HS_haplotype1 CATGATCATACAAAGCTCAGAGGATGAGATGTAGAATGATGGCCTGGGGATGGAGGCTGC HS_assemblymutate_np1212 CATGATCATACAAAGCTCAGAGGATGAGATGTAGAATGATGGCCTGGGGATGGAGGCTGC HS_haplotype2 CATAATCATACAAAGCTCAGAGGATGAGATGTAGAATGCTGGCCTGGGGATGGAGGCTGC *** ********************************** ********************* HS_haplotype1 AGAACTAAGTTATTTCCTGTATTATCTAAGGCTCTTGTAAGTATTAAGTGGCCCTTCCTG HS_assemblymutate_np1212 AGAACTAAGTTATTTCCTGTATTATCTAAGGCTATTGTAAGTATTAAGTGGCCCTTCCTG HS_haplotype2 AGAACTAAGTTATTTCCTGTATTATCTAAGGCTATTGTAAGTATTAAGTGGCCCTTCCTG ********************************* ************************** HS_haplotype1 CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGGCCCTCCCAA HS_assemblymutate_np1212 CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGGCCCTCCCAA HS_haplotype2 CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGACCCTCCCAA ************************************************** ********* HS_haplotype1 GATGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT HS_assemblymutate_np1212 GATGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT HS_haplotype2 GGTGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT * ********************************************************** HS_haplotype1 CCCTTTTATGCAGCATCCCAGAGCTACTAAAAATGTCAGACAAAAATACCCGCTTGGAAA HS_assemblymutate_np1212 CCCTTTTATGCAGCATCCCAGAGCTACTAAAAATGTCAGACAAAAATACCCGCTTGGAAA HS_haplotype2 CCCTTTTATGCAGCATCCCAGAGCTACTAAAAATGTCAGACAAAAATACCCGCTTGGAAA ************************************************************ HS_haplotype1 ATCCCCACCTAGGGCCTCCCTACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC HS_assemblymutate_np1212 ATCCCCACCTAGGGCCTCCCTACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC HS_haplotype2 ATCCCCACCTAGGGCCTCCCCACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC ******************** *************************************** HS_haplotype1 TCAGCTGACTGTAGCTATGGTGAGCCAGAACTATTTATTTTTTAGAAGAAAGAAGGGAAA HS_assemblymutate_np1212 TCAGCTGACTGTAGCTATGGTGAGCCAGAAGTATTTATTTTTTAGAAGAATGAAGGGAAA HS_haplotype2 TCAGCTGTCTGTAGCTATGGTGAGCCAGAAGTATTTATTTTTTAGAAGAATGAAGGGAAA ******* ********************** ******************* ********* HS_haplotype1 CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC HS_assemblymutate_np1212 CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC HS_haplotype2 CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC ************************************************************ HS_haplotype1 ATCCAGCGCTTTGCACCGTGGGAAATTTTATAAGGACTGACAGAATAGATATGGTTAGTT HS_assemblymutate_np1212 ATCCAGCGCTGTGCACGGTGGGAAATTTTATAAGGACTGACAGAATATATATGGTTAGGT HS_haplotype2 ATCCAGCGCTGTGCACGGTGGGAAATTTTATAAGGACTGACAGAATATATATGGTTAGGT ********** ***** ****************************** ********** * HS_haplotype1 CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATATGAGGTTTTGTGC HS_assemblymutate_np1212 CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATATGAGGTTTTGTGC HS_haplotype2 CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATATGAGGTTTTGTGC ************************************************************ HS_haplotype1 CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG HS_assemblymutate_np1212 CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG HS_haplotype2 CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG ************************************************************ HS_haplotype1 CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACGCGCCTGTAGTCAGAGAT HS_assemblymutate_np1212 CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACGCGCCTGTAGTCAGAGAT HS_haplotype2 CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACGCGCCTGTAGTCAGAGAT ************************************************************ HS_haplotype1 GGTTCAGGCTGTCCCAGAGTAATGCCTTTGGTCCAGTGATCGCCACTGAGTCCGGCACAG HS_assemblymutate_np1212 GGTTCAGGCTGTCCCAGAGTAATGCCTTTGGTCCAGTGATCGCCACTGAGTCCGGCACAG HS_haplotype2 GGTTCAGGCTGTCCCAAAGTAATGCCTTTGGTCCAGTGATCTCCACTGAGTCCTGCACAG **************** ************************ *********** ****** HS_haplotype1 GAGTGTGCCTGAGAACAGAGGTGTATTTTCTATTAAAAACAATCACAGAGCATCAGAAAT HS_assemblymutate_np1212 GAGTGTGCCTGAGAACAGAGGTGTATTTTCTATTAAAAACAATCACAGAGCATCAGAAAT HS_haplotype2 GAGTGTGCCTGAGAACAGAGGTGTATCTCCTATTAAAAACAATCACAGAGCATCAGAAAT ************************** * ******************************* HS_haplotype1 TATAGCTTCCACCAAGGCCAATGTAGCCTCGTGCGGGATAAAACTGCCAAGCGCAGCTAG HS_assemblymutate_np1212 TATAGCTTCCACCAAGGCCAATGTAGCCTCGTGCGGGATAAAACTGCCAAGCGCAGCTAG HS_haplotype2 TATAGCTTCCACCAAGGCCAATGTAGCCTCGTGCGGGATAAAACTGCCAAGCGCAGCTAG ************************************************************ HS_haplotype1 GATATTACTTAAAATAAAACATCATCTCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT HS_assemblymutate_np1212 GATATTACTTAAAATAAAACATCATCGCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT HS_haplotype2 GATATTACTTAAAATAAAACATCATCGCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT ************************** ********************************* HS_haplotype1 TACGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT HS_assemblymutate_np1212 TGCGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT HS_haplotype2 TGCGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT * ********************************************************** HS_haplotype1 TTTCTTTTGTCAAAGGCAACATTTTTAGAGCTGCCTAATCGCTACAAGGTGAGATCTTCA HS_assemblymutate_np1212 TTTCTTTTGTCAAAGGCAACATTTTTAGAGCTGCCTAATCGCTACAAGGTGAGATCTTCA HS_haplotype2 TTTCTTTTGTCAAAGCCAACATTTTTAGACGTGCCTAATCGCTACAAGGTGAGATCTTCA *************** ************* ***************************** HS_haplotype1 AGTCCTGACATTCATCAAAAATACCTTCTGCTCACTGTCCTGAGGTACACACCCAGGCAA HS_assemblymutate_np1212 AGTCCTGACATTCATCAAAAATACCTTCTGCTCACTGTCCTGAGGTACACACCCAGGCAA HS_haplotype2 AGTCCTGACATTCATCAAAAATTCCTTCTGCTCACTGGCCTGAGGTACACACCCAGGCAA ********************** ************** ********************** HS_haplotype1 ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACACACTTATTTTAT HS_assemblymutate_np1212 ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACTCACTTATTTTAT HS_haplotype2 ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACTCACTTATTTTAT *********************************************** ************ HS_haplotype1 CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCGGATGTAATCTCGAGTTTGTTTCCATATC HS_assemblymutate_np1212 CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCCGATGTAATCTCGAGTTTGTTTCCATATC HS_haplotype2 CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCCGATGTAATCTCGAGTTTGTTTCCATATC ******************************* **************************** HS_haplotype1 ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT HS_assemblymutate_np1212 ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT HS_haplotype2 ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT ************************************************************ HS_haplotype1 TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTACTTTTGTATCAATGATGATGTCTTCT HS_assemblymutate_np1212 TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTACTTTTGTATCAATGATGATGTCTTCT HS_haplotype2 TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTAGTTTTGTATCAATGATGATGTCTTCT ********************************** ************************* HS_haplotype1 GCTTACAGAGTGTTTCATAACTTTCACTTGATAGGTGCCTGAGCTCTGGTCCCTGGAGTT HS_assemblymutate_np1212 GCTTACAGAGTGTTTCATAACTTTCACTTGATAGGTGCCTGACCTCTGGTCCCTGGAGTT HS_haplotype2 GCTTACAGAGTGTTTCATAACTTTCACTTGATATGTGCCTGACCTCTGGTCCCTGGAGTT ********************************* ******** ***************** HS_haplotype1 CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTGGTGGAATCAAATT HS_assemblymutate_np1212 CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTCGTGGAATCAAATT HS_haplotype2 CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTCGTGGAATCAAATT ********************************************** ************* HS_haplotype1 GGAAAAATTAAATATGTATTGATGGAGGAATAACTTTGTACCCAGCCGTGGGAACCGCTC HS_assemblymutate_np1212 GGAAAAATTAAATATGTATTGATGGAGGAATACCTTTGTACCCAGCCGTGGGAACCGCTC HS_haplotype2 GGAAAAATTAAATATGTATTGATGGAGGAATACCTTTGTACCCAGCCGTGGGAACCGCTC ******************************** *************************** HS_haplotype1 CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT HS_assemblymutate_np1212 CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT HS_haplotype2 CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT ************************************************************ HS_haplotype1 GAGGAACAAAATGTATGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG HS_assemblymutate_np1212 GAGGAACAAAATGTAAGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG HS_haplotype2 GAGGAACAAAATGTAAGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG *************** ******************************************** HS_haplotype1 GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATATAAAATTATGGGTTTGAGGCAGG HS_assemblymutate_np1212 GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATATAAAATTATGGGTTTGAGGCAGG HS_haplotype2 GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATATAAAATTATGGGTTTGAGGCAGG ************************************************************ HS_haplotype1 ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC HS_assemblymutate_np1212 ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC HS_haplotype2 ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC ************************************************************ HS_haplotype1 AGTCGTTCATCTGAACCACCCCAGGTATGAGATTGTCTCCATAAGCGGATCAGCCTCACA HS_assemblymutate_np1212 AGTCGTTCATCTGAACCACCCCAGGTATGAGATTGTCTCCATAAGCGGATCAGCCTCACA HS_haplotype2 AGTCGTTCATCTGAACCACCCCAGGTATGAGATTGTCTCCATAAGCGGATCAGCCTCACA ************************************************************ HS_haplotype1 TGATATATGTGAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC HS_assemblymutate_np1212 TGATATATGTGAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC HS_haplotype2 TAATATATGTGAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC * ********************************************************** HS_haplotype1 ACCGTGTGGAGCGGCCACAGCTGAAGGAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC HS_assemblymutate_np1212 ACCGTGTGGAGCGGCCACAGCTGAAGGAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC HS_haplotype2 ACCGTGTGGAGCGGCCACAGCTGAAGCAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC ************************** ********************************* HS_haplotype1 CACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCAAGGGGA HS_assemblymutate_np1212 CACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCTAGGGGA HS_haplotype2 GACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCTAGGGGA **************************************************** ****** HS_haplotype1 GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG HS_assemblymutate_np1212 GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG HS_haplotype2 GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG ************************************************************ HS_haplotype1 GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAGCGCGACTGTTC HS_assemblymutate_np1212 GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAACGCGACTGTTC HS_haplotype2 GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAACGCGACTGTTC ************************************************ *********** HS_haplotype1 AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCATTGTGGCTCATTCCTTCAG HS_assemblymutate_np1212 AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCAGTGTGGCTCATTCCTTCAG HS_haplotype2 AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCAGTGTGGCTCATTCCTTCAG ***************************************** ****************** HS_haplotype1 AAATATTATTAATGTAAAAACTCGTCCTCATATAAATAGAAATTCCCCTCCACAACAAAC HS_assemblymutate_np1212 AAATATTATTAATGTTAAAACTCGTCCTCATATAAACAGTCATTCCCCTCCACAACAAAC HS_haplotype2 AAATATTATTAATGTTAAAACTCGTCCTCATATAAACAGTCATTCCCCTCCACAACAAAC *************** ******************** ** ******************* HS_haplotype1 CATGCTTTGGAACATTCCCCTCTACCCTTCCTAAGGGACCCAGTAAGGTAACTACCCGGG HS_assemblymutate_np1212 CATGCTTTGGAACTTTCCCCTGTACCCTGCCTAATGGACCCAGTAAGGTAACTACCCGGG HS_haplotype2 CATGCTTTGGAACTTTCCCCTGTACCCTGCCTAATGGACCCAGTAAGGTAACTACCCGGG ************* ******* ****** ***** ************************* HS_haplotype1 CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT HS_assemblymutate_np1212 CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT HS_haplotype2 CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT ************************************************************ HS_haplotype1 TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT HS_assemblymutate_np1212 TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT HS_haplotype2 TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT ************************************************************ HS_haplotype1 GGGAAGAGCCTACATGGCCAGACAGGTGCGTTTGATTACAGTAGGCCCATTTGTAGAAAA HS_assemblymutate_np1212 GGGAAGAGCCTACATGGCCAGACAGGTGCGTTTGATTACAGTAGGCCCATTTGTAGAAAA HS_haplotype2 GGGAAGAGCCTACATGGCCAGACAGGTGGGTTTGATTACAGTAGGCCCATTTGTAGAAAA **************************** ******************************* HS_haplotype1 ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCGAGCGGCACAAATGGAGTTT HS_assemblymutate_np1212 ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCCAGCGGCACAAATGGAGTTT HS_haplotype2 ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCCAGCGGCACAAATGGAGTTT **************************************** ******************* HS_haplotype1 TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCGCGCAGGAATCACCTTTGCTTCTT HS_assemblymutate_np1212 TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCTCGCAGGAATCACCTTTGCTTCTT HS_haplotype2 TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCTCGCAGGAATCACCTTTGCTTCTT ************************************ *********************** HS_haplotype1 TCTATAAAAAATAAGCTTCTCAGAACAATTAATTTATATGCGAGGATGGTGAGAGACAGT HS_assemblymutate_np1212 TCTATAAAAAATAAGCTTCTCAGAACAATTAATTTTTATGCGAGGATGGTGAGAGACAGT HS_haplotype2 TCTATAAAAAATAAGCTTCTCAGAACAATTAATTTTTATGCGAGGATGGTGAGAGACAGT *********************************** ************************ HS_haplotype1 GTCCTGTGGAAGACGTCTCAGGGAAAGATTTCAGTAATCCTGAAGCAAGGTGTTGCAGGC HS_assemblymutate_np1212 GTGCTGTGAAAGACGTCTCAGGGAAAGATTTCAGTAATCCTGAAGCAAGGTGTTGCAGGC HS_haplotype2 GTGCTGTGAAAGACGTCTCAGGGAAAGATTTCAGTAATCCTGAAGCAAGGTGTTGCAGGC ** ***** *************************************************** HS_haplotype1 GTGGTTTTTGGAAGGTGAATCATAGCAAGAGAATTCTGGAGACACACAGAACTTGAGGCT HS_assemblymutate_np1212 GTGGTTTTTGGAAGGTGAATCATAGCAAGAGAATTCTGGAGACACACAGAACTTGAGGCT HS_haplotype2 GTGGTTTTTGGAAGGTGAATCATAGCAAGATAATTCTCGAGCCACACAGAACTTGAGGCT ****************************** ****** *** ****************** HS_haplotype1 TACCTTTTTTGTGAACAGATCTGCTGGGAGAGGCCACAACTAGATAGCCAAACATTCTCA HS_assemblymutate_np1212 TACCTTTTTTGTGAACAGATCTGCTGGGAGAGGCCACAACTAGATAGCCAAACATTCTCA HS_haplotype2 TACCTTTTTCGTGAACAGATCTGCTGGGAGAGGCCACAACTAGATAGCCAAACATCCTCA ********* ********************************************* **** HS_haplotype1 AAAATGGTGTGTGCACTAGCCCCTAGTTAGGTGGTTCAGTCAGTTTATCACCGTGATCTC HS_assemblymutate_np1212 AAAATGGTGTGTGCACTAGCCCCTAGTTAGGTGGTTCAGTCAGTTTATCACCGTGATCTC HS_haplotype2 AAAATGGTGTGTGCACTAGCCCCTAGTCAGGTGGTTCAGTCAGTTTATCACCATGATCTC *************************** ************************ ******* HS_haplotype1 TAATTTGGGAGGAGACAAATAGTCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT HS_assemblymutate_np1212 TAATTTGGGAGGAGACAAATAGTCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT HS_haplotype2 TAATTTGGGAGGAGACAAATAATCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT ********************* ************************************** HS_haplotype1 CTACAGTGTTACCGGTTTTTGAGACTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG HS_assemblymutate_np1212 CTACAGTGTTACCGGTTTTTGAGACTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG HS_haplotype2 CTACAGTGTTACCGGTTTTTGAGATTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG ************************ *********************************** HS_haplotype1 GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT HS_assemblymutate_np1212 GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT HS_haplotype2 GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT ************************************************************ HS_haplotype1 TTTACCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT HS_assemblymutate_np1212 TTTAGCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT HS_haplotype2 TTTAGCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT **** ******************************************************* HS_haplotype1 ATGAACATTGTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG HS_assemblymutate_np1212 ATGAACATTGTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG HS_haplotype2 ATGAACATTTTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG ********* ************************************************** HS_haplotype1 TGAGCCAAATGAATATTTATTGGGGTGGGATTTGATTCTTTGCTCTTTTTCACACAAAAG HS_assemblymutate_np1212 TGAGCCAAATGAATATTTATTGGGGTGGGATTTGATTCTTTGCTCTTTTTCACACAAAAG HS_haplotype2 TGCGCCAAATGAATATTTATTGGGGTGGGAATTGATTCTTTGCTCTTGTTCACACAAAAG ** *************************** **************** ************ HS_haplotype1 TACTAAAAGAACCATGCTTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT HS_assemblymutate_np1212 TACTAAAAGAACCATGCTTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT HS_haplotype2 TACTAAAAGAACCATGATTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT **************** ******************************************* HS_haplotype1 CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC HS_assemblymutate_np1212 CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC HS_haplotype2 CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC ************************************************************ HS_haplotype1 AATATTATATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAATTACACTCCC HS_assemblymutate_np1212 AATATTATATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAATTACACTCCC HS_haplotype2 AATATTATATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAAATACACTCCC ************************************************** ********* HS_haplotype1 TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG HS_assemblymutate_np1212 TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG HS_haplotype2 TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG ************************************************************ HS_haplotype1 CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGATGGGCCCAGCAAG HS_assemblymutate_np1212 CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGCTCGGCCCAGCAAG HS_haplotype2 CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGCTCGGCCCAGCAAG ********************************************** * *********** HS_haplotype1 ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGTGTCCATTCCAGGGACTCAAAGTAA HS_assemblymutate_np1212 ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGGGTCCATTCCAGGGACTCAAAGTAA HS_haplotype2 ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGGGTCCATTCCAGGGACTCAAAGTAA *********************************** ************************ HS_haplotype1 TGACTGGTCTCTCCAACAGGAGGAAGCAATTAGCTACATATCTTCACGACTTAATTTGGA HS_assemblymutate_np1212 TGACTGGTCTCTCCAACAGGCGGAAGCAATTAGCTACATATCTTCAGGACTTAATTTGGA HS_haplotype2 TGACTGGTCTCTCCAACAGGCGGAAGCAATTAGCTACATATCTTCAGGACTTAATTTGGA ******************** ************************* ************* HS_haplotype1 AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA HS_assemblymutate_np1212 AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA HS_haplotype2 AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA ************************************************************ HS_haplotype1 AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCCTTT HS_assemblymutate_np1212 AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCTTTT HS_haplotype2 AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCTTTT ******************************************************** *** HS_haplotype1 TAGGAGGACAGGCATATTCAGAGCAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG HS_assemblymutate_np1212 TAGGAGGACAGGCATATTCAGAGCAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG HS_haplotype2 TAGGAGGACAGGCATATTCAGAGGAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG *********************** ************************************ HS_haplotype1 AGAATCTCAGAGTTTTTGGGGGGTTTATCCTTCTACTTTTTTAGAACTCATTCAGTAGAG HS_assemblymutate_np1212 AGAATCTCAGAGTTTTTGGGGGGTTTATCCTTCTACTTTTTTAGAACTCATTCAGTAGAG HS_haplotype2 AGAATCTCAGAGTTTTTGGGGGGTTTATCCTTCTACTTTTTTAGAACTCATTCAGTAGAG ************************************************************ HS_haplotype1 TCCAGGACAAGCAATAAGGGTGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT HS_assemblymutate_np1212 TCCAGGACAAGCAATAAGGGTGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT HS_haplotype2 TCCAGGACAAGCAATAAGGGTGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT ************************************************************ HS_haplotype1 CCTGATACAAGGAAGCTTGGGTCTTAAGGAACTCTTCTGCCCGGGCCCGAAAATATTTAT HS_assemblymutate_np1212 CCTGATACAAGGAAGCTTGGGTCTTAAGTAACTCTTCTGCCCGGGCCCGAAAATATTTAT HS_haplotype2 CCTGATACAAGGAAGCTTGGGTCTTAAGTAACTCTTCTGCCCGGGCCCGAAAATATTTAT **************************** ******************************* HS_haplotype1 CTACTCCTGGTCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGTATTAACTATTATATA HS_assemblymutate_np1212 CTACTCCTGGTCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGTATTAACTATTATATA HS_haplotype2 CTACTCCTGGTCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGAATTAACTATTATATA ******************************************** *************** HS_haplotype1 TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGAGGCCATTCCTGTGTCTTTCCAT HS_assemblymutate_np1212 TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGAGGCCATTCCTGTGTCTTTCCAT HS_haplotype2 TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGCGGCCATTCCTGTGTCTTTCCAT ************************************* ********************** HS_haplotype1 ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC HS_assemblymutate_np1212 ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC HS_haplotype2 ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC ************************************************************ HS_haplotype1 TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT HS_assemblymutate_np1212 TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT HS_haplotype2 TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT ************************************************************ HS_haplotype1 GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA HS_assemblymutate_np1212 GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA HS_haplotype2 GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA ************************************************************ HS_haplotype1 GATGCGCCCCTCATTATAATTATCCCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA HS_assemblymutate_np1212 GATGCGCCCCTCATTATAAAAATACCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA HS_haplotype2 GATGCGCCCCTCATTATAAAAATACCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA ******************* ** ************************************ HS_haplotype1 CCGTGCCAGGAGGGCGTAAATTGTGGGAATAGGTGTGCTGAGACAGCAAGAGACAACTTG HS_assemblymutate_np1212 CCGTGCCAGGAGGGCGTAAATTGTGGGAATGGGTGTGATGAGACAGCAAGAGACAACTTG HS_haplotype2 CCGTGCCAGGAGGGCGTAAATTGTGGGAATGGGTGTGATGAGACAGCAAGAGACAACTTG ****************************** ****** ********************** HS_haplotype1 TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATACAGCTGAGCTGACTCATTTTTCAT HS_assemblymutate_np1212 TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATACAGCTGAGCTGACTCATTTTTCAT HS_haplotype2 TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATACATCTGAGCTGACTCATTTTTCAT ************************************** ********************* HS_haplotype1 GTCCTCAAAGTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGTCAGGCGGC HS_assemblymutate_np1212 GTCCTCAAAGTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGTCAGGCGGC HS_haplotype2 GTCCTCAAACTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGCGAGGCTGC ********* ***************************************** **** ** HS_haplotype1 TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGAATGATTGTATGAATAA HS_assemblymutate_np1212 TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGAATGATTGTATGAATAA HS_haplotype2 TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGGATGATTGTATGAATAA ******************************************* **************** HS_haplotype1 ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT HS_assemblymutate_np1212 ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT HS_haplotype2 ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT ************************************************************ HS_haplotype1 TTTTAATCCCTGGGATGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA HS_assemblymutate_np1212 TTTTAATCCCTGGGATGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA HS_haplotype2 TTTTAATCCCTGGGAGGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA *************** ******************************************** HS_haplotype1 CTCTTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGGCCT HS_assemblymutate_np1212 CTCTTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGGCCT HS_haplotype2 CTATTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGTCCT ** ***************************************************** *** HS_haplotype1 CAGGTAGCCACTATTTTTCCTCCCTAAGCTGGAATTCTAAAGGTCTTCGATTTACTGTGA HS_assemblymutate_np1212 CAGGTAGCCACTATTTTTCCTCCCTAAGCTGGAATTCTAAAGGTCTTCGATTTACTGTGA HS_haplotype2 CAGGTAGCCGCTATTTTTCCTCCCTAAACTGGAATTCTAAAGGTCTTCGATTTACTGTGA ********* ***************** ******************************** HS_haplotype1 GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA HS_assemblymutate_np1212 GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA HS_haplotype2 GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA ************************************************************ HS_haplotype1 TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTGGGAGGTCTCCCC HS_assemblymutate_np1212 TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTCGGAGGTCTCCCC HS_haplotype2 TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTCGGAGGTCTCCCC *********************************************** ************ HS_haplotype1 ACTAAATGGAACTATTTTATGCTTGAGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT HS_assemblymutate_np1212 ACTAGATGGAACTATTTTATGCTTGAGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT HS_haplotype2 ACTAGATGGAACTATTTTATACTTGAGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT **** *************** *************************************** HS_haplotype1 TTATAGCCTGGGAGAGATGATGGTCTTCTCCTGACAGATCACCCTTTCATGATTATACAA HS_assemblymutate_np1212 TTATAGCCTGGGAGAGATGATGGTCTTCTCCTGACAGATCACCCTTTCATGATTATACAA HS_haplotype2 TTATAGCCTGGGAGAGATGAAGGTCTTCTCCTGAGAGATCACCCTTTCATGATTATACGA ******************** ************* *********************** * HS_haplotype1 ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG HS_assemblymutate_np1212 ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG HS_haplotype2 ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG ************************************************************ HS_haplotype1 AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT HS_assemblymutate_np1212 AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT HS_haplotype2 AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT ************************************************************ HS_haplotype1 CTGTCCAACATGATAGCTCTCTGTCATAGTTTCTTTTTTAATCTATGGGGCTGAAGAAAA HS_assemblymutate_np1212 CTGTCCAACATGATAGCCCTCTGTCATAGTTTCTTTTTTGATCTATGGGGCTGATGAAAA HS_haplotype2 CTGTCCAACATGATAGCCCTCTGTCATAGTTTCTTTTTTGATCTATGGGGCTGATGAAAA ***************** ********************* ************** ***** HS_haplotype1 CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT HS_assemblymutate_np1212 CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT HS_haplotype2 CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT ************************************************************ HS_haplotype1 TAGTAGCTGAGTGTTTGAAGCAAACACAGACTGTGTAGCCGAGATTTTTCTTCCTGTGTG HS_assemblymutate_np1212 TAGTAGCTGAGTGTTTGAAGCAAACACAGACTGTGTAGCCGAGATTTTTCTTCCTGTGTG HS_haplotype2 TAGTAGCTTAGTGTTTGAAGCAAACACAGATTGTGTAGCCGAGATTTTTCTTCCTGTATG ******** ********************* ************************** ** HS_haplotype1 GCAGCAAAATAAGTGATAGTAGATTGGAACCCGCCTGGACTCTTTTTAAATGGGGGTCGC HS_assemblymutate_np1212 GCAGCAAAATAAGTGATAGTAGATTGGAACCCGCCTGGACTCTTTTTAAATGGGGGTCGC HS_haplotype2 GCAGCAAAATAACTGAGAGTAGATTGGAACCCGCCTGGACTCTGTTTAAATGGGGGTCGC ************ *** ************************** **************** HS_haplotype1 CCACGCATGCGCCGCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT HS_assemblymutate_np1212 CCACGCATGCGCCGCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT HS_haplotype2 CCACGCATGCGCCGCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT ************************************************************ HS_haplotype1 AGTTTTGTCTATGCAAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC HS_assemblymutate_np1212 AGTTTTGTCTATGCAAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC HS_haplotype2 AGTTTTGTCTATGACAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC ************* ********************************************* HS_haplotype1 TATGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA HS_assemblymutate_np1212 TATGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA HS_haplotype2 TTTGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA * ********************************************************** HS_haplotype1 CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTAGTGTGTTCAGCAATCCCA HS_assemblymutate_np1212 CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTACTTTGTTCAGTAATCCCA HS_haplotype2 CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTACTTTGTTCAGTAATCCCA ****************************************** * ******* ******* HS_haplotype1 GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA HS_assemblymutate_np1212 GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA HS_haplotype2 GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA ************************************************************ HS_haplotype1 TTATTTTGAACCTGGAGAGAACACCTGGAAAAGTGGAAACATTCCCAGGAGGGAACATCT HS_assemblymutate_np1212 TTATTTTGAACCTGGAGAGAAGACCTGGAAAAGTGGAAACATTCCCAGGAGGGAACATCT HS_haplotype2 TTATTTTGAACCTGGAGAGAAGACCTGGAAAAGTGGAAACATTCCCAGGAGGAAACATCT ********************* ****************************** ******* HS_haplotype1 GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA HS_assemblymutate_np1212 GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA HS_haplotype2 GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA ************************************************************ HS_haplotype1 AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA HS_assemblymutate_np1212 AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA HS_haplotype2 AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA ************************************************************ HS_haplotype1 TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT HS_assemblymutate_np1212 TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT HS_haplotype2 TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT ************************************************************ HS_haplotype1 TGAGCTCACCTTTATCTACCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA HS_assemblymutate_np1212 TGAGCTCACCTTTATCTACCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA HS_haplotype2 TGAGCTCACCTTTATCTACCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA ************************************************************ HS_haplotype1 TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG HS_assemblymutate_np1212 TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG HS_haplotype2 TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG ************************************************************ HS_haplotype1 CTTATTCCACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA HS_assemblymutate_np1212 CCTATTCGACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA HS_haplotype2 CCTATTCGACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA * ***** **************************************************** HS_haplotype1 AGAAATACAAAGGGGGACGAGGAGTGATGCCACCCGGGCAGATTCTGGAGACTACACATG HS_assemblymutate_np1212 AGAAATACAAAGGGGGACGAGGAGTGATGCCACCCGGGCAGATTCTGGAGACTACACATG HS_haplotype2 AGAAATACAAAGGGGGACGAGGAGTGATGCCACCCGGGCAGATTCTGGAGACTACACATG ************************************************************ HS_haplotype1 ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC HS_assemblymutate_np1212 ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC HS_haplotype2 ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC ************************************************************ HS_haplotype1 TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA HS_assemblymutate_np1212 TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA HS_haplotype2 TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA ************************************************************ HS_haplotype1 AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC HS_assemblymutate_np1212 AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC HS_haplotype2 AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC ************************************************************ HS_haplotype1 TACCTGTAGCCCCACCATATGGTGCGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA HS_assemblymutate_np1212 TACCTGTAGCCCCACCATATGGTGCGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA HS_haplotype2 TACCTGTAGCACCACCATATGGTGTGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA ********** ************* *********************************** HS_haplotype1 GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT HS_assemblymutate_np1212 GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT HS_haplotype2 GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT ************************************************************ HS_haplotype1 GGCCATCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACAGCTGTT HS_assemblymutate_np1212 GGCCATCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACAGCTGTT HS_haplotype2 GGCCTTCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACGGCTGTT **** ************************************************ ****** HS_haplotype1 ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA HS_assemblymutate_np1212 ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA HS_haplotype2 ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA ************************************************************ HS_haplotype1 AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT HS_assemblymutate_np1212 AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT HS_haplotype2 AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT ************************************************************ HS_haplotype1 ACTGGGAAAGGGAATGTAAAGGAGATATCTCAAATTACAAGAGGCAGGAGGCCGGTAAAA HS_assemblymutate_np1212 ACTGGGAACGGAAATGTAAAGGAGATATCTCAAAAAACAAGAGGCAGGAGGCCGGTAAAA HS_haplotype2 ACTGGGAACGGAAATGTAAAGGAGATATCTCAAAAAACAAGAGGCAGGAGGCCGGTAAAA ******** ** ********************** ************************ HS_haplotype1 GTGTGATCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA HS_assemblymutate_np1212 GTGTGGTCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA HS_haplotype2 GTGTGGTCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA ***** ****************************************************** HS_haplotype1 TGAATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTCGCCTAGAGT HS_assemblymutate_np1212 TGCATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTCGCCTAGAGT HS_haplotype2 TGCATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTGGCCTAGAGT ** *********************************************** ********* HS_haplotype1 GAGTGGTCTGCAGCGCCACATCAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC HS_assemblymutate_np1212 GAGTGGTCTGCAGCGCCACATCAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC HS_haplotype2 GAGTGGTCTGCAGCGCCACATAAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC ********************* ************************************** HS_haplotype1 TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAAATA HS_assemblymutate_np1212 TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAATTA HS_haplotype2 TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAATTA ********************************************************* ** HS_haplotype1 ATTATGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACTTTGGGTGCA HS_assemblymutate_np1212 ATTCTGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACTTTGGGTGCA HS_haplotype2 ATTCTGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACTTTGGGTGCA *** ******************************************************** HS_haplotype1 GCCGAAGTTTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG HS_assemblymutate_np1212 GCCGAAGTTTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG HS_haplotype2 GCCGAAGTTTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG ************************************************************ HS_haplotype1 AAGGGAGAAAAATACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC HS_assemblymutate_np1212 AAGGGAGAAAAATACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC HS_haplotype2 AAGGGAGAAAATTACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC *********** ************************************************ HS_haplotype1 GTGAGCCCCTCCCCCTTTAATACATTTCGTTTCAAAATATTTGCTGGGTTCACTCCAGGT HS_assemblymutate_np1212 GTGAGCCCCTCCCCCTTTAATACATTTCGTTTCAAAATATTTGCTGGGTTCACTCCAGGT HS_haplotype2 GTGAGCCCCTCCCCCTTTAATACATTTTGTTTCAAAATATTTGCTGGGTTCACTCCAGGT *************************** ******************************** HS_haplotype1 TTATGACCATGAGATCCAAGTCCCGCAGGCAGGCGCCTCAGCACTCTGTATAACTGATCC HS_assemblymutate_np1212 TTATGACGATGAGATCCAATTCCCGCAGGCAGGCGCCTCAGCACTCTATATAACTGATCC HS_haplotype2 TTATGACGATGAGATCCAATTCCCGCAGGCAGGCGCCTCAGCACTCTATATAACTGATCC ******* *********** *************************** ************ HS_haplotype1 CAGAAGCTAACTTCATGATGGGATATCCCTTCATTCATCACATACGCTAGCTGGGCCCAC HS_assemblymutate_np1212 CAGAAGCTTACTTCATGATGGGATATCGCTTCATTCATCACATACGCTAGCTGGGCCCAC HS_haplotype2 CAGAAGCTTACTTCATGATGGGATATCGCTTCATTCATCACATACGCTAGCTGGGCCCAC ******** ****************** ******************************** HS_haplotype1 CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT HS_assemblymutate_np1212 CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT HS_haplotype2 CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT ************************************************************ HS_haplotype1 GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGTG HS_assemblymutate_np1212 GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGTG HS_haplotype2 GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGGG ********************************************************** * HS_haplotype1 AGGGAGCCACTGGATGTGATATGTTACTTACTTCCCTTTTTTAAATTGGCTCCATTAGAT HS_assemblymutate_np1212 AGGGAGCCACTGGATGTGATATGTTACTTACTTCCCTTTTTTAAATTGGCTCCATTAGAT HS_haplotype2 AGGGACCCACTGGATGTGATATGTTACTTACTTCCCTTTTTTAAATTGGCTCCATTAGAT ***** ****************************************************** HS_haplotype1 TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTG HS_assemblymutate_np1212 TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTT HS_haplotype2 TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTT *********************************************************** HS_haplotype1 TCAGATTTCCCTGTCTACCAAATGGCAGATAAATAAGAGGGGAAAACTGGAGTAATTGGT HS_assemblymutate_np1212 TCAGATTTCCCTGTCTACCAAATGGCAGATAAATAAGAGGGGAAAACTGGAGTAATTGGT HS_haplotype2 TCAGATTTCCCTGTCTACGAAATGGCAGATAAATAAGAGGGGAAAACTCGAGTAATTGGT ****************** ***************************** *********** HS_haplotype1 TAAGGGAGGCATGGCGTGAAAATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA HS_assemblymutate_np1212 TAAGGGAGGCATGGCGTGAAAATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA HS_haplotype2 TAAGGGAGGCATGGCGTGAATATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA ******************** *************************************** HS_haplotype1 CAATGTGTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA HS_assemblymutate_np1212 CAATGTGTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA HS_haplotype2 CAATGTCTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA ****** ***************************************************** HS_haplotype1 TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGCGAGCTTACAACGGCAGCCTCT HS_assemblymutate_np1212 TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGCGAGCTTACAACGGCAGCCTCT HS_haplotype2 TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGGGAGCTTACAACGGCAGCCTCT ************************************** ********************* HS_haplotype1 TTTTAGTTTGTCACTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC HS_assemblymutate_np1212 TTTTAGTTTGTCACTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC HS_haplotype2 TTTTAGTTTGTCGCTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC ************ *********************************************** HS_haplotype1 TGCTCTGCCTAAGTAAAAATCACCCCAACCCACACATATGCACCGGCACGTTTTTTAGTA HS_assemblymutate_np1212 TGCTCTGCCTAAGTAAAAATCACCCCAACCCACACATATGCACCGGCACGTTTTTTAGTA HS_haplotype2 TGCTCTGCCTAAGTAAAAATCACCCCAAGCCACACATATGCACCGGCACGTTTTTTAGTA **************************** ******************************* HS_haplotype1 GTTTTACACATTTGAGATCGCACAGCTTTCATTATAGCATAGGAAGGTGCTATACAAAGG HS_assemblymutate_np1212 GTTTTACACATTTGAGATCGCACAGCTTTCATTATAGCATAGGAAGGTGCTATACAAAGG HS_haplotype2 GTTTTACACATTTGAGATCGCACAGCTCTCATTATAGCATAGGAAGGTGCTATACAAAGG *************************** ******************************** HS_haplotype1 GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT HS_assemblymutate_np1212 GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT HS_haplotype2 GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT ************************************************************ HS_haplotype1 CAGTTGCTTGATGTATAACAAGTGGAAGCAAAAACTTGTGTGAACCTCCTCAGCTCCAGA HS_assemblymutate_np1212 CAGTTGCTTGATGTATAGCAAGTGGAAGCAGAAACTTGTGTGAACCTCCTCAGCTCCAGA HS_haplotype2 CAGTTGCTTGATGTATAGCAAGTGGAAGCAGAAACTTGTGTGAACCTCCTCAGCTCCAGA ***************** ************ ***************************** HS_haplotype1 GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGGGAAC HS_assemblymutate_np1212 GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGACAAC HS_haplotype2 GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGACAAC ******************************************************* *** HS_haplotype1 TCAAGGACAAGTTTGAAGAGTTTCCTTCATCACAGCAAGTGTTAAATTCACATTTTTGTC HS_assemblymutate_np1212 TCAAGGACAAGTTTGAAGAGTTTCCTTCACCACAGCAAGTGTTAAATTCACATTTTTGTC HS_haplotype2 TCAAGGACAAGTTTGAAGAGTTTCCTTCACCACAGCAAGTGTTAAATTCACATTTTTGTC ***************************** ****************************** HS_haplotype1 TTGTAATACCATGCTCTACTTCACCTGGGCCTCCCCGATATCTGCAGTCTGAGGAGCCAG HS_assemblymutate_np1212 TTGCAATACCATGCTCTACTTCACCTGGGCCTCCCCGATATCTGCAGTCTGATGAGCCAG HS_haplotype2 TTGCAATACCATGCTCTACTTCACCTGGGCCTCCCCGATATCTGCAGTCTGATGAGCCAG *** ************************************************ ******* HS_haplotype1 TTTGTGGTTGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC HS_assemblymutate_np1212 TTTGTGGTTGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC HS_haplotype2 TTTGTGGTTGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC ************************************************************ HS_haplotype1 CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACAGCCTACAAC HS_assemblymutate_np1212 CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACTGCCTACAAC HS_haplotype2 CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACTGCCTACAAC ************************************************** ********* HS_haplotype1 GTACCTTGCCCGACCTTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACAATAGA HS_assemblymutate_np1212 GTACCTTGTCCGACCTTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACAATAGA HS_haplotype2 GTACCTTGTCCGACCTTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACCATAGA ******** ********************************************* ***** HS_haplotype1 GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTCGATCATTTCTGCC HS_assemblymutate_np1212 GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTCGATCATTTCTGCC HS_haplotype2 GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTGGATCATTTCTGCC ********************************************** ************* HS_haplotype1 ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAGCATAAATGCATCCTTC HS_assemblymutate_np1212 ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAGCATAAATGCATCCTTC HS_haplotype2 ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAACATAAATGCATCCTTC ******************************************* **************** HS_haplotype1 CAAACTAGATCAAGCAGCTAGATCACTTTACTGTGAATTCCAACCTATATGAAGGACAAA HS_assemblymutate_np1212 CAAACTAGATCAAGCAGCTAGATCACTTTACTGTGAATTCCAACCTATATGAAGGACAAA HS_haplotype2 CAAACTAGAGCAAGCAGCTAGATCCCTTGACTGTGAATTCCTACCTATATGAAGGACAAA ********* ************** *** ************ ****************** HS_haplotype1 TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT HS_assemblymutate_np1212 TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT HS_haplotype2 TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT ************************************************************ HS_haplotype1 GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT HS_assemblymutate_np1212 GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT HS_haplotype2 GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT ************************************************************ HS_haplotype1 CAGCCTGGCAGATGGGCTCTGAACAACTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT HS_assemblymutate_np1212 CAGCCTGGCAGATGGGCTCTGAACAACTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT HS_haplotype2 CAACCTGGCAGATGGGCTCTGAACATCTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT ** ********************** ********************************** HS_haplotype1 ACTGTTTCCTGAGGTGTGCCTTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT HS_assemblymutate_np1212 ACTGTTTCCTGAGGTGTGCCTTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT HS_haplotype2 ACTGTTTCCTGAGGTCTGCCCTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT *************** **** *************************************** HS_haplotype1 AAGAGGAAATCAACCCTCCTCAGGTGTGAGTATAGAGACGCAGCTGAAAAATAATGCTTC HS_assemblymutate_np1212 AAGAGGAAATCAACCCTCCTCAGGTGTGAGTATAGAGACGCAGCTGAAAAATAATGCTTC HS_haplotype2 AAGAGGAAATCAACCCTCCTCAGGTGTGTGTATAGAGACGCAGCTGAAAAATAATGCTTC **************************** ******************************* HS_haplotype1 ACGACGCCTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT HS_assemblymutate_np1212 ACGACGACTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT HS_haplotype2 ACGACGACTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT ****** ***************************************************** HS_haplotype1 TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC HS_assemblymutate_np1212 TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC HS_haplotype2 TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC ************************************************************ HS_haplotype1 CTGTAAAGTGAATTTGGAGCAGCAAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT HS_assemblymutate_np1212 CTGTAAAGTGAATTTGGAGCAGCTAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT HS_haplotype2 CTGTAAAGTGAATTTGGAGCAGCTAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT *********************** ************************************ HS_haplotype1 TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA HS_assemblymutate_np1212 TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA HS_haplotype2 TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA ************************************************************ HS_haplotype1 TGGTATGGCTGCTGTGTCCCGGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA HS_assemblymutate_np1212 TGGTATGGCTGCTGTGTCCCGGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA HS_haplotype2 TGGTATGGCTGCTGTGTCCCCGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA ******************** *************************************** HS_haplotype1 GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAACTTTTTAAC HS_assemblymutate_np1212 GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAACTTTTTAAC HS_haplotype2 GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAAATTTTTAAC *************************************************** ******** HS_haplotype1 GAAGCATGCAGAGAAGAAAGGGGGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT HS_assemblymutate_np1212 GAAGCATGCAGAGAAGAAAGGGAGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT HS_haplotype2 GAAGCATGCAGAGAAGAAAGGGAGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT ********************** ************************************* HS_haplotype1 TTTTGCCACCTCTGGACTTTAGACAAAAACTCCGAGGGAGTCCAATCCACGTGATGGATT HS_assemblymutate_np1212 TTTTGCCACCTCTCGACTTTAGACAAAAACTCCGAGGGAGCCCAATCCACGTGATGGATT HS_haplotype2 TTTTGCCACCTCTCGACTTTAGACAAAAACTCCGAGGGAGCCCAATCCACGTGATGGATT ************* ************************** ******************* HS_haplotype1 GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCACGTACTTCATCAATT HS_assemblymutate_np1212 GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCAAGTACTTCATCAATA HS_haplotype2 GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCAAGTACTTCATCAATA ********************************************* ************* HS_haplotype1 TCTTTGTAACATCACCAAGTATCTTGTTCTCAGTTGCTTCTAAGTGAACTTACAGAATCA HS_assemblymutate_np1212 TCTTTGTAACATCACCAAGTATCTTGTCCTCAGTTGCTTCTAAGTGAACTTACAGAATCA HS_haplotype2 TCTTTGTAACATCACCAAGTATCTTGTCCTCAGTTGCTTCTAAGTGAACTTACATAATCA *************************** ************************** ***** HS_haplotype1 AATTAACTTCAGCCTGGCAACATGTGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA HS_assemblymutate_np1212 AATTAACTTCAGCCTGGCAACATGTGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA HS_haplotype2 AATTAACTTCAGCCTGGCAACATATGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA *********************** ************************************ HS_haplotype1 TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC HS_assemblymutate_np1212 TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC HS_haplotype2 TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC ************************************************************ HS_haplotype1 ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGCAATCCTTCTGGACTTAA HS_assemblymutate_np1212 ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGCAATCCTTCTGGACTTAA HS_haplotype2 ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGAAATCCTTCTGGACTTAA ****************************************** ***************** HS_haplotype1 TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG HS_assemblymutate_np1212 TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG HS_haplotype2 TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG ************************************************************ HS_haplotype1 TGGAGTTACATGGTGCACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC HS_assemblymutate_np1212 TGGAGTGACATGGTGAACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC HS_haplotype2 TGGAGTGACATGGTGAACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC ****** ******** ******************************************** HS_haplotype1 TGGGCTCGGGGCCCCTAACTTGTGGTGTAAAATAATTTTTAAAAAAAATCTTCTCCTGCC HS_assemblymutate_np1212 TGGGCTCGGGGCCCCTAACTTGTGGTGTAAAATAATTTTTAAAAAAAATCTTCTCCTGCC HS_haplotype2 TGGGCTCGGGGCCTCTACCTTGTGGTGTAAAATAATTTTTAAAAATAATGTTCTCGTGCC ************* *** *************************** *** ***** **** HS_haplotype1 CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTTATTCGTGGCTGGAC HS_assemblymutate_np1212 CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTTATTCGTGGCTGGAC HS_haplotype2 CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTAATTCGTGGCTGGAC ********************************************* ************** HS_haplotype1 AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGCTTGCTTCCCAAA HS_assemblymutate_np1212 AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGCTTGCTTCCCAAA HS_haplotype2 AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGATTGCTTCCCAAA *********************************************** ************ HS_haplotype1 TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG HS_assemblymutate_np1212 TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG HS_haplotype2 TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG ************************************************************ HS_haplotype1 CAAAAAGAAATTACCCTATCATGGTCTTCAAAACTTCCTCTAGACTCCTTCTGCCTTCCA HS_assemblymutate_np1212 CAAAAAGAAATTACCCTATCATAGTCCTCAAAACTGCCTCTAGACTACTTCTGCCTTCCA HS_haplotype2 CAAAAAGAAATTACCCTATCATAGTCCTCAAAACTGCCTCTAGACTACTTCTGCCTTCCA ********************** *** ******** ********** ************* HS_haplotype1 TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA HS_assemblymutate_np1212 TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA HS_haplotype2 TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA ************************************************************ HS_haplotype1 GGGACCAGATACCCTACTCGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC HS_assemblymutate_np1212 GGGACCAGCTACCCTACTAGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC HS_haplotype2 GGGACCAGCTACCCTACTAGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC ******** ********* ***************************************** HS_haplotype1 TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG HS_assemblymutate_np1212 TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG HS_haplotype2 TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG ************************************************************ HS_haplotype1 CCACCCGTGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT HS_assemblymutate_np1212 CCACCCGGGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT HS_haplotype2 CCACCCGGGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT ******* **************************************************** HS_haplotype1 TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA HS_assemblymutate_np1212 TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA HS_haplotype2 TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA ************************************************************ HS_haplotype1 GATTGGACTACCTAAGTCATCAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC HS_assemblymutate_np1212 GATTGGACTACCTAAGTCATCAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC HS_haplotype2 GATTGGACTACCTAAGTGAACAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC ***************** * **************************************** HS_haplotype1 TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTGTATGCAAACCCCGCCGGAAGTTGACT HS_assemblymutate_np1212 TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTCTATGCAAACCCCGCCGGAAGTTGACT HS_haplotype2 TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTCTATGCAAACCCCGCCGGAAGTTGACT ********************************* ************************** HS_haplotype1 GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT HS_assemblymutate_np1212 GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT HS_haplotype2 GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT ************************************************************ HS_haplotype1 GATCACAAAATATATTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG HS_assemblymutate_np1212 GATCACAAAATATATTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG HS_haplotype2 GATTACAAAATATATTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG *** ******************************************************** HS_haplotype1 CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT HS_assemblymutate_np1212 CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT HS_haplotype2 CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT ************************************************************ HS_haplotype1 TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAAATTCTTAATAAGGTTTGACT HS_assemblymutate_np1212 TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAAATTCTTAATAAGGTTTGACT HS_haplotype2 TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAAATTCTTAATAAGGTTTGACT ************************************************************ HS_haplotype1 GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC HS_assemblymutate_np1212 GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC HS_haplotype2 GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC ************************************************************ HS_haplotype1 CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT HS_assemblymutate_np1212 CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT HS_haplotype2 CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT ************************************************************ HS_haplotype1 CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGGT HS_assemblymutate_np1212 CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGGT HS_haplotype2 CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGCT ********************************************************** * HS_haplotype1 GGGTGAGGCCTTGTAGCTCTACACTTCTTTGTGTGACCAGGCTGCCGGGAGAGCTCACTT HS_assemblymutate_np1212 GGGTGAGGCCTTGTAGCTCTACACTTCTTTGTGTGACCAGGCTGCCGGGAGAGCTCACTT HS_haplotype2 GGGTGAGGCCTTGTAGCTCTACAGTTCTATGTGTGACCAGGCTGCCGGGAGAGCTCACTT *********************** **** ******************************* HS_haplotype1 CCATCAACATTTAGTAGGGGGGTTTACTGTGTAATACTCTTGACAATGAAATTGAAGGAT HS_assemblymutate_np1212 CCATCAACATTTAGTAGGGGGGTTTACTGTGTAATACTCTTGACAATGAAATTGAAGGAT HS_haplotype2 CCATCAACATTTAGTAGGGGGGTTTACTGTGTAATACTCCTGACAATGAAATTGAAGGAT *************************************** ******************** HS_haplotype1 TTGTTTTAATGGAGCTCAAATAGACAGGGGTTCTGAAAGTTGCACTGATGCCGGAAAATG HS_assemblymutate_np1212 TTGTTTTAATGGAGCTCAAATAGACAGGGGTTCTGAAAGTTGCACTGATGCCGGAAAATG HS_haplotype2 TTGTTTTAATGGAGCTCAAATAGACAGGGGTTCTGAAAGTTGCACTGATGCCGGAAAATG ************************************************************ HS_haplotype1 AAGCAAAATTAGCTGTGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGG HS_assemblymutate_np1212 AAGCAAAATTAGCTGTGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGG HS_haplotype2 AAGCAAAATTAGCTGTGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGC *********************************************************** HS_haplotype1 TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCA HS_assemblymutate_np1212 TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCA HS_haplotype2 TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCT *********************************************************** HS_haplotype1 GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC HS_assemblymutate_np1212 GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC HS_haplotype2 GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC ************************************************************ HS_haplotype1 TGCTAATCTATCCAACATCATACAAAAGCACATATTAACTGACCTTCATCGAGATTCAAT HS_assemblymutate_np1212 TGCTAATCTATCCAACATCATACAAAAGCACATATTAACTGACCTTCATCGAGATTCAAT HS_haplotype2 TGCTAATCTATCCAATATCATACAAAAGCACATATTAACTGACCTTTATCGAGATTCAAT *************** ****************************** ************* HS_haplotype1 AGCTATTAAACCCCCACAGAAGAAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT HS_assemblymutate_np1212 AGCTATTAAACCCCCACAGAAGAAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT HS_haplotype2 AGCCATTAAACCCCCACAAAAGTAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT *** ************** *** ************************************* HS_haplotype1 GGGAAAGGGGTGGCCAGTGAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC HS_assemblymutate_np1212 GGGAAAGGGGTGGCCAGTGAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC HS_haplotype2 GGGAAAGGGGTGGCCAGTTAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC ****************** ***************************************** HS_haplotype1 TAGGACTCTGCTATAGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA HS_assemblymutate_np1212 TAGGACTCTGCTTTTGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA HS_haplotype2 TAGGACTCTGCTTTTGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA ************ * ********************************************* HS_haplotype1 GATATTAAATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGCG HS_assemblymutate_np1212 GATATTACATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGCG HS_haplotype2 GATATTACATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGCG ******* **************************************************** HS_haplotype1 GATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGACATACTC HS_assemblymutate_np1212 AATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGAGATACTC HS_haplotype2 AATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGAGATACTC **************************************************** ****** HS_haplotype1 TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGAGTATAAGAAC HS_assemblymutate_np1212 TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGAGTATAAGAAC HS_haplotype2 TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGAGGATAAGAAC *************************************************** ******** HS_haplotype1 TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTAGCTTATCTGCAGCGTACATTCATTT HS_assemblymutate_np1212 TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTAGCTTATCTGCAGCGTACATTCATTT HS_haplotype2 TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTCGCTTATCTGCAGCGTACAGTCATTT ********************************** ****************** ****** HS_haplotype1 GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG HS_assemblymutate_np1212 GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG HS_haplotype2 GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG ************************************************************ HS_haplotype1 CTGAGAATAAAGTCGTGCCATTCCATCAAACTTTTCACTTGTGCGACCCATTTTCCCTCC HS_assemblymutate_np1212 CTGAGAATAAAGTCGTGCCATTCCATCAAACTTTTCACTTGTGCGACCCATTTTCCCTCC HS_haplotype2 CTGAGAATAAAGCCGTGCCATTCCATCAAACTTTTCACTTGTTCGACCCATTTTCCCTCC ************ ***************************** ***************** HS_haplotype1 CCTGGGAGGATAAAAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT HS_assemblymutate_np1212 CCTGGGAGGATAAAAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT HS_haplotype2 CCTGGGAGGATAAAAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT ************************************************************ HS_haplotype1 CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT HS_assemblymutate_np1212 CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT HS_haplotype2 CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT ************************************************************ HS_haplotype1 CTTCTACCTGTGATACTTTCCTGCATCCTCCCGATCACCTATCAACTGGAGCCAGTGTCC HS_assemblymutate_np1212 CTTCTACCTGTGATACTTTCCTGCATCCTCCCGATCACCTATCAACTGGAGCCAGTGTCC HS_haplotype2 CTTCTACCTGTTATACTTTCCTACATCCTCCCGATCACCTATCAACTGGCGCCAGTGTCC *********** ********** ************************** ********** HS_haplotype1 CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGCCAGTGATGGATTTGAGCGC HS_assemblymutate_np1212 CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGCCAGTGATGGATTTGAGCGC HS_haplotype2 CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGGCAGTGATGGATTTGAGCGC **************************************** ******************* HS_haplotype1 AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCCCCTGGATCTCCCGACCTGGTTT HS_assemblymutate_np1212 AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCCCCTGGATCTCCCGACCTGGTTT HS_haplotype2 AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCACCTGGATCTCCCGACCTGGTTT ************************************* ********************** HS_haplotype1 CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATCAATTATCA HS_assemblymutate_np1212 CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATCAATTATCA HS_haplotype2 CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATTAATTATCA *************************************************** ******** HS_haplotype1 TTTTTGACAAGTTCTCTTTAGAGGACAACATGATACAGGCAAAAAAAGTGTAAACAAAAC HS_assemblymutate_np1212 TTTTTGACAAGTTCTCTTTAGAGGACAACATGATACAGGCAAAAAAAGTGTAAACAAAAC HS_haplotype2 TTTTTGACAAGTGCTCTGTAGAGGACAAGATGATACATGCAAAAAAAGTGTAAACAAAAC ************ **** ********** ******** ********************** HS_haplotype1 AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT HS_assemblymutate_np1212 AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT HS_haplotype2 AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT ************************************************************ HS_haplotype1 TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCCTTTAGA HS_assemblymutate_np1212 TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCATTTAGA HS_haplotype2 TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCATTTAGA ***************************************************** ****** HS_haplotype1 AATTAGATGAGCTGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC HS_assemblymutate_np1212 AATTAGATGAGATGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC HS_haplotype2 AATTAGATGAGATGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC *********** ************************************************ HS_haplotype1 AGGGCTCTGACCTTTTACAAGACATGAAGGGTGGTGCCCCTGATGGGTCTTTCCAGATCA HS_assemblymutate_np1212 AGGGCTCTGACCTTTTACAAGACATGAAGGGAGGTGCCCCGGATGGGTCTTTCCAGATCA HS_haplotype2 AGGGCTCTGACCTTTTACAAGACATGAAGGGAGGTGCCCCGGATGGGTCTTTCCAGATCA ******************************* ******** ******************* HS_haplotype1 AGAGACCATCCAGGAGTTTTTTTAGCAGCAAGGCGATACATCACATAATATCAGTGCAAT HS_assemblymutate_np1212 AGAGACCATCCAGGAGTTTTTTTAGCAGCAAGGCGATACATCACATAATATCAGTGCAAT HS_haplotype2 AGAGACCATCCAGGAGTTTTTTTAGCAGCAAGGCGATACATCACATAATATCAGTGCAAT ************************************************************ HS_haplotype1 TCTCCTGCCATCATAGTAAAGAATCAAAAAGAGTGCCCCTTGAAAGAAGCACGCCCGTTC HS_assemblymutate_np1212 TCTCCTCCCATCATAGTAAAGAATCAAAAAAAGTGCCCCTTGAAAGAAGCACGCCCGTTC HS_haplotype2 TCTCCTCCCATCATAGTAAAGAATCAAAAAAAGTGCCCCTTGAAAGAAGCACGCCCGTTC ****** *********************** ***************************** HS_haplotype1 ACCGTAAGGGGAGCCAACTTACATACTGTCAAGTTTGGCAGGATAGTAAGGACAAAGACT HS_assemblymutate_np1212 ACCGTAAGGGGAGCCAACTTAGATACTGTCAAGTTTGGCAGGATAGTAAGGACAAAGACT HS_haplotype2 ACCGTAAGGGGAGCCAACTTAGATACTGTCAAGTTTGGCAGGATAGTAAGGTCAAAGACT ********************* ***************************** ******** HS_haplotype1 GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGGGAAGTGC HS_assemblymutate_np1212 GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGGGAAGTGC HS_haplotype2 GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGAGAAGTGC **************************************************** ******* HS_haplotype1 CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGGTGAATTTTGAGAGTTTGC HS_assemblymutate_np1212 CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGGTGAATTTTGAGAGTTTGC HS_haplotype2 CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGGTGAATTTTGAGAGTTTGC ************************************************************ HS_haplotype1 TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA HS_assemblymutate_np1212 TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA HS_haplotype2 TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA ************************************************************ HS_haplotype1 GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT HS_assemblymutate_np1212 GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT HS_haplotype2 GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT ************************************************************ HS_haplotype1 TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT HS_assemblymutate_np1212 TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT HS_haplotype2 TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT ************************************************************ HS_haplotype1 TTAAAAAGGGAGACCTCCTACTAAATAATGAAAGAAAAACACTGCAGTGATGAGGGCTGG HS_assemblymutate_np1212 TTAAAAAGGGAGACCTCCTACTAAATAATGAAAGAAAAACACTGCAGTGATGAGGGCTGG HS_haplotype2 TTAAAAAGGGAGACCTCCTACTAAATAATGAAAGAAAAACACTGCAGTGATGAGGGCTGG ************************************************************ HS_haplotype1 TTTAAAAGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT HS_assemblymutate_np1212 TTTAAATGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT HS_haplotype2 TTTAAATGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT ****** ***************************************************** HS_haplotype1 GAAGCCAAACCAGGTCAGCGCTACTATTTAATATAATGGCATGGGGACCCTTTTGCTGTT HS_assemblymutate_np1212 GAAGCCAAACCAGGTCAGCGCTACTATTTAATATAATGGCATGGGGACCCTTTTGCTGTT HS_haplotype2 GAAGCCAAACCAGGTCAGCGCTACTTTTTAATATAATGGCATGGGGACCCTTTTGCTGTT ************************* ********************************** HS_haplotype1 CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAACAAAGTA HS_assemblymutate_np1212 CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAACAAAGTA HS_haplotype2 CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAAGAAAGTA ***************************************************** ****** HS_haplotype1 GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT HS_assemblymutate_np1212 GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT HS_haplotype2 GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT ************************************************************ HS_haplotype1 TCGAAATCAGCCAGACATCCTAAGATTACAGACCGGGAGGCAGCTTATTTCTGTACAAGA HS_assemblymutate_np1212 TCGAAATCAGTCAGACATCCTAAGATTACGGACCGGGAGGCAGCTTATTTCTGTACAAGA HS_haplotype2 TCGAAATCAGTCAGACATCCTAAGATTACGGACCGGGAGGCAGCTTATTTCTGTACAAGA ********** ****************** ****************************** HS_haplotype1 TCTTGGCTAACTAGAAGGGGAAGACCTCGCGTGAGATAAGCCTGGGCTCAAAGGAAGTGC HS_assemblymutate_np1212 TCTTGGCTAACTAGAAGGGGAAGACCTCGCTTGAGATAAGCCTGGGCTCAAAGGAAGGGC HS_haplotype2 TCTTGGCTAACTAGAAGGGGAAGACCTCGCTTGAGATAAGCCTGGGCTCAAAGGAAGGGC ****************************** ************************** ** HS_haplotype1 AGTTTGAATAAGGGATTTTATTTTTTCATAAAAAGAAAACAGCCAATTTTGTTAATGAAG HS_assemblymutate_np1212 AGTTTGAATAAGGGATTTTATTTTTTCATAAAAAGAAAACAGCCAATTTTGTTAATGAAG HS_haplotype2 AGTTTGAATAAGGGATTTTATTTTTTCATAAAATGAAAACAGCCAATTTTGTTAATGAAG ********************************* ************************** HS_haplotype1 GGGAGGCACGAGGGATACCAATGAGTTTCTTCGGCGCGGACATTCTACTTGTGTATTTAC HS_assemblymutate_np1212 GGGAGGCACGAGGGATACCAATGAGTTTCTTCGGCGCGGACATTCTACTTGTGTATTTAC HS_haplotype2 GGGAGGGCCGAGGGAAACCACTGAGTTGCTTCGGCGCGGACATTCTACTCTTGTATTTAC ****** ******* **** ****** ********************* ********* HS_haplotype1 GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCAAGGCTCGGTGGTTCCAC HS_assemblymutate_np1212 GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCAAGGCTCGGTGGTTCCAC HS_haplotype2 GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCCAGGCTCGGTGGTTCCAC ****************************************** ***************** HS_haplotype1 CCTGGGAGCTAAAATTAAGGATGGTGGATCCCATTGGGTAATTCCTGCCTGAGTTTTAAA HS_assemblymutate_np1212 CCTGGGAGCTAAAATTAAGGATGGTGGATCCCATTGGGTAATTCCTGCCTGAGTTTTAAA HS_haplotype2 CCTGGGAGCTAAAATTAAGGATGGTGGATCACATTGGGTAATTCCTGCCTGAGTTTTAAA ****************************** ***************************** HS_haplotype1 ATAAGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA HS_assemblymutate_np1212 ATAAGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA HS_haplotype2 ATACGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA *** ******************************************************** HS_haplotype1 GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA HS_assemblymutate_np1212 GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA HS_haplotype2 GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA ************************************************************ HS_haplotype1 GAGGCAGCAGGCCCCTGCCTTCCTCCTATATAAAACAGATTCTGAGAGAAAGCAAATGAT HS_assemblymutate_np1212 GAGGCAGCAGGCCCCTGCCTTCCTCCTAGATAAAACAGATTCTGAGAGAAAGCAAATGAT HS_haplotype2 GAGGCAGCAGGCCCCTGCCTTCCTCCTAGATAAAACAGATTCTGAGAGAAAGCAAATGAT **************************** ******************************* HS_haplotype1 TACAGCATTTTATAAGGACAAGGCTGGCAATTACATATGTATTTCTGGGTGGGATAGAGA HS_assemblymutate_np1212 TACAGCATTTTATAAGGACAAGGCTGGCAATTACATATGTATTTCTGGGTGGGATAGAGA HS_haplotype2 TACAGCATTTTAAAAGGACAAGGCTGGCAATCACATATGTATTTCTGGGTGGCATAGAGA ************ ****************** ******************** ******* HS_haplotype1 CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGAAAATTAGTGAGCCATGCCTT HS_assemblymutate_np1212 CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGAAAATTAGTGAGCCATGCCTT HS_haplotype2 CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGCAAATTAGTGAGCCATGCCTT *************************************** ******************** HS_haplotype1 TTATTTAGAGCACAAACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG HS_assemblymutate_np1212 TTATTTAGAGCACAAACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG HS_haplotype2 TTATTTAGAGCACACACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG ************** ********************************************* HS_haplotype1 CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA HS_assemblymutate_np1212 CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA HS_haplotype2 CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA ************************************************************ HS_haplotype1 GTTCAGCTACTAAATTCTTCCCCTTCATAGTTATTTGAGATGTTTAAAAACACTCCTGTA HS_assemblymutate_np1212 GTTCAGCTACTAAATTCTTCCCCTTCATATTTATTTGAGATGATTAAAAACACTCCTGTA HS_haplotype2 GTTCAGCTACTAAATTCTTCCCCTTCATATTTATTTGAGATGATTAAAAACACTCCTGTA ***************************** ************ ***************** HS_haplotype1 TATATTAATGCTGTTTATTTTAGCTGGGCGAAGTCACAATTATTTTGTATGTTACTCGGA HS_assemblymutate_np1212 TATATTAATGCTGTTTATTTTAGCTGGGCGAAGTCACAATTATTTTGTATGTTACTCGGA HS_haplotype2 TATATTAATGCTGTTTATTTTAGCTGGGCGAACTCACAATTATTTTGTATGTTACTCGGA ******************************** *************************** HS_haplotype1 TCTTCATTTCAATAAAATACAATTTGAGATGGAGAAAGCAAGTCATCCAGCCCCCGAGTT HS_assemblymutate_np1212 TCTTCATTTCAATAAAATACAATTTGAGATGGAGAAAGCAAGTCATCCAGCCCCCGAGTT HS_haplotype2 TCTTCATTTCAATAAAATACAATTTGAGATGGAGAAAGCAAGTCATCCAGCCCCCGAGTT ************************************************************ HS_haplotype1 TTCTACCTAATATTATCTGAACACAAGTTGCAGAGGGAAATTGGCTCAGAAGGCCCATGT HS_assemblymutate_np1212 TTCTACCTAATATTATCTGAACACAAGTTGCAGCGGGAAATTGGCTCAGAAGTCCCATGT HS_haplotype2 TTCTGCCTAATATTATCTGAACACAAGTTGCAGCGGGAAATTGGCTCAGAAGTCCCATGT **** **************************** ****************** ******* HS_haplotype1 GACCCCGGCCTGGTTCTTCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATAGTCTTA HS_assemblymutate_np1212 GACCCCGGCCAGGTTCATCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATGGTCTTA HS_haplotype2 GACCCCGGCCAGGTTCATCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATGGTCTTA ********** ***** ************************************ ****** HS_haplotype1 TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA HS_assemblymutate_np1212 TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA HS_haplotype2 TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA ************************************************************ HS_haplotype1 CATGCATGGAAGCCCTTTCTAATGGGAGGTGTTAGCTGAGGGGTCCTCAACCCGGGTCGA HS_assemblymutate_np1212 CATGCATGGAAGCCCTTTCTAATGGGAGGTGTTAGCTGAGGGGTCCTCAACCCGGGTCGA HS_haplotype2 CATGCATGGAAGCCCTTTCCAATGGGAGGTGTTAGCTGAGGGGTCCTCAACGCGGGTCGA ******************* ******************************* ******** HS_haplotype1 CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT HS_assemblymutate_np1212 CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT HS_haplotype2 CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT ************************************************************ HS_haplotype1 CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA HS_assemblymutate_np1212 CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA HS_haplotype2 CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA ************************************************************ HS_haplotype1 AAGGGGACGCCAGAATCCCACAAGATTCAACCGAGGTATTTGAGCCAGTTGAGGCTCACC HS_assemblymutate_np1212 AAGGGGACGCCAGAATCCCACAAGATTCAACCAAGGTATTTGAGCCAGTTGAGGCTCACC HS_haplotype2 AAGGGGACGCCAGAATCCCACAAGATTCAACCAAGGTATTTGAGCCAGTTGAGGCTCACC ******************************** *************************** HS_haplotype1 AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTATAATCAATGAC HS_assemblymutate_np1212 AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTTTAATCAATGAC HS_haplotype2 AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTTTAATCAATGAC ************************************************ *********** HS_haplotype1 CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCCAGA HS_assemblymutate_np1212 CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCTAGA HS_haplotype2 CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCTAGA ******************************************************** *** HS_haplotype1 ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTAGAC HS_assemblymutate_np1212 ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTAGAC HS_haplotype2 ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTACAC ********************************************************* ** HS_haplotype1 TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTATATATAGTAATA HS_assemblymutate_np1212 TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTATATATAGTAATA HS_haplotype2 TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTACATATAGTAATA ************************************************ *********** HS_haplotype1 CACTAACTATAGGAAGGAGCCGGAGCCAATGCTTCTTTAACGGAATGCAGCCTAGGAACT HS_assemblymutate_np1212 CACTAACTATAGGAAGGAGCCGGAGCCAATGCTTCTTTAACGGAATGCAGCCTAGGAACT HS_haplotype2 CACTAACTATCGGAAGGAGCCGGAGCCACTGCTTCTTTAACGGAATGCAGCCTAGGAACT ********** ***************** ******************************* HS_haplotype1 TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG HS_assemblymutate_np1212 TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG HS_haplotype2 TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG ************************************************************ HS_haplotype1 GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC HS_assemblymutate_np1212 GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC HS_haplotype2 GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC ************************************************************ HS_haplotype1 CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCCA HS_assemblymutate_np1212 CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCAA HS_haplotype2 CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCAA ********************************************************** * HS_haplotype1 CAGAATTTGATGTAACTATAATTAATTACCCAAACGCTTTGTAAATGAGCCGGCCAAGAT HS_assemblymutate_np1212 CAGAATTTGATGTAACTATAATTAATTACCCAAACGCTTTGTAAATGAGCCGGCCAAGAT HS_haplotype2 CAGAATTTGATGTAACTATAATTAATTACCCAAACGCTTTGTAAATGAGCCGGCCAAGAT ************************************************************ HS_haplotype1 GATGTCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT HS_assemblymutate_np1212 GATGTCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT HS_haplotype2 GATGTCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT ************************************************************ HS_haplotype1 GTGCAAAGAAGCGCAGCAGGGTGATCCTTCTTCCCTGCGACCCTGCCGGCCCTCCATCTT HS_assemblymutate_np1212 GTGCAAAGAAGCGGAGCAGGGTGATCCTTCTTCCCTGCGTCCCTGCCGGCCCTCCATCTT HS_haplotype2 GTGCAAAGAAGCGGAGCAGGGTGATCCTTCTTCCCTGCGTCCCTGCCGGCCCTCCATCTT ************* ************************* ******************** HS_haplotype1 TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA HS_assemblymutate_np1212 TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA HS_haplotype2 TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA ************************************************************ HS_haplotype1 TGTATTTTTAAGTGGAACTCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCCCAGA HS_assemblymutate_np1212 TGTATTTTTAAGTGGAACTCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCCCAGA HS_haplotype2 TGAATTTTTAAGTGGAACTCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCCCAGA ** ********************************************************* HS_haplotype1 ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG HS_assemblymutate_np1212 ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG HS_haplotype2 ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG ************************************************************ HS_haplotype1 CCCTTCTCAAGGGACAGTCTTTCTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG HS_assemblymutate_np1212 CCCTTCTCAAGGGACAGTCTTTCTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG HS_haplotype2 CCCTTCTCAAGGGACAGTTTTTGTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG ****************** *** ************************************* HS_haplotype1 CTCCTCATCTTGTAGAAAATGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT HS_assemblymutate_np1212 CTCCTCATCTTGTAGAAAATGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT HS_haplotype2 CTCCTCATCTTGTAGAAATTGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT ****************** ***************************************** HS_haplotype1 CAAGGCAGGAGAAAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT HS_assemblymutate_np1212 CAAGGCAGGAGACAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT HS_haplotype2 CAAGGCAGGAGACAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT ************ *********************************************** HS_haplotype1 TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAGGCTCG HS_assemblymutate_np1212 TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAGGCTCG HS_haplotype2 TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAGGCTCG ************************************************************ HS_haplotype1 GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATTTCTAGACGGGGCGTGCTGAGGC HS_assemblymutate_np1212 GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATTTCTAGACGGGGCGTGCTGAGGC HS_haplotype2 GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATTTCTAGTCGGGGCGTGCTGAGGC ******************************************* **************** HS_haplotype1 ACAATTTCTACTAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCGT HS_assemblymutate_np1212 ACAATTTCTACTAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCGT HS_haplotype2 ACAATTTCTAATAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCGT ********** ************************************************* HS_haplotype1 TGCACAAGATGGCTCTTGGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT HS_assemblymutate_np1212 TGCACAAGATGGCTCTTGGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT HS_haplotype2 TGCACAAGATGGCTCTTGGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT ************************************************************ HS_haplotype1 ATAGAGACCTGAGGCCCGGCCTTTTTAGTATCAGCCCCTGGCTATAGAATGTATTGGCTT HS_assemblymutate_np1212 ATAGAGACCTGAGGCCCGGCCTTTTTAGTATCAGCCCCTGGCTATAGAATGTATTGGCTT HS_haplotype2 ATAGAGACCTGAGGCCCGGCCTTTTTAGCATCAGCCCCTGGCTATAGAATGTCTTGGCTT **************************** *********************** ******* HS_haplotype1 CCTATGATTACCTTCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT HS_assemblymutate_np1212 CCTATGATTACCTTCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT HS_haplotype2 CCAATGATTACCTGCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT ** ********** ********************************************** HS_haplotype1 AAAAACTCCTGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG HS_assemblymutate_np1212 AAAAACTCCTGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG HS_haplotype2 AAAAACTCCGGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG ********* ************************************************** HS_haplotype1 GACTTAACAGTAGTGGTCATCACCTCCGGGATGGGATGTTAAATGCTTGGCTCACCTCTT HS_assemblymutate_np1212 GACTTAACAGTAGTGGTCATCACCTCCGGGATGGGATGTTAAATGCTTGGCTCACCTCTT HS_haplotype2 GGCTTAACAGTAGTGGTCATCACCTCCCGGATGGGATGTTAAATGCTTGGCTCAGCTCTT * ************************* ************************** ***** HS_haplotype1 CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTACAGGCGGCCAAAAA HS_assemblymutate_np1212 CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTACAGGCGGCCAAAAA HS_haplotype2 CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTATAGGCGGCCAAAAA ********************************************** ************* HS_haplotype1 GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG HS_assemblymutate_np1212 GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG HS_haplotype2 GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG ************************************************************ HS_haplotype1 ACATTTATATTTTGAACAATCAAAAATCATTCTGCTCTCCAATAACTCTATAACATGGGA HS_assemblymutate_np1212 ACATTTATATTTTGAACAATCAAAAATCATTCTGCTCTCCAATAACTCTATAACATGGGA HS_haplotype2 ACATTTATATTTTGAACAATCAAATATCATTCTGCTCTCCAATAACTCTATAACATGGGA ************************ *********************************** HS_haplotype1 GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA HS_assemblymutate_np1212 GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA HS_haplotype2 GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA ************************************************************ HS_haplotype1 TTCAGAACATAGAGTACTGTGCGCGAGACAGAGTTGGCCAAGTAGGTGCCAGGCTGGAAA HS_assemblymutate_np1212 TTCAGAACATAGAGTACTGTGCGCGAGACAGAGTTGGCCAAGTAGGTGCCAGGCTGGAAA HS_haplotype2 TTCAGAACATAGAGTACTGTGCGCGAGACAGAGTTGCCCAAGTAGGTGCCAGGCTGGAAA ************************************ *********************** HS_haplotype1 ATAATGTACCTCTGGGGTATGACCTCTATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG HS_assemblymutate_np1212 ATAATGTACCTCTGGGGTATGACCTCTATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG HS_haplotype2 ATAATGTACCTCTGGGGTATGACCTCAATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG ************************** ********************************* HS_haplotype1 GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCTTGGT HS_assemblymutate_np1212 GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCTTGGT HS_haplotype2 GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCGTGGT ******************************************************* **** HS_haplotype1 TACGTTTCATCCCTAGAGTCATTTTTATCAGTCAGTAGAGGCCAAAGTACGATGTTGGAT HS_assemblymutate_np1212 TACGTTTCATCCCTAGAGTCATTTTTATCAGTCAGTAGAGGCCAAAGTACGATGTTGGAT HS_haplotype2 TACGTTTCATCCCTAGACTCATTTTTATCAGTCAGTAGAGGCCAAAGTATGATGTTGGAT ***************** ******************************* ********** HS_haplotype1 ATACATTAACCTGATCATCATCTTAGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA HS_assemblymutate_np1212 ATACATTAACCTGATCATCATCTTAGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA HS_haplotype2 ATACATTAACCTGATCATCATCTTGGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA ************************ *********************************** HS_haplotype1 ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG HS_assemblymutate_np1212 ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG HS_haplotype2 ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG ************************************************************ HS_haplotype1 CTTTCTCACCACTACCTTTGATTGTGTCGATGTCACTTGATGAGATTGAGGGCTAGAGTG HS_assemblymutate_np1212 CTTTCTCACCACTACCTTTGATTGTGTCGATGTCACTTGATGAGATTGAGGGCTAGAGTG HS_haplotype2 CTGTCTCACCACTACCTTTGATTGTGTCGATGTCACATGATGAGATTGAGGGCTAGAGTG ** ********************************* *********************** HS_haplotype1 GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT HS_assemblymutate_np1212 GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT HS_haplotype2 GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT ************************************************************ HS_haplotype1 CCTTGTCTTCTCGCTTACCAAAGCCCGGCCTTATTTTTGGTAAAACATCCTCCACAGTTT HS_assemblymutate_np1212 CCTTGTCTTCTCGCTTACCAAAGCCCGGCCTTATTTTTGGTAAAACATCCTCCACAGTTT HS_haplotype2 CCTTGTCTTCTCCCTTACCAAAGCCCGGCCTTATTTTCGGTAAAACATCCTCCACAGTTT ************ ************************ ********************** HS_haplotype1 TAATAGATCCCAAGAAGAAAAGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT HS_assemblymutate_np1212 TAATAGATCCCAAGAAGAAAAGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT HS_haplotype2 TAATAGATCCCAAGAAGAAATGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT ******************** *************************************** HS_haplotype1 GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT HS_assemblymutate_np1212 GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT HS_haplotype2 GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT ************************************************************ HS_haplotype1 GATATGGCTCAGCTAATAGGCATTCCCCAGCCTGTCCAGCTCTTTATGCAATGTACTACA HS_assemblymutate_np1212 GATATGGCTCAGCTAATAGGCATTCCCCAGCCTGTCCAGCTCTTTTTGCAATGTACTACA HS_haplotype2 GATATGGCTCAGCTAATAGGCATCCCCCAGCCTGTCCAGCTCTTTTTGCAATGTACTACA *********************** ********************* ************** HS_haplotype1 CACCCAGAGGGCGCTTCAGACCTTCCTATGTATGTTTTAAAGTTAAACTATCCTTTTATA HS_assemblymutate_np1212 CACCCAGAGGGCGCTTCAGACCTTCCTATGTAGTTTTTAAAGTTAAACCATCCTTTTATA HS_haplotype2 CACCCAGAGGGCGCTTCAGACCTTCCTATGTAGTTTTTAAAGTTAAACCATCCTTTTATA ******************************** ************** *********** HS_haplotype1 GAAAGTATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG HS_assemblymutate_np1212 GAAAGTATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG HS_haplotype2 GAAAGGATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG ***** ****************************************************** HS_haplotype1 TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT HS_assemblymutate_np1212 TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT HS_haplotype2 TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT ************************************************************ HS_haplotype1 GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTCGGCAGACATGGAGAAAATATCTGGT HS_assemblymutate_np1212 GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTCGGCAGACATGGAGAAAATATCTGGT HS_haplotype2 GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTGGGCAGACATGGAGAAAATATCTGGT ********************************** ************************* HS_haplotype1 GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC HS_assemblymutate_np1212 GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC HS_haplotype2 GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC ************************************************************ HS_haplotype1 GTCCAGTACTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG HS_assemblymutate_np1212 GTCCAGTACTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG HS_haplotype2 GTCCAGTCCTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG ******* **************************************************** HS_haplotype1 TAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGAACAACTCTTAAATGCTGGGGAG HS_assemblymutate_np1212 TAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGGACAACTCTTAAATGCTGGGGAG HS_haplotype2 AAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGGACAACTCTTAAATGCTGGGGAG ************************************ ********************** HS_haplotype1 CCAGGGAGCTGGAGTCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG HS_assemblymutate_np1212 CCAGGGAGCTGGAGTCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG HS_haplotype2 CCAGGGAGCTGGAGGCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG ************** ********************************************* HS_haplotype1 GGCCCTCAGACACAACAAGAATTACAGTGCTTCTTGCATTGATAGAGGAGAGAGATGACC HS_assemblymutate_np1212 GGCCCTCAGACACAACAAGAATTACAGTGCTTCTTGCATTGATAGAGGAGAGAGATGACC HS_haplotype2 GGCCCTCAAACACAACAAGAATTACCGTGCTTCTTGCATTGATAGAGGAGAGTGATGACC ******** **************** ************************** ******* HS_haplotype1 TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATCGATCTTACTC HS_assemblymutate_np1212 TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATCGATCTTACTC HS_haplotype2 TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATTGATCTTACTC ************************************************* ********** HS_haplotype1 GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACACATCATG HS_assemblymutate_np1212 GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACACATCATG HS_haplotype2 GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACACATCATG ************************************************************ HS_haplotype1 TATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA HS_assemblymutate_np1212 TATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA HS_haplotype2 TATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA ************************************************************ HS_haplotype1 GCTCTAATCCCAAATATCCTAATTGATAATTCTGGTTATGTCCTCAGCTACTCACTACTG HS_assemblymutate_np1212 GCTCTAATCCCAAATATCCTAATTGATAATTCTGGTTATGTCCTCAGCTACTCACAACTG HS_haplotype2 GCTCTAATCCCAAAGATCCTAAGTGATAATTCTGGTTATGTCCTCAGCTACTCACAACTG ************** ******* ******************************** **** HS_haplotype1 AGTATAATTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA HS_assemblymutate_np1212 AGTATAAGTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA HS_haplotype2 AGTATAAGTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA ******* **************************************************** HS_haplotype1 AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC HS_assemblymutate_np1212 AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC HS_haplotype2 AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC ************************************************************ HS_haplotype1 TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTTCTTTTCC HS_assemblymutate_np1212 TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTACTTTTCC HS_haplotype2 TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTACTTTTCC **************************************************** ******* HS_haplotype1 GAAATCTCTTTCTTCCCTTTTTGCATTAATTGCTGTTGTATATATTTCATCTATTTTCAA HS_assemblymutate_np1212 GAAATCTCTTTCTTCCCTTTTTGCATTAATTGCTGTTGTATATATTTCATCTATTTTCAA HS_haplotype2 GAAATCTCTTTCTTCCCTTATTCCATTAATTGCTGTTCTATATATTTCATCTATTTTCAA ******************* ** ************** ********************** HS_haplotype1 GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTTAAGTTGATCTCTACAGGGTCGG HS_assemblymutate_np1212 GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTTAAGTTGATCTCTACAGGGTCGG HS_haplotype2 GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTCAAGTTGATCTCTACAGGGTCGG ************************************* ********************** HS_haplotype1 AGGCGGTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT HS_assemblymutate_np1212 AGGCGGTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT HS_haplotype2 AGGCGCTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT ***** ****************************************************** HS_haplotype1 GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTTC HS_assemblymutate_np1212 GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTTC HS_haplotype2 GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTTC ************************************************************ HS_haplotype1 CTCAAAACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGGACAGCACAGG HS_assemblymutate_np1212 CTCAAAACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGGACAGCACAGG HS_haplotype2 CTCAAAACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGGACAGCACAGG ************************************************************ HS_haplotype1 AGATGGATCTGTTACGTGGTGTTTCGATGACTAAGTCAGGGGAGGAAGCAAGATCCCCCT HS_assemblymutate_np1212 AGACGGATCTGTTATGTGGTGTTTCGATGACTAAGTCAGGGGAGGAAGCAAGATCCCCCT HS_haplotype2 AGACGGATCTGTTATGTGGTGTTTCGATGACTAAGTCAGGGGAGGAAGCAAGATCCCCCT *** ********** ********************************************* HS_haplotype1 CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA HS_assemblymutate_np1212 CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA HS_haplotype2 CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA ************************************************************ HS_haplotype1 GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA HS_assemblymutate_np1212 GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA HS_haplotype2 GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA ************************************************************ HS_haplotype1 CAGTTACCTGTAAGTGACTTCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA HS_assemblymutate_np1212 CAGTTACCTGTAAGTGACTCCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA HS_haplotype2 CAGTTACCTGTAAGTGACTCCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA ******************* **************************************** HS_haplotype1 TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAAGAAATGTCTTAAAAATTACAGTG HS_assemblymutate_np1212 TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAATAAATGTCTTAAAAATTACAGTG HS_haplotype2 TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAATAAATGTCTTAAAAATTACAGTG ************************************* ********************** HS_haplotype1 CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG HS_assemblymutate_np1212 CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG HS_haplotype2 CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG ************************************************************ HS_haplotype1 AAAAATCATCATGGTTGTATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA HS_assemblymutate_np1212 AAAAAACATCATGGTTGTATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA HS_haplotype2 AAAAAACATCATGGTTATATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA ***** ********** ******************************************* HS_haplotype1 ATATCATTCCTCCTGACCAGGAGCCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT HS_assemblymutate_np1212 ATATCATTCCTCCTGACCAGGAGCCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT HS_haplotype2 ATATAATTCCTCCTGACCAGGAACCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT **** ***************** ************************************* HS_haplotype1 TTTAAGCCTTGGTTGCAGTTGGCATGTAATACTACAAGACTTCCACCTGGTTAGGGTTAT HS_assemblymutate_np1212 TTTAAGCCTTGGTTGCAGTTGGCATGTAATACTACAAGACTTCCACCTGGTTAGGGTTAT HS_haplotype2 TTTAAGCCTTGGTTGCAGTTGGCATGGAATACTACAAGACTTCCAGCTGGTTAGGGTTAT ************************** ****************** ************** HS_haplotype1 TGCCTCCATTAACAGGCTGAATAGCATGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT HS_assemblymutate_np1212 TGCCTCCATTAACAGGCTGAATAGCAGGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT HS_haplotype2 TGCCTCCATTAACAGGCTGAATAGCAGGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT ************************** ********************************* HS_haplotype1 CTCTCCTGCCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCATGGGATAGC HS_assemblymutate_np1212 CTCTCCTACCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCATGGGATAGC HS_haplotype2 TTCTCCTACCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCTTGGGATAGC ****** ****************************************** ********* HS_haplotype1 ATATACATCCCAACAAGTATATTAAATACTCCGCGCAGCTTCAGGTCTCTCCCCATATTT HS_assemblymutate_np1212 ATATACATCCCAAGAAGTATATTAAATACTCCGCGCAGCTTCAGGTCTCTCCCCATATTT HS_haplotype2 ATATACATCCCAAGAAGTATATTAAATACTCCGCGCAGCTTGAGGTCTCTCCCCCTATTT ************* *************************** ************ ***** HS_haplotype1 CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG HS_assemblymutate_np1212 CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG HS_haplotype2 CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG ************************************************************ HS_haplotype1 CTAGACTCCTGAATCAAACTTCACGAGACCTGAGGCCTTCCGTAATTATAAATAATCCTT HS_assemblymutate_np1212 CTAGACTCCTGAATCAAACTTCTCGAGACCGGAGGCCTTCCGTAATTATAAATAATCCTT HS_haplotype2 CTAGACTCCTGAATCAAACTTCTCGAGACCGGAGGCCTTCCGTAATTATAAATAATCCTT ********************** ******* ***************************** HS_haplotype1 TTGTGGTGATCACATGCCTAAGGGTAAAATCTTTCTTTTTTGTCTAAGAATTTTTCACCA HS_assemblymutate_np1212 TTGTGGTGATCACATGCCTATGGGTAAAATCTTTCTTTTTTGTCTAAGAAATTTTCACCA HS_haplotype2 TTGTGGTGATCACATGCCTATGGGTAAAATCTTTCTTTTTTGTCTAAGAAATTTTCACCA ******************** ***************************** ********* HS_haplotype1 ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCACACTCAGCTCTGAA HS_assemblymutate_np1212 ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCACACTCAGCTCTGAA HS_haplotype2 ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCTCACTCAGCTCTGAA ********************************************* ************** HS_haplotype1 GAGTTCATGTATGGTGTGTCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC HS_assemblymutate_np1212 GAGTTCATGTATGGTGTGTCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC HS_haplotype2 GAGTTCATGTATGGTGTGCCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC ****************** ***************************************** HS_haplotype1 CTCTTGAGGGGTAAATTTTTATTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA HS_assemblymutate_np1212 CTCTTGAGGGGTAAATTTTTATTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA HS_haplotype2 CTCTTGAGGGGTAAATTTTTATTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA ************************************************************ HS_haplotype1 GTCTGTCTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC HS_assemblymutate_np1212 GTCTGTCTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC HS_haplotype2 GTCTGTGTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC ****** ***************************************************** HS_haplotype1 CTGCCTGTATACCATCCAACCTCATGTCACTTTAAATAAGAGAGCATCACGACGGTTTAA HS_assemblymutate_np1212 CTGCCTGTATACCATCCAACCTCATGTCACTTTAAATAAGAGAGCATCACGACGGTTTAA HS_haplotype2 CTGACTGAATACCATCCAACCTCATGCCACTTTAAATAAGAGAGCATCACGACGGTTTAA *** *** ****************** ********************************* HS_haplotype1 TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT HS_assemblymutate_np1212 TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT HS_haplotype2 TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT ************************************************************ HS_haplotype1 TTGGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT HS_assemblymutate_np1212 TTGGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT HS_haplotype2 TTTGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT ** ********************************************************* HS_haplotype1 TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG HS_assemblymutate_np1212 TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG HS_haplotype2 TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG ************************************************************ HS_haplotype1 TGCCCATGATGAGAGCATCCTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG HS_assemblymutate_np1212 TGCCCATGATGAGAGCATCCTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG HS_haplotype2 TGCCAATGATGAGAGCATACTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG **** ************* ***************************************** HS_haplotype1 GCAAAAAATTCCTTCTGCAGTGGAGGGGATTACTTTGACTTCAAAACGAGGCTTCCCTGG HS_assemblymutate_np1212 GCAAAAAAATCCTTCTGAAGTGGAGGGGATTACTTTGACTTCAAAACAAGGCTTCCCTGG HS_haplotype2 GCAAAAAAATCCTTCTGAAGTGGAGGGGATTACTTTGACTTCAAAACAAGGCTTCCCTGG ******** ******** ***************************** ************ HS_haplotype1 CGGAGTCAGGAGCTACTCTTATCAGCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT HS_assemblymutate_np1212 CGGAGTCAGGAGCTACTCTTATCATCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT HS_haplotype2 CGGAGTCAGGAGCTACTCTTATCATCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT ************************ *********************************** HS_haplotype1 TTGTAAATATAGTCATATGCCTAACCTCTCAGAAATAAAATGTGACTGCGGCCCAGCTCC HS_assemblymutate_np1212 TTGTAAATATAATCATATGCCTAACCTCTCAGAAATAATATGTGACTGCGGCCCAGCTCC HS_haplotype2 TTGTAAATATAATCATATGCCTAACCTCTCAGAAATAATATGTGACTGCGGCCCAGCTCC *********** ************************** ********************* HS_haplotype1 AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC HS_assemblymutate_np1212 AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC HS_haplotype2 AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC ************************************************************ HS_haplotype1 ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT HS_assemblymutate_np1212 ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT HS_haplotype2 ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT ************************************************************ HS_haplotype1 GCCACCCTCCAGAGGTTGCAAAGTTAAAGAACAGTCTTGTGGTGAATATACGAAGTTCGG HS_assemblymutate_np1212 GCCACCCTCCAGAGGTTGCAAAGTTAAAGAACAGTCTTGTGGTGAATATACGAAGTTCGG HS_haplotype2 GCCACCCTCCTGAGGTTGCAAAGTTAAAGAACAGTCTTGTGGTGAATATACGAAGTTCGG ********** ************************************************* HS_haplotype1 TCTCCATATCAGATCAGCCTTCAGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT HS_assemblymutate_np1212 TCTCCATATCAGATCAGCCTTCAGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT HS_haplotype2 CCTCCATTTCAGATCAGCCTTCCGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT ****** ************** ************************************* HS_haplotype1 TAGAGAATTGCATGCTGACCGCTCCCTGGTTTCACTGAGAAGATTTATATACACTAGATT HS_assemblymutate_np1212 TAGAGAATTGCATGCTGACCGCTCCCTGGTTTCACTGAGAACATTTATATACACTAGATT HS_haplotype2 TAGAGAATTGCATGCTGACCGCTCTCTGGTTTCACTGAGAACATTTATATACACTAGATT ************************ **************** ****************** HS_haplotype1 GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGC HS_assemblymutate_np1212 GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGG HS_haplotype2 GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGG *********************************************************** HS_haplotype1 TATGAAAACACTAACATCGCCTATACAAAACAAAGAGCTTGTGTCAGCGGGAGCAATTGA HS_assemblymutate_np1212 TGTGAAAACAGTAACATAGCGTATACAATCCAAAGAGCTTGTGTCAGCGGGAGCAATTGA HS_haplotype2 TGTGAAAACAGTAACATAGCGTATACAATCCAAAGAGCTTGTGTCAGCGGGAGCAATTGA * ******** ****** ** ******* ****************************** HS_haplotype1 CGTCCGCTCTGCAACTTTGAGTCTCTGAAGAAAGGGCTCAACACCCAGCTCTCCCGGATC HS_assemblymutate_np1212 CGTCCGCTCTGCAACTTTGAGTCTCTGAAGAAAGGGCTCAACACCCAGCTCTCCCGGATC HS_haplotype2 CGTCCGCTCTGCAACTTTGAGTCTCTGAAGAAAGGGCACAACACCCAGCTCTCCCGGATC ************************************* ********************** HS_haplotype1 TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC HS_assemblymutate_np1212 TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC HS_haplotype2 TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC ************************************************************ HS_haplotype1 ACGGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGA HS_assemblymutate_np1212 ACAGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGA HS_haplotype2 ACAGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGG ** ******************************************************** HS_haplotype1 GTGCAGTATATGCTTTCTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC HS_assemblymutate_np1212 GTGCAGTATATGCTTTCTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC HS_haplotype2 GTGCAGTATATGCTTACTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC *************** ******************************************** HS_haplotype1 CAGGCAACACATCCTCACAGCAGCACATTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA HS_assemblymutate_np1212 CAGGCAACACATCCTCACAGCAGCACATTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA HS_haplotype2 CAGGCAACACATCCTCACAGCAGCACTTTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA ************************** ********************************* HS_haplotype1 CCCTGAGGCCCATCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT HS_assemblymutate_np1212 CCCTGAGGCCCATCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT HS_haplotype2 CCCTGAGGCCCGTCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT *********** ************************************************ HS_haplotype1 CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGTTTTTATTTTCTCCTCTGCTTTAT HS_assemblymutate_np1212 CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGTTTTTATTTTCTCCTCTGCTTTAT HS_haplotype2 CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGCTTTTATTTTCTCCTCTGCTTTAT ************************************ *********************** HS_haplotype1 TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG HS_assemblymutate_np1212 TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG HS_haplotype2 TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG ************************************************************ HS_haplotype1 AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATATTGGCACAGCGCA HS_assemblymutate_np1212 AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATATTGGCACAGCGCA HS_haplotype2 AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATTTTTGCACAGCGCA ********************************************** ** ********** HS_haplotype1 GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCAGTGTGAAGATTGCCAAATAATCATGA HS_assemblymutate_np1212 GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCAGTGTGAAGATTGCCAAATAATCATGA HS_haplotype2 GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCATTGTGAAGATTGCCAAATAATCATGA ********************************** ************************* HS_haplotype1 GAGATTTGCATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA HS_assemblymutate_np1212 GAGATTTGCATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA HS_haplotype2 GAGATTTGCATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA ************************************************************ HS_haplotype1 AACAAACTGCATAGAAAAAATTGGTAAGAGATACTACAGGATCATGACCTAGCCGGCAAC HS_assemblymutate_np1212 AACAAACTGCATAGAAAAAATTGGTAAGAGATACTACAGGATCATGACCTAGCCGGCAAC HS_haplotype2 AACAAACTGCATAGAGAAAATTGGTAAGAGATACTACAGGATCATGAACTAGCCGGCAAC *************** ******************************* ************ HS_haplotype1 ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT HS_assemblymutate_np1212 ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT HS_haplotype2 ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT ************************************************************ HS_haplotype1 TCTGTTTTCATATGAACTTACAAGCAGGCTATTTTTTTATCATCCTCTGTGCTAATTTGG HS_assemblymutate_np1212 TCTGTTTTCATATGAACTTACAAGCAGGCTATTTTTTTATCATCCTCTGTGCTAATTTGG HS_haplotype2 TCTGTTTTCATATGAACATACAAGCAGGCTATTTTTCTATCATCCTCTGTGCTAATTTGG ***************** ****************** *********************** HS_haplotype1 AAGACCTCCTGTTGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA HS_assemblymutate_np1212 AAGACCTCCTGTTGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA HS_haplotype2 AAGACCTCCTGTGGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA ************ *********************************************** HS_haplotype1 GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGGCTGC HS_assemblymutate_np1212 GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGGCTGC HS_haplotype2 GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGTCTGC ******************************************************* **** HS_haplotype1 CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA HS_assemblymutate_np1212 CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA HS_haplotype2 CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA ************************************************************ HS_haplotype1 GCAAAGTCTGCTGGCATTCCACCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC HS_assemblymutate_np1212 GCAAAGTCTGCTGGCATTCCACCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC HS_haplotype2 GCAAAGTCTGCTGGCATTCCAGCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC ********************* ************************************** HS_haplotype1 AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG HS_assemblymutate_np1212 AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG HS_haplotype2 AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG ************************************************************ HS_haplotype1 AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC HS_assemblymutate_np1212 AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC HS_haplotype2 AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC ************************************************************ HS_haplotype1 TGGGTTGAAAAATAATAGGTGATGTTTTTGTCCCTATAAATGTATATTGAATATTAAGTA HS_assemblymutate_np1212 TGGGTTGAAAAATAATAGGTGATGTTTTTGTCCCTATAAATGTATATTGAATATTAAGTA HS_haplotype2 TTGGTTGCATAATAATAGGTGATGTTTTCGTCCCTATAAATGTATATTGAATATTAAGTA * ***** * ****************** ******************************* HS_haplotype1 ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG HS_assemblymutate_np1212 ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG HS_haplotype2 ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG ************************************************************ HS_haplotype1 GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCGCTGTTGCAAGAGAACAAGGAAGCCAT HS_assemblymutate_np1212 GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCTCTGTTGCAAGAGAACAAGGAAGCCAT HS_haplotype2 GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCTCTGTTGCAAGAGAACAAGGAAGCCAT ********************************* ************************** HS_haplotype1 TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG HS_assemblymutate_np1212 TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG HS_haplotype2 TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG ************************************************************ HS_haplotype1 ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG HS_assemblymutate_np1212 ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG HS_haplotype2 ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG ************************************************************ HS_haplotype1 CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG HS_assemblymutate_np1212 CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG HS_haplotype2 CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG ************************************************************ HS_haplotype1 GGACATGGTATGAAACCCTTCAACAAAAATTAAATACTTAGGCTTTCAAAGGCCTTCCCC HS_assemblymutate_np1212 GGACATGGTATGAAACCCTTCAACAAAAATTAAATAGTTAGGCTTTCAAAGGCCTTCCCC HS_haplotype2 GAACATGGTATGAAACCCTTCAACAAAAATTAAATAGTTAGGCTTTCAAAGGCCTTCCCC * ********************************** *********************** HS_haplotype1 CATGCTAACAGGCAACAGATCATTTTTGGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT HS_assemblymutate_np1212 CATGCTAATAGGCAACAGATCATTTTTTGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT HS_haplotype2 CATGCTAATAGGCAACAGATCATTTTTTGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT ******** ****************** ******************************** HS_haplotype1 AAAAGACAGACTATATATGGAATAATAAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG HS_assemblymutate_np1212 AAAAGACAGACTATATATGGAATAATTAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG HS_haplotype2 AAAAGACAGACTATATATGGAATAATTAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG ************************** ********************************* HS_haplotype1 GTGAATCATAGGTTTATTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG HS_assemblymutate_np1212 GTGAATCATAGGTTTGTTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG HS_haplotype2 GTGAATCATAGGTTTGTTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG *************** ******************************************** HS_haplotype1 TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG HS_assemblymutate_np1212 TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG HS_haplotype2 TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG ************************************************************ HS_haplotype1 TAAGAACTCATTGCACTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC HS_assemblymutate_np1212 TAAGAACTCATTGCAGTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC HS_haplotype2 TAAGAACTCATTGCAGTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC *************** ******************************************** HS_haplotype1 TTCTTTGGTCCTATACAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG HS_assemblymutate_np1212 TTCTTTGGTCCTATATAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG HS_haplotype2 TTCTTTGGTCCTATATAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG *************** ******************************************** HS_haplotype1 GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA HS_assemblymutate_np1212 GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA HS_haplotype2 GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA ************************************************************ HS_haplotype1 ATTTAGTGGGACTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA HS_assemblymutate_np1212 ATTTAGTGGGACTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA HS_haplotype2 ATTTAGTGGGCCTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA ********** ************************************************* HS_haplotype1 GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA HS_assemblymutate_np1212 GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA HS_haplotype2 GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA ************************************************************ HS_haplotype1 TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC HS_assemblymutate_np1212 TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC HS_haplotype2 TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC ************************************************************ HS_haplotype1 AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTGCAC HS_assemblymutate_np1212 AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTGCAC HS_haplotype2 AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTACAC ******************************************************** *** HS_haplotype1 CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC HS_assemblymutate_np1212 CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC HS_haplotype2 CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC ************************************************************ HS_haplotype1 CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT HS_assemblymutate_np1212 CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT HS_haplotype2 CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT ************************************************************ HS_haplotype1 TCAAAATGAGGCTCAGACACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTAC HS_assemblymutate_np1212 TCAAAATGAGGCTCAGACACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTAC HS_haplotype2 TCAAAATGAGGCTCAGCCACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTGC **************** ***************************************** * HS_haplotype1 AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT HS_assemblymutate_np1212 AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT HS_haplotype2 AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT ************************************************************ HS_haplotype1 AAGTTAAGTAGAGAGATACGATGGAGCGCCTTAAAATGTATTTAGCCCGCTACAAGGAGT HS_assemblymutate_np1212 AAGTTAAGTAGAGCGATACGATGGAGCGCCTTAAAATGTATTTAGCCCGCTACAAGGAGA HS_haplotype2 AAGTTAAGTAGAGCGATACGATGGAGCGCCTTAAAATGTATTTAGCCCGCTACAAGGAGA ************* ********************************************* HS_haplotype1 GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC HS_assemblymutate_np1212 GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC HS_haplotype2 GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC ************************************************************ HS_haplotype1 CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGCT HS_assemblymutate_np1212 CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGCT HS_haplotype2 CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGCT ************************************************************ HS_haplotype1 AGTGTTATGCACTCAGAGACTAAGGTCCTAATGGCATGTGCTTCCTGCTAAGCAAGGGAC HS_assemblymutate_np1212 AGTGTTACGCACTCAGAGACTAAGGTCCTAATGGCATGTGCTTCCTGCTAAGGAAGGGAC HS_haplotype2 AGTGTTACGCACTCAGAGACTAAGGTCCTAATGGCATGTGCTTCCTGCTAAGGAAGGGAC ******* ******************************************** ******* HS_haplotype1 TCTCTCTGTTATAACCATCCCGGGCGCCAGTAGTTCTGTTATGACGCGGCTTTCATGGCG HS_assemblymutate_np1212 TCTCTCTGTTATAACCATCCCGGGCGCCAGTAGTTCTGTTATGACGCGGCTTTCATGGCG HS_haplotype2 TCTCTCTGTTATAACCATCCCGGGCGACAGTAGTTCTGTTATGACGCGGCTTTCATGGCG ************************** ********************************* HS_haplotype1 TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGAGTTTAGTGAGTGTGTGATCTGCA HS_assemblymutate_np1212 TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGAGTTTAGTGAGTGTGTGATCTGCA HS_haplotype2 TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGAGTTTAGTGAGTGTGTGATCTGCA ************************************************************ HS_haplotype1 AGCATTTCCCCAAATTTATATAGCAGTATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC HS_assemblymutate_np1212 AGCATTTCCCCAAATTTATATAGCAGTATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC HS_haplotype2 AGCATTTCCCCAAATTTATATAGCAGTATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC ************************************************************ HS_haplotype1 CAGCATTTTCTACTAAAGAATGTAATGTAGAGTAGGCTGAAGAGGCTCTACTCATGTAAT HS_assemblymutate_np1212 CAGCATTTTCTACTAAAGAATGTAATGGAGAGTAGGCTGAAGAGGCTCTACTCATGTGAT HS_haplotype2 CAGCATTTTCTACTAAAGAATGTAATGGAGAGTAGGCTGAAGCGGCTCTACTCATGTGAT *************************** ************** ************** ** HS_haplotype1 GTTTTATAGACAGCATTAACTCCTAATAATGGGTAGGAAGAAATGTTGAGGGATTTTGAA HS_assemblymutate_np1212 TTTTTATAGACAGCATTAACTCCTAATAATGGGTAGGCAGAAATGTTGAGGGATTTTCAA HS_haplotype2 TTTTTATAGACAGCATTAACTCCTAATAATGGGTAGGCAGAAATGTTGAGGGATTTTCAA ************************************ ******************* ** HS_haplotype1 ACATCTACCATGCTTAAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG HS_assemblymutate_np1212 ACATCTACCATGCTTTAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG HS_haplotype2 ACATCTACCATGCTTTAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG *************** ******************************************** HS_haplotype1 ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC HS_assemblymutate_np1212 ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC HS_haplotype2 ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC ************************************************************ HS_haplotype1 TATTTAAAGGATGGCTTCACATGTTCACGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT HS_assemblymutate_np1212 TATTTAAAGGATGGCTTCACATGTTCAGGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT HS_haplotype2 TATTTAAAGGATGGCTTCACATGTTCAGGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT *************************** ******************************** HS_haplotype1 ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATGAGGCTTATTGTCT HS_assemblymutate_np1212 ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATCAGGCTTATTGTCT HS_haplotype2 ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATCAGGCTTATTGTCT ********************************************** ************* HS_haplotype1 GGGTTTCAGTCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACATCATGCCCGGCTCA HS_assemblymutate_np1212 GGGTTTCAATCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACAACATGCCCGGCTCA HS_haplotype2 GGGTTTCAATCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACAACATGCCCGGCTCA ******** ************************************* ************* HS_haplotype1 CTCCTGCCTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG HS_assemblymutate_np1212 CTCCTGCGTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG HS_haplotype2 CTCCTGCGTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG ******* **************************************************** HS_haplotype1 ACTATCTTTCCTTCCAGGAGAGGTAGAGATTGCTGTTTCCATGGGTGTATACATACTCGG HS_assemblymutate_np1212 ACTATCTTTCCTTCCAGGAGAGGTAGAGATTGCTGTTTCCATGGGTGTATACATACTCGG HS_haplotype2 ACTATCTTTCCTTCCAGGAGAGGTTGAGATTGCTGTTTCCATGGGTATATACATACTCGG ************************ ********************* ************* HS_haplotype1 GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC HS_assemblymutate_np1212 GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC HS_haplotype2 GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC ************************************************************ HS_haplotype1 AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA HS_assemblymutate_np1212 AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA HS_haplotype2 AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA ************************************************************ HS_haplotype1 GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG HS_assemblymutate_np1212 GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG HS_haplotype2 GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG ************************************************************ HS_haplotype1 CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA HS_assemblymutate_np1212 CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA HS_haplotype2 CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA ************************************************************ HS_haplotype1 GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC HS_assemblymutate_np1212 GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC HS_haplotype2 GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC ************************************************************ HS_haplotype1 TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG HS_assemblymutate_np1212 TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG HS_haplotype2 TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG ************************************************************ HS_haplotype1 TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA HS_assemblymutate_np1212 TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA HS_haplotype2 TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA ************************************************************ HS_haplotype1 AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC HS_assemblymutate_np1212 AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC HS_haplotype2 AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC ************************************************************ HS_haplotype1 TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA HS_assemblymutate_np1212 TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA HS_haplotype2 TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA ************************************************************ HS_haplotype1 ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT HS_assemblymutate_np1212 ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT HS_haplotype2 ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT ************************************************************ HS_haplotype1 CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC HS_assemblymutate_np1212 CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC HS_haplotype2 CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC ************************************************************ HS_haplotype1 AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG HS_assemblymutate_np1212 AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG HS_haplotype2 AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG ************************************************************ HS_haplotype1 GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG HS_assemblymutate_np1212 GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG HS_haplotype2 GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG ************************************************************ HS_haplotype1 CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA HS_assemblymutate_np1212 CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA HS_haplotype2 CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA ************************************************************ HS_haplotype1 GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG HS_assemblymutate_np1212 GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG HS_haplotype2 GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG ************************************************************ HS_haplotype1 AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT HS_assemblymutate_np1212 AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT HS_haplotype2 AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT ************************************************************ HS_haplotype1 TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT HS_assemblymutate_np1212 TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT HS_haplotype2 TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT ************************************************************