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Search by position or name
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Search using a sequence name, gene name, locus, or other landmark.
The wildcard character * is allowed
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New goldenpath and annotation (download)
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The assembly has been improved (V8) by using a new fosmid library (around 6x of clone
coverage). A new geneset was built (V8.2) including the large collection of Teleostei public ESTs,
the latest Uniprot version, and a variety of other predictions. The final gene models were
designed using the Gaze framework.
Warning : The genome browser displays the previous goldenpath and annotation versions !
last update : 15/03/2007
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Browse a chromosome
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The centromere is in black, and the chromosome coverage is shown in blue.
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Assembly summary - V7 - (download)
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Number
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N50 length (kb)
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Coverage of the genome
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Contigs
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49,609
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16
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91.9%
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Supercontigs
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25,773
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731
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100.7%
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Ultracontigs
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128
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1,382
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80.5%
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Mapped ultracontigs
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39
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7,601
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64.2%
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Annotation summary - V7.1 - (download)
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Annotated genes
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27,918
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Annotated transcripts
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27,918
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Average number of coding exons per gene
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6.9
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Average number of UTR exons per gene
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0.4
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Average gene size (bp)
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4,778
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Average CDS size (bp)
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1,230
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Average exon size (bp)
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178 |
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