merSize               = 17
merThreshold          = 0
merDistinct           = 0.9995
merTotal              = 0.995

doOBT                 = 1

unitigger             = bogart

ovlErrorRate          = 0.15  #  Compute overlaps up to 15% error
utgGraphErrorRate     = 0.1  #  Unitigs at 10% error
utgMergeErrorRate     = 0.1  #  Unitigs at 10% error
cnsErrorRate          = 0.15  #  Needed to allow ovlErrorRate=0.15
cgwErrorRate          = 0.15  #  Needed to allow ovlErrorRate=0.15

ovlConcurrency        = 24
cnsConcurrency        = 24

ovlThreads            = 1
ovlHashBits           = 22
ovlHashBlockLength    = 10000000
ovlRefBlockSize       = 10000

#cnsReduceUnitigs      = 0 0   #  Always use only uncontained reads for consensus
cnsReuseUnitigs       = 1     #  With no mates, no need to redo consensus

cnsMinFrags           = 100
cnsPartitions         = 64