MUSCLE (3.8) multiple sequence alignment
HS_haplotype1 AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG
HS_assemblymutate_np1212 AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG
HS_haplotype2 AATAGGCAGATTAAAGATAAAGAGCGAGCTGGGATGGTGCCTGCTGAAGTTCCTCTACAG
************************************************************
HS_haplotype1 GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA
HS_assemblymutate_np1212 GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA
HS_haplotype2 GAACTCCGGACCTAAAAAATGCCGCTCTGTAACCAGATATATTTATAGTTCTAGGTAATA
************************************************************
HS_haplotype1 ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC
HS_assemblymutate_np1212 ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC
HS_haplotype2 ATATGCGAGATTAGCCGGGGAATTCTTCTATTATTGGATATTACTACTCATGAAATAAAC
************************************************************
HS_haplotype1 ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT
HS_assemblymutate_np1212 ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT
HS_haplotype2 ACAGGGCTCAATATCAATGATGCTGACCAGGGCCGGGATGGCATTCAGATGAGGCAGGTT
************************************************************
HS_haplotype1 CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT
HS_assemblymutate_np1212 CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT
HS_haplotype2 CCATTTTTATGCTGCTTCCTGATTTTGGGATAGAGATGGGGCGCAAAGAGTCGTTGTGGT
************************************************************
HS_haplotype1 TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC
HS_assemblymutate_np1212 TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC
HS_haplotype2 TCCTTACAGGGAAGTGTGGCCCTCACTACCCTGGGAGGTGCCTTCTTTTTTTTATTGCCC
************************************************************
HS_haplotype1 AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG
HS_assemblymutate_np1212 AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG
HS_haplotype2 AATCCAAGGAAAGTATTTTGTGATGAATCCCGCCTGGGAAAGGTACATTCTTTTGGGGAG
************************************************************
HS_haplotype1 TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG
HS_assemblymutate_np1212 TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG
HS_haplotype2 TTATAGAATCAGTTGAAAAGAAAGATTAGATAGACTGTATGACAACTTGGCCCCTCAGGG
************************************************************
HS_haplotype1 CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA
HS_assemblymutate_np1212 CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA
HS_haplotype2 CCAGGCCGAGTCTCTATCTGGATTCCCCTGCCATGAGTAGCAGGAAATAGGGGCTCTAGA
************************************************************
HS_haplotype1 GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC
HS_assemblymutate_np1212 GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC
HS_haplotype2 GAGGAACTCTGGTCACTACTGAACAGATGTCTGACAAAAATGATTAAAAGACTATGCCCC
************************************************************
HS_haplotype1 ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC
HS_assemblymutate_np1212 ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC
HS_haplotype2 ACCCCACCATGCCTATATTTCGATGGCACATGTAAAAAGTGACCAAGTAATCCCAATTTC
************************************************************
HS_haplotype1 CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC
HS_assemblymutate_np1212 CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC
HS_haplotype2 CAAAACACCTCGGCTCAAGCAGGGCAACATTGCGTGGAGCACTTCAGCTTTATTTTGGTC
************************************************************
HS_haplotype1 CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA
HS_assemblymutate_np1212 CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA
HS_haplotype2 CAACCGACTTGTGTGGTTTATTCTTAATATATTTCTGGGGCGCCCATCTCTAGGGCAGCA
************************************************************
HS_haplotype1 TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA
HS_assemblymutate_np1212 TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA
HS_haplotype2 TGGTTAGATTATGCGGAAGTTTATTAAATGAAAGTGACATTCTATTATCAAAAGGGGCCA
************************************************************
HS_haplotype1 TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC
HS_assemblymutate_np1212 TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC
HS_haplotype2 TTTTATGCTTTTTCAACATAAACTCCAGCTCATAGTCAGAGGACACACATCTGTATTTTC
************************************************************
HS_haplotype1 AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA
HS_assemblymutate_np1212 AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA
HS_haplotype2 AAAATAAAGCAGCCTGAGGCCATTTTTGCTGTGCACTAATTTGTAGTTTTTGGCTCTTCA
************************************************************
HS_haplotype1 TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTCTTAGGTATTG
HS_assemblymutate_np1212 TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTCTTAGGTATTG
HS_haplotype2 TGGACATGAACGGTGGAGAAAGGGAGGAATCTGCCCTATAGATGCCTGTTTTACGTATTG
************************************************* *** ******
HS_haplotype1 GCCTCCTTCTGTCATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT
HS_assemblymutate_np1212 GCCTCCTTCTGTCATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT
HS_haplotype2 GCCTCCTTCTGTGATGTCATGCCCCGCCACAGCCACCCAAATGTCATAGTTGCTGGGAGT
************ ***********************************************
HS_haplotype1 CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCAACAGGACATTGTATTTCTTCCT
HS_assemblymutate_np1212 CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCAACAGGACATTGTATTTCTTCCT
HS_haplotype2 CCACGGTCAGCTACTTTTTTGTGAGGTGATCTGTGCCGACAGGACATTGTATTTCTTCCT
************************************* **********************
HS_haplotype1 ATGGTTTTGAATTGGCCAAGGACATACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA
HS_assemblymutate_np1212 ATGGTTTTGAATTGGCCAAGGACATACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA
HS_haplotype2 ATGGTTTTGAATTGGCTAAGGACAAACTCTTCTGCCTCCCTGACTTCCCTGCACTCCACA
**************** ******* ***********************************
HS_haplotype1 ACTCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGAGT
HS_assemblymutate_np1212 AATCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGGGT
HS_haplotype2 AATCTTTGAGTAGGAGTCAACAGAAGTATCATATTCTAAGACTAATTTGCATTCCTGGGT
* ******************************************************* **
HS_haplotype1 GAATATATGCTCTGCCCCTCCCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA
HS_assemblymutate_np1212 GAATATATCCTCGGCCCCTCCCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA
HS_haplotype2 GAATATATCCTCGGCCCCTCCCTGTAGCTTGAACACTTTCCTAATTTGAGAGGATGTTGA
******** *** ***********************************************
HS_haplotype1 CATCTCTGATCAAAATATCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT
HS_assemblymutate_np1212 CATCTCTGATCAAAATGTCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT
HS_haplotype2 CATCTCTGATCAAAATGTCAACCTTCGGCCAGGGCAAACTCCATTTAAAAACTATTGCCT
**************** *******************************************
HS_haplotype1 CCCAGCAGTGCTGGACTACACGATAAACCTAGGCATTCTGGACGGGGCCGCGGCTAATTA
HS_assemblymutate_np1212 CCCAGCAGTGCTGGACTACTCGATAAACCTAGGCATTCTGGACGGGGCCGCGGCGAATTA
HS_haplotype2 CCCAGCAGTGCTGGACTACTCGATAAACCTAGGCATTCTGGACGGGGCCGCGGCGAATTA
******************* ********************************** *****
HS_haplotype1 AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG
HS_assemblymutate_np1212 AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG
HS_haplotype2 AAAACAATTCAGCCACCCAAACAAATGCAAAAACAAAAGTTTAGGCCTAGGCAGCTGGAG
************************************************************
HS_haplotype1 GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAATTTTCACCTGTGTGATAAGGGG
HS_assemblymutate_np1212 GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAGTTTTCACCTGTGTGATAAGGGG
HS_haplotype2 GTCAGTTTACTGAACTATGAAATGAGGACAGTCTCTAGTTTTCACCTGTGTGATAAGGGG
************************************* **********************
HS_haplotype1 CCCAGCTACCTGTGTGTGCATTGTGATTTATTTTTGCATTGCACCGGAACTGACTGTATC
HS_assemblymutate_np1212 CCCAGCTACCTGTGTGTGCATTGTGATTTATTTTTGCATTGCACCGGAACTGACTGTATC
HS_haplotype2 CCCAGCTACCTGTGTGTGCATTGTGATTTATTTTTGCATTGCACCGGAACTGACTGTATC
************************************************************
HS_haplotype1 TGGAATACTCTCTCAGCTGACAGCAGCCTCTATTGTCTAACAACCCAGGTGCAATCAGAG
HS_assemblymutate_np1212 TGGAATACTCTCTCAGCTGACAGCAGCCTCTGTTGTCTAACAACCCAGGTGCAATCAGAG
HS_haplotype2 TGGAATACTCTCTCAGCTGACAGCAGCCTCTGTTGTCTAACAACCCAGGTGCAATCAGAG
******************************* ****************************
HS_haplotype1 TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC
HS_assemblymutate_np1212 TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC
HS_haplotype2 TCAGGTGACCAGCAGTTTGTCTGGATCGATTCTCAACGTATCAGCTCTTAGTTTCATACC
************************************************************
HS_haplotype1 TTTCCTCAGGACTGTGTTTCATGCGCTGTTTCTAGAAACACCAGCCCTGGGATCACAGTA
HS_assemblymutate_np1212 TTTCCTCAGGACTGTGTTTCATGCGCTGTTTCTAGAAACACCAGCCCTGGTATCAAAGTA
HS_haplotype2 TTTCCTCAGGACTGTGTTTCATCCGCTGTTTCTAGAAACACCAGCCCTGGTATCAAAGTA
********************** *************************** **** ****
HS_haplotype1 CGAGCCACCACCTAGGTCTAGACATGACCAAAACCAACTTAGAAAATATTTGAGACAGGA
HS_assemblymutate_np1212 CCAGCCACCACCTAGGTCTAGACATGACCAAGACCAACTTAGAAAATATTTGAGACAGGA
HS_haplotype2 CCAGCCACCACCTAGGTCTAGACATGACCAAGACCAACTTAGAAAATATTTGAGACAGGA
* ***************************** ****************************
HS_haplotype1 CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT
HS_assemblymutate_np1212 CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT
HS_haplotype2 CTGAATGGTGAGACAGGCAGGGGGATTTAATCCCGGTGGGATAGCCTACAATAGTTTTAT
************************************************************
HS_haplotype1 CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCACCTGAGTCATTC
HS_assemblymutate_np1212 CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCACCTGAGTCATTC
HS_haplotype2 CCAAGGAAATCTGTTCTTTCCCAATCAAATTTTCAGTATTTGTCATCAACTGAGTCATTC
************************************************ ***********
HS_haplotype1 GAGATGGGGATCCATGCCAACCCCTAAGGTCAGATGGGTCACCTCTCTGCAGGCATGGAT
HS_assemblymutate_np1212 GAGATGGGGATCCATGCCAACCCCTAAGGTCAGATGGGTCACCTCTCTGCAGGCATGGAT
HS_haplotype2 GAGATGGGGATCCATGCCAACCCCTAAGGACAGATGGGTCACCTCTCTGCAGGCATGGAT
***************************** ******************************
HS_haplotype1 GAAATATAAAAGAAACTGAGGTTGAATTAAGGAATGCCCTCCTCTGCATTTACTAATTTC
HS_assemblymutate_np1212 GAAATATAAAAGAAACTGAGGTTGAATTAAGGAATGCCCTCCTCTGCATTTACTAATTTC
HS_haplotype2 GAACTATAAAAGAAACTGAGGTTGAATTAAGGAATGCTCTCCTCTGCATTTACTAATTTC
*** ********************************* **********************
HS_haplotype1 ATCCTACTCTGTCTTGGAGGAATAGAAAAACTCCTAGTTGGACAACAGATTTTAGTAGAA
HS_assemblymutate_np1212 ATCCTACTCTGTCTTGGAGGAATAGAAAAACTCCTAGTTGGACAACAGATTTTAGTAGAA
HS_haplotype2 ATCCTACTCTGGCTAGGAGGAATAGAAAAACTCCTAGGTGGACAACAGATTTTAGTAGAA
*********** ** ********************** **********************
HS_haplotype1 GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCG
HS_assemblymutate_np1212 GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCG
HS_haplotype2 GATACACTCCTAGGTCCCAGGAGTGCAGTGCAATCCCAGGCTGCACAAATCTATCAAGCA
***********************************************************
HS_haplotype1 GGGTTTTCATCCCCGAGAAATAAGACTAATTGGTCCCTGGAATGCTGGGCAGATCGCGAT
HS_assemblymutate_np1212 GGGTTTTCATCCCCGAGAAATAAGACTAATTGGTCCCTGGAATGCTGGGCAGATCGCGAT
HS_haplotype2 GGGTTTTCATCCCCGAGAAATAAGGCTAATTGATCCCTGGAATGCTGGGCGGATCGCGAT
************************ ******* ***************** *********
HS_haplotype1 CTGCCCATGCTAATGGAGAAGAAAGTATTTGGCTTGGGCAAGGTACCTGAGGAGGAGCTA
HS_assemblymutate_np1212 CTGCCCATGCTAATGGAGAAGAAAGTATTTGGCTTGGGCAAGGTACCTGAGGAGGAGCTA
HS_haplotype2 CTGCCCATGCTTATGGAGAAGAAAGTATTTGGCTTGGGCCATGTACCTGAGGAGGAGCTA
*********** *************************** * ******************
HS_haplotype1 TCAAACATCTTAGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTAGAGCTTTTC
HS_assemblymutate_np1212 TCAAACATCTTAGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTAGAGCTTTTC
HS_haplotype2 TCAAACATCTTGGATCGTCTCGGCTAAGTTGGCAAGGCTGACAAGATACTTGAGCTTTTC
*********** ************************************** *********
HS_haplotype1 TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG
HS_assemblymutate_np1212 TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG
HS_haplotype2 TCACTATTACTTTCCAGAAATTAATCTTCCCTAGCCGGCTCAAGACCTCTATTGTGGTGG
************************************************************
HS_haplotype1 TGCGCGAGTAGTCCCTTCCTCTCTGTCATCCCAATCATGGATTTGTTTCCAGTTCAAGAC
HS_assemblymutate_np1212 TGCGCGAGTAGTCCCTTCCTCTCTGTCACCCCAATCATGGATTTGTTTGCAGTTCAAGAC
HS_haplotype2 TGCGCGAGTAGTCCCTTCCTCTCTGTCACCCCAATCATGGATTTGTTTGCAGTTCAAGAC
**************************** ******************* ***********
HS_haplotype1 TTAGCAGGCTGGTTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT
HS_assemblymutate_np1212 TTAGCAGGCTGGGTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT
HS_haplotype2 TTAGCAGGCTGGGTCTGAGCATATGGTGGTGTGTGATACTATATTTCTCATAACTTGAAT
************ ***********************************************
HS_haplotype1 TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAA
HS_assemblymutate_np1212 TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAA
HS_haplotype2 TAGGGATGATTGGCAAGCAGCACTTAAGATGCGGATCAAGGAAAGTGAGGGGCAGGACAC
***********************************************************
HS_haplotype1 ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA
HS_assemblymutate_np1212 ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA
HS_haplotype2 ATTTGCATTGTCTGGGGAGAGCCTACCTTCGTTGTCCCCGAGGAGATCCTAGGAGGATGA
************************************************************
HS_haplotype1 AGAGAGGTCGGCTGCCACATATTTGCCCAGGGAATTTCAATGGGAGGGCGTGGTAGGCGG
HS_assemblymutate_np1212 AGAGAGGTCGGCTGCCACATATCTGCCCAGGGAATTTCAATGGGAGGGCATGGTAGGCGG
HS_haplotype2 AGAGAGGTCGGCTGCCACATATCTGCCCAGGGAATTTCAATGGGAGGGCATGGTAGGCGG
********************** ************************** **********
HS_haplotype1 AAGAAGGCACCTCTGGTCTAGCGTTTTAAAACAGAATCGCTGTTCCCCAGGGTCCTAGCC
HS_assemblymutate_np1212 AAGAAGGCACCTCTGGTCTAACGTTTTAAAACAGAATCGCACCTCCCCAGGGTCCTAGCC
HS_haplotype2 AAGAAGGCACCTCTGGTCTAACGTTTTAAAACAGAATCGCACCTCCCCAGGGTCCTAGCC
******************** ******************* *****************
HS_haplotype1 AAGCATGAATATTTGCTGCCACAACCAAGGCTCAAGACTCTGAATTGACTCTCGACCAGC
HS_assemblymutate_np1212 AAGCATGAATATTTGCTGCCACAACCAAGGCTCAAGACTCTGAATTGACTCTCGACCAGC
HS_haplotype2 AAGCATGAATATTTGCTGCCACAACCAAGGCTCAAGACTCTGAATTGACTCTCGACCAGC
************************************************************
HS_haplotype1 GCATATATTTCAAATTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA
HS_assemblymutate_np1212 GCATATATTTCAAATTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA
HS_haplotype2 GCATATATTTCAAATTATCTTAGGGGCACAGTTTATTCAGAGTAATTTCTTTTCTGTATA
************************************************************
HS_haplotype1 GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA
HS_assemblymutate_np1212 GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA
HS_haplotype2 GGTAATCTCAGAACTGATGCTGAGGGGGGAAACATGAAGGTGACTTTGAGTACAAATTTA
************************************************************
HS_haplotype1 AAGAAATGTGGACCAGGGAGCTAATCGATGTGAGACTCTAGGAGAGGGGTCTCCATTAGA
HS_assemblymutate_np1212 AAGAAATGTGGACCAGGGAGCTAATCGACGTGAGACTCTAGGAGAGGGGTCTCCATTAGA
HS_haplotype2 AAGAAATGTGGACCAGGGAGCTAATCGACGTGAGACTCTAGGAGAGGGGTCTCCATTAGA
**************************** *******************************
HS_haplotype1 GACAGGAGATGTTTTAGAGGCCCAGCTAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA
HS_assemblymutate_np1212 GACAGGAGATGTTTTAGAGGCCCAGCTAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA
HS_haplotype2 GACAGGAGATGTTTTAGAGGCCCAGCTAACTAAGGAGCAGAAAGAGTTGAGGTTTAGCTA
************************************************************
HS_haplotype1 CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA
HS_assemblymutate_np1212 CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA
HS_haplotype2 CGCGTGAGCGATTTTTCTCCTGGAGAGCAGTGGGAACTCAGACCACGGGAGGCCGGAGCA
************************************************************
HS_haplotype1 TTATTAATTTTTTCTGTAAGTGCTGACTTCATAAAGATAAATTATTATCCGCCTACAGGC
HS_assemblymutate_np1212 TTATTAATTTTTTCTGTAAGTGCTGACTTCATAAAGATAAATTATTATCCGCCTACAGGC
HS_haplotype2 TTATTAATTTTTTCTGTAAGTGCTGACTTCATAAAGATAAATTATTATCCGCCTACAGGC
************************************************************
HS_haplotype1 TGGAGAATGTTTGGATATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCC
HS_assemblymutate_np1212 TGGAGAATGTTTGGAAATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCA
HS_haplotype2 TGGAGAATGTTTGGAAATTATGTCATCTCTAACCTCCCACAGAAGTAGATTGCCCACCCA
*************** *******************************************
HS_haplotype1 GGATTGCTTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA
HS_assemblymutate_np1212 GGATTGCTTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA
HS_haplotype2 GGATTGCCTTATTACACCTGTGTGGGAGAAAGGGACACTGCCTTCCTAGGATGAGTCCAA
******* ****************************************************
HS_haplotype1 GAAAAAATGGGCATTTAAGTCCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC
HS_assemblymutate_np1212 GAAAAAATGGGCATTTAAGTCCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC
HS_haplotype2 GAAAAAATGGGCATTTAAGACCCACCACGTTAGTAGAAATAAACCTTTGGAGTGCTACTC
******************* ****************************************
HS_haplotype1 CCAAGCTGTGGACAGGTCACTGAGAGGTATATGTTTTAACTGCAAACTTGTATTAATTGG
HS_assemblymutate_np1212 CCAAGCTGTGGACAGGTCACTGAGAGGTATATGTTTTAACTGCAATCTTGTATTAATCGG
HS_haplotype2 CCAAGCTGTGGACAGGTCACTGAGAGGTATATGTTTTAACTGCAATCTTGTATTAATCGG
********************************************* *********** **
HS_haplotype1 GTGACTGACTTGAGGCTGTCACTGTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG
HS_assemblymutate_np1212 GTGACTGACTTGAGGCTGTCACTTTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG
HS_haplotype2 GTGACTGACTTGAGGCTGTCACTTTAAATCAGTCTCGGCTGGCTAGGAGGTCCAGGAACG
*********************** ************************************
HS_haplotype1 TGCCCTCCTTCGGGTGAGCTTGGGTCACTACTACAGGAAGAATGAGTATAAATTGCTGAG
HS_assemblymutate_np1212 TGCCCTCCTTCGGGTGACCTTGGGACACTACTACAGGAAGAATGAGTATAAATTGCTGAG
HS_haplotype2 TGCCCTCCTTCGGGTGACCTTGGGACACTACTACAGGAAGAATGAGTATAAATTGCTGAG
***************** ****** ***********************************
HS_haplotype1 TTTCATGGATCTGACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA
HS_assemblymutate_np1212 TTTCATGGATTTCACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA
HS_haplotype2 TTTCATGGATTTCACTTCAGGTGCTGACAGAGTGCGTTGCTAGTATATGGGGTGAGGCGA
********** * ***********************************************
HS_haplotype1 TTCTTCTCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG
HS_assemblymutate_np1212 TTCTTCCCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG
HS_haplotype2 TTCTTCCCGGGGGAGTAGGTCAGCCCTATAGGAAGTTTGAAGGGCCCCCTGCCTGTCTTG
****** *****************************************************
HS_haplotype1 TAAATTCTTCTCCCCGTCTACCACGGGTTTTGAACTGATGCGCTCAGTACTCAGATGGCT
HS_assemblymutate_np1212 TAAATTCTTCACCCCTTCTACCACGGGTTTTGAACTGATGGGCTCAGTACTCAGATGGCA
HS_haplotype2 TAAATTCTTCACCCCTTCTACCACGGGTTTTGAACTGATGGGCTCAGTACTCAGATGGCA
********** **** ************************ ******************
HS_haplotype1 AGATGTTTAAACACCACATTTCTTGCCTCAATAACTGGTCAGGGGTAGTGGAGAGGGTTT
HS_assemblymutate_np1212 AGGTGTTTAAACACCACATTTCTTGCCTCAATTACTGGTCTGGGGTAGTGGAGAGGGTTT
HS_haplotype2 AGGTGTTTAAACACCACATTTCTTGCCTCAATTACTGGTCTGGGGTAGTGGAGAGGGTTT
** ***************************** ******* *******************
HS_haplotype1 GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACAGA
HS_assemblymutate_np1212 GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACGGA
HS_haplotype2 GTCTCACAGCATCCTAAGGGTGTCTCAGGAAATAAAAATTACAGAGCAGAATTAAACGGA
********************************************************* **
HS_haplotype1 TGAACCCTATGCCATTCTTATACATGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA
HS_assemblymutate_np1212 TGAACCCTATGCCATTCTTATACAAGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA
HS_haplotype2 TGAACCCTATGCCATTCTTATACAAGAGCAGCGTGCCGCAGTGCTGAGCTTGGTAGGAGA
************************ ***********************************
HS_haplotype1 CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATTTTTTGTCTGTATCTGTTAACTTCA
HS_assemblymutate_np1212 CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATCTTTTGTCTGTATCTGTTAACTTCA
HS_haplotype2 CGATGGAAAGTAGAGTTTTTAAATACCTGGAATATCTTTTGTCTGTATCTGTTAACTTCA
*********************************** ************************
HS_haplotype1 GGCAAATCAAAAAACATGGGGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC
HS_assemblymutate_np1212 GGCAAATCAAAAAACATGGGGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC
HS_haplotype2 GGCAAATCAAAAAACATGGGGAACTCCACGGTACCTCACAGGTTCTCCCAGTGTCCATAC
************************************************************
HS_haplotype1 ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG
HS_assemblymutate_np1212 ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG
HS_haplotype2 ACTAGAGGCCTGGTGGACTACCTCCCCATCTTTTTTGGGCCGACTGGGGTCAGCCTGATG
************************************************************
HS_haplotype1 TGCCTTAGTTAGCTATAATAGGAGCAGCTACTCATTTGACACATGATTAAACGAATGCAT
HS_assemblymutate_np1212 TGCCTTAGTTAGCTATAATAGGAGCAGCTACTCATTTGACACATGTTTAAACGAATGCAT
HS_haplotype2 TGCCTTAGTTAGCTATAATAGGAGCTGCTACTCATTTGACACATGTTTAAACGAATGCAT
************************* ******************* **************
HS_haplotype1 AGACCCCCATTTCAACTCAGGTGGCTAATATGGTAAACCTATTTGTATGACCTTGGTTTG
HS_assemblymutate_np1212 AGACCCCCATTTCAACTCAGGTGGCTAATATGGTTAACCTATTTGTATGACCTGGGTTTG
HS_haplotype2 AGACCCCCATTTCAACTCAGGTGGCTAATATGGTTAACCTATTTGTATGACCTGGGTTTG
********************************** ****************** ******
HS_haplotype1 TCCCACTGCAAACGGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT
HS_assemblymutate_np1212 TCCCCCTGCAAACAGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT
HS_haplotype2 TCCCCCTGCAAACAGTTACAGATGGGCTGTGTTGCATGTCTAGCCCAAACTGTAATGAGT
**** ******** **********************************************
HS_haplotype1 GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCACCAGTTCCCGAGTAT
HS_assemblymutate_np1212 GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCACCAGTTCCCGAGTAT
HS_haplotype2 GTGGGTCTCCTGTCCAGACAGATGTTCCCTTTGGTGCAGTGCCCATCAGTTCCCGAGTAT
********************************************* **************
HS_haplotype1 CTAAAAAATGTCTCACACTCTCTTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT
HS_assemblymutate_np1212 CTAAAAAATGTCTCACACTCTCTTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT
HS_haplotype2 CTAAAAAATGTCTCACACTTTCCTCAAAAAGAGACCACATGGGCTCAGCTAGAGAGTACT
******************* ** *************************************
HS_haplotype1 CAAAGTATTATAATGGCCCAAATAAGCATACAGGAGGCAACAGACAGGGGTTAGCCGCAT
HS_assemblymutate_np1212 CAAAGTATTATAATGGCCCAAATAAGCATACAGGAGGCAACAGAAAGGGGTTAGCCGCAT
HS_haplotype2 CAAAGTATTATAATGGCCCAAATAAGCATACAGGAGGCAACAGAAAGGGGTTAGCCGCAT
******************************************** ***************
HS_haplotype1 GTGGGAGGTAATATACTACTTGCCTCTTCATTTAAACATATGAGATCTTGGTAAGTCTAT
HS_assemblymutate_np1212 GTGGGAGGTAATATACTATTTGCCTCTTCATTTAAACATATGATATCTTGGTAAGTCTAT
HS_haplotype2 GTGGGAGGTAATATACTATTTGCCTCTTCATTTAAACATATGATATCTTGGTAAGTCTAT
****************** ************************ ****************
HS_haplotype1 TATCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA
HS_assemblymutate_np1212 TACCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA
HS_haplotype2 TACCAAGTATCTAGCTAATGCCACTGAATTTTAGCCAAATGAAAACATTTTCCCTTCCCA
** *********************************************************
HS_haplotype1 TGTGGCGCTCTGCAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG
HS_assemblymutate_np1212 TGTGGCGCTCTGTAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG
HS_haplotype2 TGTGGCGCTCTGTAGCTTCCAACCAGAGGAGTTCTGATGGCAGGAGAAGAGTAGACTGAG
************ ***********************************************
HS_haplotype1 CCTCACCTTAGAACGACTTTCTCAATTCTCCCTGACGCCCTAACATGTGGGTGAGGCTTT
HS_assemblymutate_np1212 CCTCACCTTAGAACCACTTTCTCAATTCTCCCTGACGCCCTAACATGTGGGTGAGCCTTT
HS_haplotype2 CCTCACCTTAGAACCACTTTCTCAATTCTCCCTGACGCCCTAACATGTGGGTGAGCCTTT
************** **************************************** ****
HS_haplotype1 ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCGCTGGGAACTTAGCC
HS_assemblymutate_np1212 ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCTCTGGGAACTTAGCC
HS_haplotype2 ATTAGATTATTTCAGTTCACCCACAGGCAGCAGGTCACAGCTTGCTCTGGGAACTTAGCC
********************************************* **************
HS_haplotype1 TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT
HS_assemblymutate_np1212 TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT
HS_haplotype2 TGATATAAGGAAACCGGAGAGGTCGGCCCTGCCTCTTTGCAAGAAATGTTCCATTTTATT
************************************************************
HS_haplotype1 GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT
HS_assemblymutate_np1212 GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT
HS_haplotype2 GCTATGAATCAAAATTATAATTTTCAGCTTGGGGACTTTTCCCAAATGAATGGACAGATT
************************************************************
HS_haplotype1 AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC
HS_assemblymutate_np1212 AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC
HS_haplotype2 AAATTGTACGTGCCCGGCCTTGCGCCTGTATTGTAACGGGGCAATTAGGCCACCCCAGGC
************************************************************
HS_haplotype1 TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCATAGTAAGTA
HS_assemblymutate_np1212 TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCATAGTAAGTA
HS_haplotype2 TTATTGACTTCTGTCTCTTACTGACTAGTCTTTACCAAGACCTACAGTGCCTAGTAAGTA
************************************************** *********
HS_haplotype1 CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA
HS_assemblymutate_np1212 CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA
HS_haplotype2 CCATCTGTATGGAAGGAGGCGTGATTTTTGAGCTGTGTAAAATTTCATTGCCTGAAGAGA
************************************************************
HS_haplotype1 GCCAAAGTGCTGAGGTCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAGTCGAG
HS_assemblymutate_np1212 GCCAAAGTGCTGAGGCCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAATAGAG
HS_haplotype2 GCCAAAGTGCTGAGGCCAAAGGGAGGCTGGGTGCTCGGGGTATAGACACAATGAATAGAG
*************** ************************************** * ***
HS_haplotype1 CGATTTAGCCATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT
HS_assemblymutate_np1212 CGATTTAGCTATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT
HS_haplotype2 CGATTTAGCTATAATTCTCTACATATGAGTCTGTGGGTGATTGTGCCAAAGGGGTTCAAT
********* **************************************************
HS_haplotype1 GGGGACTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCTTCTTAAACAAATTAT
HS_assemblymutate_np1212 GGGGACTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCTTCTTAAACAAATTAT
HS_haplotype2 GGGGGCTAACCAAGAGGGGGTGCCCTGTCCTAGATAATTTTATCATCTTAAAAAAATTAT
**** *************************************** ******* *******
HS_haplotype1 CTTTGAATTTTCTATTCACTTGCTTGTTCAAACCATTATTGTGGCCAGTTGAGACATAAA
HS_assemblymutate_np1212 CTTTGAATTTTCTATTCACTTGCTTGTTCAAACCATTATTGTGGCCAGTTGAGACATAAA
HS_haplotype2 CTTTGAATTTTCTATACACTTGCTTGTTCAAACCATCATTGTGGCCAGTTGAGACATAAA
*************** ******************** ***********************
HS_haplotype1 TACTCTAACAAGGCAGGAGGAAGCAGTGACATGGGTGAGACCTACCTTGCCATATAGTAG
HS_assemblymutate_np1212 TACTCTAATAAGGCAGGAGGAAGCAGTGACATGGGTGAGACCTACCTTGCCATATAGTAG
HS_haplotype2 TACTCTAATAAGGCAGGAGGAAGCAGTGAGATGGGGGAGACCTACCTTGCCATATAGTAG
******** ******************** ***** ************************
HS_haplotype1 ACTGGTAAGGTTCTTATATGCGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC
HS_assemblymutate_np1212 ACTGGTAAGGTTCTTATATGCGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC
HS_haplotype2 ACTGGTAAGGTTCTTATATGCGCGGCTCACATTTCCTGTAAAGAAAAATTGAATTAAGTC
************************************************************
HS_haplotype1 ACAAAATATGTTCTGCGCTGGCAATCTCTGGAGGGGACCATCAGTGAGTGAAAACATTAA
HS_assemblymutate_np1212 ACAAAATATGTTCTGCGCTGGCAATCTCTGGAGGGGACCATCAGTGAGTGAAAACATTAA
HS_haplotype2 ACAAAATATGTTCTGTGCTGGCACTCTCTGGAGGGGACCATCAGTGGGTGAAAACATTAA
*************** ******* ********************** *************
HS_haplotype1 GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCTACGTGGGAGAGGGAGTTCTAG
HS_assemblymutate_np1212 GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCGACGTGGGACAGGGAGTTCTAG
HS_haplotype2 GGAATGCCTGTAATGTGCTATAGTTTGTAACCCAGAGCGACGTGGGACAGGGAGTTCTAG
************************************** ******** ************
HS_haplotype1 ATGTGGGTCTGTGCATTCCATGCTTGGAGTAAATATAGAACTATGCAAGAAGTGAATACA
HS_assemblymutate_np1212 ATGTGGGTCTGTGCGTTCCATACTAGGAGTATATATAGAACTATGCAAGAAGTGAATACA
HS_haplotype2 ATGTGGGTCTGTGCGTTCCATACTAGGAGTATATATAGAACTATGCAAGAAGTGAATACA
************** ****** ** ****** ****************************
HS_haplotype1 AAGTGAGAGGGAAATAAATCGTCGCTTAAAGAAAGTCAGGGCAGGACTGTGTCACCCAAC
HS_assemblymutate_np1212 AAGTGGGAGGGAAATAAATCGTCGCTTAAAGAAAGTCAGGGCAGGACTGTGTCACCCAAC
HS_haplotype2 AAGTGGGAGGGAAATAAATCGTCGCTTAAAGAGAGTCAGGGCAGGACTGTGTCACCCAAC
***** ************************** ***************************
HS_haplotype1 GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAATCGCTCAATTTTG
HS_assemblymutate_np1212 GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAATCGCTCAATTTTG
HS_haplotype2 GAGATCACCCTTGAGATCCCCTTGGGAAGATAATAGAAATTCTGCAGTCGCACAATTTTG
********************************************** **** ********
HS_haplotype1 AATTGCTCAATTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA
HS_assemblymutate_np1212 AATTGCTCAATTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA
HS_haplotype2 AATTGCTCAACTAAAATCTTACTGCAGATGTTAATACCGCCACAAAATACATTTGACAGA
********** *************************************************
HS_haplotype1 TCATCAGGTGATATGAATTGTTTTATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC
HS_assemblymutate_np1212 TCATCAGGTGATATGAATTGTTTTATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC
HS_haplotype2 TCATCAGGTGATATGAATTGTTATATAAATAATTTTCACAGTTTTCCTCCTGAGTGAAGC
********************** *************************************
HS_haplotype1 AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT
HS_assemblymutate_np1212 AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT
HS_haplotype2 AGTACCTAGTGAAGAATAAAGTGAAGTGAATACAGGCAATTGCCTCCTGGTGGTGCAGCT
************************************************************
HS_haplotype1 CAGCGACAGATATCAGACTCTGAAGGAACTTAGACTTCCTGTCACATTTTTAAGGGGCAA
HS_assemblymutate_np1212 CAGCGACAAATATCAGACTCTGAAGGAACTTAGACTTCCTGTCACATTTTTAAGGGGCAA
HS_haplotype2 CAGCGACAAATATCAGACTCTGAAGGAACTTAGACTTCCTGTCACATTTCTAAGGGGCAA
******** **************************************** **********
HS_haplotype1 GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCATTCTATTAAA
HS_assemblymutate_np1212 GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCATTCTATTAAA
HS_haplotype2 GTAATGCAGTGAAAAAATTAGATAGAAGATTACAGTTTTGTTTGGCTTCACTCTGTTAAA
************************************************** *** *****
HS_haplotype1 ACATAGGCATTTGGAAGGTTTTATATAGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC
HS_assemblymutate_np1212 ACATAGGCATTTGGAAGGTTTTATATAGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC
HS_haplotype2 AAATAGGCATTTGGAAGGTTATATATAGTTTTAGTAGAAGCCTGGGGCTGCGCCGAAACC
* ****************** ***************************************
HS_haplotype1 CCACAGCTGAAGATGCACTTTTTCCTTCTCATTTAGTGACAGGACTTTTTGGACTAAAAG
HS_assemblymutate_np1212 CCACAGCTGTAGATGCACTTTTTCCTTCTCATTTAGTGACAGGACTTTTTAGACTAAAAG
HS_haplotype2 CCACAGCTGTAGATGCACTTTTTCCTTCTCATTTAGTGACAGGACTTTTTAGACTAAAAG
********* **************************************** *********
HS_haplotype1 GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA
HS_assemblymutate_np1212 GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA
HS_haplotype2 GCATGTAGCTTCCTCAATTTAATATCACCCGGGGCCTGGATGTGCATATATCAAGAGATA
************************************************************
HS_haplotype1 TTACATTGCATCTGGATGTATATTCCGGGAGCGGAGTTTTCTTGCTCATCAAAAAACCGT
HS_assemblymutate_np1212 TTACATTCCATCTGTATGTATATTCCGGGAGCTGAGTTTTCTTGCTCATCAAAAGACAGT
HS_haplotype2 TTACATTCCATCTGTATGTATATTCCGGGAGCTGAGTTTTCTTGCTCATCAAAAGACAGT
******* ****** ***************** ********************* ** **
HS_haplotype1 AGCTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT
HS_assemblymutate_np1212 AGTTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT
HS_haplotype2 AGTTCCGTTTCATGATGAACGTGCGCAGCTGCACACGCCCCGCACATTCAATCGCTGGAT
** *********************************************************
HS_haplotype1 ATACTAGACAAACCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT
HS_assemblymutate_np1212 ATACTAGACAAGCCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT
HS_haplotype2 ATACTAGACAAGCCAGGCCGGAGTACTCACTTAACAGATGAGGGAGGGAGTTGCCACATT
*********** ************************************************
HS_haplotype1 TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCCGGACAGGTGCCACCTTTCACCTAA
HS_assemblymutate_np1212 TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCAGGACAGGTGCCACCTTTCACCTAA
HS_haplotype2 TCTTCCCTTTAACCCATCAGACCAATATCAGAGGCAGGACAGGTGCCACCTTTCACCTAA
*********************************** ************************
HS_haplotype1 AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA
HS_assemblymutate_np1212 AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA
HS_haplotype2 AAAGCAAAAAAGAGGGGACAGCCCTCTCACAGGTCTCGCCGGGAGGTATGAGTACTATGA
************************************************************
HS_haplotype1 GCCTCATTCCCCCATCACGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAAATGGTGAAA
HS_assemblymutate_np1212 GCCTCATTCCCCCATCAGGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAAATGGTGAAA
HS_haplotype2 GCTTCATTCCCCCATCAGGAATCGCCTCTGCCCTGCTAGTAGTTTGGTCAGATGGTGAAA
** ************** ******************************** *********
HS_haplotype1 ACTACAGTCATTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT
HS_assemblymutate_np1212 ACTACAGTCATTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT
HS_haplotype2 ACTACCGTCATTAGGCAGCCAAGTTTTATTGCTGAGAAATCCTATATCTGTTCCTCAAAT
***** ******************************************************
HS_haplotype1 TGGCAACAAGAGAGAGGACATGCCTTGCTAATTTAATTTTTAAACCAGCTGCTGAGTTGC
HS_assemblymutate_np1212 TGGCAACAAGAGAGAGGACATGCCTTGCTAATTTAATTTTTAAACCAGCTGCTGAGTTGC
HS_haplotype2 TGGCAACAAGAGAGAGGACATGCCTTGCTAATTTAATTTTTAAACCAGCTGCTGAGTTGC
************************************************************
HS_haplotype1 CAGGTCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA
HS_assemblymutate_np1212 CAGGTCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA
HS_haplotype2 CAGGTCTCCTAATTTACATATGTGCGCCTCCAGCCTGTAATTTTATTAAAAAATAAGGTA
************************************************************
HS_haplotype1 AATCTGGGGGATTACCCGCCTGCCCCGCCCCCACCCAAAATATATATTTTTAATGGTGGC
HS_assemblymutate_np1212 AATCTGGGGGATTCCCCGCCTGCCCAGCCCCCACCCAAAATATATATTTTTAATGGTGGC
HS_haplotype2 AATCTGGGGGATTCCCCGCCTGCCCAGCCCCCACCCAAAATATATATTTTTAATGGTGGC
************* *********** **********************************
HS_haplotype1 AGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG
HS_assemblymutate_np1212 CGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG
HS_haplotype2 CGGCTGTCAGGGGGTTCTTCCTTCCATAAATAAACACTGCAACCACCACCCCCTGGCAGG
***********************************************************
HS_haplotype1 GAGGTGGGAAGAACTTGATTGTGGTTCCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAG
HS_assemblymutate_np1212 GAGGTGGGGAGAACTTGATTGTGGTTCCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAA
HS_haplotype2 GAGGTGGGGAGAACTTGATTGTGGTTCCTTTCCTTCTCCAGTGTGAAACATTTCGGAAAA
******** **************************************************
HS_haplotype1 ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTTAGACCATGCCTGGCCTGTCGCCA
HS_assemblymutate_np1212 ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTCAGACCAGGCCTGGCCTGTCGCCA
HS_haplotype2 ATAGTTCCTGCCCATGGGAGTTGGTTCAATCCCATTCAGACCAGGCCTGGCCTGTCGCCA
************************************ ****** ****************
HS_haplotype1 CATATCGCTGAAATCTCTCAGGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT
HS_assemblymutate_np1212 CATATCGCTGAAATCTCTCAGGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT
HS_haplotype2 CATATCGCTGAAATCTCTCAAGCCAGGTGCCCCAACAGTGCACTAAGTTTTGAGTCATTT
******************** ***************************************
HS_haplotype1 GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA
HS_assemblymutate_np1212 GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA
HS_haplotype2 GTGTACTACAGGCTTTTTAGGAGACTTTGAGGCTGAGATACTAAAGAGGGCCTGAGACAA
************************************************************
HS_haplotype1 AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG
HS_assemblymutate_np1212 AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG
HS_haplotype2 AGACTCAAACTCGGGAGGTTGACTCCAAATACAAAAAGGTTCCACGCATCAGCTACATGG
************************************************************
HS_haplotype1 GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCTGCTGGACTAGGAGAGGGATCTCTTCC
HS_assemblymutate_np1212 GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCTGCTGGACTAGGAGAGGGATCTCTTCC
HS_haplotype2 GTATAGCCAGACCTCCCTGCCTCCACTCTGTCCAGCTGGACTAGGAGAGGGATCTCTTCC
********************************* **************************
HS_haplotype1 CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG
HS_assemblymutate_np1212 CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG
HS_haplotype2 CTTGCCACACTGTAATTAACTTGGGATAAGTAGAGTGGCTCAGCACCTTATTTTCCTGGG
************************************************************
HS_haplotype1 CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTTCAGCAGCTTTA
HS_assemblymutate_np1212 CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTTCAGCAGCTTTA
HS_haplotype2 CCTCGGGTCTGGGACTACTCGCTGCCCCTCTAAGATGAATATAATTTTCCAGCAGCTTTA
************************************************ ***********
HS_haplotype1 GATTGTGTGTTCAGGAGTGATTCTCATTTATGAAGGAGACTCCTGCCAGGATTTACCCTC
HS_assemblymutate_np1212 GATTGTGTGTTCAGGAGTGATTCTCATTTATGAAGGAGACTCCTGCCAGGATTTACCCTC
HS_haplotype2 GATTGTGTGTTCAGGAGTGATTCTCATTTATGAAGGAGACTCCTGCCAGGATTTACCCTC
************************************************************
HS_haplotype1 TTGTTTTGTCCAGGAGTCGCCACCAAGGGAAAGGTGACAACCCCATGCCTCCAGAGAAAA
HS_assemblymutate_np1212 TTGTTTTGTCCAGGAGTCGCCACCAAGGGAAAGGTGACAACCCCATGCCTCCAGAGAAAA
HS_haplotype2 TTGTTTTGTCCAGGAGTCGCCACCAAGGGAAAGGTGACAACCCCATGCCTCCAGAGAAAA
************************************************************
HS_haplotype1 TTACCATGTTAATTTTCATGCAGGATGGAAACAGCAGTGTTTGAAATTTAGTTTGGGGAA
HS_assemblymutate_np1212 TTACCATGTTAATTTTCATGCAGGATGGAAACAGCAGTGTTTGAAATTTAGTTTGGGGAA
HS_haplotype2 TTACCATGTTAATTTTCATGCAGGATGGAAACAGCAGTGTTTGAAATTTAATTTGGGGAA
************************************************** *********
HS_haplotype1 GACTAATATGCTTGAAGTAGAAGGGCAAGAACTGGAGGCGGGTTACGCCTCGGCGCCTCT
HS_assemblymutate_np1212 GACTAATATGCTTGAAGTAGAAGGGCAAGAACTGGAGGCGGGTTACGCCTCGGCGCCTCT
HS_haplotype2 GACTAATATGCTTGAAGTAGAAGGGCAAGAAGTGGAGGCGGGTTACGCCTCGGCGCCTCT
******************************* ****************************
HS_haplotype1 GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT
HS_assemblymutate_np1212 GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT
HS_haplotype2 GCCCCCAGGCGGGCTATCTTACTGCTCATGTTCTCATGCTATATAACAAGAAGAATATTT
************************************************************
HS_haplotype1 TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA
HS_assemblymutate_np1212 TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA
HS_haplotype2 TTAAACCCGTGAAAACTAATTAAGATTTTACAGAGAGGCCAGGAAGATTCCGTGGTTGCA
************************************************************
HS_haplotype1 GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGACCACCACAGAGCTTTTACATG
HS_assemblymutate_np1212 GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGACCACCACAGAGCTTTTACATG
HS_haplotype2 GTGGGTGTTTGAACCTGTAGTGTTTAAGAGTAATAGAGAGCACCACAGAGCTTTTACATG
*************************************** ********************
HS_haplotype1 GAGTTAAAATAAGTTTTAGGTCAAGGACAGAGGTGTCCTCTGAACTGCCTTGATGGGCCA
HS_assemblymutate_np1212 GAGTTAAAATAAGTGTTTGGTCAAGGAGAGAGGTGTCTTCTGAACTGCCTTGATGGGCCA
HS_haplotype2 GAGTTAAAATAAGTGTTTGGTCAAGGAGAGAGGTGTCTTCTGAACTGCCTTGATGGGCCA
************** ** ********* ********* **********************
HS_haplotype1 GGACCTCAGGCATAAATATTAGCTTTGCCTTCACTGAATATTTCAAGTTCGGCTGGAAGT
HS_assemblymutate_np1212 GGACCTCAGGCATAAATATTAGCTTTGCCTTCCCTGAATATTTCAAGTTCGGCTGGAAGT
HS_haplotype2 GGACCTCAGGCATAAATATTAGCTTTGCCTTCCCTGAATATTTCAAGTTCGGCTGGAAGT
******************************** ***************************
HS_haplotype1 TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT
HS_assemblymutate_np1212 TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT
HS_haplotype2 TAGTAAAGGCAGTCTTCCAGCACTCCTGGAGAAATCTTCTGGTCATTTAGGTTTCTCTTT
************************************************************
HS_haplotype1 TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTACTAGCTCACT
HS_assemblymutate_np1212 TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTAGTAGCTCACT
HS_haplotype2 TAGTTCTGGCCCCGTGCAGTTTCGCCACCTTAGGGCTCATTCAATTTCTAGTAGCTCACT
************************************************** *********
HS_haplotype1 CCGTGCAGTTGGAAAAAGAAGAAAAGAAAGGCGGGCGGTGCAAGGAAGGTAATGAACAGC
HS_assemblymutate_np1212 CCGTGCGGTTGAAAAAAGAAGAAAAGACAGGCGGGCGGTGCAAGGAAGGTAATGAACGGC
HS_haplotype2 CCGTGCGGTTGAAAAAAGAAGAAAAGACAGGCGGGCGGTGCAAGGAAGGTAATGAACGGC
****** **** *************** ***************************** **
HS_haplotype1 CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATCCAGTGCTGGGCCG
HS_assemblymutate_np1212 CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATCCAGTGCAGGGCTG
HS_haplotype2 CTGAGAAGCATAAGTGATCCGCGGCCATCTCTTTGAAACAACACATCCAGTGCAGGGCTG
***************************************************** **** *
HS_haplotype1 AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG
HS_assemblymutate_np1212 AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG
HS_haplotype2 AGGTTAAGCAGTGGACAAAGATAAATATGCATAGTAGAGGTTGTCTCCATCTAGAGATGG
************************************************************
HS_haplotype1 CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACAC
HS_assemblymutate_np1212 CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACGC
HS_haplotype2 CATTTTCCTATAATCCAGTCTCACCTTTTTTGTGGAGCCAAAACAAGGTGCTTTAAACGC
********************************************************** *
HS_haplotype1 ATGAATTCCTCTCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG
HS_assemblymutate_np1212 ATGAATTCCTCTCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG
HS_haplotype2 ATGAATTCCTCTCTTCATGGTGGCCGCTTCTGTAGCTCAAAAGAAACATTCCACATCTTG
************************************************************
HS_haplotype1 CTTTTAACAAGAGGCTGTGGTGCGAATTCAATGACTTAGCCTGCAGTCTGTCCTGTCTGA
HS_assemblymutate_np1212 CTTTTAACAAGAGGCTGTGGTGCGAATTCAATGACTTAGCCTGCAGTCTGTCCTGTCTGA
HS_haplotype2 CTTTTAACAAGAGGCTGTGGTGCTACTTCAATGACTTAGCCTGCAGTCTGTCCTGACTGA
*********************** * ***************************** ****
HS_haplotype1 CTGTAGGTGAATGGGGATGCTTTTTTTTTGTGATGTACTCACTGGAAAACTAGCCGAGAG
HS_assemblymutate_np1212 CTGTAGGTGAATGGGGATGCTTTTTTTTTGTGATGTACTCACTGGAAAACTAGCCGAGAG
HS_haplotype2 CTGTAGGTGAATGGGGATGCTTGTTTTTTATGATGTACTCACTGGAAAACTAGCCGAGAG
********************** ****** ******************************
HS_haplotype1 GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC
HS_assemblymutate_np1212 GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC
HS_haplotype2 GTGTGGCGCATCTCTTCGGCTCCAGAAATGCAGCCCCCGCCTGTTCAAGCTGTCAACCTC
************************************************************
HS_haplotype1 CAGTCACCACAGCCTCCTTCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC
HS_assemblymutate_np1212 CAGTCACCACAGCCTCCTTCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC
HS_haplotype2 CAGTCACCACAGCCTCCTGCCCACTTCCTTGGGAAGCAAGAACAGAGTTCCAGCCGAGAC
****************** *****************************************
HS_haplotype1 ACATCATTCTTTTTTGAGCAGCCTCCCCTTGTTCCTGGTGTGGGTGCAAGTTCACATGGC
HS_assemblymutate_np1212 ACATCATTCTTTTTTGAGCAGCCTCCCCTTGTTCCTGGTGTGGGTGCAAGTTCACATGGC
HS_haplotype2 ACATCATTCTTTTTCGAGCAGCCTCCCCTTGTTCCTTGTGTGGGTTCAAGTTCACATGGC
************** ********************* ******** **************
HS_haplotype1 TCATGCATTCAATACAATGGAAGCCCTATTGATATGATCCTCATGTATCTGCTTTTGATA
HS_assemblymutate_np1212 TCATGCATTCAATACAATGGAAGCCCTATTGATATGATCCTCATGTATCTGCTTTTGATA
HS_haplotype2 TCATGCATTCAAAACAGCGGAAGCCCTAGTGATATGATCCTCATGTATCTGCTTTTGATA
************ *** ********** *******************************
HS_haplotype1 TTTTCATTAATCCACCCGCCCAGCTGGGCTCAGTCTGAACATTGTAAAGTTCCCTGAACA
HS_assemblymutate_np1212 TTTTCATTAATCCACCCGCCCAGCTGGGCTCAGTCTGAAAATTGTAAAGTTCCCTGAACA
HS_haplotype2 TTTTAATTAATCCACCCGCCCAGCTGGGCTCAGTCTGAAAATTGTAAAGTTCCCTGAACA
**** ********************************** ********************
HS_haplotype1 TCCCCTCATGCTTGCAAATGAATTTTTCTAGGATTGCTCCACCCAGCCTGCGTAGTGAGG
HS_assemblymutate_np1212 TCCCCTCATGCTTGCAAATGAATTTTTCTAGGATTGCTCCACCCAGCCTGCGTAGTGAGG
HS_haplotype2 TCCCCTCATGCTTGCAAATGAATTTTTCTAGGATTGCTCCACCCAGCCTGCGTAGTGAGG
************************************************************
HS_haplotype1 AAAGAAAACAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC
HS_assemblymutate_np1212 AAAGAAAACAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC
HS_haplotype2 AAAGAAAACAGAGGTGAGGCATGCTCAGGGGAACCCTGCCTGTGGCCAACCTCAGCCTCC
************************************************************
HS_haplotype1 TTTGAAATGAAATATATCTGATTCTGATGATGAAGCAGGCCTCACACATGTTTACTTCAT
HS_assemblymutate_np1212 TTTGAAATGAAATATATCTGATTCTGATGATGAAGCAGGCCTCACACATGTTTACTTCAT
HS_haplotype2 TTTGAAATGAAATATATCTGATTCTGATGGTGAAGCAGGCCTCACACATGTTTACTTCAA
***************************** *****************************
HS_haplotype1 AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATCGAGTATATTCTCTTTTCTTT
HS_assemblymutate_np1212 AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATCGAGTATATTCTCTTTTCTTT
HS_haplotype2 AGAGATAATTCTAGATAATGTATTCTAATGTGTCTTCATTGAGTATATTCTCTTTTCTTT
*************************************** ********************
HS_haplotype1 ACCTACAGGCTGGGGTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAG
HS_assemblymutate_np1212 ACCTACAGGCTGGGGTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAG
HS_haplotype2 ACCTACAGGCGGGGTTTTTAGGACCATCCCTAGGCCCTGTAAAAAAAACTATAATGAGAA
********** *** ********************************************
HS_haplotype1 CATGTCTCCTCCCTACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA
HS_assemblymutate_np1212 CATGTCTCCTCCCTACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA
HS_haplotype2 CATGTCTCCTCCCCACCAGCCGGGGCAACATCTCCATCCCAGGTGCACTTCCTCCCCTAA
************* **********************************************
HS_haplotype1 AGTACCTGAATCTCTAAGCAAGTGAGTACTTTGATCTGTCTGTGCTGACTACAGTAAGTA
HS_assemblymutate_np1212 TGTACCTGAATCTCTAAGCAAGTGAGTACTTTGATCTGTCTGTCCTGACTACAGTAAGTA
HS_haplotype2 TGTACCTGAATCTCTAAGCAAGTGAGTGCTTTGATCTGTCTGTCCTGACTACAGTAAGTA
************************** *************** ****************
HS_haplotype1 CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC
HS_assemblymutate_np1212 CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC
HS_haplotype2 CAAGCTCTACAGGTAGGCTGGTGATGGCTCTGTTTCCTTTGGTGAGCTTCATTCCCTTTC
************************************************************
HS_haplotype1 TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAAAAGACAGGCTAAAATACAGCTTTGGCC
HS_assemblymutate_np1212 TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAGAAGACAGGCTAAAATACAGCTTTGGCC
HS_haplotype2 TCTGCAGGCTGGCCAGCCTCGTCCCGAGGGGAGAAGACAGGCTAAAATACAGCTTTGGCC
******************************** ***************************
HS_haplotype1 AGCTGCACTTTGAGGGAGACCCAAACAAAGTTTTAATGTGCAGGAAGGATAACAAGTGCT
HS_assemblymutate_np1212 AGCTGCACTTTGAGGGAGACCCAAACAAAGTTTTAATGTGCAGGAAGGATAACAAGTGCT
HS_haplotype2 AGCTGCACTTTGAGGGAGACCCAAACAAAGTTTTAATGTGCAGGAAGGATAACAAGTGCT
************************************************************
HS_haplotype1 GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATTAG
HS_assemblymutate_np1212 GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATCAG
HS_haplotype2 GCCTGAAAGAATTTAGCTTTTATTCAAGGAGGACCGGTGGCACCTGCCCTTGTAAATCAG
********************************************************* **
HS_haplotype1 CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA
HS_assemblymutate_np1212 CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA
HS_haplotype2 CTGGAGTTGAGAGGAGGAGCATCATGTTGCTTCCATAGCTGTTTCATGTAATGCTGAGCA
************************************************************
HS_haplotype1 CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGAGAGATTTTCATTTCTTGG
HS_assemblymutate_np1212 CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGGGAGATTTTCCTTTCTTGG
HS_haplotype2 CTGTGGTACTAAAGCCCTCTCTGGAGCTCTGCAACAATCCGGGAGATTTTCCTTTCTTGG
***************************************** ********* ********
HS_haplotype1 CCACCGCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC
HS_assemblymutate_np1212 CCACCGCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC
HS_haplotype2 CCACCGCGATTGAACCCCCCAGTATTACCACATAACAACAAAGTGGAAGCTTTATTTTCC
************************************************************
HS_haplotype1 TCTGGACGTCACTTACAGATTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG
HS_assemblymutate_np1212 TCTGGACGTCACTTACAGATTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG
HS_haplotype2 TCTTGACGTCACTTACAGAGTGGTTGCCAGAAGAAAGGTCTGCCTCGGGGCTAATACATG
*** *************** ****************************************
HS_haplotype1 CGCCTGTTCATTATGTTGGTGCAAATACACATGCCAAGAATGGGGCCACAGTGCTCACCC
HS_assemblymutate_np1212 CGCCTGTTCATTATGTTGGTGCAAATACACATGCCAAGAATGGGGCCACAGTGCTCACCC
HS_haplotype2 CGCCTGTTCATTAAGTTGGTGCAAATATACATGCCAAGAATGGGGCCACAGCGCTCACCC
************* ************* *********************** ********
HS_haplotype1 CACAGGAGTGAGAGATGAACCACAATGAGACCATCACAATTAGGCAGAAAAGATGACTTA
HS_assemblymutate_np1212 CACAGGAGTGAGAGATGAACCACAATGAGACCATCACAATTAGGCAGAAAAGATGACTTA
HS_haplotype2 CACAGGAGTGAGAGATGAACCACAAGGACACCATCACAATTAGGCAGAAAAGATGACTTA
************************* ** *******************************
HS_haplotype1 CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG
HS_assemblymutate_np1212 CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG
HS_haplotype2 CCTCCATCTCAAATGGGGAGGTGCGCGGTGCTTGTGGTGTCATTTGATCAATTTATCAAG
************************************************************
HS_haplotype1 ACACCACCATTTAAAGAACATTTTAAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG
HS_assemblymutate_np1212 ACACCACCATTTAAAGAACATTTTGAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG
HS_haplotype2 ACACCACCATTTAAAGAACATTTTGAGTGTACAGGGATGGCACTGTAAACACCGGAGTGG
************************ ***********************************
HS_haplotype1 GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTGAAGTATACATTTTCTC
HS_assemblymutate_np1212 GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTGAAGTATACATTTTCTC
HS_haplotype2 GTCTCTGACCTTGGGACAAAAAAGGCTCAAGCAAGTTCTTCCTTAAGTATACATTTTCTC
******************************************* ****************
HS_haplotype1 GTTCTAGAGAGGGGAAAACCGCATGAGAGAAGGCCTGACTCTTTTAATTTTATGGCACTT
HS_assemblymutate_np1212 GTTCTAGAGAGGGGAAAACCGCATGAGAGAAGGCCTGACTCTTTTAATTTTATGGCACTT
HS_haplotype2 GTTCTAGAGAGGGGAAAACCGCATGAGAGAAGGCCTGACTCTTTTAATTTTATGGCACTT
************************************************************
HS_haplotype1 TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCAGCTCTGG
HS_assemblymutate_np1212 TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCAGCTCTGG
HS_haplotype2 TTGTTTTAAGGTACATATGGAGAAGAGTTCACGTACCAACTCTTTTAGTCCCACCTCTTG
***************************************************** **** *
HS_haplotype1 AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT
HS_assemblymutate_np1212 AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT
HS_haplotype2 AACAAAACAATATAATGCAGTTTGCTCACCGTGTTCTGGTTGTTGCCTTTCCAGGATGCT
************************************************************
HS_haplotype1 TCACTTCAGTGTCATTTATTACCATACATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT
HS_assemblymutate_np1212 TCACTTCAGTGTCATTTATTACCATAAATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT
HS_haplotype2 TCACTTCAGTGTCATTTATTACCATAAATTTCCAGTGGGGAGTAGGGGAATTGCTGGGGT
************************** *********************************
HS_haplotype1 CACACACGGTGGGGTGTACTTTCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACAT
HS_assemblymutate_np1212 CACACACGGTGGGGTGTACTATCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACAT
HS_haplotype2 CACACACGGTGGGGTGTACTATCAAAAAAACCCTTGACTTCTTCTCTTGGACATGAACAT
******************** ***************************************
HS_haplotype1 TGCCACCGACTCTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC
HS_assemblymutate_np1212 TGCCACCGACCCTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC
HS_haplotype2 TGCCACCGACCCTGTAGTCTAATTTGCTGACACCTCATTCTTCCTGCACCAGGGTGGGGC
********** *************************************************
HS_haplotype1 GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC
HS_assemblymutate_np1212 GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC
HS_haplotype2 GCAGTTTAACTATCCCCAACATTAGGGGGCTCACACCAGAGACAGTCTCACGAAGACCTC
************************************************************
HS_haplotype1 GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC
HS_assemblymutate_np1212 GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC
HS_haplotype2 GGGTGAGTTAAGACTGGGTTTTAGAAAAGACCATGTCTGGTCATAAATAGAATCTCCCTC
************************************************************
HS_haplotype1 AAAATGTGGTGGAGAAATAGTCAGCATAAATTGGACAATCCTGTGCCTAGACAAAGTGCA
HS_assemblymutate_np1212 AAAATGTGGTGGAGAAATAGTCAGCATAAATTGGACAATCCTGTGCCTAGACAAAGTGCA
HS_haplotype2 AAAACGTGGTGGAGAAATAGTCCGCATAAATTGGACAATCCTGTGCCTAGACAGAGTGCA
**** ***************** ****************************** ******
HS_haplotype1 AGAGGTTTGATATTAGAAGAGCTGAATGAATATGAAAGCAGCGGCGCAGTGACTTCTTCC
HS_assemblymutate_np1212 AGAGGTTTGATATTAGAAGAGCTGAATGAATATGAAAGCAGCGGCGCAGTGACTTCTTCC
HS_haplotype2 AGAGGTTTGATATTAGATGAGCTGAATGAATATGAAAGCAGCGGCGCAGTGACTTCTTCC
***************** ******************************************
HS_haplotype1 TTGAACTCTGTGGCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC
HS_assemblymutate_np1212 TTGAACTCTGTGGCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC
HS_haplotype2 TTGCACTCTGTGGCAGAGTCTTCTAATGTAATTCCATCTTTAGGCGGGGAGTTGGCCCCC
*** ********************************************************
HS_haplotype1 AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA
HS_assemblymutate_np1212 AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA
HS_haplotype2 AAGTAGAGGGGGCAACTGGAGGGGGTTCACTACATGATTAAATCATCTGGAGTGGCGGGA
************************************************************
HS_haplotype1 GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA
HS_assemblymutate_np1212 GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA
HS_haplotype2 GACCTACTGTGATAACAAAAACACTCTGAAGTTTTCTATCACATATCACAAATGGAAAAA
************************************************************
HS_haplotype1 TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT
HS_assemblymutate_np1212 TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT
HS_haplotype2 TAGAGTATCAATAAATCTGATTATGTAACTAGGTTGTGCTGGTATCAAGTCCTGCCACAT
************************************************************
HS_haplotype1 GAGATGACCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT
HS_assemblymutate_np1212 GAGATGTCCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT
HS_haplotype2 GAGATGTCCCTAAGAAGTGGGAGGCTGAGATAAGAAAAGTCGACCTCTATTAGAAAGTTT
****** *****************************************************
HS_haplotype1 TAATATTTGTATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG
HS_assemblymutate_np1212 TAATATTTGGATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG
HS_haplotype2 TAATATTTGGATTTTTGGGGTGGTGGGCCACTGGTCCAAGTGTCTGCATGCCCAGATCTG
********* **************************************************
HS_haplotype1 CCACCCAGATAAATATAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG
HS_assemblymutate_np1212 CCACCCAGATAAATATAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG
HS_haplotype2 CCACCCAGATAAATAGAGACACCATTTAGAAGGAAGTAAGTTAAATTGCAAACATTATTG
*************** ********************************************
HS_haplotype1 AGATTATGGTTCTGAAAATTGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT
HS_assemblymutate_np1212 AGATTATGGTTCTGAAAATTGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT
HS_haplotype2 AGATTATGGTTCTGAAAATGGAACTGACCTGGGATTCAAGGCCCTTCTGTCCAGCCAGGT
******************* ****************************************
HS_haplotype1 GAGGAATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT
HS_assemblymutate_np1212 GAGGAATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT
HS_haplotype2 GAGGCATTTTACTGAGGCTGGTTTCGTTAGTACTTTAAGAGAGATGGGCTGGAGGTTCAT
**** *******************************************************
HS_haplotype1 GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGGGGGTTATACAGAGGAAG
HS_assemblymutate_np1212 GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGTGGGTTATACAGAGGAAG
HS_haplotype2 GTGAAGCTCTTTCAAAGTAATCCCGTCTTCTCTGTACCTGTGTGGGTTATACAGAGGAAG
****************************************** *****************
HS_haplotype1 ATCCTTTTGTGAGAGCTCATCATCTTCCGAGCCTTTCTTAGAAATTGTAATCCAGGCAGG
HS_assemblymutate_np1212 ATCCTTTTGTGAGAGCTCATCATCTTCCGAGCCTTTCTTAGAAATTGTAATCCAGGCAGG
HS_haplotype2 ATCCTTTTGTGAGAGCTCATCATCTTCCGAGCCTTTCTTAGAAATTGTAATCCAGGCAGG
************************************************************
HS_haplotype1 ATTACTGATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCTGAGATGGA
HS_assemblymutate_np1212 ATTACTTATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCTGAGATGGA
HS_haplotype2 ATTACTTATATAGGACCCATTATGAGTTGTGCAGATGAAACAACTCTGTGCAGAGATGGA
****** ******************************************** ********
HS_haplotype1 AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCTCACATCCGCCG
HS_assemblymutate_np1212 AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCCCACATCCTCCG
HS_haplotype2 AATAACAAACTTATAGTTAGTGGCCGGCGGGGTCAACCTGCTTGTTCCCCACATCCTCCG
************************************************ ******* ***
HS_haplotype1 CCAGGAAAGCATCTCCTTGCTCTACCCTTGTTCCGAGACTGACCCCGTCGCCTCTTCTTG
HS_assemblymutate_np1212 CCAGGAAAGCATGTCCTTGCTCTACCCTTGTTCCGAGACTGACCCCGTCGCCTCTTCTTG
HS_haplotype2 CCAGGAAAGCATGTCCTTGCTCTACCCTTGTTCCGAGACTGACCCCGTCGCCTCTTCTTG
************ ***********************************************
HS_haplotype1 CAGGAAAAGTCCTGTACCCAATTTAGATCGCAGTGGCAGGATGTTATCTCTAGGAACGTA
HS_assemblymutate_np1212 AAGGAAAAGTCCTGTACCCAATTTCGATCGCAGTGGCAGGATGTTATCTCTAGGAACGTA
HS_haplotype2 AAGGAAAAGTCCTGTACCCAATTTCGATCGCAGTGGCTGGATGTAATCTCTAGGAACGTA
*********************** ************ ****** ***************
HS_haplotype1 GGAAGAAAGGAATTCCCGCAGGGGAGGTAATTATTACTAAGGAATTGCAGCGACCCACGA
HS_assemblymutate_np1212 GGAAGAAAGGAATTCCCGCAGGGGAGGTAATTATTACTAAGGAATTGCAGCGACCCACGA
HS_haplotype2 GGGAGAAAGGAATTCCCGCAGGGGAGGTAATTATTACTAAGGAATTGCAGCGACCCACGA
** *********************************************************
HS_haplotype1 TTCCACTCTTTCTATTGTATGTCTGAATCGATCTTCTGCAACCCAGCCACCTCACCCAAC
HS_assemblymutate_np1212 TTCCACTCTTTCTATTGTATGTCTGAATCGATCTTCTGCAACCCAGCCACCTCACCCAAC
HS_haplotype2 TTCCACTCTTTCTATTGTATGTCTGAATCGATCTTCTGCAACCCAGCCACCTCACCCAAC
************************************************************
HS_haplotype1 CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATACTCAGGAA
HS_assemblymutate_np1212 CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATACTCAGGAA
HS_haplotype2 CTCAGCTGGAGAATGATACGGTGTGAGTTGAGAAATAGATTCAACACAGATTCTCAGGAA
*************************************************** ********
HS_haplotype1 TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA
HS_assemblymutate_np1212 TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA
HS_haplotype2 TTTTCCTTGTAGCGCAGTGGTGTGCCTCTCCTGTGGAAGGCGTCGATTTTGATCCAGAAA
************************************************************
HS_haplotype1 ATTAGTCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC
HS_assemblymutate_np1212 ATTAGTCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC
HS_haplotype2 ATTAGGCCACCTGTAGAGAACAGAGCCAGGTGGTAGATAGTCCTGAGTACCCACTGTTCC
***** ******************************************************
HS_haplotype1 CAAGATAATAAAAATAAAGCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT
HS_assemblymutate_np1212 CAAGATAATAAAAATAAATCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT
HS_haplotype2 CAAGATAATAAAAATAAATCACTCCTAGCCTTTTATTTATTCTGTCCCAAACAGTTAGAT
****************** *****************************************
HS_haplotype1 TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGAAA
HS_assemblymutate_np1212 TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGACA
HS_haplotype2 TGTCCCATTCCTCAAGAGCCACTCTGGTGAGTCAGGTCGGTCCATCCAGCTGCTGCGACA
********************************************************** *
HS_haplotype1 CTGCCACCGGAGTGCTGCAACTAAGGCCCAGCTAATTACTCGGGGTCCCAGCTGAATGAG
HS_assemblymutate_np1212 CTGCCACCGGAGTGCTGAAACTACGGCCCAGCTAATTACTCGGGGACCCAGCTGAATGAG
HS_haplotype2 CTGCCACCGGAGTGCTGAAACTACGGCCCAGCTAATTACTCGGGGACCCAGCTGAATGAG
***************** ***** ********************* **************
HS_haplotype1 GCCCCCAACGTAGCCAGGCGTGATCCTAGTTTCCAGCCTCTGAGCTGAGGCTGCAGAGCT
HS_assemblymutate_np1212 GCCCCCAACGTAGCCAGGCGTGATCCTAGTTTCCAGCGTCTGAGCTGAGGCTGCAGAGCT
HS_haplotype2 GCCCCCAACGTAGCCAGGCGTGATCCTAGTTTCCAGCGTCTGAGCTGAGGCTGCAGAGCT
************************************* **********************
HS_haplotype1 GAGTTGAATGGCTTCATTAAATGACGGAAGTGAGAGGAGCATGTCCGGACCTCACACTCA
HS_assemblymutate_np1212 GAGTTGAATGGCTTCATTAAATGACTGAAGTGAGAGGAGCATGTCCGGACCTCACACTCA
HS_haplotype2 GAGTTGAATGGCTTCATTAAATGACTGAAGTGAGAGGAGCATGTCCGGACCTCACACTCA
************************* **********************************
HS_haplotype1 AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCTAAATGATAACATGGGGGGGCCACT
HS_assemblymutate_np1212 AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCGAAATGATAAGATGGGGGGGCCACT
HS_haplotype2 AAAAAAAGAAGGAACAGAGATGTATTTTTGTTTTCGAAATGATAAGATGGGGGGGCCACT
*********************************** ********* **************
HS_haplotype1 GCAGCAGTAATGTAGCATCTCAGAAGGGATTTCTTTTCATCCAAAATAATATGACACCAT
HS_assemblymutate_np1212 GCAGCAGTAATGTACCATCGCAGAAGGGATTTCTTTTCATCCAATATAATATGACACCAT
HS_haplotype2 GCAGCAGTAATGTACCATCGCAGAAGGGATTTCTTTTCATCCAATATAATATGACACCAT
************** **** ************************ ***************
HS_haplotype1 GAGTCAGTGGGATCCAAAGGGCCACGAGGCAGGGTGTCCCAACCACCACTGAATCAATTC
HS_assemblymutate_np1212 GAGTCAGTGGGATCCAAAGGGCCATGAGGCAGTGTGTCCCAACCACCACTGAATCAATTC
HS_haplotype2 GAGTCAGTGGGATCCAAAGGGCCATGAGGCAGTGTGTCCCAACCACCACTGAATCAATTC
************************ ******* ***************************
HS_haplotype1 AGCGAGTTCTTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCTTTT
HS_assemblymutate_np1212 AGCGAGTTCCTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCGTTT
HS_haplotype2 AGCGAGTTCCTGCCAAACTCTTCCCAGTAAAGAATTTGCCATGCAGAGTCAGTTTCGTTT
********* ********************************************** ***
HS_haplotype1 TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGGACACCCAGGGTTC
HS_assemblymutate_np1212 TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGCACACCCAGGGTTC
HS_haplotype2 TCTAAGTACAAGCTACAATTCTTCTTATAGAGGCCATCAGATGGCGCACACCCAGGGTTC
********************************************** *************
HS_haplotype1 CTGAGTGAATCGGGCCGCAGGGGGGAGTGGAGGCTGACCTCATCACATGAGGGGACCATG
HS_assemblymutate_np1212 CTGAGTGAATCGGGCCGCAGGGGGGAGTGCAGGCTGACCTCATCACATGAGGGGACCTTG
HS_haplotype2 CTGAGTGAATCGGGCCGCAGGGGGGAGTGCAGGCTGACCTCATCACATGAGGGGACCTTG
***************************** *************************** **
HS_haplotype1 AGATATAATCTTAATGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCC
HS_assemblymutate_np1212 AGATATAATCTTAATGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCC
HS_haplotype2 AGATATAATCTTAATGAGAACCCAGGCATGGAACCTTGCTTTTTCCCTCACCACACTGCA
***********************************************************
HS_haplotype1 AATCCTACTTTCACCTCCCCTAGGCAAAGATAGGAATGTGTGAGCAGTGGCTCACGCCAA
HS_assemblymutate_np1212 AATCCTACTTTCACCTCCCCTAGGCAAAGATAGGAATGTGTGAGCAGTGGCTCACGCCAA
HS_haplotype2 AATCCTACTTTCTCCTCCCCTAGGCAAAGATAGGTATGTGTGAGCAGTGGCTCACGCCAA
************ ********************* *************************
HS_haplotype1 CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT
HS_assemblymutate_np1212 CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT
HS_haplotype2 CTGGCCTTATCTGTATCAGCCGGCACAAAAAAAAGGCTGGCTTTCAATTCTTTGTTGGTT
************************************************************
HS_haplotype1 CTGAGAAAGATGGTTAAAAAGAAATCACCCCTGTTCCTGGGGGCCAGACTTCAGGGTTCA
HS_assemblymutate_np1212 CTGAGAAAGATGGTTAAAAAGAAATCAGCCCTGTTCCTGGGGGCCAGACTTCATGGTTCA
HS_haplotype2 CTGAGAAAGATGGTTAAAAAGAAATCAGCCCTGTTCCTGGGGGCCAGACTTCATGGTTCA
*************************** ************************* ******
HS_haplotype1 ATCCCATGCAAGACGGGCGTAGTATATGAGTAAAACAGAATTTACAGTTGGCTCAAGATC
HS_assemblymutate_np1212 ATCCCATGCAAGACGGGCGTAGAATATGAGTAAAACATAATTTACAGGTGGCTCAAGTTC
HS_haplotype2 ATCCCATGCAAGACGGGCGTAGAATATGAGTAAAACATAATTTACAGGTGGCTCAAGTTC
********************** ************** ********* ********* **
HS_haplotype1 CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC
HS_assemblymutate_np1212 CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC
HS_haplotype2 CTGGAGTGTTCTCTGAATACTCCTCTCAGCCAGTTTTAGTACACTGGGTGCCTCCTGAAC
************************************************************
HS_haplotype1 TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC
HS_assemblymutate_np1212 TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC
HS_haplotype2 TGGCTAGAAAGGCAACAAAAAAGGTGCAGTCCTTAGTGCTGGGCTGCCCAGGAGCTCTCC
************************************************************
HS_haplotype1 AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT
HS_assemblymutate_np1212 AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT
HS_haplotype2 AAAATGTTCTCCCAGCTCAACAAAAGAATTAGGGGAGACTGTTAATGAAGAGGTGTTGGT
************************************************************
HS_haplotype1 CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTGAATTTTTGTTTATAGA
HS_assemblymutate_np1212 CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTTAATTTTTGTTTATAGA
HS_haplotype2 CTTCACAAAGGGTAATTCATTTGTTGAGCTTAACTTATTTGTTTAATTTTTGTTTATAGA
******************************************* ****************
HS_haplotype1 TTCTCTACTGTGTCTCTCCCTAAGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG
HS_assemblymutate_np1212 TTCTCTACTGTGTCTCTCCCAAAGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG
HS_haplotype2 TTCTCTACTGTGTCTCTCCCAAAGTCCACCTGAGTAGAAAAGAAAGAGGAACCCAGTTTG
******************** ***************************************
HS_haplotype1 TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG
HS_assemblymutate_np1212 TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG
HS_haplotype2 TTTTTAGTATTTTTGGAGGAGGAAGCAGAGGCATCATCACGGTTTTGGTAACCACAACAG
************************************************************
HS_haplotype1 TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG
HS_assemblymutate_np1212 TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG
HS_haplotype2 TTTACACATCATGCTTCCCTTCCTCCTGACCTCCACCATGCCAGAGGAAGACTTACTCAG
************************************************************
HS_haplotype1 GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCATTGTTTAAAGTGTTGCCAGGTGGGGA
HS_assemblymutate_np1212 GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCACTGTTTGAAGTGTAGCCAGGTGGGGA
HS_haplotype2 GAAGAAAAGACATTCTTCAGTTTTGTTTGTTCCACTGTTTGAAGTGTAGCCAGGTGGGGA
********************************** ***** ****** ************
HS_haplotype1 GGTAAAAAGAAAGATCACTGTAGCGCGGTAGTGATTCTAAAACAGTAGGAGAAAGCTGAG
HS_assemblymutate_np1212 GGTAAAAAGAAAGATCGCTGTAGCGCGGTAGTTATTCTAAAACAGTAGGAGAAAGCTGAG
HS_haplotype2 GGTAAAAAGAAAGATCGCTGTAGCGCGGTAGTTATTCTAAAACAGTAGGAGAAAGCTGAG
**************** *************** ***************************
HS_haplotype1 ACAAAATACAGTGATCAAGAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT
HS_assemblymutate_np1212 ACAAAATACAGTGATCAACAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT
HS_haplotype2 ACAAAATACAGTGATCAACAACCCTTCGGCCCCAAGGTCACCCAAGGTAATAACCCTCGT
****************** *****************************************
HS_haplotype1 AATCCTGTTGATGGCTGTAGTCCAGACTCCACATAGATGAAGGAAGAAGAGACCTGCCTT
HS_assemblymutate_np1212 AATCCTGTTGATGGCTGTAGTCCAGACTCCACATAGATGAAGGAAGAAGAGACCTGCCTT
HS_haplotype2 AATCCTGTTGATGGCTGTAGTCCAGACTCCACATAGATGAAGGAAGAAGAGACCTGCCTT
************************************************************
HS_haplotype1 TTGTAGCCGGGCTGCATTATCTTCATTTACATCTATGGGAACAGATAGACCTTCGAGAGC
HS_assemblymutate_np1212 TTGTAGCCGGGCTGCATTATCTTCATTTACATCTATGGGAACAGATAGACCTTCGAGAGC
HS_haplotype2 TTGTAGCCGGGCTGCATTATCTTCATTTACATCTATGGGAAAAGAGAGACCTTCGAGAGC
***************************************** *** **************
HS_haplotype1 CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCTCTGAATTTTTCACCTAAAGCGGCC
HS_assemblymutate_np1212 CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCTCTGAATTTTTCACCTAAAGCGGCC
HS_haplotype2 CTCAGCCCTTTGGGCTCCCTGCCTCCTCTCTTTGCCCTGAATTTTTCACCAAAAGCGGCC
*********************************** ************** *********
HS_haplotype1 GCTGCCCAGGCGTTGCTGTGGACCCAGTTAAGACCATCTGTGCGCAGACTGAGTAAATAA
HS_assemblymutate_np1212 GCTGCCCAGGCGTTGCTGTGGGCCCAGTTAAGACCATCTGTGCGCAGACTTAGTAAATAA
HS_haplotype2 GCTGCCCAGGCGTTGCTGTGGGCCCAGTTAAGACCATCTGTGCGCAGACTTAGTAAATAA
********************* **************************** *********
HS_haplotype1 AGGGCTGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTCAT
HS_assemblymutate_np1212 AGGGCTGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTGAT
HS_haplotype2 AGGGCTGGCTGAAAAGACACATGTGCTGGCCCTCACTGCAATTTTTGGGCTCTGCCTGAT
********************************************************* **
HS_haplotype1 TACCAGACGCCTGTAAAGAGTGAGAGATGAGAAGGTAAGCTAATCTGAACAAAAATTAAG
HS_assemblymutate_np1212 TACCAGACGCTTGTAAAGAGTGTGAGATGAGAAGGTAAGCTACTCTGAACAAAAATTAAG
HS_haplotype2 TACCAGACGCTTGTAAAGAGTGTGAGATGAGAAGGTAAGCTACTCTGAACAAAAATTAAG
********** *********** ******************* *****************
HS_haplotype1 GCACCAAGTCTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTC
HS_assemblymutate_np1212 GCACCAAGTTTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTT
HS_haplotype2 GCACCAAGTTTTAGTTGTCTTTGCTTTCCCTCACTGCTACTAAGTTGGCAGTAGAATTTT
********* *************************************************
HS_haplotype1 AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT
HS_assemblymutate_np1212 AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT
HS_haplotype2 AAGAATCCAAACTGGATCATGGGATTGTCTGAGTCAGCATAGGAAGAGAGTGGTGAGCCT
************************************************************
HS_haplotype1 CCTGATTACAGACTTCAAAAATCCTAAAATGCCCATCAAAGATGATTGCTTCCCATTCTG
HS_assemblymutate_np1212 CCTGATTACAGACTTCAAAAATCCTAAAATGCCCATCAAAGATGATTGCTTCCCTTTCTG
HS_haplotype2 CCTGATTACAGACTTCAAAAATCCTAAAATGCCCATCAAAGATGATTGCTTCCCTTTCTG
****************************************************** *****
HS_haplotype1 TCCTAGGACTCAAAGGATGGGAGGCAGGGAAAAGAATGCCTGAGACTCAGTACATTAGTA
HS_assemblymutate_np1212 TCCTAGGACTCAAAGGATGGGAGGCAGGGAAAAGAATGCCTGAGACTCAGTACATTAGTA
HS_haplotype2 TCCTAGGACTCAAAGGATGGGAGGCAGGGAAAAGAATGCCTGAGACTCAGTACATTAGTA
************************************************************
HS_haplotype1 CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC
HS_assemblymutate_np1212 CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC
HS_haplotype2 CTATTAGCTGCACATTGAGGATGGAAAATTCTAGCCATGCCAGACATAAACCAATCATGC
************************************************************
HS_haplotype1 TAATATGCCGCTCCCAGGCCGTCGGAAAGACTATAGGTGTTATCCCTGTATGGGAGAGTT
HS_assemblymutate_np1212 TAATATGCCGCTCCCAGGCCGTCGGAAAGACTATAGGTGTTATCTCTGTATGGTAGAGTT
HS_haplotype2 TAATATGCTGCTCCCAGGCCGTCGGAAAGACTATAGGTGTTATCTCTGTATGGTAGAGTT
******** *********************************** ******** ******
HS_haplotype1 CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGTAACTTAGCAGTAGCCAGGA
HS_assemblymutate_np1212 CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGGAACTTAGCAGTAGCCAGGA
HS_haplotype2 CCTCAACGTAGGCAAGCTGTGACCATTTAGTATTTTCCTGGAACTTAGCAGTAGCCAGGA
**************************************** *******************
HS_haplotype1 TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTGTTCTGTTAGTATAATGG
HS_assemblymutate_np1212 TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTGTTCTGTTAGTATAATGG
HS_haplotype2 TTCTCCCATCAATTAAATACAAAAAATCACCATGGTGATGTTGTTCTGTTAGTATAATGG
************************************************************
HS_haplotype1 TGAAATGTGAGGCAGGGCTAGGTCTGCGATTATGTGCGCAGCCAATTTTGTATAAATGCA
HS_assemblymutate_np1212 TGAAATGTGAGGCAGGGCTAGGTCTGTGATTATGTGCGCAGCCAATTTTGTATAAATGCA
HS_haplotype2 TGAAATGTGAGGCAGGGCTAGGTCTGTGATTATGTGCGCAGCCAATTTTGTATAAATGCA
************************** *********************************
HS_haplotype1 AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA
HS_assemblymutate_np1212 AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA
HS_haplotype2 AGATTAAAAAGACATTTTTCTCTATTTCCTGGCCCTGTCCTAGCCTCAGCCCCGTCTGTA
************************************************************
HS_haplotype1 TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATATCAACGTAACCCTCCATCAGAGAGAA
HS_assemblymutate_np1212 TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATCTCAACGTAACCCTCCATCAGAGAGAA
HS_haplotype2 TCCTTCCCTCAGTGGAGGCCGAGACAAACAAATCTCAACGTAACCCTCCTTCAGAGAGAA
********************************* *************** **********
HS_haplotype1 TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTGCCACTGCA
HS_assemblymutate_np1212 TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTGCCACTGCA
HS_haplotype2 TATGATTGCACGGCACCACGCTAATAACTTAACGGAGCGTGGGGGAGGCGTCCCACTGCA
*************************************************** ********
HS_haplotype1 GTCCCATCTAGGGTTCATCACCGGGCCTGGCAGCCCAGCTACTTAATACCTTAGGATGGT
HS_assemblymutate_np1212 GTCCCATCTAGGGTTCATCACCGGGCCTGGCAGCCCAGCTACTTAATACCTTAGGATGGT
HS_haplotype2 GTCCCATCTAGGGTTCATCACAGGGCCTGGCAGCCCAGCTACTTAATACCTCAGGATGGT
********************* ***************************** ********
HS_haplotype1 AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCAGGCTGGGCACCGGTTATT
HS_assemblymutate_np1212 AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCAGGCTGGGCACCGGTTATT
HS_haplotype2 AGGGAAGCGGGTCGTGAGATGAATGCACTTTAAAAATGGCCTGGCTGGGCACCGGTTATT
***************************************** ******************
HS_haplotype1 TGTATTTAGAGATATTACACTAGCATACACAATAAATGTGTGTAACCTCTGCCGAGTCGC
HS_assemblymutate_np1212 TGTATTTAGAGATATTACACTAGCATACACAATAAATGTGTGTAACCTCTGCCGAGTCGC
HS_haplotype2 TGTATTTAGAGATATTACACTAGCATCCACAATAAATGTGTGTAACCTCTGCCGAGTCGC
************************** *********************************
HS_haplotype1 CCGCCTGGGGCCTAAAGAAACTAGCTGTCCTTCGCTCGCGCGTTTCCAGATGGTGAGGAG
HS_assemblymutate_np1212 CCGCCTGGGGCCCAAAGAAACTAGCTGTCCTTCGCTCGCGCGTTCCCAGATGGTGAGGAG
HS_haplotype2 CCGCCTGGGGCCCAAAGAAACTAGCTTTCCTTCGCTCGCGCGTTCCCAGATGGTGAGGAG
************ ************* ***************** ***************
HS_haplotype1 CTGTTCCTCTTCCATTTTTGTAGCCATACATAGAATTTAGATGCTGAGGAGGGACGCCCC
HS_assemblymutate_np1212 CTGTGCCTCTTCCATTTTTGTAGCCATACATAGAATTTGGATGCTGAGGAGGGACGCCTC
HS_haplotype2 CTGTGCCTCTTCCATTTTTGTAGCCATACATAGAATTTGGATGCTGAGGAGGGACGCCTC
**** ********************************* ******************* *
HS_haplotype1 ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA
HS_assemblymutate_np1212 ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA
HS_haplotype2 ATTAATGGAGCCTGGAGCCTCTCTCCTCCCAGGCAGCCTCCGCCAGGCCTTGGAGATGAA
************************************************************
HS_haplotype1 ATTGCTTGTGTAAACGACTGTTGCAGGAACACCAAGTATTTTCGTTAAGGAACCCCAACC
HS_assemblymutate_np1212 ATTGCTTGTGTAAACGACTGTTGCTGGAACACCAAGTATTTTCGTTAAGGAACCCCAACC
HS_haplotype2 ATTGCTTGTGTAAACGACTGTTGCTGGAACACCAAGTATTTTCGTTAAGGAACCCCAGCC
************************ ******************************** **
HS_haplotype1 TGGGTGACACAAGATTCTCGCTTGTATTTTTAAAAAACAAAAAAATTTTGAGTATATATC
HS_assemblymutate_np1212 TGGGTGACACAAGATTCTCGCTTGTGTTTTTAAAAAACAAAAAAATTTTGAGTATATATC
HS_haplotype2 TGGGTGACACTAGATTCTCGCTTGTGTTTTTAAAAAACAAAAAAATTTTGAGTATATATC
********** ************** **********************************
HS_haplotype1 CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACATCTACAGCAGGGGCTTATATCTTTTC
HS_assemblymutate_np1212 CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACATCTACAGCAGGGGCTTATATCTTTTC
HS_haplotype2 CCTTGGTGAAGAAAGCTTGTTTGTCCAGAGCACAGCTACAGCAGGGGCTTATATCTTTTC
********************************** *************************
HS_haplotype1 ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT
HS_assemblymutate_np1212 ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT
HS_haplotype2 ATCTTCAATGACTTCCTGCCTGTGTACCTCTGTAGACCAGGCCCATCTCAGGGAGATCAT
************************************************************
HS_haplotype1 AATTGGGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC
HS_assemblymutate_np1212 TATTGTGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC
HS_haplotype2 TATTGTGAAAAGATCGAGTTCCACATGGTGTGTCAGGCTACTTGAGATCTATGGTCTTGC
**** ******************************************************
HS_haplotype1 CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG
HS_assemblymutate_np1212 CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG
HS_haplotype2 CAGGATGAATTTGGGTGGCAATCTAACAAAAATTAAAACTCCCAGCAACAATTTCTGGAG
************************************************************
HS_haplotype1 GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCATCCACTGCAGTGGTA
HS_assemblymutate_np1212 GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCAACCACTGCAGTGGTA
HS_haplotype2 GTCATTGTGGGACTTGTGGTCTCTGGTCGCTTCCAATGATATTCAACCACTGCAGTGGTA
********************************************* **************
HS_haplotype1 AATTCTCAAGCGATTCTTCTGAATTTGCAGTGTATGAACAGATGTAATCCCCCGTCCAGT
HS_assemblymutate_np1212 AATTCTCAAGCGATTCTTCTGAATTTGCAGTGTATGAACAGATGTAATCCCCCGTCCAGT
HS_haplotype2 AATTCTCAAGCGATTCTTCTGAATTTGCAGTGTATGAACAGATGTAATCCCCCGTACAGT
******************************************************* ****
HS_haplotype1 GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT
HS_assemblymutate_np1212 GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT
HS_haplotype2 GGTTTTTAGTATTTACTGGAAGCCGGGCGAGCAAAGCAACACACAACCAGCCTCTACATT
************************************************************
HS_haplotype1 TTACTCTGGCTTTTGTATTTTAAGGGTTTACTGCTTTACATTCTGCCTCCGTCTTAACTA
HS_assemblymutate_np1212 TTACTCTGGCTTTTGTATTTTAAGGGTTTACTGCTTTACATTCTGCCTCCGTCTTAACTA
HS_haplotype2 TTACTCTGGCTTTTGTATTTAACGGGTTTACTGCTTTAAATTCTGCCTCCGTCTTAACTA
******************** * *************** *********************
HS_haplotype1 GTAAATATGAAAATGGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC
HS_assemblymutate_np1212 GTAAATATGACAATAGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC
HS_haplotype2 GTAAATATGACAATAGAACATGAGCTTTCAACACGGAATCACAAGAGAAGTTAACAAACC
********** *** *********************************************
HS_haplotype1 ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATTAAGAATGT
HS_assemblymutate_np1212 ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATCAAGAATGT
HS_haplotype2 ATTTTTTCTACTCTCCCAGCTCAGCCTGTAGCTGGTGAAAAAACAGCACATCAAGAATGT
*************************************************** ********
HS_haplotype1 AAGTGACCAAAAGACCCTCTTCAGTAGCGATCTAACTTTTAGAAGCACTCTCATCTGGAC
HS_assemblymutate_np1212 AAGTGACCAAAAGACCCTCTTCTGTAGCGAACTAACTTTTAGAAGCACTCTCATCTGGAC
HS_haplotype2 AAGTGACCAAAAGACCCTCTTCTGTAGCGAACTAACTTTTAGAAGCACTCTCATCTGGAC
********************** ******* *****************************
HS_haplotype1 AGTGAAGGCTGGTTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT
HS_assemblymutate_np1212 AGTGAAGGCTGGCTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT
HS_haplotype2 AGTGAAGGCTGGCTCCAGACGGAGTGCTGAGAATCCCCTGTCCTAGGTCAGGTGCCTCCT
************ ***********************************************
HS_haplotype1 AGGTGAAAATATGTGTGATACAACAGATGAAATAGGGTAGCTACTCTTCTACATTTGCAA
HS_assemblymutate_np1212 AGGTGAAAATATGTGTGATACAACAGATGAAATAGGGTAGCTACTCTTCTACATTTGCAA
HS_haplotype2 AGGTGAAAATATGTGTGATACAACAGATGAAATAGGGTAGCTACTCTTCTACATTTGCAA
************************************************************
HS_haplotype1 TTGAGAAGACTCTTTCCTTAGGTATCATTGGTCCCCAGCCTGTTGGTACTGATGGACCGG
HS_assemblymutate_np1212 TTGAGAAGACTCCTTCCTTAGGTATCATTGGTCCCCAACCTGTTGGGACTGATGGACCGG
HS_haplotype2 TTGAGAAGACTCCTTCCTTAGGTATCATTGGTCCCCAACCTGTTGGGACTGATGGACCGG
************ ************************ ******** *************
HS_haplotype1 GGTGTGTGTATTTTAACTCCTGTAAACAACCATAATATTCAGCTCTAGGAATTCATGTTG
HS_assemblymutate_np1212 GGTGTGTGTATTTTAACTCCTGTATACAACCATAATATTCAGCTCTAGAAATTCATGTTG
HS_haplotype2 GGTGTGTGTATTTTAACTCCTGTATACAACCATAATATTCAGCTCTAGAAATTCAGGTTG
************************ *********************** ****** ****
HS_haplotype1 CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGTCTGGGTGACA
HS_assemblymutate_np1212 CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGTCTGGGTGACA
HS_haplotype2 CCAGCCTCTCCTCAGGGCAGGTGCCATTTATAGTTGCCCTGTAGAGAAGGTTGGGTGACA
************************************************* *********
HS_haplotype1 TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC
HS_assemblymutate_np1212 TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC
HS_haplotype2 TATTAGACCTCACCTTACACCAATACTATGACAATGAAAAAGCAGAGAAACACTCTTAGC
************************************************************
HS_haplotype1 GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATTCCAGGAGTTCAG
HS_assemblymutate_np1212 GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATCCCAGGAGTTCAG
HS_haplotype2 GTGTTTGGCAGATTCAAAGACGGAAGGAAAAGACTACAAATAAGAATCCCAGGAGTTCAG
*********************************************** ************
HS_haplotype1 AAAGTCCAACGACTGTCCCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT
HS_assemblymutate_np1212 AAAGTCCAAAGACTGTCTCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT
HS_haplotype2 AAAGTCCAAAGACTGTCTCTTTGTCCTTATATATTTTAAAGAAAGCGCGGCATTTCACAT
********* ******* ******************************************
HS_haplotype1 GATAATCACAGGACAACTAACCAGATGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT
HS_assemblymutate_np1212 GATAATCACAGGACAACTAACCAGTTGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT
HS_haplotype2 GATAATCACAGGACAACTAACCAGTTGGGGCAGATAAAGAAGGGAAACGTTATTGTATTT
************************ ***********************************
HS_haplotype1 AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAATTA
HS_assemblymutate_np1212 AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAATTA
HS_haplotype2 AGCTACGTGCCAGAGGAAAAGCAGCTCACTGATGTGCCACTGCCCAGGGTAAGAAAATTA
************************************************************
HS_haplotype1 AGGTCAGGACACGCTGCAGCTCTCCAAATGACTATAGCCTTTTCCTTCAGAAGGCAATCC
HS_assemblymutate_np1212 AGGTCAGGACACGCTGCAGCTCTCCAAATGACTATAGCCTTTTCCTTCAGAAGGCAATCC
HS_haplotype2 AGGTCAGGACACTCTGCAGCTCTCCAAATGACTATAGCCTTTTCCTTCAGAAGGCAATCC
************ ***********************************************
HS_haplotype1 AGTCATCCGCGCCGGGCCCTGAGTGGTGAGGTGATACTGCATGAAGACAGGCCTCCAAGG
HS_assemblymutate_np1212 AGTCATCCGCGCCGGGCCCTGAGTGGTGAGGTGATACTGCATGAAGACAGGCCTCCAAGG
HS_haplotype2 AGTCATCCGCGCCGGGCCCTGGGTGGTGAGGTGATACTGCATGAAGACTGGCCTCCAAGG
********************* ************************** ***********
HS_haplotype1 CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA
HS_assemblymutate_np1212 CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA
HS_haplotype2 CTGCTGTGTGTCTAGATAAAAGTTACTTACGCATACCAAAGAAATTAGCCGCTGCCTCCA
************************************************************
HS_haplotype1 GCGAGGGAACCTGCCTCACCTCTGTTCAACGCTATGGCTGCCTGGCAAGCTTGCAGGGCA
HS_assemblymutate_np1212 GCGAGGCAACCTGCCTCACCTCTGTTCAACGCTATGGCTGCCTGGCAAGCTTGCAGGGCA
HS_haplotype2 GCGAGGCAACCTGCCTCACCTCTGTTCAATGCTATGGCTGCCTGGCAAGCTTGCAGGGCA
****** ********************** ******************************
HS_haplotype1 GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGGGAACAGAAGAAAT
HS_assemblymutate_np1212 GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGGGAACAGAAGAAAT
HS_haplotype2 GCGGATAGTCTTCCCCTCCTGGACTGATGGGAGACCACCCAGGGTGGGAACAGAAGAAAT
************************************************************
HS_haplotype1 ATCAATTACGTTCATCAAGGGTACTATGTTAAAGGAAATGTGTTTTAGGAGGACCCGGAC
HS_assemblymutate_np1212 ATCAATTACGTTCATCAAGGGTACTATGTTAAAGGAAATGTGTTTTAGGAGGACCCGGAC
HS_haplotype2 ATTAATTACGTTCATCAAGGGTACTATGTTAAAGGAAATGTGTTTTAGGAGGACCCGGAC
** *********************************************************
HS_haplotype1 AAACATGTTGTGTCTCGCTTTTTTCATACAAATGAGATCTAGAGTACTTGGCTCCACACC
HS_assemblymutate_np1212 AAACATGTTGTGTCTCGCTTTTTTCATACAAATGAGATCTAGAGTACTTGGCTCCACACC
HS_haplotype2 AAACATGTTGTTTCTCGCTTTTTTCATACAAATGAGATCTAGACTACTTGGCTCCACACC
*********** ******************************* ****************
HS_haplotype1 AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC
HS_assemblymutate_np1212 AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC
HS_haplotype2 AACCAGATTTAAGAAAAAGAGCACAACAACTACAAATCTCGCTCCCCTCAAAGATTCTTC
************************************************************
HS_haplotype1 CCCAGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA
HS_assemblymutate_np1212 CCCGGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA
HS_haplotype2 CCCGGCCATGTTGTTGGGTGGGGAGGAAGATAGATACTGCAATTGGGGGCAAAGCCAGGA
*** ********************************************************
HS_haplotype1 TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGGTGAATGACAGCC
HS_assemblymutate_np1212 TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGGTGAATGACTGCC
HS_haplotype2 TTCCTGTTTGGGGACCCATCAAACTCAATACAAGGTCATTAGCTGAGGTGAATGACTGCC
******************************************************** ***
HS_haplotype1 TCCCTGGATTACAACGTGGGTCAATGAAAATTATTTGGTCTTCATACCTCATCTGTGTAA
HS_assemblymutate_np1212 TCCCTGGATTACAACGTGGGTCAATGAAAATTTTTTGGTCTTCATACCTCATCTGTGTAA
HS_haplotype2 TCCCTGGATTACAACGTGGGTCAATGAAAATTTTTTGGTCTTCATACCTCATCTGTGTAA
******************************** ***************************
HS_haplotype1 GCTTCAAACCACTGCTTGTATAGGAGTTCACTTAGCGGGCGGAATCCCTCCCTGTCCCTT
HS_assemblymutate_np1212 GCTTCAAACCTCTGCTTGTATAGGAGTTCACTTAGCGGCCGGAATCCCTCCCTGTCCCTT
HS_haplotype2 GCTTCAAACCTCTGCTTGTATAGGAGTTCACTTAGCGGCCGGAATCCCTCCCTGTCCCTT
********** *************************** *********************
HS_haplotype1 AAGGGAGAATTGAAGGCCCTCAGGTACTGGGTCTCATCGTGCAGTAGCTGAGGGGCCAGA
HS_assemblymutate_np1212 CAGGGAGAATTGCAGGCCCTCAGGTACTGGGTCTCATCGTGCAGTAGCTGAGGGGCCAGA
HS_haplotype2 CAGGGAGAATTGCAGGCCCTCAGGTACTGGGTCTCATCATGCAGTAGCTGAGGGGCCAGA
*********** ************************* *********************
HS_haplotype1 TCCAACGTCCGTCCCCTCAGGTTTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC
HS_assemblymutate_np1212 TCCAACGTCCGTCCCCTCAGGTTTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC
HS_haplotype2 TCCAACGTCCGTCCCCTCAGGTGTGCACTAAACAAGGAGAGGTGGCTGAGTTGTATGATC
********************** *************************************
HS_haplotype1 TTTCCGCTGAGCCATCTCAAATTCGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA
HS_assemblymutate_np1212 TTTCCGCTGAGCCATCTCAAATTCGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA
HS_haplotype2 TTTCCGCTGAGCCATCTCAAATACGAACCCAGGGACAGAAACCAGCTGAATTCTTTGAAA
********************** *************************************
HS_haplotype1 GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTGCTGGG
HS_assemblymutate_np1212 GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTCCTGGG
HS_haplotype2 GCAAGAGGACCCACGCCGGCATTAAAAATTTGACATGTGGGAGATGCATTGACTCCTGGG
****************************************************** *****
HS_haplotype1 CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGCTCCAA
HS_assemblymutate_np1212 CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGCTCCAA
HS_haplotype2 CTAAGAAATAATAAAAATGCAGCTCACCGCTTCGCTCACGGAGCTGACCAAGAGCTCCAA
************************************************************
HS_haplotype1 TTCAAGAAGACCCAGGCAGTGAGCCCAGCCCCCCAGCTCCGTCGTGGAGAAGGATGATTA
HS_assemblymutate_np1212 TTCAAGAAGACCCAGGCAGTGAGCCCAGCCCCCCAGCTCCGTCGTGGAGAAGGATGATTA
HS_haplotype2 TTCAAGAAGGCCCAGGCAGTGAGCCCAGCCCCCCAGCTCCCTCGTGGAGAAGGATGCTTA
********* ****************************** *************** ***
HS_haplotype1 TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTGTTATACTTTGGCTTAAACCCG
HS_assemblymutate_np1212 TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTGTTATACTTTGGCTTAAACCCG
HS_haplotype2 TCTCCTCCCTGGGGTGGCTCTCCAGGCATTTATTCCGTTTTATACTTTGGCTTAAACCCG
************************************** *********************
HS_haplotype1 GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGATCTCTGTAG
HS_assemblymutate_np1212 GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGATCTCTGTAG
HS_haplotype2 GGCGCAGGTCTCAATCATCAATGCTATAGATCACATGGATTACAGATTGGATCTCTGTAG
************************************************************
HS_haplotype1 AGGCAGCCACCCGATTACAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACAATAGG
HS_assemblymutate_np1212 AGGCAGCCACCCGATTACAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACTATAGG
HS_haplotype2 AGGCAGCCACCCGATTGCAGAAACATCTCAGAAGTCTTAAAGGCCCTGTCCTACTATAGG
**************** ************************************* *****
HS_haplotype1 GTTCAGACACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCC
HS_assemblymutate_np1212 GTTCAGACACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCC
HS_haplotype2 GTTCAGAAACAGAGCATTGTTTTAAGGACTGCATTTTCAACTCATCTTTTCTTCAGGTCC
******* ****************************************************
HS_haplotype1 AGTCAATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG
HS_assemblymutate_np1212 AGTCAATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG
HS_haplotype2 AGTCAATGCACCGATCATAGCCTGAGCAGATATAAACATAGTTATAATAAGGGTCTAGGG
************************************************************
HS_haplotype1 TTTGAGATTTTAAACAATTTACATGCTCCTGGAAAATTTTTTCTGACAGAGAGATCAGCT
HS_assemblymutate_np1212 TTTGAGATTTTAAACAATTTACATGCTCCTGGAAAATTTTTTCTGACAGAGAGATCAGCT
HS_haplotype2 TTTGAGATTTTAAACAATTTACATGCTCCTGGAAAATTTTTTCTGACAGAGAGATCAGCT
************************************************************
HS_haplotype1 AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTCACCTCA
HS_assemblymutate_np1212 AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTCACCTCA
HS_haplotype2 AAATCCCGGGCACAAAGCACCTGAGTTTTCCCTATCTTGCTTTGAGTTATTGTAACCTCA
***************************************************** ******
HS_haplotype1 CAACAGGCTGCTCGTCGAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG
HS_assemblymutate_np1212 CAACAGGCTGCTCGTCGAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG
HS_haplotype2 CAACAGGCTGCTCGTCCAGGTGCCAGGAATCCATCTTTGGTGAGGGAGTTCAAAGCTTTG
**************** *******************************************
HS_haplotype1 GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATTATTTGTGATGGCTTGGTG
HS_assemblymutate_np1212 GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATGATTTGTGATGGCTTGGTG
HS_haplotype2 GGGTATATGGAGTATGACCAGATCCTGGTCAGAAAAAATATGATTTGTGATGGCTTGGTG
***************************************** ******************
HS_haplotype1 CACATTTATGTAATTGCTGTAATACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC
HS_assemblymutate_np1212 CACATATATGTAATTGCTGTACTACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC
HS_haplotype2 CACATATATGTAATTGCTGTACTACAGGCTGCGAAATGAGAAGAAAGTCTCTGTGAGACC
***** *************** **************************************
HS_haplotype1 CTGAGCGCGAGGTAATTCGCTAGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT
HS_assemblymutate_np1212 CTGAGCGCGAGGTAATTCGCTCGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT
HS_haplotype2 CTGAGCGCGAGGTAATTCGCTCGGCCCATGTAAACTATTCTTTGGTGGAGATGTACAGCT
********************* **************************************
HS_haplotype1 CACCCGCTGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG
HS_assemblymutate_np1212 CACCCGCTGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG
HS_haplotype2 CACCCGCGGCCTTTGCTCAAGGAAAAATCCACTATTCAAGTCATAATACAATTTCTGGAG
******* ****************************************************
HS_haplotype1 GTTCTTCAGAGTTTACCAGCCCAGCTGTTTTAACTCTGCCATAACACTTCAAAAGCACGT
HS_assemblymutate_np1212 GTTCTTCAGAGTTTACCAGCCCAGCTGTTTTAACTCTGCCATAACACTTCAAAAGCACGT
HS_haplotype2 GTTCTTCAGAGTTTACCAGCCGAGCTGTTTTAACTCTGCAATAACACTTCAAAAGCACGT
********************* ***************** ********************
HS_haplotype1 TATGTAATATATACACTTCATCACCTGGCTTGAATATTGAGGAGTTGGGGTGTCCGCCAA
HS_assemblymutate_np1212 TATGTAATATATACACTTCATCACCTGGCTTGAATATTGAGGAGTTGGGGTGTCCGCCAA
HS_haplotype2 TATGTAATATATACACTTCCCCACCTCGCTTGAATATTGAGGAGTTGGGGTGTCCGCCAA
******************* ***** *********************************
HS_haplotype1 CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC
HS_assemblymutate_np1212 CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC
HS_haplotype2 CCCCATTCATTCTATATGTAAATGTTAACATTAACCAACCCCACTTATCTTCAGGGTGGC
************************************************************
HS_haplotype1 ATAAAATACTCTATGTCTGGTAACCTCTGAAATTGCTTTGGGGGATTATGAAGAAACTGA
HS_assemblymutate_np1212 ATAAAAAACTCTATGTCTGGTAACCTCTGAAATTGCTTTGGGGGATTATGAAGAAACTGA
HS_haplotype2 ATAAAAAACTCTATGTCTGGTAACCTCTGAAATTGCTTTGGGGGATTATGAAGAAACTGA
****** *****************************************************
HS_haplotype1 ACAACATTTTTGTTCAAACATATGTTTGAACACCTATGCCCCTAGATCAAGTAGCTTTCC
HS_assemblymutate_np1212 ACAACATTTTTGTTCAAACATATGTTTGAACACCTATGCCCCTAGATCTAGTAGCTTTCC
HS_haplotype2 ACAACATTTTTGTTCAAACATATGTTTGAACACCTATGCCCCTAGATCTAGTAGCTTTCC
************************************************ ***********
HS_haplotype1 TTATTTATATCTGGGTTTTGATCTCTATTCAAGGACTGGGCTTACTAGATAACCTGGAGT
HS_assemblymutate_np1212 TTATTTATATCTGGGTTTTGATCTCTATTCAAGGACTGGGCTTACTGGATAACCTGGAGT
HS_haplotype2 TTATTTATATCTGGGTTCTGATCTCTATTCAATGACTGGGCTTACTGGATAACCTGGAGT
***************** ************** ************* *************
HS_haplotype1 TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTAGTGGTTTTTCCGCCATG
HS_assemblymutate_np1212 TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTACTGGTTTTTCCACCATG
HS_haplotype2 TCTATTCTACTGTGCCTGTTCTGATATTGTCCTTGGTAGCTTACTGGTTTTTCCACCATG
******************************************* ********** *****
HS_haplotype1 GCAACCCCAATTTCTACTTGGCTCATCCTCCCGCCGCGTGGCCCCTCCACTGCAACTACA
HS_assemblymutate_np1212 GCAACCCCAATTTCTACTTGGCTCATCCTCCCGCCGCGTGGCCCCTCCACTGCAACTACA
HS_haplotype2 GCAACCCCAATTTCTACTTGGCTCATCCTCCCGCCGCGTGGCCCCTCCACTGCAACTACA
************************************************************
HS_haplotype1 TCCCCGACCAGATCGATTGTGCTACTAATTCTCTATCCGATGTATTACATTGTGGAGAGA
HS_assemblymutate_np1212 TCCCCGACCAGATCGATAGTGCTACTAATTCTCTATCCAATGTAATACATTGTGGAGAGA
HS_haplotype2 TCCCCGACCAGATCGATAGTGCTACTAATTCTCTATCCAATGTAATACATTGTGGAGAGA
***************** ******************** ***** ***************
HS_haplotype1 GTATGTACATACCTAAGAGTGGTTCTCCACCGTGTTGTTTGTGACAATCGTAAAATTGCA
HS_assemblymutate_np1212 GTATGTACATACCTAAGAGTGGTTCTCCACCGTGTTGTTTGTGACAATCGTTAAATTTCC
HS_haplotype2 GTATGTACATACCTAAGAGTGGTTCTCCACCGTGTTGTTTGTGACAATCGTTAAATTTCC
*************************************************** ***** *
HS_haplotype1 GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC
HS_assemblymutate_np1212 GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC
HS_haplotype2 GTGATCTGTTGGTTAGTACCCTTTACCGTGCCCCTCTTACAGTCTGGGAACCCAGTTAGC
************************************************************
HS_haplotype1 CAGCTGTTTTTTAGAGACTTTAATGAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC
HS_assemblymutate_np1212 CAGCTGTTTTTTAGAGACTTTAATTAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC
HS_haplotype2 CAGCTGTTTTTTAGAGACTTTAATTAGGAGCTTCCAACTCAGGATCCGGAGCAGCTACTC
************************ ***********************************
HS_haplotype1 TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT
HS_assemblymutate_np1212 TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT
HS_haplotype2 TAGTTATATATATTTTGAGTCCTCTCCTTCCTACAGATCCCCCGAATTTTTTGTGATATT
************************************************************
HS_haplotype1 GCTCTGCTTTGCAGTATGGTCAGGTGACAGAAACATGGGAGGTAGAGTAGTATATTTAAT
HS_assemblymutate_np1212 GCTCTGCTTTGCAGTATGGTCAGGTGACAAAAACATGGGAGGTAGAGTAGTATATTTAAT
HS_haplotype2 GCTCTGCTTTGCAGTATGGTCAGGTGACAAAAACATGGGAGGTAGAGTAGTATATTTAAT
***************************** ******************************
HS_haplotype1 TGAACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG
HS_assemblymutate_np1212 TGTACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG
HS_haplotype2 TGTACTGATTGCGCGATTTACAGCTGGTAGAGCCCTTAGATACTTAAGGAAAGAGGCAGG
** *********************************************************
HS_haplotype1 AATGTTTCCTTCTGTACGGAAAGATGTCCTTTGGAATATCTCAGTTTAGTCTAATCCCCT
HS_assemblymutate_np1212 AATGTTTCCTTCTGTACGGAAAGATGTCATTTGGAATATTTCAGTTTAGTCTAATCCCCT
HS_haplotype2 AATGTTTCCTTCTGTACGGAAAGATGTCATTTGGAATATTTCAGTTTAGTCTAATCCCCT
**************************** ********** ********************
HS_haplotype1 TTTTCTTCCGACTACATGTGTATTTTTGTAGATGCTTGGCCTACAGCCTCTTTCTCGGCA
HS_assemblymutate_np1212 TTTTCTTCCGACTACATGTGTATTTTTGCAGATGCTTGGCATACAGTCTCTTTCTCGGCA
HS_haplotype2 TTTTCTTCCGACTACATGTGTATTTTTGCAGATGCTTGGCATACAGTCTCTTTCTCGGCA
**************************** *********** ***** *************
HS_haplotype1 CTCCGCTTTGGGAGTGGGGCAGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT
HS_assemblymutate_np1212 CTCCGCTTTGGGAGTGGGGCAGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT
HS_haplotype2 CTCCGCTTTGGGAGTGGGGCTGAAGGACGACTTGAAGTAAACTTAAAATTGTAATCTTAT
******************** ***************************************
HS_haplotype1 CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG
HS_assemblymutate_np1212 CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG
HS_haplotype2 CTTCAGAGCAATCAATAGAAGTGAAGAGATTTTGACATTTCTTAAAATAATTTTAGGCTG
************************************************************
HS_haplotype1 GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG
HS_assemblymutate_np1212 GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG
HS_haplotype2 GGCAGAAGCCGAGCTGAGCCCCAATCTTAAAAACTGGGTCAATAAAAGACTTTTCTAATG
************************************************************
HS_haplotype1 CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC
HS_assemblymutate_np1212 CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC
HS_haplotype2 CCATAGCAATATCAACAAAAGACCTTCCTTTTGACCCAAATATATCTTGGCTGGAGTCTC
************************************************************
HS_haplotype1 ATTAATCATGTGCGTGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG
HS_assemblymutate_np1212 ATTAATCATGTGCGTGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG
HS_haplotype2 ATTAATGATGTGCATGAGCCTTGTTGAATCCTTACTAAAATATTGAAAACAAAATCCGAG
****** ****** **********************************************
HS_haplotype1 TGCATCATTTGTGTCCTGCTGATGGGCTGTGTATATGGGGGCAAGACATTCTCTACTTTT
HS_assemblymutate_np1212 TGCATCATTTGTGTCCTGCTGATGGGCTGTGTATATGGGGGCAAGACATTCTCTACTTTT
HS_haplotype2 TGCATCATTTGTGTCCTGCTGATGGGCTGGGTATATGGGGGCAAGACATTCTCTACTTTT
***************************** ******************************
HS_haplotype1 CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC
HS_assemblymutate_np1212 CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC
HS_haplotype2 CTGTAATATCAGTAAGAGGGGCTCAGGCTGACAGCACTTTGACTGAGCCTTTAAAAATGC
************************************************************
HS_haplotype1 AGACTTCTTAAGAGAATTTGCACTTTAAAGGCTGTAAAAACCATCTTTGTAGAGTGTATA
HS_assemblymutate_np1212 AGACTTCTTAAGAGAATTTGCACTTTAAAGGCTGTAAAAACCATCTTTGTAGAGTGTATA
HS_haplotype2 AGACTTCTTAAGAGAATTTGCACTTTACAGGCTGTAAAAACCATCTTTGTAGAGTGTATA
*************************** ********************************
HS_haplotype1 GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA
HS_assemblymutate_np1212 GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA
HS_haplotype2 GCTTCCTCATTGCTGCACCCACCACTTGAACATGCAACATCACCCAAGGTTGTTTCGTAA
************************************************************
HS_haplotype1 TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGATTTAAATAATCCAGAAGAGAGGCTGCA
HS_assemblymutate_np1212 TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGATTTAAATAATCCAGAAGAGAGGCTGCA
HS_haplotype2 TAAAAGATTTTTCTATTTTGCAGAGGAAGTGGGTTTAAATAATCCAGAAGAGAGGCTGCA
******************************** ***************************
HS_haplotype1 CTCGTGACCTCCCAGTTATTGCATTGTAGTGCTGGCCAGTGGAGGGACGAGTATATAATT
HS_assemblymutate_np1212 CTCGTGACCTCCCAGTTATTGCATTGTAGTGCTGGCCAGTGGAGGGACGAGTATATAATT
HS_haplotype2 CTCCTGACCTCCCACTTATTGCATTGTAGGGCTGGCCAGTGGAGGGAAGAGTATATAATT
*** ********** ************** ***************** ************
HS_haplotype1 TCTCCCAGCCCGTCGGTGGTGTGGTGGTTTTTAATCTTTGCATGGCTCAACTCAATTGCT
HS_assemblymutate_np1212 TCTCCCAGCCCGTCGGTGGTGTGGTGGTTTTTAATCTTTGCATGGCTCAACTCAATTGCT
HS_haplotype2 TCTCCCAGCCCCTCGGTGGGGTGGTGGTTTTTAATCTTTGCATGGCTCAACTCAATTGCT
*********** ******* ****************************************
HS_haplotype1 CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA
HS_assemblymutate_np1212 CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA
HS_haplotype2 CCAGCTGAGTTCAAAGAAGAAGGAACCCCCTCAGGTGGTTAGTGAGATAGTGGAGCATGA
************************************************************
HS_haplotype1 AAGTGTCAACTCTCCAATCTCATCTATTCATCAGGTAAATAACGCCCACTGAGCTATAGG
HS_assemblymutate_np1212 AAGTGTCAACTCTCCAATCTCATCTATTCATCAGGTAAATAACGCCCACTGAGCTATAGG
HS_haplotype2 AAGTGTCAACTCTCCAATCTCATCTATTCATCACGTAAATAACGCCCACTGAGCTATAGG
********************************* **************************
HS_haplotype1 GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT
HS_assemblymutate_np1212 GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT
HS_haplotype2 GTGGATACTGCACAAGGTTCCATTTGGGGAAGTGAGAATCACACCACCAGGGTGTGCCAT
************************************************************
HS_haplotype1 TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGGAACTACAGTGGCA
HS_assemblymutate_np1212 TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGGAACTACAGTGGCA
HS_haplotype2 TAAAATATCACTGCTTATTGAAGTAAATTTTAAAAATGTCAGCCTGGAACTACAGTGGCA
************************************************************
HS_haplotype1 TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAATACCACTGTGCAGTT
HS_assemblymutate_np1212 TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAATACCACTGTGCAGTT
HS_haplotype2 TTAAGCCATGTCAGGATTAATAGCGTCCACAGTGTTACAGAGAAATACCACTGTGCAGTT
************************************************************
HS_haplotype1 CCACCATCTAACTAACTCCCCACCTGTAATCCCTCCAAGTTTGTCACCTCTCCTGTACTT
HS_assemblymutate_np1212 CCACCATCTAACTAACTCCCCACCTGTAATCCCTCCAAGTTTGTCACCTCTCCTGTACTT
HS_haplotype2 CCACCATCTAACTAACTCCCCACCTGTAATCCCTCCAAGTTTGTCACCTCTCCTGTACTT
************************************************************
HS_haplotype1 CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGTATACAAATCCCTCAGCATTT
HS_assemblymutate_np1212 CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGTATACAAATCCCTCAGCATTT
HS_haplotype2 CAGGATCTGAGTTCATTTATGGGAGTCTTTAATCTATTGCATACAAATCCCTCAGCATTT
*************************************** ********************
HS_haplotype1 CAGAAGTAAGTAAACCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGTATTGTT
HS_assemblymutate_np1212 CAGAAGTAAGTAAACCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGTATTGTT
HS_haplotype2 CAGAAGTAAGTAAACCCTGTATTTCAATAATCCTTGTTCTAGGATATATCTCGTATTGTT
************************************************************
HS_haplotype1 TGTGAGAAGTTGAGAAATTATCATAACCTAATTTATGAGCAACATGTCATATGTTAACAT
HS_assemblymutate_np1212 TGTGAGAATTTGAGAAATTATCATAACCTAATTTATGAGCAACATGTCATATGTTAACAT
HS_haplotype2 TGTGAGAATTTGAGAAATTATCATAACCTAATTTATGGGCAACATGTCATATGTTAACAT
******** **************************** **********************
HS_haplotype1 TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAGTCACTTCTCCTCTGAGCCCTATCAGC
HS_assemblymutate_np1212 TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAGTCACTTCTCCTCTGAGCCCTATCAGC
HS_haplotype2 TGAGAAGGAATCCCAAGTGAAAATCTGCAGAAAATCACTTCTCCTCTGAGCCCTATCAGC
********************************* **************************
HS_haplotype1 CAAAAAGAATTAGAAGATCTCGGGAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA
HS_assemblymutate_np1212 CAAAAAGAATTAGAAGATCTCGGGAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA
HS_haplotype2 CAAAAAGAATTAGAAGATATCGGCAGGGGCCTTGAGTCTCTGGTCAAGACCTCTACTATA
****************** **** ************************************
HS_haplotype1 ATATTTTTAAGACTCAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGGTACCA
HS_assemblymutate_np1212 ATATTTTTAAGACTCAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGGTACCA
HS_haplotype2 ATATTTTTAAGACTAAGCCATGCATCCTCCCTGTTTCAGGTCAGGCATGTACTGGTACCA
************** *********************************************
HS_haplotype1 CGCCTGGATGAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG
HS_assemblymutate_np1212 CGCCTGGATGAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG
HS_haplotype2 CGCCTGGATGAGTCTATTGTGGAGGAGCCGCAGAAGGGCTTATATATTATGTTGAGAGTG
************************************************************
HS_haplotype1 ATCATCTGAATAAGATCTATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA
HS_assemblymutate_np1212 ATCATCTGAATAAGATCTATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA
HS_haplotype2 ATCATCTGAATAAGATATATCTCACAGGAGGAGTTCATACTCTGGGACGCAATGATTGGA
**************** *******************************************
HS_haplotype1 GAACCCAGGTGATGAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA
HS_assemblymutate_np1212 GAACCCAGGTGATCAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA
HS_haplotype2 GAACCCAGGTGATCAAAAGACTTCCTTAGAAGGAACCCCTGTCTTCAGGCTCTAAAAGCA
************* **********************************************
HS_haplotype1 GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCACCCCAGCCTCCCCATCTCA
HS_assemblymutate_np1212 GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCAACCCAGCCTCCCCATCTCA
HS_haplotype2 GGTATAGAGGCTCAAGGAGATGAAGGTCAAGGACAGTGGCAACCCAGCCTCCCCATCTCA
***************************************** ******************
HS_haplotype1 TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA
HS_assemblymutate_np1212 TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA
HS_haplotype2 TCTCGAGCCGCTCCTGGGTACATATGATCATTTACAGGGTGTCTAGTTCAGAGAAACTCA
************************************************************
HS_haplotype1 TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC
HS_assemblymutate_np1212 TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC
HS_haplotype2 TTCTTCCGGATCAAAAATGATGACTATATCTCAAGGAAGTCTCAGCCCTTAGCGATTAGC
************************************************************
HS_haplotype1 CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGGTGCTTC
HS_assemblymutate_np1212 CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGTTGCTTC
HS_haplotype2 CAGGTTACTGCTCCAAGTGCAGAATCGGAGACCAGAGGGAGTCCCTGGCGCTGTTGCTTC
***************************************************** ******
HS_haplotype1 CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACGAG
HS_assemblymutate_np1212 CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACGAG
HS_haplotype2 CACTGCTCAAATCTCTTCAGCTCACAGAGGAAAAAATCCCAGGTTCAAGCTCTACACAAG
********************************************************* **
HS_haplotype1 CAAACTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCATCCCAAAGTCAAGG
HS_assemblymutate_np1212 CAAACTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCATCCCAAAGTCAAGG
HS_haplotype2 CAACCTCAAGGAAGTCCCAAGAAGAGATATGTATAATCTGCCCCCCTCCCAAAGTCAAGG
*** ***************************************** **************
HS_haplotype1 ATCGTTGCTGTGTACTTTTAGAAATAATAAAAAAGAATTAATAGCGATTTTTCTCTCTGA
HS_assemblymutate_np1212 ATCGTTGCTGTGTACTTTTAGAACTAATAAAAACGAATTGATAGCGATTTTTCTCTCTGA
HS_haplotype2 ATCGTTGCTGTGTACTTTTAGAACTAATAAAAACGAATTGATAGCGATTTTTCTCTCTTA
*********************** ********* ***** ****************** *
HS_haplotype1 GCACCTGTATTATACAGAAAGTTAATTCCCCACCTGGTTGTGTCAACAAAGCAAACAACT
HS_assemblymutate_np1212 GCACCTGTATTATACAGAAAGTTAATTCCCCACCTCGTTGTGTCAACAAAGCAAACAACT
HS_haplotype2 GCACCTGTATTATACAGAAAGTTAATTCCCCACCTCGTTGTGTCAACAAAGCAAACAACT
*********************************** ************************
HS_haplotype1 GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAAGTTGAG
HS_assemblymutate_np1212 GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAACTTGAG
HS_haplotype2 GGGCTTCCAATACCTACGGAAAACTCTGCCACCTAAGCCAAACTTTACTACAAACTTGAG
****************************************************** *****
HS_haplotype1 CCAGATGCGGGTTTCTTTTCCCTCCAATACGGTGGATGAGTGCCTCCTTGAAAGAGCCAA
HS_assemblymutate_np1212 CCAGATTCGGGTTTCTTTTCCTTCCAAAATGGTGGATGAGTGCCTCCTTGGAAGAGCCAA
HS_haplotype2 CCAGATTCGGGTTTCTTTTCCTTCCAAAATGGTGGATGAGTGCCTCCTTGGAAGAGCCAA
****** ************** ***** * ******************** *********
HS_haplotype1 CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGTAGGGACCGTATCTCAAATGCT
HS_assemblymutate_np1212 CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGTAGGGACCGTATCTCAAATGCT
HS_haplotype2 CCCAACAGCAATTCCCTGCCTGTGCTTTTTCTGGCATGGAGGGACCGTATCTCAACTGCT
************************************** **************** ****
HS_haplotype1 AATTAACTATCATTTTCAGTTACTTAGCCTATAATTTAAGTAGAAAAAGGTACAGCTCCT
HS_assemblymutate_np1212 AATTAACTATCATTTTCAGTTACTTAGCCTATAATTTAAGTAGAAAAAGGTACAGCTCAT
HS_haplotype2 AATTAACTATCATTTTCAGTTACTTAGCCTGTAATTTAAGTAGAAAAAGGTACAGCTCAT
****************************** *************************** *
HS_haplotype1 GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCATGCGGAGTAGAAAGGATCCTGCGGT
HS_assemblymutate_np1212 GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCAGGCGGAGAAGAAAGGATCCTGCGGT
HS_haplotype2 GTGTAGGGGTCACCCAGCGGCGAGATTGGTTGTCAGGCGGAGAAGAAAGGATCCTGCGGT
*********************************** ****** *****************
HS_haplotype1 CTACTGGAGTCCATACTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT
HS_assemblymutate_np1212 CTACTGGAGTCCATACTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT
HS_haplotype2 CTACTGGAGTCCATAGTAGCAGGATTGTCTGGCCGAGTCCAATGTTTTTGGAAACATAAT
*************** ********************************************
HS_haplotype1 CCTGAAAAACCCCAAGTAGAGACCACTGGGATAGTGAGCTCCTGCGCCCATTTTAGTGGT
HS_assemblymutate_np1212 CCTGAAAAACCCCAAGTAGAGACCACTGGGATAGTGAGCTCCTGCGCCCATTTAAGTGGT
HS_haplotype2 CCTGAAAAACCCCAAGTAGAGACCACTGGGTTAGTGAGCTCCTGCGCCCATTTAAGTGGT
****************************** ********************** ******
HS_haplotype1 CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA
HS_assemblymutate_np1212 CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA
HS_haplotype2 CCCTCATAAAATTACAAGGTATCGCCCAGTCTTGAATCAAACGCTAGAAGTTTGGGTGAA
************************************************************
HS_haplotype1 AGCCCTACAGTGTAGGGCAGATGCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA
HS_assemblymutate_np1212 AGCCCTACAGTGTAGGGCAGATGCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA
HS_haplotype2 AGCCCTACAGTGTAGGGCAGATTCATAGGGTCAAACCCGTCTTGAGATCATGTAATCAAA
********************** *************************************
HS_haplotype1 AGCCATATAGACCAAAAGAGCGAGATGAAGGTGGCAGGTGCTTCTGTCAGCACCACGAAA
HS_assemblymutate_np1212 AGCCATATAGACCAAAAGAGCGAGATGAAGGTGGCAGGTGCTTCTGTCAGCACCACGAAA
HS_haplotype2 AGCCATATAGACCAGAAGAGCGAGATGAAGGTGGCAGGTGCTTCTGGCAGCACCACGAAA
************** ******************************* *************
HS_haplotype1 TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA
HS_assemblymutate_np1212 TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA
HS_haplotype2 TGTGTATTAGCTCATTGCTTGTCTGTTCTTCCAATATATCATTTTTGTTTGGGGAAATTA
************************************************************
HS_haplotype1 ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA
HS_assemblymutate_np1212 ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA
HS_haplotype2 ACACACATTGCTGGGGGGAGAGGTGCCTCGGCCCTTATTTTTCCTTTCTAATTCGAGACA
************************************************************
HS_haplotype1 AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTTCAGAAAAAAACAAC
HS_assemblymutate_np1212 AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTTCAGAAAAAAACAAC
HS_haplotype2 AAACACACCTCATTGATTTCCAGGTGGGGTGTTGCCCAGCCCAGTGCAGAAAAAAACAAC
********************************************* **************
HS_haplotype1 TACCCTACTTTGAGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTGG
HS_assemblymutate_np1212 TACCCTACTTTGAGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTTG
HS_haplotype2 TACCCTACTTTGTGACTAGGTCCTGGGGCTCTTTATTAGACAATATAAATCAATATTTTG
************ ********************************************* *
HS_haplotype1 GTTTCAGGCTAAAATAGAATGGTGTTAGCAAGGCGCGTGAAATTCCTTTTGAGTCAAAAA
HS_assemblymutate_np1212 GTTTCAGGCTAAAATAGAATGGTGTTATCAAGGCGCTAGAAATTCCTTTTGAGTCAAAAA
HS_haplotype2 GTTTCAGGCTAAAATAGAATGGTGTTATCAAGGCGCTAGAAATTCCTTTTGAGTCAAAAA
*************************** ******** **********************
HS_haplotype1 ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG
HS_assemblymutate_np1212 ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG
HS_haplotype2 ATTGTCCAATGCCTCAGGGGCCACCAATAATTCCAACATCTGGGTGGGAGGTGTGGAAAG
************************************************************
HS_haplotype1 TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCCAAAAATAC
HS_assemblymutate_np1212 TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCGAAAAATAC
HS_haplotype2 TGCAACCCTGGGTCGGGAGCTCACACTTTTAAACGGAGTTATAACATGGTCGAAAAATAC
*************************************************** ********
HS_haplotype1 TTATTTCGAAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG
HS_assemblymutate_np1212 TTATTTCGGAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG
HS_haplotype2 TTATTTCGGAAAAAACATTGAATACAAAAAGAACTGGCCAGAAAACATTAAGATGCCACG
******** ***************************************************
HS_haplotype1 TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC
HS_assemblymutate_np1212 TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC
HS_haplotype2 TGAGAAGGAACCTGGGGTTTGTTCTATCTTCTAGTTTTCTAGTGAGAAAAACTGGAGTCC
************************************************************
HS_haplotype1 CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG
HS_assemblymutate_np1212 CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG
HS_haplotype2 CAGCACCCCTCCAGGTTTTCAGCCATCTCGAAACTATGTTGGGTGGCAACTCCAAATCAG
************************************************************
HS_haplotype1 GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT
HS_assemblymutate_np1212 GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT
HS_haplotype2 GAATTCCTTGCCCCAAGTCTTAAACATATTTCCAACAGACTTTTATGAATGGCTCATACT
************************************************************
HS_haplotype1 AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA
HS_assemblymutate_np1212 AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA
HS_haplotype2 AGATGCTAGCTTCAATCAGACTGGGACAGTCCAAGTCTGTTAAGCAGCCAGACGGGGGGA
************************************************************
HS_haplotype1 AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA
HS_assemblymutate_np1212 AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA
HS_haplotype2 AAAAATGGTGTGTATGGCCTCAGTGGCCCAGGTAAAGAAACTCCAGCCTGTTTATAGAAA
************************************************************
HS_haplotype1 TGTGAGTTCTGGCAGGCAACACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA
HS_assemblymutate_np1212 TGTGAGTTCTGGCAGGCAACACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA
HS_haplotype2 TGTGAGTTCTGGCAGGCACCACAACTTAGAGTGCAAAAGAGATGATCTCTCAGGCTGAGA
****************** *****************************************
HS_haplotype1 CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT
HS_assemblymutate_np1212 CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT
HS_haplotype2 CACCCTGGCAGGACCAACACACTGGCACAAAAGGGAAGGAAATTCAGCCTCCCAACTGTT
************************************************************
HS_haplotype1 GCAGTAGACGTTCCTTGCTATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG
HS_assemblymutate_np1212 GCGGTAGACGTTCCTTGCTATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG
HS_haplotype2 GCGGTAGACGTTCCTTGATATTTTTGTATAGGCACAGTGCTGAAGTACACTTTTTAAGTG
** ************** ******************************************
HS_haplotype1 ATATAATCATTGATCCTGACCCCTAATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC
HS_assemblymutate_np1212 ATATAATCATTGATCCTGACCTCTCATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC
HS_haplotype2 ATATAATCATTGATCCTGACCTCTCATATTCTTTCAACAGAGAGACCCCTTGGTGGTTTC
********************* ** ***********************************
HS_haplotype1 ACTGGGTTTAGTATCTATACACAGTCTTCTCTTCCTTACCAGTGTGGGAAGGAAAGAGGG
HS_assemblymutate_np1212 ACTAGGTTTAGTATCTATAAACAGTCTTCTCTTCCTTACCAGTATGGGAAGGAAAGAGGG
HS_haplotype2 ACTAGGTTTAGTATCTATAAACAGTCTTCTCTTCCTTACCAGTATGGGAAGGAAAGAGGG
*** *************** *********************** ****************
HS_haplotype1 AAAAAGAACACAAGATACGCACCGCAGCTATGCAATTATATAATGTATGTATATGAAAAT
HS_assemblymutate_np1212 ACAAAGAACACAAGATACGCACCGCAGCTATGCAATTATATAATGTATGTATATGAAAAT
HS_haplotype2 ACAAAGAACACAAGATACGCACCGCAGCTATGCAATTATATAATGTATGTATATGAAAAT
* **********************************************************
HS_haplotype1 ATTTTCTTCACATGCGTGAGAGTCCCAGGCTGCTTTATGTAATCTGGCGGTGTACTAGCC
HS_assemblymutate_np1212 ACTTTCTTCACATGCGTGAGAGTCCCAGGCTGCTTTATGTAATCTGGCGGTGTACTAGCC
HS_haplotype2 ACTTTCTTCACATGCGTGAGAGTCCCAGGCTGCTTTATGTAATCTGGCGGTGTACTAGCC
* **********************************************************
HS_haplotype1 AGGCATGCCTGTCCCATTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG
HS_assemblymutate_np1212 AGGCATGCCTGTCCCAGTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG
HS_haplotype2 AGGCATGCCTGTCCCAGTCCTCTTCATAAAAAATAAAGAGGAGGCAGGGCCAATTCTGGG
**************** *******************************************
HS_haplotype1 GGGGGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT
HS_assemblymutate_np1212 CGGAGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT
HS_haplotype2 CGGAGTCTCTGGAGAAACATTCCAGCAGAAGCGCGGGAGGTGTGTTCAGTGACTTATCCT
** ********************************************************
HS_haplotype1 TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG
HS_assemblymutate_np1212 TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG
HS_haplotype2 TCTAGCCTCCAATCTTAAAGAAGACTTCGATGTAGAAAAGTCTTTTCTTGTATATGTGTG
************************************************************
HS_haplotype1 CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG
HS_assemblymutate_np1212 CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG
HS_haplotype2 CCCAGGCATCAGTCATTCCAAAGAAAATGGCAGACAGAGCCCAGAGCTGAAAAATACCTG
************************************************************
HS_haplotype1 TAAGTTGATCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGCTCACAGAGGTGTGTT
HS_assemblymutate_np1212 TAAGTTGACCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGATCACAGAGGTGTGTT
HS_haplotype2 TAAGTTGACCAAGGGGAGCACTTGCCATCTAGCCCTGCGAAGAGATCACAGAGGTGTGTT
******** *********************************** ***************
HS_haplotype1 TTTTTCTAGCTAAAATGCAGTATCCAAGATATTTTTGAATGGAGGTGTTACAATTGTAAC
HS_assemblymutate_np1212 TTTTTCTAGCTAAAATGCAGTATCCAAGATATTTTTGAATGGAGGTGTTACAATTGTAAC
HS_haplotype2 TTTTTCTAGCTAAAATGCAGTATCCAAGATATTTTTGAATGGAGGTGTTACAATTGTAAC
************************************************************
HS_haplotype1 TCATTGTTTCAGTGGAGAGGCGCCACTACTGGCTCCGTCCCTCCCGTCCTCACGACTTAA
HS_assemblymutate_np1212 TCATTGTTTCAGTGGAGAGGCGCCACTAATGGCTCCGTCCCTCCCGTCCTCACGACTTAA
HS_haplotype2 TCATTGTTTCAGTGGAGAGGCGCCACTAATGGCTCCGTCCCTCCCGTCCTCACGACTTAA
**************************** *******************************
HS_haplotype1 ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA
HS_assemblymutate_np1212 ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA
HS_haplotype2 ATGGTGTAATATGAGGCGTGCCTGGCAGCCTGGGGTGGTGGTGAGTTTGCATAAAAGCTA
************************************************************
HS_haplotype1 TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT
HS_assemblymutate_np1212 TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT
HS_haplotype2 TTAACTTGGCCACACCCAGGGGGCACCTGTTGTTGCACATTCTCAGCCCTTTGCTTTCCT
************************************************************
HS_haplotype1 GCGATTCCACAGGGTTCCAATGTTTCTCAGACGCCAACTTGTCACTCTCAAAAGAGGTTC
HS_assemblymutate_np1212 GCGATTCCACAGGGTTCCAATGTTTCTCAGACGCCAACTTGTCACTCTCAAAAGAGGTTC
HS_haplotype2 GCGATTCCACAGGATTCCAATGTTTCTCAGATGCCATCTTGTCACTCTCAAAAGAGGTTC
************* ***************** **** ***********************
HS_haplotype1 CTGCTGGATGAGACCCATATATAAGTACAATATAAACAGTACCTGGCCTGAGGATCCAAG
HS_assemblymutate_np1212 CTGCTGGATGAGACCCATATATAAGTACAATATAACCAGTACCTGGCCTGAGGATCCAAG
HS_haplotype2 CTGCTGGATGAGACCCATATATAAGTACAATATAACCAGTACCTGGCCTGAGGATCCAAG
*********************************** ************************
HS_haplotype1 CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCGAT
HS_assemblymutate_np1212 CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCAAT
HS_haplotype2 CGCTGCGTGCTCAGGGTGTGGACAGACTCACTCATATGATACTGAGGTAGCTAGGTCAAT
********************************************************* **
HS_haplotype1 TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA
HS_assemblymutate_np1212 TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA
HS_haplotype2 TCCAGGCTACAGAGGCCTTTTATAAGCCACTTAAATGCACTGTTTGAGCTAGACCTCCCA
************************************************************
HS_haplotype1 CCCCTGCTACTTGAATCAGACGGTGCGCCTGTCTCAGGGGCTATTAGTCATGGCCGGGCC
HS_assemblymutate_np1212 CCCCTGCTACTTCAATCAGACGGTGCGCCTGTCTCAGGGGCTATAAGTCATGGCCGGGCC
HS_haplotype2 CCCCTGCTACTTCAATCAGACGGTGCGCCTGTCTCAGGGGCTATAAGTCATGGCCGGGCC
************ ******************************* ***************
HS_haplotype1 AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCA
HS_assemblymutate_np1212 AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCC
HS_haplotype2 AGGAGTGCAAGAGCTGCAGCTCTCTCCAGAATTTTATTGTTTTCAATGAAACAAAACCCC
***********************************************************
HS_haplotype1 GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCAAATCCTCCACCCGTTGGAG
HS_assemblymutate_np1212 GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCCAATCCTCCCCCAGTTGGAG
HS_haplotype2 GATTAACCTTGAAGTTGTGTTCGCCCCAGGGACTATTTTCCAATCCTCCCCCAGTTGGAG
**************************************** ******** ** *******
HS_haplotype1 CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT
HS_assemblymutate_np1212 CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT
HS_haplotype2 CTCCACCGTGCCGTCTCGTTGAGCCAGACTGTTCAGAGTTCTAGCTTCTACCTGCAGAGT
************************************************************
HS_haplotype1 ACACATAACACCAGCTTCTGTTGTCACAAAAACGATGCCTAAATAAGTGCTTAGACTGGT
HS_assemblymutate_np1212 ACACATAACACCAGCTTCTGTTGTCACCAAAACGATGCCGAAATAAGTGCTTAGACTGGT
HS_haplotype2 ACACATAACACCAGCTTCTGTTGTCACCAAAACGATGCCGAAATAAGTGCTTAGACTGGT
*************************** *********** ********************
HS_haplotype1 GGACGAGAGGTATTTCAACCGAGAGTCTCACTAAAAAAACTATATAGAGACCCCGCCAGT
HS_assemblymutate_np1212 GGACTAGAGGTATTTCAACCTAGAGTCTCACTAAAAAAACTATATAGAGACCCCGTCAGT
HS_haplotype2 GGACTAGAGGTATTTCAACCTAGAGTCTCACTAAAAAAACTATATAGAGACCCCGTCAGT
**** *************** ********************************** ****
HS_haplotype1 CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCAGATAAGCA
HS_assemblymutate_np1212 CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCACATAAGCA
HS_haplotype2 CCAGACCATCTCTACTTAAAACAAGCAGTGAGTAAAAATAAATGTTTTTTCACATAAGCA
**************************************************** *******
HS_haplotype1 CTCTCACAGGAGAGCCGGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG
HS_assemblymutate_np1212 CTCACACAGGAGAGCCGGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG
HS_haplotype2 CTCACACAGGAGAGCCAGAAATGCACGACATCCTTACGGTGAGCCGAGCTGAGTGCTGTG
*** ************ *******************************************
HS_haplotype1 TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAAGATATTAAGTTTGGAAGGCTCAGACTCC
HS_assemblymutate_np1212 TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAAGATATTAAGTTTGGAAGGCTCAGACTCC
HS_haplotype2 TAAGGTCATTAGTCAAAGGAAGAAAGCCTGAACATATTAAGTTTGGAAGGCTCAGACTCC
******************************** ***************************
HS_haplotype1 TGGGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA
HS_assemblymutate_np1212 TGGGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA
HS_haplotype2 TGTGAGGGGAATGTCCAGAGTAGGAATGCACGGAGCGGCCGGCTTCAGTCTCCACAGAGA
** *********************************************************
HS_haplotype1 TGTGGCTTTTTAAAGCCAGAAGACCCAGGCTCACAGAGATGAGGCTGAGCCTGACAGGCG
HS_assemblymutate_np1212 TGTGGCTTTTTAAAGCCAGAAGACCCAGGCTCACAGAGATGAGGCTGAGCCTGCCAGGCG
HS_haplotype2 TGTGGCTTTTTAAGGCCAGAAGACCCAGGCTCACAGAGATGAGGCTGAGCCTGCCAGGCG
************* *************************************** ******
HS_haplotype1 AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGAGTGTTACCCTTCCCTTGATTATAGT
HS_assemblymutate_np1212 AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGATTGTTACCCTTCCCTTGATTATAGT
HS_haplotype2 AAGCCCCAGCCACTGGGTGGGTGCTGTCCCTCAGATTGTTACCCTTCCCTTGATTATAGT
*********************************** ************************
HS_haplotype1 AAATTAAAAAAGTGCTCCTCCCGGCTCTAAATAGGTACTTCTGGATGGGAGGCTCACCTG
HS_assemblymutate_np1212 AAATTAAAAAAGTGCTCCTCCCGGCTCTAAATAGGTACTTCTGGATGGGAGGCTCACCTG
HS_haplotype2 AAATTAAAAAAGTGCTCCTCCCGGCTCTAGATAGGTACTTCTGGATGGGAGGCTCACCTG
***************************** ******************************
HS_haplotype1 CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA
HS_assemblymutate_np1212 CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA
HS_haplotype2 CCACTGTTTTTTCTGAGGCTTCCGTGAACCGGGTTCACCATCTATAGAGCTTCATCAGGA
************************************************************
HS_haplotype1 TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTAGAATTGAACTAAATGGTACGCAT
HS_assemblymutate_np1212 TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTAGAATTGAACTAAATGGTACGCAT
HS_haplotype2 TATTTTTATGGGATGTAAACAGAATGAGGAATAGGTGGAATTGAACTAAATGGTACACAT
************************************ ******************* ***
HS_haplotype1 TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC
HS_assemblymutate_np1212 TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC
HS_haplotype2 TAATGATGTGGTCCCCCACCACATAACAATGGGCTTCTGTCTCAGGCTCTACAGGAGTGC
************************************************************
HS_haplotype1 TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC
HS_assemblymutate_np1212 TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC
HS_haplotype2 TGTAATATAATTTTCTTCCAGCTCCCGGGGTGTCATGTAATCCTCATGCGGATCCCACTC
************************************************************
HS_haplotype1 CAGGAGGGGCTCCAGCTCACTTTTTTAGTGGGACTCCACAAGCGAGAATAAATGCTGGAA
HS_assemblymutate_np1212 CAGGAGGGGCTCCAGCTCACTTTTTTAGTGGGACTCCACAAGAGAGAATAAATGCTGGAA
HS_haplotype2 CAGGAGGGGTTCCAGCACACTTTTTTAGTGGCACTCCACAAGAGAGAATAAATGCTGGAA
********* ****** ************** ********** *****************
HS_haplotype1 AGGGCGTGGCTGAATCTAAGAGCCTTACAAAACAACCTGACAGGGGCTTCCCTTCCTGGC
HS_assemblymutate_np1212 AGGGCGTGACTGAATCTAAGAGCCTTACATAACAACCTGACAGGGGCTTCCCTTCCTGGC
HS_haplotype2 AGGGCGTGACTGAATCTAAGAGCCTTACATAACAACCTGACAGGGGCTTCCCTTCCTGGC
******** ******************** ******************************
HS_haplotype1 ACAACTATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA
HS_assemblymutate_np1212 ACAACTATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA
HS_haplotype2 ACAAATATAATTTTAATGAAACACAAACATATGTTTACATCAAAAGATATCCTGCCAATA
**** *******************************************************
HS_haplotype1 CAAAATAGTAGCCTGGATCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG
HS_assemblymutate_np1212 CAAAATAGTAGCCTGGCTCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG
HS_haplotype2 CAAAATAGTAGCCTGGCTCTCAACTAAATCCAGGGCCATGCTCTACTAATTGAGGCAACG
**************** *******************************************
HS_haplotype1 CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAAGAATATGCATTAGAGCGACTC
HS_assemblymutate_np1212 CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAGGAATATGCATTAGAGCGACTC
HS_haplotype2 CATGAATTCATAGTCAAGTCAGATAATGGTTTGAATAAGGAATATGCATTAGAGCGACTC
************************************** *********************
HS_haplotype1 TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG
HS_assemblymutate_np1212 TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG
HS_haplotype2 TTAAGATTACGCTTTGAAAGGGCCCAGGTTTAAACTGTAATTACATTCAAAAAATAAAAG
************************************************************
HS_haplotype1 GGTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCCACCCCACT
HS_assemblymutate_np1212 GTTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCTACCCCACT
HS_haplotype2 GTTTATTTTATTCATATCCTCAGCTAATGATCACATGTCCACCTTTGGTTCTACCCCACT
* ************************************************* ********
HS_haplotype1 TGTAAGAGCGGCCTCCCACCTTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA
HS_assemblymutate_np1212 TGTAAGAGCGGCCTCCCACCGTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA
HS_haplotype2 TGTAAGAGCGGCCTCCCACCGTAGGGATGGTGACACATGAGGGGAAATCATATATTTTAA
******************** ***************************************
HS_haplotype1 AACCCGGGCTTCCCTCCTCCCCCACGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA
HS_assemblymutate_np1212 AACCCGGGCTTCCCTCCTCCCCCAGGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA
HS_haplotype2 AACCCGGGCTTCCCTCCTCCCCCAGGCCGGCTTTTTGTGGAACCTTGCCTGGCAGCTCTA
************************ ***********************************
HS_haplotype1 AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAAATAAATAAATATAATAGAA
HS_assemblymutate_np1212 AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAGAAAAAGAAATATAATAGAA
HS_haplotype2 AATGCACCTGCACATGCCTCCTCCTAGATCATTTTTTTTAGAAAAAGAAATATAATAGAA
**************************************** * *** *************
HS_haplotype1 AAACAATAAGATATTATGTTATGAACTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT
HS_assemblymutate_np1212 AAACAATAAGATATTATTTTATGAGCTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT
HS_haplotype2 AAACAATAAGATATTATTTTATGAGCTGGGGAAACTCCTGTAAATAAGCCAGGAGTCTAT
***************** ****** ***********************************
HS_haplotype1 GGCAAGCACTTTGGTCCCACCCCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA
HS_assemblymutate_np1212 GGCAACCACTTTGGTCCCACCGCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA
HS_haplotype2 GGCAACCACTTTGGTCCCACCGCAGTCTTATTAAATTAGTGGACAGAAGATTCGGCAACA
***** *************** **************************************
HS_haplotype1 ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAACTGTGATCTAGACA
HS_assemblymutate_np1212 ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAACTGTGATCTAGACA
HS_haplotype2 ACACTGTAATATCACGCAAATAAAACATTATTGAGCGAGACAGAAAATGTGATCTAGACA
********************************************** *************
HS_haplotype1 GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG
HS_assemblymutate_np1212 GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG
HS_haplotype2 GTGATGAGGGCGGCTCAGGTGAAGAACTTTCCGCCCCAGCACGAGACTCTGGTGGAATCG
************************************************************
HS_haplotype1 CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA
HS_assemblymutate_np1212 CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA
HS_haplotype2 CTCTGGAGAAACTTTCGAAGAATGCTGCACACCAGACAGGAAGCTGCCTCAGACACACAA
************************************************************
HS_haplotype1 ACAACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC
HS_assemblymutate_np1212 ACCACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC
HS_haplotype2 ACCACAAACCTTCGCAACAATATTAACCCAGATTCTTTTTATTATATTGAGACTTGAGAC
** *********************************************************
HS_haplotype1 TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCATCTGTTTTCATAAATAAATGGCTA
HS_assemblymutate_np1212 TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCATCTGTTTTCATAAATAAATGGCTA
HS_haplotype2 TGCAAAGCAAGTGCCCTCTTCATTAGGGAATTTCCACCTGTTTTCATAAATAAATGGCTA
************************************ ***********************
HS_haplotype1 CTATGAGACCACCTCACGCGATTGCAGGAGTTCTTTTGTTCAGGAGACCAGTACAGAGAT
HS_assemblymutate_np1212 CTATGAGACCACCTCACGCGATTGCAGGAGTTCTTTTGTTCAGGAGACCAGTACAGAGAT
HS_haplotype2 CTATGAGACCACCTCAGGCGATTGCAGGAGATCCTTTGTTCAGGAGACCAGTACAGAGAT
**************** ************* ** **************************
HS_haplotype1 TTCTCAGTTTATCTACCCTCTATACCACAAAGGAAGCCTCAGAGTAGGGGGTTAAATGCA
HS_assemblymutate_np1212 TTCTCAGTTTATCTACCCTCTATACCACAAAGGAAGCCTCAGAGTAGGGGGTTAAATGCA
HS_haplotype2 TTCTCAGTTTATCTACCCTCTATACCAAAAAGGAAGCGTCAGAGTAGGGGGTTAAATGCA
*************************** ********* **********************
HS_haplotype1 CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGAGAAGCTGGTA
HS_assemblymutate_np1212 CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGAGAAGCTGGTA
HS_haplotype2 CAGGCACCAAGAATTCTTGACAGAGAGGGTGGATATCCAAGATTCATTGGGAAGCTGGTA
************************************************* **********
HS_haplotype1 TGGTCGGTTCATACCTTTCCCTGGGGCTCGCAATGTCAGTCACTGGGAAATCCCAAATGT
HS_assemblymutate_np1212 TGGTCGGTTCATACCTTTCCCTGGGGCTCGCAATGTCAGTCACTGGGAAATCCCAAATGT
HS_haplotype2 TGGTCGGTTCATACCTTTCCCTGGGGCTCCCAATGTCAGTCACTGGGAAATCCCAAATGT
***************************** ******************************
HS_haplotype1 CATTTGAGATAAGTGGCTGGTAGATGTATGTATATACACCATCACGGTTGGCAGAAAATT
HS_assemblymutate_np1212 CATTTGAGATAAGTGGCTGGTAGATAGATGTATATACACCATCACGGTTGGCAGAAAATT
HS_haplotype2 CATTTGAGATAAGTGGCTGGTAGATAGATGTATATACACCATCACGGTTGGCAGAAAATT
************************* *********************************
HS_haplotype1 TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG
HS_assemblymutate_np1212 TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG
HS_haplotype2 TCACTAGTTCAGAAAACAGTGGGGCTGTGGAATACTCTCAAAGAATCAGCAGTGAGGGAG
************************************************************
HS_haplotype1 CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTAGAGGAGTTCAA
HS_assemblymutate_np1212 CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTACAGGAGTTCAA
HS_haplotype2 CATACTTCACTTACTGAACCAAAGAAAAATTCCGGGCCGGGTTTGAGTACAGGAGTTCAA
************************************************* **********
HS_haplotype1 GCCCCATTTATTAATGCCTGGGCTCTGTCTGGAGGCGCAAAACAAAATCACTCCATTCAG
HS_assemblymutate_np1212 GCCCCATTTATTAATGCCTGGGCTCTGTCTGGCGGCGCAAAACAAAATCACTCCATTCAG
HS_haplotype2 GCCCCATTTATTAATGCCTGGGCTCTGTCTGGCGGCGCAAAACAAAATCACTCCATTCTG
******************************** ************************* *
HS_haplotype1 ACGATCATTGAAATACAGGCGGCACACAGCTTTATAAAAACTCTACTTTTAGCCGAAGCC
HS_assemblymutate_np1212 ACGATCATTGAAATACAGGCGGCACACAGCTTTATAAAAACTCTACTTTTAGCCGAAGCC
HS_haplotype2 ACGATCATTGAAATACAGGCGGCACACAGCTTTCTAAAAACTCTACTTTTAGCCGAGGCC
********************************* ********************** ***
HS_haplotype1 CCGCTGTTGTTTTGCTACAAAGAATTTATTCAAGACTGTGTTGGATTACAAAGAGGCTGC
HS_assemblymutate_np1212 CCGCTGTTGTTTTGCTACAAAGAATTTATTCAAGACTGTGTTGGATTACAAAGAGGCTGC
HS_haplotype2 CCGCAGTTGTTTTGCTAAAAAGAATTTATTCAAGGCTGTGTTGGATTACAAAGAGGCTGC
**** ************ **************** *************************
HS_haplotype1 CACACAAGTGGCTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG
HS_assemblymutate_np1212 CACACAAGTGGCTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG
HS_haplotype2 CACACAAGTGACTTTTCATTATACTTGACAATGAGGGACTATTTAGGTCAGGGACAGGTG
********** *************************************************
HS_haplotype1 GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATCGATCACTACTACAGTAAGCAGCGTAA
HS_assemblymutate_np1212 GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATCGATCACTACTACAGTAAGCAGCGTAA
HS_haplotype2 GATGGAAGTGCAGTTTTCTTTCTTTTCTGGTATTGATCACTACTACAGTAAGCAGCGTAA
********************************* **************************
HS_haplotype1 GTAACTCCCAGGCCTCCCTGAAGAAAGTTCAATTTTAGAGAGTCTCGGTCAAGCAGATGG
HS_assemblymutate_np1212 GTAACTCCCAGGCCTCCCTGAAGAAAGATCACTTTTAGAGAGTCTCGGTCAAGCAGATGG
HS_haplotype2 GTAACTCCCAGGCCTCCCTGAAGAAAGATCACTTTTAGAGAGTCTCGGTCAAGCAGATGG
*************************** *** ****************************
HS_haplotype1 GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT
HS_assemblymutate_np1212 GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT
HS_haplotype2 GCCTCATGTGTCAGGCCAACACGTAGCTGGTAAAGATTAAGGCTCAGGTGGCATTCAGCT
************************************************************
HS_haplotype1 GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC
HS_assemblymutate_np1212 GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC
HS_haplotype2 GAAATTATTAATCCACAATTTTCAGGGCCCCCATACTTTGCAGCCATTGAGAATCGTCAC
************************************************************
HS_haplotype1 ATGTAGGAGACCAGATCACATCGACAATGAATTATTTCATAAAACTCCAGCTAGTAGTCA
HS_assemblymutate_np1212 CTGTAGGAGACCAGATCACATCCACAATGAATTATTTCATAAAACTCCAGCTTGTAGTCA
HS_haplotype2 CTGTAGGAGACCAGATCACATCCACAATGAATTATTTCATAAAACTCCAGCTTGTAGTCA
********************* ***************************** *******
HS_haplotype1 TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTGGGTTTTCTCACTGAATCTGA
HS_assemblymutate_np1212 TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTGGGTTTTCTCACTGAATCTGA
HS_haplotype2 TCTGGCTATAATGAATTTGGTTTTCTTTCTGGAGAGCTTCGGTTTTCTCACTGAATCTGA
*************************************** ********************
HS_haplotype1 TTTGGATCGCTGGGTTCGTGCTGATGAGAGAGAATCAACATGTCTGCCACATTCATCCTC
HS_assemblymutate_np1212 TTTGGATCGCTGGGTTCGTGCTGATGAGAGAGAATCAACATGTCTGCCACATTCATCCTC
HS_haplotype2 TTTGGATCGCTGGGTTCGTGCTGATGACAGAGAATCAACATGTCTGCCACATTCATCCTC
*************************** ********************************
HS_haplotype1 AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAATCACCTTGC
HS_assemblymutate_np1212 AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAATCACCTTGC
HS_haplotype2 AGCTGCTTAGGGAATTTATTTGGTAGATTTCTGGGATGCCTCCCCACGAAACCACCTTGC
*************************************************** ********
HS_haplotype1 CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAAAGTGGCACAATGTTTG
HS_assemblymutate_np1212 CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAAAGTGGCACAATGTTTG
HS_haplotype2 CAACTTCCCACCTTAAGCACAGGACATTGACTCGGCACAGAAAAAGTGGCACAATGTTTG
************************************************************
HS_haplotype1 AACCCATATTTTCTTTCTTCATGTTGTAGTGATTCTAATGTCCACGACTCACTCCAGGCA
HS_assemblymutate_np1212 AACCCATATTTTCTTTCTTCATGTTGTAGTGATTCTAATGTCCACGACTCACTCCAGGCA
HS_haplotype2 AACCCATATCTTCTTTCTTCATGTTGTAGTGATTCTAATGTCCACGACTCACTCCAGGCA
********* **************************************************
HS_haplotype1 GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC
HS_assemblymutate_np1212 GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC
HS_haplotype2 GGTGCAACAAGTTAAGTAGCTCTGCAGTAAGATTAAGATAGACTGTAATCCTTGCGCAGC
************************************************************
HS_haplotype1 CAAGATTATTTCCATAGAATTGGCTAGAAAAGAGGATCTAGATAGTAAGTTGTCAATGAT
HS_assemblymutate_np1212 CAAGATTATTTCCATAGAATTGGTTAGAAAAGAGGATCTAGATAGTATGTTGTCAATGAT
HS_haplotype2 CAAGATTATTTCCATAGAATTGGTTAGAAAAGAGGATCTAGATAGTATGTTGTCAATGAT
*********************** *********************** ************
HS_haplotype1 GAACCTGTCAAGTGCTAATCCTGCGTGTGTGTTTTGTTATGGAAGATGGATAAGTGATTT
HS_assemblymutate_np1212 GAACCTGTCAAGTGCTAATCCTGCTTGTGTGTTTTGTTATGGAAGATGGATAAGTGATTT
HS_haplotype2 GAACCTGTCAAGTGCTAATCCTGCTTGTGTGTTTTGTTATGGAAGATGGATAAGTGATTT
************************ ***********************************
HS_haplotype1 GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT
HS_assemblymutate_np1212 GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT
HS_haplotype2 GACATTGGGAAAGGAGATCACTTTGTGTCCTTCCTGAAGCTACTCTGGGGGTTGTTGAAT
************************************************************
HS_haplotype1 CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAGGTTAGAGAATGAACAGGTGCCTGGAT
HS_assemblymutate_np1212 CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAGGTTAGAGAATGAACAGGTGCCTGGAT
HS_haplotype2 CTGTCTCTGTCTCTACCTGGGCTCAGGAGTCTAAGTTACAGAATGAACAGGTGCCTGGAT
********************************* **** *********************
HS_haplotype1 TACTGTCCAAAGCTTCTTAGATGGAACTGGGATCTCAGCAGAAAAATGTGCTAAGATTCA
HS_assemblymutate_np1212 TACTGTCCAAAGCTTCTTAGATGGAACTGGGATCTCAGCAGAAAAATGTGCTAAGATTCA
HS_haplotype2 TACTGTCCAAAGCTTCTGAGATGGAAATGGGAGCTCAGCAGAAAAATGTGCTAAGATTCA
***************** ******** ***** ***************************
HS_haplotype1 TCCAGTTATTGAAAATTATTTCTCTGTCTCGAAGGGATTGCTGGGGACTGCAGTTTTTTG
HS_assemblymutate_np1212 TCCAGTTATTGAAAATTATTTCTCTGTCTCGAAGGGATTGCTGGGAACTGCAGTTTTTTG
HS_haplotype2 TCCAGTTATTGAAAATTATTTCTCTGTCTCGAAGGGATTGCTGGGAACTGCAGTTTTTTG
********************************************* **************
HS_haplotype1 GCTGGCCACTTTCCCTATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT
HS_assemblymutate_np1212 GCTGGCCACTTTCCCGATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT
HS_haplotype2 GCTGGCCACTTTCCCGATCAATCAGGCCGCGTGGGCTTGTGTCTCAATCTTAACATATGT
*************** ********************************************
HS_haplotype1 AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG
HS_assemblymutate_np1212 AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG
HS_haplotype2 AACGAAACGAAGACATTTACGACCAATGTGTTGGTAAAAATTTTATCGTAACTGACTTGG
************************************************************
HS_haplotype1 CCATTCCAGCTTATCTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC
HS_assemblymutate_np1212 CCATTCCAGCTTATTTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC
HS_haplotype2 CCATTCCAGCTTATTTCCTCCCTAGGGAGTCAAGAGAAGTTTTGTACAAAGCCACTCCGC
************** *********************************************
HS_haplotype1 AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGCAAATTCCTGCTTGGGAGGGAGGCC
HS_assemblymutate_np1212 AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGTAAATGCCTGCTTGGGAGGGAGGCC
HS_haplotype2 AGCTAGATGGCCTTCTTACATTCAATGCTGTCATGTAAATGCCTGCTTGGGAGGGAGGCC
*********************************** **** *******************
HS_haplotype1 GAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG
HS_assemblymutate_np1212 GAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG
HS_haplotype2 GAAAGTAATCCAGCTCACGACCTCTCACTGTTCTTCTGATTACAGAGTGCTTCCCCGGGG
************************************************************
HS_haplotype1 GATTAGGGATGTAATGAGCCGTAGTAAAATGATTCTCTCGAACAGTCTGGCCCACCAATA
HS_assemblymutate_np1212 GATTAGGGATGTAATGAGCCATAGTAAAATGATTGTCTCGAACAGTCTGGCCCACCAATA
HS_haplotype2 GATTAGGGATGTAATGAGCCATAGTAAAATGATTGTCTCGAACAGTCTGGCCCACCAATA
******************** ************* *************************
HS_haplotype1 TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA
HS_assemblymutate_np1212 TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA
HS_haplotype2 TGTTTGTTAGAACCAATGTAATCTGGGGGCCCTTGGTTGATCTCAGGTTGTGATTTTTGA
************************************************************
HS_haplotype1 AAGATCGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA
HS_assemblymutate_np1212 AAGATGGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA
HS_haplotype2 AAGATGGGCGGCCGAGATGTGTGTACCCAGCCACCACACTTTTCACTATACAATCACCTA
***** ******************************************************
HS_haplotype1 TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA
HS_assemblymutate_np1212 TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA
HS_haplotype2 TATGAAGGTATCGGAATTTCAATACTTACAGAATGCCAAGTGTTTTCTAAAAAACAAACA
************************************************************
HS_haplotype1 ATAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGAGTTCCAAC
HS_assemblymutate_np1212 AAAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGAGTTCCAAC
HS_haplotype2 AAAAGACTTGTTTATCCCACGGGAGTTGTGCCACCCAGGAGGCTCACAGGGAGTTCCAAC
* **********************************************************
HS_haplotype1 AACATGCTGTGTATTTCAGACAATGCAGTTTGTTATGCAATGAGGAAGGGAGGAAACCAC
HS_assemblymutate_np1212 AACATGCTGTGTATTTCAGACAATGCAGTTTGTTATGCAATGAGGAAGGGAGGAAACCAC
HS_haplotype2 AACATGCTGTGTATTTCAGACAATGCAGTTAGTTATGCAATGAGGGAGGGAGGAAACCAC
****************************** ************** **************
HS_haplotype1 TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTGAGGATGGAAATTTATT
HS_assemblymutate_np1212 TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTGAGGATGGAAATTTATT
HS_haplotype2 TTAAAAAGTTAGGAGTTGCCCCGTCTGAGCCACTTTATTGTTTTAGGATGGAAATTTATT
******************************************* ****************
HS_haplotype1 TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA
HS_assemblymutate_np1212 TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA
HS_haplotype2 TGCTTGCAGTGGCTTAAAACCAGCCCCGGCCAGCATCCCATGTTTGCAAAACCTCTTTAA
************************************************************
HS_haplotype1 AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT
HS_assemblymutate_np1212 AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT
HS_haplotype2 AGTATAGCTGGGCCAGGCGCCTCCACCGTTGTAAATAAAGTTGAAGAGTAAATAATGGGT
************************************************************
HS_haplotype1 GGGCTCATTCAATATAGAGATTCTATCTGGGGAACTTTCCATTTGTGTGTCTCAGGAGGA
HS_assemblymutate_np1212 GGGCTCATTCAATATAGAGATTCTATCTGGGGAACTTTCTATTTGTGTGTCTCAGGAGGA
HS_haplotype2 GGGCTCATTCAATATAGAGATTCTATCTGGGGAACTTTCTATTTGTGTGTCTCAGGAGGA
*************************************** ********************
HS_haplotype1 TTAGCAAGGAATGGATGATGTAAGGTTTCTCCCGTTTCTCTGTCACCGAGGTTTCAACCC
HS_assemblymutate_np1212 TTAGCCAGGAAGGGATGATGTAAGGTTTCTCCCTTTTCTCTGTCACCGAGGTTTCAACCC
HS_haplotype2 TTAGCCAGGAAGGGATGATGTAAGGTTTCTCCCTTTTCTCTGTCACCGAGGTTTCAACCC
***** ***** ********************* **************************
HS_haplotype1 AGACACTACCCTATGCTGCACATTCTTCATCGGCTCAGACAGCTAATGAGAAGAATAAGT
HS_assemblymutate_np1212 AGACACTACCCTAGGCTGCACATTCTTCATCGGCTCAGGCAGCTAATGAGAAGAATAAGT
HS_haplotype2 AGACACTACCCTAGGCTGCACATTCTTCATCGGCTCAGGCAGCTAATGAGAAGAATAAGT
************* ************************ *********************
HS_haplotype1 TAAGTGAGAATATCTTTAAAACACAGCGTGCCACATTAAAAAATGCCATTCATAGTGTGG
HS_assemblymutate_np1212 TAAGTGAGAATATCTTTAAAACACAGCGTGCCACCTTAAAAAATGCCATTCATAGTGTGG
HS_haplotype2 TAAGTGAGAATATCTTTAAAACACAGCGTGCCACCTTAAAAAATGCCATTCATAGTGTGG
********************************** *************************
HS_haplotype1 AAGGTCCCGCCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGATTGGCT
HS_assemblymutate_np1212 AAGGTCCCGCCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGATTGGCT
HS_haplotype2 AAGGTCCCGTCGCCTGTGGAAGTTTATTCTGTCTCAAAACTACCTGTAATCTGCTTGGCT
********* ******************************************* ******
HS_haplotype1 GGGCTGCTCACACCAAGTGCAGAAACAGCACCTCAGCAACTTTAGGGGAGCCAATACTAA
HS_assemblymutate_np1212 GGGCTGCTCACACCAAGTGCAGAAACAGCACCTCAGCAACTTTAGGGGAGCCAATACTAA
HS_haplotype2 GGGCTGCTCACACCAAGTGCAGAAACAGCACCTCAGCAACTTTAGGGGAGTCAATACTAA
************************************************** *********
HS_haplotype1 TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGAATGCCACCGTGCTGTAC
HS_assemblymutate_np1212 TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGAATGCCACCGTGCTGTAC
HS_haplotype2 TATCTGGCTTAAAATAAAGTTACAGCCTGAGAAATATCTTAGACTGCCACCGTGCTGTAC
******************************************* ****************
HS_haplotype1 TCATCCAGGAATTAGGTACTGGCCAGCCTCAGAAGCTCTGCAGTGCCCTGCCTTTAACCA
HS_assemblymutate_np1212 TCATCCAGGAATTAGGTACTGGCCAGCCTCAGAAGCTCTGCAGTGCCCTGCCTTTAACCA
HS_haplotype2 TCATCCAGGAATTAGGCACTGACCAGCCTCAGAAGCTCTGCAGTGCCCTGCCTTTAACCA
**************** **** **************************************
HS_haplotype1 GGGAGGGAGAAAAATAGAAGGCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG
HS_assemblymutate_np1212 GGGAGGGAGAAAAATAGAAGCCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG
HS_haplotype2 GGGAGGGAGAAAAATAGAAGCCTCCCCAGGTTGTCTCCCCCCACCAGGCTTAAGGAACAG
******************** ***************************************
HS_haplotype1 TCGACTGGGGCAACAATTGAATGGGGCGGGAGGTATAACACCACTGGGGAGGCGAGGTCC
HS_assemblymutate_np1212 TCGACTGGGGCAACAATTGAATGGGGCCGGAGGTTTAACACCACTGGGGAGGCGAGGTCC
HS_haplotype2 TCGACTGGGGCAACAATTGAATGGGGCCGGAGGTTTAACACCACTGGGGAGGCGAGGTCC
*************************** ****** *************************
HS_haplotype1 GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGACCTTTCT
HS_assemblymutate_np1212 GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGCCCTTTCT
HS_haplotype2 GACCCCTCCTCACTTGAAACCATCCCCTGCTGGGCTCATATACATGGTGGAGCCCTTTCT
**************************************************** *******
HS_haplotype1 TTGAAAACATGAGTTTGATTCTCTCACTGAGATCTGCAAGAGGAGACGGTTCTTTTCAAT
HS_assemblymutate_np1212 TTGAATACATGAGTTTGATTCTCTCACTGAGATCTGCAAGAGGAGACGGTTCTTTTCAAT
HS_haplotype2 TTGAATACATGAGTTTGATTCTCTCACTGAGATCTGCAAGAGGAGACGGTTCTTTTCAAT
***** ******************************************************
HS_haplotype1 TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA
HS_assemblymutate_np1212 TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA
HS_haplotype2 TAAAGCCCTCTCTTTGCATACCAGGCATGGCAGGCAAGTCCCTCCTAAAATGACTTGAGA
************************************************************
HS_haplotype1 GGAGAGGGCAGAGGAGAAATCTATTTATTTTCCTGGTGGCTAAGAAGGACAGCACCAACC
HS_assemblymutate_np1212 GGAGAGGGCAGAGGAGAAATCTATTTATTATCCTGGTGGCTAAGAAGGACAGCACCAACC
HS_haplotype2 GGAGAGGGCAGAGGAGAAATCTATTTATTATCCTGGTGGCTCAGAAAGACAGCACCAACC
***************************** *********** **** *************
HS_haplotype1 ATCTTAGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG
HS_assemblymutate_np1212 ATCTTAGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG
HS_haplotype2 ATCTTAGCAGTGGAGTATTCACATTTATATGGCTACTTTAGTGCAAAAAAGTTACACCGG
************************************************************
HS_haplotype1 AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA
HS_assemblymutate_np1212 AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA
HS_haplotype2 AGGCTGGACCTAAGGGCAAGTGAGCATCTGAATGCTGTCCGTTATACAGGCACTTAAAGA
************************************************************
HS_haplotype1 CTAGGAAGGTAGAATAGTGTTGGGCACCATTTGCATTGTCCCTAGGAAGAACATGTTGCA
HS_assemblymutate_np1212 CTAGGAAGGTAGAATAGTGTTGGGCACCATTTGCATTGTCCCTAGGAAGAACATGTTGCA
HS_haplotype2 CTAGGAAGGTAGAATAGTGTTGGGCACCATTTGCATTGTCCCTAGGAAGAACATGTTGCA
************************************************************
HS_haplotype1 TTTTTAACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG
HS_assemblymutate_np1212 TTTTTAACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG
HS_haplotype2 TTTTTAACCTTTTAAAAAAACAAGTATTAGCAATTCACATAAAAGTCACCCCATGCTGGG
************************************************************
HS_haplotype1 GAGCTCACATATGTGTGCCACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC
HS_assemblymutate_np1212 GAGCTCACATATGTGTGCCACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC
HS_haplotype2 GAGCTCACATATGTATGCCACAATTACATTTGTTGGACTGGCCTGTCCTGCTGAGGTGAC
************** *********************************************
HS_haplotype1 TGGGAGATCTCCTGACTACTGTCTGACCTCGGGAGGTGAGGAAAATACGTTGATGGTTAC
HS_assemblymutate_np1212 TGGGAGATCTCCTGACTACTGTCTGACCTCGGGAGGTGAGGAAAATACGTTGATGGTTAC
HS_haplotype2 TGGGACATCTCCTGACTACTATCTGACCTCGGGAGGTGAGGAAAATACGTTGATGGTTAC
***** ************** ***************************************
HS_haplotype1 CTAGCTGGACAAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA
HS_assemblymutate_np1212 CTAGCTGGACAAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA
HS_haplotype2 CTAGCTGGACGAAAACGGCAGTTTCTCATGTGAGACTCCGCGAAATTCCAACACATTCAA
********** *************************************************
HS_haplotype1 AAAAAGACCAAGGAAACTCCATCCAGGTGTGCTCATAAAATCATAAGATAGGGCACGAAA
HS_assemblymutate_np1212 AAAAAGACCAAGGAAACTCCATCCAGGTGTGCTCATAAAATCATAAGATAGGGCACGAAA
HS_haplotype2 AAAAAGACCAAGGAAACTCCATCCAGGTGTGCTCATAAAATCAAAAGATAGGGCAAGAAA
******************************************* *********** ****
HS_haplotype1 TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCAAAAGGTTAAGGA
HS_assemblymutate_np1212 TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCTAAAGGTTAAGGA
HS_haplotype2 TGGACATGCTATTCTGCCCAGTGCGAAGAGGATGTAATCCTGAGTTCTAAAGGTTAAGGA
*********************************************** ************
HS_haplotype1 TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG
HS_assemblymutate_np1212 TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG
HS_haplotype2 TTGTTTGGAATTGAACTTTTATTTTTGTATCCACAAGAAAGCAGTTGGCTTGAGTAGAAG
************************************************************
HS_haplotype1 CCTTGAGCAAGCCTTTGTTTCAGTTACATTTGGCTCTCCTATTGGTCCCCACTATATATT
HS_assemblymutate_np1212 CCTTGAGCAAGCCTTTGTTTCAGTTACATTTGGCTCTCCTATTGGTCCCCACTATATATT
HS_haplotype2 CCCTGAGCAAGCCTTTGTTTCAGTTACATTTGGCTCTCCTATTGGTCCCCACTATATATT
** *********************************************************
HS_haplotype1 CAGAAAGTACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTTTAAAAAC
HS_assemblymutate_np1212 CAGAAAATACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTTTAAAAAC
HS_haplotype2 CAGAAAATACTTATCCTGCAAACAGATTCCTAGGTGTGCTGCTACCTGGTCTCTAAAAAC
****** ********************************************* *******
HS_haplotype1 AAGAAAATGGATTTTGGGGCTTTGGCACCTTGGGAGACCAAGATAGCTCTATGACAATCC
HS_assemblymutate_np1212 AAGAAAATGGATTTTGGGGCTTTGGCACCTTGGGAGACCAAGATAGCTCTATGACAATCC
HS_haplotype2 AAGAAAATGGATTTTGGGGCTTTTGCACCTTGGGAGACCAAGATAGCTCTATGACAGTCC
*********************** ******************************** ***
HS_haplotype1 AGAGGCTATCTTCGCTAATGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG
HS_assemblymutate_np1212 AGAGGCTATCTTCGCTAATGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG
HS_haplotype2 AGAGGCTATCTTTGGTAATGACATGACTTCCATTTAGTGTTTTCTGTGGTATAAGAAGAG
************ * *********************************************
HS_haplotype1 ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAAATT
HS_assemblymutate_np1212 ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAAATT
HS_haplotype2 ATGAAAACCTGATCACCTGTCTCCCTTGGAAAAATGGTATGTATCATGAGAGTCAAAATT
************************************************************
HS_haplotype1 ACAGCTCTTGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGCGCCTGGTGTCAGACCAA
HS_assemblymutate_np1212 ACAGCTCTTGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGCGCCTGGTGTCAGACCAA
HS_haplotype2 ACAGCTCTTGTCTCAAGTTAGGTCAGGAAGGTGCTCGCAGCGCGCCTGGTGTCAGACCAA
************************************************************
HS_haplotype1 AAAGAAGGAAGGGCGAAAGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT
HS_assemblymutate_np1212 AAAGAAGGAAGGGCGAAAGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT
HS_haplotype2 AAAGAAGGAAGGGCGAATGATTAGGAAAATTAAAAGGACATAAATCTTCTGTGAAATATT
***************** ******************************************
HS_haplotype1 TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGACCCTAACTGCGCAGGTGATGACA
HS_assemblymutate_np1212 TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGCCCCTAACTGCGCAGGTGATGACA
HS_haplotype2 TTGGAGAAAGGATGCAGCAAGATATGTGGCTGGTTGCCCCTAACTGCGCAGGTGATGACA
************************************ ***********************
HS_haplotype1 GAGTTTATTTCGGTAAATGGATCAAAGAACACATTTATCTCCCATAATATATTAGAAAAG
HS_assemblymutate_np1212 GAGTTTATTTCGGTAAATGGATCAAGGAACACATTTATCTCCCATAATATATTAGAAAAG
HS_haplotype2 GAGTTTATTTCGGTAAATGGATCAAGGAACACATTTATCTCCCAAAATATATTAGAAAAG
************************* ****************** ***************
HS_haplotype1 AAAGGACAGCGATCCTTAGCCATATAGGATGGCTCATCAGCCCCAGTCTCGACCATGAAG
HS_assemblymutate_np1212 AAAGGACAGCCATCCTTAGCCATATAGGATGGCTCATCAGCCCCAGTCTCGACCATGAAG
HS_haplotype2 AAAGGACAGCCATCCTTAGCCATATAGGATGGCTCATCAGCCCCAGTCTCGACCATGAAG
********** *************************************************
HS_haplotype1 AACACTTTTTTCCTTTGTCCTTGTCTCGCGCCTGGCCGTCACTCCTTATAGGGACAAACC
HS_assemblymutate_np1212 AACACTTTTTTCCTTTGTCCTTGTCTCGCGCCTGGCCGTCACTCCTTATAGGGACAAACC
HS_haplotype2 AACACATTTTTCCTTTGTCCTTGTCTCGCGCCTGGCCGTCACTCCTTATAGGGACGACCC
***** ************************************************* * **
HS_haplotype1 AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGACTGAGGTTAA
HS_assemblymutate_np1212 AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGGCTGAGGTTAA
HS_haplotype2 AGCTATGGTGACGGAGAAGCTTCGCGATTCTAAATCTGTTGGGTGCCAGGCTGAGGTTAA
************************************************* **********
HS_haplotype1 AGAGAATCAATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA
HS_assemblymutate_np1212 AGAGAATCTATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA
HS_haplotype2 AGAGAATCTATCTAATTCCTTGGGATTTGGCTCCTATGGAATGAACTGAATCCCATCAGA
******** ***************************************************
HS_haplotype1 TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGAAAAAAATAATACCCTCTGTTC
HS_assemblymutate_np1212 TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGCAAAAAATAATACCCTCTGTTC
HS_haplotype2 TGCTGCTCCTTGGAAAATTTAAATCAAGTGCTTCTGGGCAAAAAATAATACCCTCTGTTC
************************************** *********************
HS_haplotype1 GACCCGGCAGCGATTCCCTAGCCCAAACCAATAAAAACACCCGAGAGAATGGGGCGTGTC
HS_assemblymutate_np1212 GACCCGGCAGCGATTCCCTAGCCCAAACCAATAAAAACACCCGAGAGAATGGGGCGTGTC
HS_haplotype2 GACCCGGCAGCGATTCCTTAGCCCAAACCAATAAAAACACCCGAGAGAATGGGGCGTGTC
***************** ******************************************
HS_haplotype1 CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA
HS_assemblymutate_np1212 CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA
HS_haplotype2 CTAGGTTCTCATTAGCAATTTTTGAGTCAGTGTGAACACTTTGACAGGAAGGGGATGAAA
************************************************************
HS_haplotype1 ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA
HS_assemblymutate_np1212 ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA
HS_haplotype2 ATAAAACCCTTCCGAAATAATAGTTTCTGAGGCAGCTCCAGAATTTAGTAATTGGTTGAA
************************************************************
HS_haplotype1 AATGTACGTGCCTTTCCATTGAAAGCTCAACATTCTGAAGTTTCAGGGTGACCTTGGCTG
HS_assemblymutate_np1212 AATGTACGTGCCTTTCCATTGAAAGCTCAACACTCTGATGTTTCAGAGTGACCTTGGCTG
HS_haplotype2 AATGTACGTGCCTTTCCATTGAAAGCTCAACACTCTGATGTTTCAGAGTGACCTTGGTTG
******************************** ***** ******* ********** **
HS_haplotype1 TCATATTTTCAAAAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCGGGCCTGGTA
HS_assemblymutate_np1212 TCATATTTTCACAAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCCGGCCTGGAA
HS_haplotype2 TCATATTTTCACAAGGCCGAGGCGCAGACTGAGGGGTCCCTGACTGCCTCCGGCCTGGAA
*********** ************************************** ******* *
HS_haplotype1 TCCACAGTTTGGAAGATTAACATGTTAATGTGATTACAGCTACCAGGCAGATTCAGTTAC
HS_assemblymutate_np1212 TCCACAGTTTGGAAGATTAACATGTTAGTGTGATTACAGCTACCAGGCAGATTCAGTTAC
HS_haplotype2 TCCACAGTTTGGAAGATTAACATGTTAGTGTGATTACAGCTACCAGGCAGATTCAGTTAC
*************************** ********************************
HS_haplotype1 TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGCACGAGCCATGTAAGTAAACATTATAT
HS_assemblymutate_np1212 TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGTACGAGCCATGTAAGTAAACATTATAT
HS_haplotype2 TTGAAATGTGGCGCAGCACAGGCGGAGTGGAAGTACGAGCCATGTAAGTAAACATTATAT
********************************* **************************
HS_haplotype1 CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG
HS_assemblymutate_np1212 CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG
HS_haplotype2 CACTGAAGATTCTCAGGAAGCTTTTCTCATCCATTCACTTTTACACAAATGGTGGAGTTG
************************************************************
HS_haplotype1 GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAGCA
HS_assemblymutate_np1212 GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAACA
HS_haplotype2 GAAACCCAACATTTCAGTCTCAAGTTTTACAGAATGTTCCCAAATGTGATTTAACCAACA
********************************************************* **
HS_haplotype1 TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTCTCTAAACAATCC
HS_assemblymutate_np1212 TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTCTCTAAACAATCC
HS_haplotype2 TCCCACGCCCAAGATGCCAAGGAATTAGACAATACGTGTGTGAGCTTTTCTAAACAATCC
*********************************************** ************
HS_haplotype1 TAGGAAGTGCAGACCCTCCCAGCAGTGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG
HS_assemblymutate_np1212 TAGGAAGTGCAGACCCTCCCAGCAGTGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG
HS_haplotype2 TAGAAAGTGCATACCCTCCCAGGAGGGACTACTTCTTTTAAAAAGCAAGACCACCGCCTG
*** ******* ********** ** **********************************
HS_haplotype1 ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC
HS_assemblymutate_np1212 ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC
HS_haplotype2 ACTAAAGGTTTACTAAGGCCCTGTCTGGGATTTGATATGTGCCCCAGACCAGCCCCTGCC
************************************************************
HS_haplotype1 TGGAGAAGAAGTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT
HS_assemblymutate_np1212 TGGAGAAGAAGTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT
HS_haplotype2 TGGAGAAGAACTGGCTCCCCTATTTAAAAGATTACTGAGAGTAAGTATTTGATTTGTGTT
********** *************************************************
HS_haplotype1 GTGTGCCTAGGCGCGGTCATGGCTCACCACACTGGGACTCGACCGCCCGGGAGAATTAAG
HS_assemblymutate_np1212 GTGTGCCTAGGCGCGGTCATGGCTCACCACACTGGGACTCGACCGCCCGGGAGAATTAAG
HS_haplotype2 GTGTGCCTAGGCGCGGGCATGGCTCACCACACTGGGACTCGACCGCCCGGGAAAATTAAG
**************** *********************************** *******
HS_haplotype1 AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTTTTGGACGGAA
HS_assemblymutate_np1212 AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTTTTGGACGGAA
HS_haplotype2 AAATAGCCCAGAAATTACTTTGCTTAGGGAACTATGGTGAAATATTTTTTTTGGACGGAA
************************************************************
HS_haplotype1 GGCCCTGAGGGATTATTTAATTGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC
HS_assemblymutate_np1212 GGCCCTGAGGGATTATTTAATTGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC
HS_haplotype2 GGCCCTGAGGGATTATTTAATAGGACCCACCTAACCGGCCTCAGGTGACTGTGTGTAGCC
********************* **************************************
HS_haplotype1 AGATGTTTGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGTATGGATGCCCCTTCTCAG
HS_assemblymutate_np1212 AGATGTTTGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGTATGGATGCCCCTTCTCAG
HS_haplotype2 AGATGTATGTTTCATTCAGAGCCCCTGTAGTCAGCTTTGAGAATGGATGCCCCTTCTCAG
****** ********************************** ******************
HS_haplotype1 TGAGCTCCAACTGCTTTCCAAATGCCTCAGGATGGGATTTCAACAAGAATTAGATTTTTT
HS_assemblymutate_np1212 TGATCTCCAACTGCTTTCCAAATGCCTCAGGATGGGATTTCAACAAGAATTAGATTTTTT
HS_haplotype2 TGATCTCCAACTGCTTTCCAAATGCCTCAGGATGGGATTTAAACAAGAATTAGATTTTTT
*** ************************************ *******************
HS_haplotype1 TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG
HS_assemblymutate_np1212 TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG
HS_haplotype2 TCAGCCCTCGGCTGGACCCATTTCAGAGAATTTAATTTGTGTGGTGTGTCTCTAACAGTG
************************************************************
HS_haplotype1 GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGGTAACAGAAA
HS_assemblymutate_np1212 GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGGTAACAGAAA
HS_haplotype2 GGGAATTATCTCTAACTGCAGCTGGCTGCTGAGATCAGTAATAGTGGTGGTTAACAGAAA
************************************************** *********
HS_haplotype1 TCTTGTTTTCCATGAGATATAAGTGACTTGTGTTTGTTGTTAATCATGACCTAGGCTGAG
HS_assemblymutate_np1212 TCTTGTTTTCCATGAGATATAAGTGACTTGTGTTTGTTGTTAATCATGACCTAGGCTCAG
HS_haplotype2 TGTTGTTTTCCATGAGATATAAGTGACTTGTGTTTGTTGTTAATCATGACCTAGGCTCAG
* ******************************************************* **
HS_haplotype1 CTAGCCATGCAGACTCCAGGAGTTCTCATTATAGATTCTCAAAAGTAGTGTATTTCCTGC
HS_assemblymutate_np1212 CTAGCCATGCAGACTCCAGGAGTTCTCATTATAGATTCTCAAAAGTAGTGTATTTCCTGC
HS_haplotype2 CTAGCCATGCAGACTCCAGGAGTTCTCATTATAGATTCTCAAAAGTAGTGTATTTCCTGC
************************************************************
HS_haplotype1 TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATTAGGT
HS_assemblymutate_np1212 TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATTAGGT
HS_haplotype2 TCGCTCGGAGCCAGAGACTGATACTTAGCTTTTGTAAAAGTAGCAGAGTCTCTATCAGGT
******************************************************* ****
HS_haplotype1 GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTCGAGGGTTTTACCGAAATGACGTGA
HS_assemblymutate_np1212 GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTCGAGGGTTTTACCGAAATGACGTGA
HS_haplotype2 GGTGGAAGCAAGGTTGCCCTCGTGGGCGTGAGTCTCGAGGGTTTTACCGAAATGACGTCA
********************************************************** *
HS_haplotype1 CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG
HS_assemblymutate_np1212 CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG
HS_haplotype2 CACAGTGCCTGAAACTATATGATGATTGCCCACCTTTGCAATCAAGGCCAAGAAGGCGGG
************************************************************
HS_haplotype1 AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA
HS_assemblymutate_np1212 AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA
HS_haplotype2 AGGAAAGTCAATTGTGTCAAAAAGAATGGCTCCTGAGGTTCGAGAGCATCTATATACACA
************************************************************
HS_haplotype1 TCTTCGGGAGGAGAGACATGGTCTGGGAAGTTGTCCGGCCGTCTTAGGTTCAAGCTCACT
HS_assemblymutate_np1212 TCTTCGGGAGGAGAGACATGGTCTGGGAAGGTGTCCGGCCGTCTTAGGTTCAAGCTCACT
HS_haplotype2 TCTTCGGGAGGAGAGACATGGTCTGGGAAGGTGTCCGGCCGTCTTAGGTTCAAGCTCACT
****************************** *****************************
HS_haplotype1 ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAGGTCTCACT
HS_assemblymutate_np1212 ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAGGTCTCACT
HS_haplotype2 ACCTGACTGCAACGTTGGCACTTAGATGAAACGGTGAAGTCACATCTTAAAAGTCTCACT
*************************************************** ********
HS_haplotype1 TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG
HS_assemblymutate_np1212 TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG
HS_haplotype2 TGAGAGCGGTAGGTGAGCACAGTAAAACTGCTATTTTATAAAATTAAATGCTTGATGAAG
************************************************************
HS_haplotype1 CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA
HS_assemblymutate_np1212 CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA
HS_haplotype2 CCATCGTAAGGGCCTATGCAAATATCTGGGGAAAAGGATCAGATAGGTCGCTCTGATAGA
************************************************************
HS_haplotype1 GGCCGCGGGCCCTGTTAAAGGTTTTTGTTGATGAGCTGTCTGTAATGTAATAGTAGTTTT
HS_assemblymutate_np1212 GGCCGCGGGCCCTGTTAAAGGTTTTTGTTGATGAGCTGTCTGTAATGTAATAGTAGTTTT
HS_haplotype2 GGCCGCGGGCCCTGTTAAAAGTTTTTGTTGATGAGCTGTCTGTAGTGTAATAGTAGTTTT
******************* ************************ ***************
HS_haplotype1 TACCCAGCCTGCCCTTAGCTCCTGCCCGGGTATGGTACGCTGCTCTCCTATCCACGCCTG
HS_assemblymutate_np1212 TACCCAGCCTGCCCTTAGCTCCTGCCCGGGTATGGTACGCTGCTCTCCTATCCACGCCTG
HS_haplotype2 TACCCAGCCTGCCCTTAGCTCCTGCCCGGTTATGGTAGGCTGCTCTCCTATCCACGCCTG
***************************** ******* **********************
HS_haplotype1 GTCTTATAAAATGCATAGAGGATCAGAAAAATTTATTTTTGGATAGGAAGTGCTGCTGCA
HS_assemblymutate_np1212 GTCTTATAAAATGCATAGAGGATCAGAAAAATTTATTTTTGGATAGGAAGTGCTGCTGCG
HS_haplotype2 GTCTTATAAAATGCATAGAGGATCAGAAAAATTTATTTTTGGATAGGAAGTGCTGCTGCG
***********************************************************
HS_haplotype1 TTCCGGTGGCAGGCTGATCCCTTTTCCTTATCAGGATGAGTTCCAAGACGAGATGGATAG
HS_assemblymutate_np1212 TTCCGGTGGCAGGCTGACCCCTTTTCCTTATCAGGATGAGTTCCAAGACGAGATGGATAG
HS_haplotype2 TTCCGGTGGCAGGCTGACCCCTTTTCCTTATCAGGATGAGTTCCAAGACGAGATGGATAG
***************** ******************************************
HS_haplotype1 CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA
HS_assemblymutate_np1212 CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA
HS_haplotype2 CTGTGTGGAAAATTTTACCCAAATTTTCTATATAATTTCAGAGAGATGCGGCCCCGGGCA
************************************************************
HS_haplotype1 GAAACTGAGGCCCACCTAAAATACCCAGAGGGCCGAGTGATTTGACATGCCACGAATAAC
HS_assemblymutate_np1212 GAAACTGAGGCCCACCTAAAATACCCAGAGGGCCGAGTGATTTGACATACCACGAATAAC
HS_haplotype2 GAAACTGAGGCCCACCTAAAATACCCAGAGGGCCGAGTGATTTGACATACCACGAATAAC
************************************************ ***********
HS_haplotype1 TCTGTCTCTAGGAACTGTAATCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG
HS_assemblymutate_np1212 TCTGTCTCTAGGAACTGTACTCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG
HS_haplotype2 TCTGTCTCTAGGAACTGTACTCTTCAAAGAAGTTAAAAAGGGATTTCTAGTCAGATGAGG
******************* ****************************************
HS_haplotype1 CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGGGAACCA
HS_assemblymutate_np1212 CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGCGAACCA
HS_haplotype2 CTTTGAAATGGGATGAGCGCCGGGCCAGCACTACACTTTTTTCTTTATTCAAGCGAACCA
***************************************************** ******
HS_haplotype1 GCTGGAGCGTTTGAGGAGATAACAAGAGAAATTGAATAAACCCTCTTCACAGAAAAAAGC
HS_assemblymutate_np1212 GCTGGAGTGTTTGAGGAGATAACAAGAGAAATTGAAAAAACCCTCTTCACAGGAAAAAGC
HS_haplotype2 GCTGGAGTGTTTGAGGAGATAACAAGAGAAATTGAAAAAACCCTCTTCACAGGAAAAAGC
******* **************************** *************** *******
HS_haplotype1 AATACAAATCAATTACGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT
HS_assemblymutate_np1212 AATACAAATCAATTAAGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT
HS_haplotype2 AATACAAATCAATTAAGTTCCAGCCTCAAAAGTGACTTTGGCTCTTGGGATATGTACACT
*************** ********************************************
HS_haplotype1 TCAGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAAAA
HS_assemblymutate_np1212 TCCGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAATA
HS_haplotype2 TCCGCCCTCAATTTTTCAGTTTGCTGCTTTGAAAATCAGATGATTTCAGATGTGTCAATA
** ******************************************************* *
HS_haplotype1 ATTCAAGTTTTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT
HS_assemblymutate_np1212 ATTCAAGTATTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT
HS_haplotype2 ATTCAAGTATTTATCATTCTAAAGTTCTAGCTATGCTCCCATTCATTTTATGATTCATCT
******** ***************************************************
HS_haplotype1 ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAATCCAGACATCACTTCTC
HS_assemblymutate_np1212 ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAACCCAGACATCACTTCTC
HS_haplotype2 ACTAAAATACTTATAAACTTTAATTAAAACTTTTCAAAGGAAACCCAGACATCACTTCTC
******************************************* ****************
HS_haplotype1 TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT
HS_assemblymutate_np1212 TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT
HS_haplotype2 TTATTTAAAGTTCTTATAAACAGTATGCTACTAATCCCATATGGATGACAGCGTAAGGCT
************************************************************
HS_haplotype1 GGTCCTAGAACATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATATTATTCC
HS_assemblymutate_np1212 GGTCCTAGAAGATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATATTATTCC
HS_haplotype2 GGTCCTAGAAGATCTTGCTCCTATGGTGTTTTTTTTTTATTTTGAAATTGATAATATTCC
********** ****************************************** ******
HS_haplotype1 TCAGATTCTGCCCTACAACCTCCCATGACAATTCCCCAGTAGAGAACCCACCTGCCCACC
HS_assemblymutate_np1212 TCAGATTCTGGCCTACAACCTCCCATGACAATTCCCCAGTAGAGAACCCACCTGCCCACC
HS_haplotype2 TCAGATTCTGGCCTACAACCTCCCATGATCATTCCCCAGTAGAGAACCCACCTGCCCATC
********** ***************** **************************** *
HS_haplotype1 ATTCTTTGCAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC
HS_assemblymutate_np1212 ATTCTTTGTAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC
HS_haplotype2 ATTCTTTGTAAACATACACCCAAGACATCTGATGCAGCCTGTTCCAAACATGGGAGAAAC
******** ***************************************************
HS_haplotype1 CACGTTGCATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACAATCCTTGAGA
HS_assemblymutate_np1212 CACGTTACATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACAATCCTTGAGA
HS_haplotype2 CACGTTACATACGAGCGCAAGCTCTCAATAAACCTTTCTTCTCAGCCACATTCCTTGAGA
****** ******************************************* *********
HS_haplotype1 TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGGCTCACTGAATCTGAGGCGT
HS_assemblymutate_np1212 TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGGCTCACTGAATCTGAGGCGT
HS_haplotype2 TCCAAATGAATCGCTCGGGTGCTGTGGGGACCAGGCTAGGTCTCACTGAATCTGGGGCGT
**************************************** ************* *****
HS_haplotype1 GGCTATTGTCAGTCTCAGCTCAGGCGCAAGCCTGGAAATTATAAACGTTACCATGTATTG
HS_assemblymutate_np1212 GGCTATTGTCAGTCTCAGCTCAGGCGCAAGCCTGGAAATTATAAACGTTACCATGTATTG
HS_haplotype2 GGCTATTGTCAGTCTCAGCTCGGGCGCAAGCCTGGATATTATAAACGTTACCATGTATTG
********************* ************** ***********************
HS_haplotype1 GATCCTGGGAGGTCAGAAACATCACCCCCATTGGCCTCACTTACGAAACTGCTGTGCACG
HS_assemblymutate_np1212 GATCCTGGGAGGTCAGAAACATCACCCCCATTGGCCTCACTTACGAAACTGCTGTGCACG
HS_haplotype2 GATCCTGGGAGGTCAGAAACATCACCCCCATTGGCCTTACTTACGAAACTGCTGTGCACG
************************************* **********************
HS_haplotype1 TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT
HS_assemblymutate_np1212 TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT
HS_haplotype2 TACCTTTCCTCCGGCTCTCGCTGACAAAAAGGCAATGTCACAAATACAAAAATTGCTATT
************************************************************
HS_haplotype1 GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA
HS_assemblymutate_np1212 GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA
HS_haplotype2 GTGCTGGGAAGTCTACTTACAATTGAAGCATTTTGCAGTTGGGAGAGCTTCTGAGTTCAA
************************************************************
HS_haplotype1 TTAGCAGCCTGGAGAGAAGACAATTAAGTTTAAATATTCCTATTTCTTACAGTCTTTGTT
HS_assemblymutate_np1212 TTAGCAGCCTGGAGAGAAGACAATTAAGTTTAAATATTCCTATTTCTTACAGTCTTTGTT
HS_haplotype2 TTAGCAGTCTGGAGAGAAGACAATTAAGTTAAAATATTCCTATTACTTACAGTCTTTGTT
******* ********************** ************* ***************
HS_haplotype1 AAGCTGGGCTTCATTTCTCCATGAGTGCCTCACTGTTGGGACTAAAATTAGCTTCCAGGC
HS_assemblymutate_np1212 AAGCTGGGCTTCATTTCTCCATGAGTGCCTCACTGTTGGGACTAAAATTAGCTTCCAGGC
HS_haplotype2 AAGCTGGGCTTCATTTCTCCATGAGTGCCTCACTGTTGGGACTAAAATTAGCTTCCAGGC
************************************************************
HS_haplotype1 GTGAGAAGAGATCATCTGGGCAGACCGCAGCCCTTGACTTGCGCTGCTTTTATAATGGCG
HS_assemblymutate_np1212 GTGAGAAGAGATCATCTGGGCAGACCGCAGCCCTTGACTTGCGCTGCTTTTATAATGGCA
HS_haplotype2 GTGAGAAGAGATCATCCGGGCAGACCGCAGCCCTTGACTTGGGCTGCTTTTATAATGGCA
**************** ************************ *****************
HS_haplotype1 TTATTTAGTTTCCTTCTTTTAATTTATTTGCTGGGTGGCCGAGTAAGTTCACTGTCAAAA
HS_assemblymutate_np1212 TTATTTAGTTTCCTTCTTTTAATTTATTTGCTGGGTGGCCGAGTAAGTTCACTGTCAAAA
HS_haplotype2 TTATTTAGTTTCCTTCTTTTAATTTATTTGCTGGGTGGCCGAGTAAGTTCACTGTCAAAA
************************************************************
HS_haplotype1 AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGATTATGCTCAAAC
HS_assemblymutate_np1212 AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGAATATGCTCAAAC
HS_haplotype2 AAATATGTATCCCCAGGCTATCCACCCTGAGCCACACAGGCTGCAGGAATATGCTCAAAC
************************************************ ***********
HS_haplotype1 TGAGTAATTGTAATATAAAATTTTATACTTTTCATGTGCTGTGCACCTTGGCTCTGGTTT
HS_assemblymutate_np1212 TGAGTATTTGTAATATAAAATTTTATACTTTTCATGTGCTGTGCACCTTGGCTCTGGTTT
HS_haplotype2 TGAGTATTTGTAATATAAAATTTTATACTTTTCATGTGCTGTGCACCCGGGCTCTGGTTT
****** **************************************** ***********
HS_haplotype1 CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCTCTTTATCTGATGT
HS_assemblymutate_np1212 CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCTCTTTATCTGATGT
HS_haplotype2 CAAAAAGATTTTTTCTGTCAGGTAGAGATGCAGCCTGGCTGGGCCCTCTTTATCTGATGT
************************************************************
HS_haplotype1 GTGGCAATCCTACCAACACACTACGGATGGTCAGGTGGTGTGTTGCACAGAGATGCCCTT
HS_assemblymutate_np1212 GTGGCAATCCTACCAACACACTGCGGATGGTCAGGTGGTGTGTTGCACAGAGATGCCCTT
HS_haplotype2 GTGGCAATCCTACCAACACACTGCGGATGGTCAGGTGGTGTGTTGCACAGAGATGCCCTT
********************** *************************************
HS_haplotype1 TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC
HS_assemblymutate_np1212 TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC
HS_haplotype2 TCAAACGGAGCTGGTTCAACTCTAGGAATATACACCAGCCTCAAAGCTCTCCGCGGGGCC
************************************************************
HS_haplotype1 AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC
HS_assemblymutate_np1212 AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC
HS_haplotype2 AGAATTTACTGGCATAGCACCATGAGGCCCCAAGCTCAGAAACAAAGAGTTCTCCTTTGC
************************************************************
HS_haplotype1 TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCAAACCAGTCATAAAAG
HS_assemblymutate_np1212 TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCACACCAGTCATAAAAG
HS_haplotype2 TGACCACGCAGAATTTTCCCTTATCATGACCCGGGAACCAGAGCACACCAGTCATAAAAG
********************************************* **************
HS_haplotype1 AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC
HS_assemblymutate_np1212 AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC
HS_haplotype2 AAGTCATTCAAACGTAGGTAGTGTGTCCCCGATCTTTCCTAAACCTCCCAGCGCGTTCAC
************************************************************
HS_haplotype1 TAACAAAAATTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC
HS_assemblymutate_np1212 TAACAAAAACTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC
HS_haplotype2 TAACAAAAACTCTGTTTTTGAGTAATACAGAGAGGAAATCCCATCTCAGAAAGTGAGAGC
********* **************************************************
HS_haplotype1 ACTCAGGGTTTCCCTCAGCTTGTCAAATTGGACAAATTGTCCATAAATTCATAAATGAAA
HS_assemblymutate_np1212 ACTCAGGGTTCCCCTCAGCTTGTCAAATTGGACAAATTGTCCATAAATTCATAAATGAAA
HS_haplotype2 ACTCAGGGTTCCCCTCAGCTTGTCAAATTGTACAAATTGTCCATAAATTCATAAATGAAA
********** ******************* *****************************
HS_haplotype1 ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG
HS_assemblymutate_np1212 ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG
HS_haplotype2 ATGATGCAAGAGGAGGGGGCATCTATTTTCCCCTTTTACAAATTAATTACCTGGGCGCGG
************************************************************
HS_haplotype1 TGAAGTCAATTGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA
HS_assemblymutate_np1212 TGAAGTCAATAGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA
HS_haplotype2 TGAAGTCAATAGTTTTTAGGACCATCCCTTTTGTGTATTTGTAATGGAGGATTCTCAACA
********** *************************************************
HS_haplotype1 GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT
HS_assemblymutate_np1212 GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT
HS_haplotype2 GAAACAGTCTCCACTTCAAAAACACCTTATGCTCTGCGGCAGAGAGAAGGAATTGTTCAT
************************************************************
HS_haplotype1 AGCCACACTTTCTATCTATTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA
HS_assemblymutate_np1212 AGCCACACTTTCTATCTTTTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA
HS_haplotype2 AGCCACACTTTCTATCTTTTGTGAACTTTGAATATAATAAAACAGTGAAGTTAATTTGAA
***************** ******************************************
HS_haplotype1 GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT
HS_assemblymutate_np1212 GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT
HS_haplotype2 GCAGCAAACATGGCTTGTCCCCATCATCTAAATATTGTAGAACAAATACTTGTAGCTAAT
************************************************************
HS_haplotype1 TTATTTCCAACTTAACCTATATACCTGAGGAATTCCACTATTCCACTGTAATCAGCCTGT
HS_assemblymutate_np1212 TTATTTCCAACTTAACCTATATACCTGAGGAATTCCACTATTCCACTGTAATCAGCCTGT
HS_haplotype2 TTATTTCCAACTTAACCTATATACCTGAGAAATTCCACTATTCCACTGTAATCAGCCTGT
***************************** ******************************
HS_haplotype1 AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA
HS_assemblymutate_np1212 AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA
HS_haplotype2 AGAAACAAAAACCCAAAGAAACCCTGGCCCATGGTATAACGGAGTGAGTAGCGCACACAA
************************************************************
HS_haplotype1 AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG
HS_assemblymutate_np1212 AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG
HS_haplotype2 AAATGGGAGGGCCCTACCCTGTCACTGCGCCGTATAAAACTAGGATCTGTCACCAGCAAG
************************************************************
HS_haplotype1 TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTACCTGATACC
HS_assemblymutate_np1212 TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTACCTGATACC
HS_haplotype2 TAGGTGGGCTCGACCCTCTGCAAGAATTTGGGTGGAGAAATGCTAGAATTCCCTGATACC
************************************************** *********
HS_haplotype1 CCGGGGACCATGCAATTCCCCGACCCAGAAACCGTTCCTTAATAGCTTGGGTTTTATGTA
HS_assemblymutate_np1212 CCGGGGACCATGCAATTCCCCGACCCAGAAACCGTTCCTTAATAGCTTGGGTTTTATGTA
HS_haplotype2 CCGGGGACCATGCAATTCCCCGACCCAGAAACCCTTCCCTAATAGCTTGGGTTTTATGTA
********************************* **** *********************
HS_haplotype1 AAGGGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGT
HS_assemblymutate_np1212 AAGGGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGT
HS_haplotype2 AAGAGGTGGCCGAGCAGAGCTGGAGTTAATATGAACTTCCTGGAGGGAGCAATGTCTTGC
*** *******************************************************
HS_haplotype1 TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTGAGCCAAAAACTAG
HS_assemblymutate_np1212 TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTCAGCCAAAAACTAG
HS_haplotype2 TGTCTTATGCCCAGGTGGACCCAGGCTGCATCTCGCTTTGAGATCTCAGCCAAAAACTAG
********************************************** *************
HS_haplotype1 CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG
HS_assemblymutate_np1212 CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG
HS_haplotype2 CTCTCTGCCAAGTAAGTGGCAACATTCTATCCCCAGGAGTTTTACCTTTGATGCCAGATG
************************************************************
HS_haplotype1 AGGTACCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC
HS_assemblymutate_np1212 AGGTTCCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC
HS_haplotype2 AGGTTCCAAGGAAAACTTATAGTATATTAAACTAGAATAGAATCCCAAGTCACCCACCTC
**** *******************************************************
HS_haplotype1 AGCCGGCTCCACAACAACAGCCTTTTCGCACATAGGAGGCTTCAAATACGACATATATAC
HS_assemblymutate_np1212 AGCCGGCACCACAACAACAGCCTTTTCGCACATAGGAGGCTTCATATACGACATATATAC
HS_haplotype2 AGCCGGCACCACAACAACAGCCTTTTCGCACATAGGAGGCTTCATATACGACATATATAC
******* ************************************ ***************
HS_haplotype1 GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT
HS_assemblymutate_np1212 GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT
HS_haplotype2 GAAAGAAAACCACGAGGCCCTAGTTATGGTTGCAGCTGGGCAGGCATGTCCATGCTTCCT
************************************************************
HS_haplotype1 AAAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTCCCAGATCACGCCGCCTCAAATC
HS_assemblymutate_np1212 AAAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTGCCAGATCACGCCGCCTCAAATC
HS_haplotype2 AAAATCAAAACCAACCTTCCCCCGGGAGCCAGGTGGTGCCAGATCACGCCGCCTCAAATC
************************************* **********************
HS_haplotype1 ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGACTCACAGCAGGG
HS_assemblymutate_np1212 ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGACTCACAGCAGGG
HS_haplotype2 ATAGTGTGACTGGTGCCTAAGAAGGTTAAATGCTCAGCTCACGGGAGGCTCACAGCAGGG
*********************************************** ************
HS_haplotype1 AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCTGAGTAAA
HS_assemblymutate_np1212 AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCTGAGTAAA
HS_haplotype2 AGTTCATCTCCTCAGCCTAGCCAGCCTTGGCACCATTTTGTTTATAGTTATCTGAGTAAA
************************************************************
HS_haplotype1 GAGAAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTCTGTGTGC
HS_assemblymutate_np1212 GAGAAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTGTGTGTGC
HS_haplotype2 GAGAAGGTTACACTCATGCTGCCTGTATTGCCCACCAGATAGGTTTCACAGTGTGTGTGC
**************************************************** *******
HS_haplotype1 AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC
HS_assemblymutate_np1212 AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC
HS_haplotype2 AGCAGGAATAAATTAGGAGTGATACAAATTCAAAGAGGGTCGTCTCTACTCTGCCACCTC
************************************************************
HS_haplotype1 TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGAAGTGCAT
HS_assemblymutate_np1212 TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGCAGTGCAT
HS_haplotype2 TCCCAGGCCCAGAAGCAATTATCTCTGCCCTATGGCCCTGGTCTCAAGAATGCAGTGCAT
**************************************************** *******
HS_haplotype1 GATTTTCACCCAGCACCCAGTGGGTCAGTAGCTCCTGACCACTGTTGAAGCCATTCCAAG
HS_assemblymutate_np1212 GAATTTCACCCAGCACCCAGTGGGTCAGTAGCTCCTGACCACTGTTGAAGCCATTCCAAG
HS_haplotype2 GAATTTCACCCAGCACCCAGTGGGTCAGTAGCTCCTGACCACTGTTGAAGCCATTCCAAG
** *********************************************************
HS_haplotype1 ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG
HS_assemblymutate_np1212 ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG
HS_haplotype2 ATGTCCCTCAGAAGCTTGGGGGCTCGGGCTTTAGAAAATAAATATATAACTACAAATTAG
************************************************************
HS_haplotype1 CTAAGTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA
HS_assemblymutate_np1212 CTAATTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA
HS_haplotype2 CTAATTTTGCATCCTATATGTATAAGCTGTTTTGTGTAGCTAAGAGACCTGGGTTTGTCA
**** *******************************************************
HS_haplotype1 AGGTTTTTCCTCCTCTGTTCAGCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT
HS_assemblymutate_np1212 AGGTTTTTCCTCCTCTGTTGACCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT
HS_haplotype2 AGGTTTTTCCTCCTCTGTTGACCCTTGGGAGATGAAAGGAATCAGAGTGCTTACCCCCTT
******************* * **************************************
HS_haplotype1 GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTGGTG
HS_assemblymutate_np1212 GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTGGTG
HS_haplotype2 GGCCTGTTCAGTGATACACAGCTCACCTAACACTCAGTCCCCATGGCATATTGGTTAGTG
******************************************************** ***
HS_haplotype1 TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA
HS_assemblymutate_np1212 TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA
HS_haplotype2 TAATTCACTTGTTTTGCCACCAGTTACCTAGCATCTTCTAAACTGCCAATACAAAAAAAA
************************************************************
HS_haplotype1 AATACTCCATCCTGCCTGTGCCTGACTCCCTCTGACTTGCCTCCGGCTACTCCCTACAGA
HS_assemblymutate_np1212 AATACTCCATCCTGCCTGTGCCTGACTCCCTCTGACTTGCCTCCGGCTACTCCCTACAGA
HS_haplotype2 AATACTCCATCCTGCCTGTGCCTGACTCCCTCAGACTTGCCTCCGGCTACTCCCTACAGA
******************************** ***************************
HS_haplotype1 CCCCCGCCACCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAAGGGAATCAG
HS_assemblymutate_np1212 CCCCCGCCACCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAAGGGAATCAG
HS_haplotype2 CCCCCGCCACCCGGCCGAGTGGGCGTTCCTTTACAGATGGTGTGGTGGGAGGGGAATCAG
************************************************** *********
HS_haplotype1 TCTCCTGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCAGCAGCAATGTAACATGTTAA
HS_assemblymutate_np1212 TCTCCTGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCATCAGCAATGTAACATGTTAA
HS_haplotype2 TCTCCTGGAGCCCGGTGAATTCTTTTTAGTAAGGAAATCATCAGCAATGTAACATGTTAA
**************************************** *******************
HS_haplotype1 TACAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAAGACAAAAAGCAAGCAAAT
HS_assemblymutate_np1212 TACAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAATACAAAAAGCAAGCAAAT
HS_haplotype2 TTCAGGTTTGCAGGAAAGACGGGGAAAACAACAATATAAAAATACAAAAAGCAAGCAAAT
* **************************************** *****************
HS_haplotype1 AAGCTGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT
HS_assemblymutate_np1212 AAGCCGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT
HS_haplotype2 AAGCCGTAATCATAACAGAACCTGATTCACTTAAGTAAGGAAATGGCCCCAGCGCATTTT
**** *******************************************************
HS_haplotype1 CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT
HS_assemblymutate_np1212 CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT
HS_haplotype2 CTCCTGTGGCTGGGTGCAGCAAAGTGGTTGCTAACTTAAGTTTTAAAAGTACTTTGGACT
************************************************************
HS_haplotype1 GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATCATGTCT
HS_assemblymutate_np1212 GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATAATGTCA
HS_haplotype2 GTAAATAATGACTAGGCATCGCTCAAAAGAATATCAGGAACGATAACTAAAATAATGTCA
***************************************************** *****
HS_haplotype1 CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT
HS_assemblymutate_np1212 CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT
HS_haplotype2 CACCATGAGCTTACTAGATCACTCCTGTGCCACAGCTAGGTCCACCTTTATATAGTAGAT
************************************************************
HS_haplotype1 AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC
HS_assemblymutate_np1212 AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC
HS_haplotype2 AGAGACTGTTTAATTGAAAACACTAGGTAATGAGGGCCAGGGACTTTAAGGAGGTGGCCC
************************************************************
HS_haplotype1 TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAATGAAAGGCTGGGGTACTAAGCCAC
HS_assemblymutate_np1212 TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAATGAAAGGCTGGGGTACTAAGCCAC
HS_haplotype2 TTCACAAGAAACAATCAAACAGCAAAGCCGAGATAATGAAAGGCTGGGGTACTAAGCCAC
************************************************************
HS_haplotype1 CCAGCTACTGCGGTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG
HS_assemblymutate_np1212 CCAGCTACTGCGGTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG
HS_haplotype2 CCAGCTACTCCGCTGGCTGGGATTATGCAGTGCCATTTAAGTCTATTATTGGATTGCCCG
********* ** ***********************************************
HS_haplotype1 GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA
HS_assemblymutate_np1212 GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA
HS_haplotype2 GCTGAGACTCAGCCCAGGAGTTCCACAGTCTCGGGCGTACAAAACAGTCACTGTTAGCTA
************************************************************
HS_haplotype1 CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG
HS_assemblymutate_np1212 CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG
HS_haplotype2 CATTTATTTTTTTGTCGCGTCGCCATTTTGATTACTGTGAGACCAGGAGTTAGATTCCAG
************************************************************
HS_haplotype1 GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGATTGTAAAGACACTGAGCA
HS_assemblymutate_np1212 GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGATTGTAAAGACACTGAGCA
HS_haplotype2 GGTGGCAGGGTTGTGTCCATCTGGAAGCATTGCCCAAGTGGCTTGTAAAGAAACTGAGCA
***************************************** ********* ********
HS_haplotype1 ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG
HS_assemblymutate_np1212 ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG
HS_haplotype2 ATTTTATGAACCATCCTGCACCGCACCATTGAATGCAACCACTACTGACAGGGGAGGCAG
************************************************************
HS_haplotype1 CTAGGAGCGCCGGGTTGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGACCCATCC
HS_assemblymutate_np1212 CTAGGAGCGCCGGGTTGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGACCCATCC
HS_haplotype2 CTAGGAGCGCCGGGTGGCTTTTTTCCTAAGTCTGACCTCTCACTCCCGAAAGAGCCATCC
*************** ************************************* ******
HS_haplotype1 CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCAAAAAACCC
HS_assemblymutate_np1212 CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCGAAAAACCC
HS_haplotype2 CACTGCCCGTCTCGCTCTACTCCAGACCAGGACCAATATAGATATCTAGGCGAAAAACCC
*************************************************** ********
HS_haplotype1 AAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTACGCCAGCTCACGGGTGG
HS_assemblymutate_np1212 GAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTACGCCAGCTCACGGGTGG
HS_haplotype2 GAGACTCGGAGCGCGGGAGGTGAGGTCAGTACGCCACTGGCTGCGCCAGCTCACGGGTGG
***************************************** *****************
HS_haplotype1 TCTTAGTATGTTGTCATTTAAAACTTGAATTAAAGAAGGGCTGCGACAGACGGAGTGTCT
HS_assemblymutate_np1212 TCTTAGTATGTTGTCATTTAAAACTTGAATTAAAGAAGGGCTGCGACAGACGGAGTGTCT
HS_haplotype2 TCTTAGTATGTTCTCATTTAAAACTTGAATTAAAGAAGGGCTGGGACAGATGGAGTGTCT
************ ****************************** ****** *********
HS_haplotype1 AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT
HS_assemblymutate_np1212 AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT
HS_haplotype2 AAAAAATCCTTTGTGTGTTTTTGTATGTGCACCTGTACCCCAGTGTAGATGCTGTTAACT
************************************************************
HS_haplotype1 CTGTTTCTTGAGAGAAATCCAGTATGTGTATATTCTTTCCAGGGAATCCTTTTTGTACAA
HS_assemblymutate_np1212 CTGTTTCTTGAGAGAAATCCAGTATGTGTATATTCTTTCCAGGGAATCCTTTTTGTACAA
HS_haplotype2 CTGTTTCTTGAGAGAAATCCAGTATGTGTATAATCTTTCCAGGGAATCCTTTTTGTACAA
******************************** ***************************
HS_haplotype1 AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC
HS_assemblymutate_np1212 AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC
HS_haplotype2 AAGGAGGTATTTGTGAAGGCTCTATCTCAGGACACAGAGCTAACTTTGTAATTAGCGATC
************************************************************
HS_haplotype1 ACTTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA
HS_assemblymutate_np1212 ACCTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA
HS_haplotype2 ACCTAAAAATGAGGCAGACTTCATGCTAGCAGGTAATAATACATTTTTGAACATGTTAAA
** *********************************************************
HS_haplotype1 TTCAAGATTTCAGGTCAGTCGCCCATCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG
HS_assemblymutate_np1212 TTCTAGATTCCAGGTCAGTCGCCCATCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG
HS_haplotype2 TTCTAGATTCCAGGTCAGTCGCCCATCATTTCTCGGCCTAACCTGAAGGAATGAGACTTG
*** ***** **************************************************
HS_haplotype1 GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTCGACCCGCCCTCAGTTTGAGTTGTTT
HS_assemblymutate_np1212 GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTAGACCCGCCCTCAGTTTGAGTTGTGT
HS_haplotype2 GGAAAATTCATGTGTGCTGTGGGAGTCCTTGGGTAGACCCGCCCTCAGTTTGAGTTGTGT
********************************** *********************** *
HS_haplotype1 GTTTATCTATTAAAAACCGATGATGGGCTTAGCCAGAGCTCATTCATTTCTTTAAAGAAA
HS_assemblymutate_np1212 GTTTATCTATTAAAAACCGATGATGGGCTTGGACAGAGCTCATTCATTTCTTTAAAGAAA
HS_haplotype2 GTTTATCTATTAAAAACCGATGATGGGCTTGGACAGAGCTCATTCATTTCTTTAAAGAAA
****************************** * ***************************
HS_haplotype1 AAATCTCTTCAGGAGAAGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG
HS_assemblymutate_np1212 AAATCTCTTCAGGAGATGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG
HS_haplotype2 AAATCTCTTCAGGAGATGAAACCAATGTGACCAGAGCCAGAAAACCCCTCCTTTCCTAAG
**************** *******************************************
HS_haplotype1 GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGACCTCTTTTGTTTTGT
HS_assemblymutate_np1212 GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGATCTCTTTTGTTTTGT
HS_haplotype2 GTCATTGCATTTTCCAAGTGCTTAAGAAGGTATGTGTATGGAAGATCTCTTTTGTTTTGT
********************************************* **************
HS_haplotype1 AATCTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT
HS_assemblymutate_np1212 AATCTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT
HS_haplotype2 AATCTTGGTTAAGAAAACTTGGTTTCTAAGCCTGGGTTCCCCCCAGGCGGAGCTTTCCCT
************************************************************
HS_haplotype1 TAACACTACAATATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA
HS_assemblymutate_np1212 TAACACTACAATATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA
HS_haplotype2 TAACACTACATTATCTGTGGAAGAAAAATGTGGAGGCGCGCTGCGGCCTTGAAAATTGCA
********** *************************************************
HS_haplotype1 TCATCTCAAAATGTGTGCTTGAAAGGTGCGAGTGATTACTCTGGTGCCTTGTTCCGAAGG
HS_assemblymutate_np1212 TCATCTCAAAATGTGTGCTTGAAAGGTGCGAGTGATTACTCTGGTGCCTTGTTCCGAAGG
HS_haplotype2 TCATCTCAAAATGTGTGCTTGAAAGGTGTGAGTGATTACTCTGGTGCCTTGTTCCGAAGG
**************************** *******************************
HS_haplotype1 GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA
HS_assemblymutate_np1212 GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA
HS_haplotype2 GTACATGGGGAGTGGTTTCTGCGGGAGGGCCGCGCGCCTGTATTGTTAGTATAGGGTAGA
************************************************************
HS_haplotype1 CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG
HS_assemblymutate_np1212 CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG
HS_haplotype2 CTGCTGAACAAATAATGTGGATGTGAAGTATGTTATGACCCCACTTAATTAGTTTTTAAG
************************************************************
HS_haplotype1 ACATGGTGGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCACGCCTA
HS_assemblymutate_np1212 ACATGGTAGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCATGCCTA
HS_haplotype2 ACATGGTAGATTATATGCCTGTTAATATATTAGCCTTGACATTCAAGATTAGCATGCCTA
******* ********************************************** *****
HS_haplotype1 CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGGAGCAACCCCTTGAGACGGGAA
HS_assemblymutate_np1212 CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGGAGCAACCCCTTGAGACGGGAA
HS_haplotype2 CCCAAAGCAAGAATGCCAGATTTGTCTAATGTGAGGTGGAGCAACCCCTTGAGACGGGAA
************************************************************
HS_haplotype1 CAAATGTACAGGTCAATCTGTATTATTCGAGGAAGCTTGGGCAAGGGCCTCTGGTCTGAG
HS_assemblymutate_np1212 CAAATGTACAGGTCAATCTGCATTATTCGAGGAAGCTGGGGCAAGGGCCTCTGGTCTGAG
HS_haplotype2 CAAATGTACAGGTCAATCTGCATTATTCGAGGAAGCTGGGGCAAGGGCCTCTGGTCTGAG
******************** **************** **********************
HS_haplotype1 GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC
HS_assemblymutate_np1212 GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC
HS_haplotype2 GTTGGATGTATAAATGATGGTGAAGTTCTCATATATTTAAAAATCTCTGGAGACTGGTGC
************************************************************
HS_haplotype1 GCTCTGAAATTATTTGTTCAGTGAAAAGAAACAAAAGAACTCCACCAACCTGATTGAGTG
HS_assemblymutate_np1212 GCTCTGAAATTATTTTTTCAGTGAAAAGAGACAAAAGAACTCCACCAACCTGATTGAGTG
HS_haplotype2 GCTCTGAAATTATTTTTTCAGTGAAAAGAGACAAAAGAACTCCACCAACCTGATTGAGTG
*************** ************* ******************************
HS_haplotype1 GAGAATCACTGTGGAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG
HS_assemblymutate_np1212 GAGAATCACTGTGGAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG
HS_haplotype2 GAGAATCACTGTGCAAAAAATTGATTTAAAGTGCTGTATTAGAAAAAAATGTGATTCTAG
************* **********************************************
HS_haplotype1 AATGGCTATTTTTTAATATCGCATGGAACTTCCCAGGCGGATTAGGCAGCTTGATTAACT
HS_assemblymutate_np1212 AATGGCTATTTTTTAATATCGCATGGAACTTCCCAGGCGGATTAGGCAGCTTGATTAACT
HS_haplotype2 AATGGCTATTTTTTAATATCACATGGAACTTCCCAGGCGGATTAGCCAGCTTGATTAACT
******************** ************************ **************
HS_haplotype1 GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCTGGGCAGAGAACCCAGTCTG
HS_assemblymutate_np1212 GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCTGGGCAGAGAACCCAGTCTG
HS_haplotype2 GCAATGGGACATATGGAATAAATAGAAATTAAAATCTAGCTGGGCAGAGAACCCAGTCTG
************************************************************
HS_haplotype1 TGTGACAGCTTGAAGAAACTGACCTTAGTTAACTCCGCGGGTGGTGGCAACATTGCATTG
HS_assemblymutate_np1212 TGTGACAGCTTGAAGAAACTGACCTTAGTTAACTCCGCGGGTGGTGGCAACATTGCATTG
HS_haplotype2 TGTGACAGCTTGAAGAAACTGACCTTAGTTAACTCCGCGGGTGGTGGCAACATTGCATTG
************************************************************
HS_haplotype1 CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA
HS_assemblymutate_np1212 CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA
HS_haplotype2 CTTTGGATATTTCACCAAATTTGTTCTAGAGACAAAGGAATCTTCTAGCCGCCACATACA
************************************************************
HS_haplotype1 TTTGGCACCACAAGTATTTTTGGGGGGATACCCCACATGTTATTAGTGAAACAGGCGGGT
HS_assemblymutate_np1212 TTTGGCACCACAAGTATTTTTGGGGGGATACCCCACATGTTATTAGTGAAACAGGCGGGT
HS_haplotype2 TTTGGCACCACAAGTATTTTTGGGGGGAAACCCCACATGTTATTAGTGAAACAGGTGGGT
**************************** ************************** ****
HS_haplotype1 TTCATAAGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCGGGAGGTTCAAAA
HS_assemblymutate_np1212 TTCATAAGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCGGGAGGTTCAAAA
HS_haplotype2 TTCATACGCTGAGAATTCATTATAGGAAAGATAGTCACTTTGACAGCAGGAGGTTCAAAA
****** **************************************** ************
HS_haplotype1 ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCAAATGCCTGGGA
HS_assemblymutate_np1212 ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCAAATGCCTGGGA
HS_haplotype2 ACGAAACATATACACATATTTAATTATTTTCCCTCCAGGCTGATTAGCGAATGCCTGGGA
************************************************ ***********
HS_haplotype1 TTACTTAACTTGTACTCAATGGTTATGGAGGCTGTGTGAGTAGCGCCCAAAACTCGACAG
HS_assemblymutate_np1212 TTACTTAACTTGTCCTCAATGGTTATGGAGGCTGTGTGAGTAGCGGGCAAAACTCGACAG
HS_haplotype2 TTACTTAACTTGTCCTCAATGGTTATGGAGGCTGTGTGAGTAGCGGGCAAAACTCGACAG
************* ******************************* *************
HS_haplotype1 AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC
HS_assemblymutate_np1212 AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC
HS_haplotype2 AGAATTATAGATCCTATTGCTGGGACTGATAATTCTCCTCCTGGGATTTAAAAGCTAGCC
************************************************************
HS_haplotype1 TGGGAATTGCAGGAGATTTATATTGTGATCTGCCTGAATCCCCAAGAGCACAGATATGAC
HS_assemblymutate_np1212 TGGGAATTGCAGGAGATTTATATTGTGATCTGCCTGAATCCCCAAGAGCACAGATATGAC
HS_haplotype2 TGGGAATTGCAGGAGATTTATATTGTGATCTGCCTGAATCCCCAAGAGCACAGATATGAC
************************************************************
HS_haplotype1 CCTTAAGACTCCATCGCTTCTATTCGCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT
HS_assemblymutate_np1212 CCTTAAGACTCCATCGCTTCTATTCGCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT
HS_haplotype2 CCTTAAGACTCCATCGCTTCTATTCCCACATAATTTTTGGTGCGTCCCTCGGGCTCTTAT
************************* **********************************
HS_haplotype1 GGCTAACCCCTGTATGCCAGTTTTTTTGTGAGCCCCGAACTGTGTACCCAGTTCTCCCGC
HS_assemblymutate_np1212 GGCTAACCCCTGTATGCCAGTTTTTTTGTGAGCCCCGAACTGTGTACCCAGTTCTCCCGC
HS_haplotype2 GGCTAACCCCTGTATGCCAGTTTTTTTGTGAACCCCGAACTGTGTACGCAGTTCTCCCGC
******************************* *************** ************
HS_haplotype1 CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAGGCTGGGATGGTT
HS_assemblymutate_np1212 CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAAGCTGGGATGGTT
HS_haplotype2 CCGCGCCCCAAAATAAATATATATATAGATGCTACAATCTCAAGCGAAGCTGGGATGGTT
*********************************************** ************
HS_haplotype1 CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC
HS_assemblymutate_np1212 CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC
HS_haplotype2 CCAAACATTCATGATTAATAAGTTATTTATTTCTCAGAAAATCTAAGCTTCTTTGGAGCC
************************************************************
HS_haplotype1 ATTCAGCCTTGTGAATAAATGGCACGCCTCGCCACTCCATAATTTTTTCATCCCTATTTA
HS_assemblymutate_np1212 AATCGGCCTTGTGAATAAATGGCACGCCTCGGCACTCCATAATATTTTCATCCCTATTTA
HS_haplotype2 AATCGGCCTTGTGAATAAATGGCACGCCTCGGCACTCCATAATATTTTCATCCCTATTTA
* ** ************************** *********** ****************
HS_haplotype1 AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGAGTGGAGGGACCACAGGCG
HS_assemblymutate_np1212 AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGAGTGGAGGGACCACAGGCG
HS_haplotype2 AAATGTAACTCCTGAGTCACACTTTGGGGAAACTCTGCAGGAGTGGAGGGACCACAGGCG
************************************************************
HS_haplotype1 TGAGGGAGGATAGACCAGTAGAGTGAAGGCAGGGTGCAGCTAGCAGCCTCGATATTTATG
HS_assemblymutate_np1212 TGAGGGAGGATAGACCAGTAGAGTGAAGGCAGGGTGCAGCTAGCAGCCTCGATATTTATG
HS_haplotype2 TGAGGGAGGATAGACCAGTAGAGTGAAGGCAGGCTGCAGCTAGCAGCCTCGATATTTATG
********************************* **************************
HS_haplotype1 AATCAGTTGGGTAGAACCCAAATGTTGAAGGTGGTGGTTTGGTGCGTGGGGGGGGACAGA
HS_assemblymutate_np1212 AATCAGTTGGGTAGAACCCAAATGTTGAAGGTGGTGGTTTGGTGCGTGGGGGGGGACAGA
HS_haplotype2 AATCAGTTGGGTAGAACCCAAATGTTGAAAGTGGTGGTTTGGTGCGTGGGAGGGGACAGA
***************************** ******************** *********
HS_haplotype1 ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAACAGTATCAGAGTCCCAG
HS_assemblymutate_np1212 ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAAAAGTAGCAGAGTCCCAG
HS_haplotype2 ATACTGACCCATCATGCCCACTGTTCTAGTTTCAACAGACCAAAAGTAGCAGAGTCCCAG
******************************************* **** ***********
HS_haplotype1 GCCAGCTGGCCACCATTCGCCCCTTAGGAGGCAGAGGCAGTGAAGTCACATGATTCTGTC
HS_assemblymutate_np1212 GCCAGCTGGCCACCATCCGCCCCTTAGGAGGCAGAGGCAGCGAAGTCACATGATTCTGTC
HS_haplotype2 GCCAGCTGGCCACCATCCGCCCCTTAGGAGGCAGAGGCAGCGAAGTCACATGGTTCTGTC
**************** *********************** *********** *******
HS_haplotype1 TTATTTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT
HS_assemblymutate_np1212 TTATTTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT
HS_haplotype2 TTAATTCTGTTCTGGGAACTGACCTTTCCCAGGCAAACATTGACATGTATATAAATGGGT
*** ********************************************************
HS_haplotype1 TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGATGCCCCGCCCAGCTC
HS_assemblymutate_np1212 TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGATGCCCCGCCCAGCTC
HS_haplotype2 TTTGAATTTTAATTTTCCTTTTGCCATGAGAGAGAGGCTCAAAGACGCCCCGCCCAGCTC
********************************************* **************
HS_haplotype1 TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA
HS_assemblymutate_np1212 TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA
HS_haplotype2 TAAGTAGCAACTCCTGCTACCCCCAGGCTGGGCTCAAATCAATTTTATTTAGGGAAAGAA
************************************************************
HS_haplotype1 CTAAATTCTTCCCCTCATTGATCAGACAATATTAACACAATGCTGGTTCATTCAAATGGC
HS_assemblymutate_np1212 CTAAATTCTTCCCCTCATTGATCACACAATATTAACACAATACTGGTTCATTCAAATGGC
HS_haplotype2 CTAAATTCTTCCCCTCATTGATCACACAATATTAACACAATACTGGTTCATTCAAATGGC
************************ **************** ******************
HS_haplotype1 AGGAGGGAAGGACAAAGTATGTTCCCTGGCATGCAAAATACAAAATCAAGCAACATAGTA
HS_assemblymutate_np1212 AGGAGGGAAGGACAAAGTATGTTCCCTGGCATGCAAAATACAAAATCAAGCAATATAGTA
HS_haplotype2 AGGAGGGAAGGACAAAGTATGTTCCCTGGCATGCAAAATACAAAATCAAGCAATATAGTA
***************************************************** ******
HS_haplotype1 AATTAGCCAAGCACATCCATTTTATTGGTTTGTAGCTATGTATCCTCACATGAGTCTGGC
HS_assemblymutate_np1212 AATTAGCCAAGCACATCCATTTTATTGGTTTGTAGCTATGTATCCTCACATGAGTCTGGC
HS_haplotype2 AATTAGCCAGGCAGATCCATTTTATTGGTTTGTAGCTATGGATCCTCACATGAGTCTGGC
********* *** ************************** *******************
HS_haplotype1 TCGCAGTGAGCATTCATTAAAACCTGGTGGCGTGCTGTCAGAACTGGCCCTGCCTTAGCA
HS_assemblymutate_np1212 TCGCAGTGAGCATTCATTAAAACCTGGTGGCGTGCTGTCAGAACTGGCCCTGCCTTAGCA
HS_haplotype2 TCGCAGTGAGCATTCATTAAAACCTGGTGGCATGCTGTCAGAACTGGCCCTGCCTTAGAA
******************************* ************************** *
HS_haplotype1 CAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT
HS_assemblymutate_np1212 CAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT
HS_haplotype2 AAGCTGTGAATAATAACACTCACTCATTTTAAAAGTGAGCTCCCGACTTTTTACATACTT
***********************************************************
HS_haplotype1 CACTAGCCTACAGTGCTGAGGTGTAGTCTTACTTTGTTTGATTGTAGTCGGAGCATTACA
HS_assemblymutate_np1212 CTCTAGCCTACAGTGCTGAGGTGTAGTCTTACTTTGTTTGATTGTAGTCGGAGCATTACA
HS_haplotype2 CTCTAGCCTACAGTGCTGAGGTGTAGTCATACTTTGTATGATTGTAGTCGGAGCATTACA
* ************************** ******** **********************
HS_haplotype1 ACACAGACGAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC
HS_assemblymutate_np1212 ACACAGACTAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC
HS_haplotype2 ACACAGACTAAGGGGGCTCCACTGCCATACTGGCTCTAAGTAGCTGCTATGTACACAGCC
******** ***************************************************
HS_haplotype1 ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG
HS_assemblymutate_np1212 ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG
HS_haplotype2 ACACCCCCAACGTATTTAATTTTTCATGGAGCTTTCTGTATTTGTTTTATGTATTGGAAG
************************************************************
HS_haplotype1 AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGCCACTCTGAGGTCACACTGAGGCTTGT
HS_assemblymutate_np1212 AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGCCACTCTGAGGTCACACTGAGGCTTGT
HS_haplotype2 AAAAGGGCGGCCTAAGCGGCTCGAGAGTACTTGGCACTCTGAGGTCACACTGAGGCTTGT
********************************* **************************
HS_haplotype1 CCCTGGCCACTGAAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT
HS_assemblymutate_np1212 CCCTGGCCACTGAAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT
HS_haplotype2 CCCTGGCCACTGAAACTGTAGTTTTTTGCTTTACCCGGTTTCATTTACAAAGTACTTTCT
************************************************************
HS_haplotype1 TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCTTGCCATAGAAA
HS_assemblymutate_np1212 TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCATGCCATAGAAA
HS_haplotype2 TTATTGTAGAGAGGGTATATATAGAAAAACTTGTTTTTTATGTCCACCATGCCATAGAAA
************************************************ ***********
HS_haplotype1 CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC
HS_assemblymutate_np1212 CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC
HS_haplotype2 CCTATATACCATGGGACTCAATATAAAAAGTGATTATAGTCCAGAGGGAATTATTGATAC
************************************************************
HS_haplotype1 GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACATAGCACT
HS_assemblymutate_np1212 GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACAGAGGACT
HS_haplotype2 GGATGGGGTGACGGATGCATATCCACCACGTCCCCGTATGTTTAATTTTGACAGAGGACT
***************************************************** ** ***
HS_haplotype1 GAGCGGTAATTTCACAGGGTGCTGGGGGATGCCATCTGTAAAGAACAGATGAGCAAACAC
HS_assemblymutate_np1212 GAGCGGTATTTTCACAGGGTGCTGGGGGATGCCATCTGTAAATAACAGATGAGCAAACAC
HS_haplotype2 GAGCGGTATTTTCACAGGGTGCTGGGGGATGCCATCTGTAAATAACAGATGAGCAAACAC
******** ********************************* *****************
HS_haplotype1 ACATCTGACAGGTAAGTGGCTCAAGCAGAGGTTTCACTGCGACAGACTGCGCTCACTTGT
HS_assemblymutate_np1212 ACATCTGACAGGTACGTGGCTCAAGCAGAGGTTTCACTGCGACAGACTGCGCTCACTTGT
HS_haplotype2 ACATCTGACAGGTACGTGGCTCAAGCAGAGGTTTCACTGCGACAGACTGCGCTCACTTGT
************** *********************************************
HS_haplotype1 TACAGGCTCAAAAATAAGAAGTCTCTCTCTGCTGATTTGATCTAAATGCTCTCTAGTCTA
HS_assemblymutate_np1212 TACAGGCTCAAAAATAAGAAGTCTCTCTATGCTGATTTGATCTAAATGCTCTCTAGTCTA
HS_haplotype2 TACAGGCTCAAAAATAAGAAGTCTCTCTATGCTGATTTGATCTAAATGCTCTCTAGCCTA
**************************** *************************** ***
HS_haplotype1 ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACTAATGTGCTCGGCCCCC
HS_assemblymutate_np1212 ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACTAATGTGCTCGGCCCCC
HS_haplotype2 ATAATAAATCCCACGATATCTGGGTAATCTCCCCATGTGTTACAAATGTGCTCGGCCCCC
******************************************* ****************
HS_haplotype1 AGGAGCGGAGCAAAAGGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT
HS_assemblymutate_np1212 AGGAGCGGAGCAAAAGGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT
HS_haplotype2 AGGAGCGAAGCAAAAGGTTGAAACTGCTCACCGTGCATGGGCTTATATACCAAGCTGAAT
******* ****************************************************
HS_haplotype1 GTGGGACTTCTCACCACCATCCCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT
HS_assemblymutate_np1212 GTGGGACTTCTCACCACCATACCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT
HS_haplotype2 GTGGGACTTCTCACCACCATACCATCTTGGCCAAAGCAGAGGCACTGAACTTTTTCATCT
******************** ***************************************
HS_haplotype1 TCTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTC
HS_assemblymutate_np1212 ACTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTC
HS_haplotype2 ACTATCAAGCACTTTGGCTCCTAAATGTTTCCACCAAGTTGGACTAAGTAGAGATTTTTC
***********************************************************
HS_haplotype1 TACCCACAGCTACCTCATGCTGTCAGTATATATGGGGTGAAACCGAAGGAAGAATCGGGA
HS_assemblymutate_np1212 TACCCACAGCTACCTCATGCTGTCAGTATATATGGGGTGAAACCGAAGGAAGAATCGGGA
HS_haplotype2 TACCCACAGCTACCTCATGCTGTCAGTATATATGGGGTGAAACCGAAGGAAGAATCGGGA
************************************************************
HS_haplotype1 GCTCTTGGACCATCCGCCTCATCTGATCCAGCCTCTCAGGGACTGGCAGTGGCTCAGTGT
HS_assemblymutate_np1212 GCTCTTGGGCCATCCGCCTCATCTGATCCAGCCTCTCAGGGACTGGCAGTGGCTCAGTGT
HS_haplotype2 GCTCTTGGGCCATCCGCCTCATCTGATCCAGCCTCTCAGGGACTGGCAGTGGCTCAGTGT
******** ***************************************************
HS_haplotype1 TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG
HS_assemblymutate_np1212 TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG
HS_haplotype2 TAAAAGAGCAGGTGGCTATATTTATTCTGAGTGATGGTACTGATGAGCTGAAATAGCTGG
************************************************************
HS_haplotype1 TCCCTTGGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTTGTGTGCATTCC
HS_assemblymutate_np1212 TCCCTTAGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTTGTGTGCATTCC
HS_haplotype2 TCCCTTAGATGCACTTGGCTTCCTTCGTCCCAAGTTTCACACAGCTCTCGTGTGCATTCC
****** ***************************************** ***********
HS_haplotype1 AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGAGTGGG
HS_assemblymutate_np1212 AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGAGTGGG
HS_haplotype2 AAAGTTTTTACTTACAAAGCGTTTTGGCAGGAGTCCCCAAGTTTATAATACCAGTGTGGG
****************************************************** *****
HS_haplotype1 CGAAATTTGGTGTGGCCCCCATGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG
HS_assemblymutate_np1212 CGAAATTTGGTGTGGCCCCCATGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG
HS_haplotype2 CGAAATTTGGTGTGGCCCCCATGTGGTGGAGAGCTTTTAAACAGTGGCGACCCCTTGAAG
************************************************************
HS_haplotype1 TCCTTCAGCTCCTGATGAGGTTTGACCAAACACTAGCTAACTAAATTAATGTAGAAAGCC
HS_assemblymutate_np1212 TCCTTCAGCTCCTGGTGAGGTTTGACCAAACACTAGCAAACTATATTAATGTAGAAAGCC
HS_haplotype2 TCCTTCAGCTCCTGGTGAGGTTTGACCAAACACTAGCAAACTATATTAATGTAGAAAGCC
************** ********************** ***** ****************
HS_haplotype1 TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATAAAATAAACTATGAGATGTC
HS_assemblymutate_np1212 TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATACAATAAACTATGAGATGTC
HS_haplotype2 TTAGTCAATATATAAAAATAGTAATCCATTTCCTTTGTATACAATAAACTATGAGATGTC
***************************************** ******************
HS_haplotype1 GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC
HS_assemblymutate_np1212 GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC
HS_haplotype2 GGTACAGGCTGGAAGCACAGGGGCCCTGCCGCCACCCAGTTCTGTCCTGGCGAGAGATTC
************************************************************
HS_haplotype1 TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA
HS_assemblymutate_np1212 TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA
HS_haplotype2 TTTGTATATTAAGACTTCAGTATGTGAAGTGATGTTGTTAATATGTCCAGTGACCATGCA
************************************************************
HS_haplotype1 ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA
HS_assemblymutate_np1212 ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA
HS_haplotype2 ATGGAAACGAGCAAGGACCCAGGCGACACATAGACTCCAGAGGTTCCGGCCGCGTTTTGA
************************************************************
HS_haplotype1 GGGGTAAATAGGGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA
HS_assemblymutate_np1212 GGGGTAAATAGGGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA
HS_haplotype2 GGGGTAAATAGCGTGATCCAGAGAAGGCCAGTTTCGTTGTAAGTGAGCTTATTTATTTGA
*********** ************************************************
HS_haplotype1 ATTTTCCCTGGTACAGTATTGGTGAGCCTGACCCTCCGCCTGGGTTCCCCAGACCCTGTC
HS_assemblymutate_np1212 ATTTTCCCTGGTACAGTATTGGTGAGCCTGACCCTCCGCCTGGGTTCCCCAGACCCTGTC
HS_haplotype2 ATTTTCCCTAGTACAGTATTGGTGAGCCTGACCCTCCGCCTGGGTTCCCCAGACCCTGTC
********* **************************************************
HS_haplotype1 TCTGAGACCAGGTTCTATCAAAATCCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT
HS_assemblymutate_np1212 TCTGAGACCAGGTTCTATCAAAATCCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT
HS_haplotype2 TCAGAGACCAGGTTCTACCAAAATCCAGCCTGGCAATGAAGAGGGGGCAAGTTGCCGAGT
** ************** ******************************************
HS_haplotype1 AAATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA
HS_assemblymutate_np1212 AAATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA
HS_haplotype2 ACATTTCCAACTGTGTGGTAGCTGGAGGTGACAGCTCGTTCCCTGAGTTCCTTTCCCCTA
* **********************************************************
HS_haplotype1 ATCTTCGCCTCAAAACGTGGGAGGGTAATATCAACATAGGCAAGAGCTCACTGGCCTCAG
HS_assemblymutate_np1212 ATCTTCGCCTCAAAACGTGGGAGGGTAACATCAACATAGGCAAGAGCTCACTGGCCTCAG
HS_haplotype2 ATCTTGGCCTCAAAACGTGGGAGGGTAACATCAACATAGGCAAGAGCTCACTGGCCTCAG
***** ********************** *******************************
HS_haplotype1 GCTGGGTATACTATGTGAGGCTCGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA
HS_assemblymutate_np1212 GCTGGGTATACTATGTGAGGCTCGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA
HS_haplotype2 GCTGGGTAAACTATGTGAGGCTTGCGCCCGCTCCCTTCTGTTTCCAGGTAGTCTCGGAGA
******** ************* *************************************
HS_haplotype1 CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG
HS_assemblymutate_np1212 CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG
HS_haplotype2 CTCTGTACGTTACTGCACGCCTGTGCCCCTCTGGAAGAATGAGCATTTAGAGAGCTCCTG
************************************************************
HS_haplotype1 GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTGAATAAATGTCTGTGCATACTT
HS_assemblymutate_np1212 GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTTAATAAATGTCTGTGCATACTT
HS_haplotype2 GAGGTTTACAGCTAATAGAGAAATGGAGACCCTGATTTTAATAAATGTCTGTGCATACTT
************************************** *********************
HS_haplotype1 CACCCACTCCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG
HS_assemblymutate_np1212 CACCCACTGCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG
HS_haplotype2 CACCCACTGCGTTTCTAAGAAAATAAACTCATGATTAACCTCCTTGGGCAGGTGGGGGCG
******** ***************************************************
HS_haplotype1 CCCTAAAGGCGTGAGATTTAACTCAGGCCCCAAATATGACGTGTCAAATTTATGGTATCT
HS_assemblymutate_np1212 CCCTAAAGGCGTGAGATTTAACTCAGGCCCCAAATATGACGTGTCAAATTTATGGTATCT
HS_haplotype2 CCCTAAAGGCGTGAGATTTAACACAGGCCCCATATATGACGTGTCAAATTTATGGTATCT
********************** ********* ***************************
HS_haplotype1 AGGGGACATCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG
HS_assemblymutate_np1212 AGGGGACATCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG
HS_haplotype2 AGGGGACGTCCTCTCTCTGGTAGTCTTTTTCATTTTCCAATTTAAATAATTGCTGGGGAG
******* ****************************************************
HS_haplotype1 AGACTTGGACAGGGAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGTA
HS_assemblymutate_np1212 AGACTTGGACAGGGAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGTA
HS_haplotype2 AGACTTGGACAGGAAGGAAAAAAATGGATCAGTAAAACATGAATAAGACAGGCCCCTGTA
************* **********************************************
HS_haplotype1 ATCCAAGCAGTAAACTGGGGGTTGGCTTAAGACTGCTGGGCACCCTCATGCTAATTACAA
HS_assemblymutate_np1212 ATCCAAGCAGTAAACTGGGGGTTGGCTTAAGACTGCTGGGCACCCTCATGCTAAGTACAA
HS_haplotype2 ATCCAAGCAGTAAACTGGGGGTTGGCTTAAGACTGCTGGGCACCCTCATGCTAAGTACAA
****************************************************** *****
HS_haplotype1 CCCGCGTGTGGCTGGGCTGCTCCAAAACCACCCCTCGCTTATCCAGGAATTGGACTCAGT
HS_assemblymutate_np1212 CCCGCGAGTGGCTGGGCTGCTCCAAAACCGCGCCTCGCTTATCCGGGAATTGGACTCAGT
HS_haplotype2 CCCGCGAGTGGCTGGGCTGCTCCAAAACCGCGCCTCGCTTATCCGGGAATTGGACTCAGT
****** ********************** * ************ ***************
HS_haplotype1 GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA
HS_assemblymutate_np1212 GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA
HS_haplotype2 GACCACGGAGTTCACCTCACGCCTTCATCCATTTCCCCTGACCAGCTACTTCAATTAGGA
************************************************************
HS_haplotype1 CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACTGA
HS_assemblymutate_np1212 CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACGGA
HS_haplotype2 CACAGAATAAGCCCTTAGGTTTCAATGTCTTTAACAGATGCTTTCTGGGAGGAGCACGGA
********************************************************* **
HS_haplotype1 GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTTGGAGATAAAAGAGA
HS_assemblymutate_np1212 GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTAGGAGATAAAAGAGA
HS_haplotype2 GAGAGAGACATTCCCCTCGTGGGGGTAGATGTTGGGCTCTTACCTAGGAGATAAAAGAGA
********************************************* **************
HS_haplotype1 GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG
HS_assemblymutate_np1212 GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG
HS_haplotype2 GGAGGCCCCGAGTTCCACCGATTGATAGGTAAAAAAATAATAACAGACAGAGGTTCATCG
************************************************************
HS_haplotype1 CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA
HS_assemblymutate_np1212 CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA
HS_haplotype2 CAGAAAAAAGTGAGTTCAGATTACAGAGTGTGTCAGGGAAGGGGGGACAGGCCCGGCCCA
************************************************************
HS_haplotype1 ATAAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATACTACTAC
HS_assemblymutate_np1212 ATAAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATACTACTAC
HS_haplotype2 ATCAGTAATATTTGGACCAGAATGAATGGGATCACTTTGTTTTGTTTTCTATGCTACTAC
** ************************************************* *******
HS_haplotype1 ATGTGATCAGAATTGTTGGAAGGTGCGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC
HS_assemblymutate_np1212 ATGTGATCAGAATTGTTGGAAGGTGAGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC
HS_haplotype2 ATGTGATCAGAAATGTTGGAAGGTGAGATTGGAAACTAACTCAAAGAAAGGGTGGCTTCC
************ ************ **********************************
HS_haplotype1 ACCAAGTGCTTTTCCTCTCTCCCTGCTCGGGCCTGTGTCTCACCCAAAAACCTTACTCAA
HS_assemblymutate_np1212 ACCAAGTGCTTTTCCTCTCTCCCTGCCCGGGCCTGTGTCTCACCCAAAAACCTTACTGAA
HS_haplotype2 ACCAAGTGCTTTTCCTCTCTCCCTGCCCGGGCCTGTGTCTCACCCAAAAACCTTACTGAA
************************** ****************************** **
HS_haplotype1 AATATTTTTTTTTCAGTTTCCACTGGGCGCAGCCACTCCTGGGCAAAGCATACTGAGAGC
HS_assemblymutate_np1212 AATATTTTTTTTTCAGTTTCCACTGGGCGCAGCCACTCCTGGGCAAAGCATACTGAGAGC
HS_haplotype2 AATATTTTTTTTTCAGTTTCCACTGGGCGCAGCCACTCCTGGGCAAAGCATACTGAGAGC
************************************************************
HS_haplotype1 AGCATCCATAATCTACGCTGGGCACTGTAACCCTTGAGGACCATCTCTGGCCTGAGTGCA
HS_assemblymutate_np1212 AGCATCCATAATCTACGCTGGGCACTGTAACCCTTGAGGACCATCTCTGGCCTGAGTGCA
HS_haplotype2 AGCATCCATAATCTACGCTGAGCTCTGTAACCCTTGAGGACCATCTCTGGCCTGAGTGCA
******************** ** ************************************
HS_haplotype1 ATAAAGTCTAAGTAGTAACACTCCTCCTCAGTATCCAGGAGAAAGGTTTAATGCTCATCA
HS_assemblymutate_np1212 ATAAAGTCTAAGTAGTAACACTCCTCCTCAGTATCCAGGAGAAAGGTTTAATGCTCATCA
HS_haplotype2 ATAAAGTCTAAGTAGTAACACTCCTCCTCAGTATCCAGGAGAAAGGTTTAATGCTCATCA
************************************************************
HS_haplotype1 GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT
HS_assemblymutate_np1212 GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT
HS_haplotype2 GCGCCTGTGATGGCTGTTTTTATAGTGATTGAGGCTGCCTGCCTCAAAAAAGCCTAGGTT
************************************************************
HS_haplotype1 TATTATCCCGCTCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA
HS_assemblymutate_np1212 TATTATCCCGCCCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA
HS_haplotype2 TATTATCCCGCCCTTCGCGCGTGGCCAGGCTGTCCTGGAGTCGGCGGCATGTACAAGGGA
*********** ************************************************
HS_haplotype1 AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT
HS_assemblymutate_np1212 AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT
HS_haplotype2 AAAGACCCTAACTGCAGGTTCTATAATTACAAAGTATTGACAAGATTGAGGTTCAATAAT
************************************************************
HS_haplotype1 GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT
HS_assemblymutate_np1212 GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT
HS_haplotype2 GTTAGAGATGAAATTTTATTTTGATGTTTTTCAGACGAATACTTAACTATTTTTTCTACT
************************************************************
HS_haplotype1 ATAAAAAACTGGATATCTCAGCTCACCTGGTTGCATAGTAGAATGGGGGACGAGATACTT
HS_assemblymutate_np1212 ATAAAAAACTGGATATCTCAGCTCACCTGGTTTCATAGTAGAATGGGGGACGAGATACTT
HS_haplotype2 ATAAAAAACTGGATATCTCAGCTCACCTGGTTTCATAGTAGAATGGGGGACGAGATACTT
******************************** ***************************
HS_haplotype1 TTTTTTCTATACTCCTGCCCTTCATTAAGTAGATTTGCCTCCCATCTTGGTCATCTGAAG
HS_assemblymutate_np1212 TTTTTTCTATACTCCTGCCCTTCATTAAGTAGTTTTGCCTCCCATCTTGGTCATCTGAAG
HS_haplotype2 TTTTTTCTATACTCCTGCCCTTCATTAAGTAGTTTTGCCTCCCATCTTGGTCATCTGAAG
******************************** ***************************
HS_haplotype1 GAAGCTCATCTGTGGCAAAATAGGCAGAGTTCCTTGGATTTGTGAGAAGTAACAGCCTCA
HS_assemblymutate_np1212 GAAGCTCATCTGTGGCAAAATAGGCAGAGTTCCTTGGATTTGTGAGAAGTAACAGCCTCA
HS_haplotype2 GAAGCTCATCTGAGGCAAAATAGGCAGAGGTCCTTGGATTTGTGAGAAGTAACAGCGTCA
************ **************** ************************** ***
HS_haplotype1 CAACCTTAAGATGGAGGAAAAAATTGCTCAGAGATGATATATTTCTTTTGTTTAACTCAT
HS_assemblymutate_np1212 CAACCTTAAGATGGAGGAAAAAATTGCTCAGAGATGATATATTTCTTTTGTTTAACTCAT
HS_haplotype2 CAACCTTAAGATGGAGGAAAAAATTGCTCAGAGATGATATATTTCTTTTGTCTAACTCAT
*************************************************** ********
HS_haplotype1 CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACATAGCCCTTTTCTA
HS_assemblymutate_np1212 CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACATAGCCCTTTTCTA
HS_haplotype2 CTCAATGTAAAGTCTACAGCCGAGTGAGTAAATTATACAAAAAAACCTAGCCCTTTTCTA
********************************************** *************
HS_haplotype1 TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC
HS_assemblymutate_np1212 TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC
HS_haplotype2 TATTTCTCAAAACATCAGCTATATCACATGCATAGCTAATTCAGACTTAAAGCAACCAGC
************************************************************
HS_haplotype1 GTTGTTTCTCCTGAAAATCATCCCTTGAATTACACACCCCTAGCTAATCCTTTCACGAAA
HS_assemblymutate_np1212 GTTGTTTCTCCTGAAAATCATCCCTTGAATTACACACCCCTAGCTAATCCTTTCACGAAA
HS_haplotype2 GTTGTTTCTCCTGAAAATCATGCCTTGAATTACACACCCCTAGCTAATCCTTTCACGAAA
********************* **************************************
HS_haplotype1 CTATGAATGATAGTAGCTTTTTTTGAGCAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC
HS_assemblymutate_np1212 CTATGAATGATAGTAGCTTTTTTTGAGCAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC
HS_haplotype2 CTATGAATGATAGTAGCTTTTTTTGAGCAATGAGTGTCTAGAAAATCAGGGCGAAGCCCC
************************************************************
HS_haplotype1 TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATCCAGCAATGACTTTTATGTAATG
HS_assemblymutate_np1212 TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATCCAGCAATGACTTTTATGTAATG
HS_haplotype2 TGTATCTGTGCCGAGGCGGATTCTCCTGGAGCTACATTGAGCAATGTCTTTTATGTAATG
************************************* ******* *************
HS_haplotype1 TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC
HS_assemblymutate_np1212 TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC
HS_haplotype2 TGTTTTGGTGCTGTAGGGAAAGACAGCCACTCCTTCGGATGGAATGGTTGGAGGTCTCTC
************************************************************
HS_haplotype1 CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT
HS_assemblymutate_np1212 CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT
HS_haplotype2 CTAGGTTCCCTCCCCCCACCAACAAAATTTCAGCTGAGAAATTCTTTCATGACTTTTCCT
************************************************************
HS_haplotype1 CCTCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA
HS_assemblymutate_np1212 CCCCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA
HS_haplotype2 CCCCCTCCCTAGACAGGGACCACGCTCCAGCCCTTTTCAGATGACATTTGCTTCTCAGAA
** *********************************************************
HS_haplotype1 TGAATTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACACCTGCCTCTGCAG
HS_assemblymutate_np1212 TGACTTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACACCTCCCTCTGCAG
HS_haplotype2 TGACTTCAAGCAGCAGAGCAATGTCTTAGGCAGTCCACCTGGAAACACCTCCCTCTGCAG
*** ********************************************** *********
HS_haplotype1 GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATGGAGCCTGTATTGGAGAATAATT
HS_assemblymutate_np1212 GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATGGAGCCTGTATTGGAGAATAATT
HS_haplotype2 GTACCTTATGCTGTGCCAGTGATGGAGTCTTTAAAATTGAGCCTGTATTAGAGAATAATT
************************************* *********** **********
HS_haplotype1 TGTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG
HS_assemblymutate_np1212 TGTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG
HS_haplotype2 TTTTTTCTGCCAAAGGATTTTTGTTATATTCTTTAAATGTAAAAATGAACATTTCAGCTG
* **********************************************************
HS_haplotype1 GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC
HS_assemblymutate_np1212 GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC
HS_haplotype2 GAAGCATCTCTCCTGCCCTTTTAAAAAAATGCTTGGCCTCAAATATATTAAATATCAAAC
************************************************************
HS_haplotype1 GGTGGGGCACCTCTGGATTGATCCAAATGAATATTTATATTTGCATCAAATCTGGAAATA
HS_assemblymutate_np1212 GGTGGGGCACCTCTGGATTGATCCAAATGAATATTTATATTTGCATCAAATCTGGAAATA
HS_haplotype2 GGTGGGGCACCTCTAGATTGATCCAAATGAATATTTATATTTGCATCAAATCTGGAACTA
************** ****************************************** **
HS_haplotype1 CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA
HS_assemblymutate_np1212 CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA
HS_haplotype2 CATCACAGTCTAGGATGGTCAGGAGTTATGTGATCCTCAGCTCTTGTCTCCAGACCTGGA
************************************************************
HS_haplotype1 GTGAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT
HS_assemblymutate_np1212 GTCAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT
HS_haplotype2 GTCAATAAAATCCACGTGCCTCTTTATGATTCTTGGTGAGGACATGGCAGCACTCTACAT
** *********************************************************
HS_haplotype1 ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG
HS_assemblymutate_np1212 ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG
HS_haplotype2 ATGAGTTGTTTTTGTTAAATTTTTTTGTTGCTGGCCTCCTCAGGCTGAGGCTCATTTAAG
************************************************************
HS_haplotype1 ATCCTTCCATGACACTGCTTATGTTGTGAGACGGCTCACTAAGTATGAAGAATTAGGTGA
HS_assemblymutate_np1212 ATCCTTCCATGACACTGCTTATGTTGGGAGACGGCTCACTAAGTATGAAGAATTAGGTGA
HS_haplotype2 ATCCTTCCATGACACTGCTTATGTTGGGAGACGGCTCACTAAGTATGAAGAATTAGGTGA
************************** *********************************
HS_haplotype1 CGAAGATGTGATTAGTTTTATTTAATTGCTCGACAGATAAGGACCGCAAACATGGTTTCT
HS_assemblymutate_np1212 CAAAGATTTGATTAGTTTTATTTAATTGCTCGACAGATACGGACCGCAAACATGGTTTCT
HS_haplotype2 CAAAGATTTGATTAGTTTTATTTAATTGCTCGACAGATACGGACCGCAAACATGGTTTCT
* ***** ******************************* ********************
HS_haplotype1 TTTTTTACAGGCTCCTGTGTTTCGTTTACAGAAGCTTATCTACCTTCAAGTAAAAGGCTC
HS_assemblymutate_np1212 TTTTTTACAGGCTCCTGTGTTTCTTTTACAGAAGCTTATCTACCCTCAAGTAAAAGGCTC
HS_haplotype2 TTTTTTACAGGCTCCTGTGTTTCTTTTACAGAAGCTTATCTACCCTCAAGTAAAAGGCTC
*********************** ******************** ***************
HS_haplotype1 ACGCCTGGCTTAGTAGAGAAAAATTGCCGGGCGCGCGCCATGGACGCACGGTCAGGCTGG
HS_assemblymutate_np1212 ACGCCTGGCTTAGTAGAGAAAAATTGCCGGGCGCGCGCCATGGACGCACGGTCAGGCTGG
HS_haplotype2 ACGCCTGGCTTAGTAGAGAAAAATTGCCGGGCGCGCGCCATGGACGCACGGTCAGGCTGG
************************************************************
HS_haplotype1 GCGCGGTTCATGAGAGTCTTCAAGGCAACTTTGACTGTGATCCAAATACTTAACTTCGGA
HS_assemblymutate_np1212 GCGCGGTTCATGAGAGTCTTCAAGGCAACTCTGACTGTGATCCAAATACTTAACTTCGGA
HS_haplotype2 GCGCGGTTCATGAGAGTCTTCAAGGCAACTCTGACTGTGATCCAAATACTTAACTTCGGA
****************************** *****************************
HS_haplotype1 CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG
HS_assemblymutate_np1212 CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG
HS_haplotype2 CGAAGACAAGAAACAATATTCTTCCAGTCTCCTTTTTAGAATATCTTCGGCCGGGAACTG
************************************************************
HS_haplotype1 CTATCTGCTTTGCCTGCTAATTTTTTCTGAGCTGTTTATGTATTTCCTGCAGAGCATGCT
HS_assemblymutate_np1212 CTATCTGCTTTGCCTTCTAATTTTTTCTGAACTGTTTATGTATTTCCTGCAGAGCATGCT
HS_haplotype2 CTATCTGCTTTGCCTTCTAATTTTTTCTGAACTGTTTATGTATTTCCTGCAGAGCATGCT
*************** ************** *****************************
HS_haplotype1 CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGACATCTGGGTCTCAAC
HS_assemblymutate_np1212 CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGTCATCTGGGTCTCAAC
HS_haplotype2 CCTTCATGTAGTTGTAATGATGATTTAGTCCACCTCACCAGATGTCATCTGGGTCTCAAC
******************************************** ***************
HS_haplotype1 CTTCAACTGACCTCCAACTTATGGGGGCTTCCGGCTGGAAAAACTAGATCCAGCTAGGGC
HS_assemblymutate_np1212 CTTCAACTGACCTCCAACTTATGGGGGCTTCCGGCTGGAAAAACTAGATCCAGCTAGGGC
HS_haplotype2 CTTCAACTGACCTCCAACTTATGGGGGCTTCCGGCTGGAAAAACTAGATCCAGCTAGGGC
************************************************************
HS_haplotype1 TGGATTACACAAAGACTTTGCAGTCCCCAACACCATCTCCCTGAGGCCCTTTTACTGGGA
HS_assemblymutate_np1212 TGGATTACACAAAGACTTTCCAGTCCCCAACTCCATCTCCCTGAGGCCCTTTTACTGGGA
HS_haplotype2 TGGATTACACAAAGACTTTCCAGTCCCCAACTCCATCTCCCTGAGGCCCTTTTACTGGGA
******************* *********** ****************************
HS_haplotype1 AAAAGTCACCCCCTCTCCCAAGGGTTCCTTTAGTACCCGGGCGGAGGGTTTAGGTGACGG
HS_assemblymutate_np1212 AAAAGTCACCCCCTCTCCCAAGGGTTCCCCTAGTACCCGGGCGGAGGGTTTAGGTGACGG
HS_haplotype2 AAAAGTCACCCCCTCTCCCAAGGGTTCCCCTAGTACCCGGGCGGAGGGTTTAGGTGACGG
**************************** ******************************
HS_haplotype1 ATTGTATGGTACACTGCTTTAGTAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA
HS_assemblymutate_np1212 ATTGTATGGCACACTGCTTTAGTAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA
HS_haplotype2 ATTGTATGGCACACTGCCTTAGAAAGGAAGAAGTCAGGAAATTAGAAAAGAGTGGTCGAA
********* ******* **** *************************************
HS_haplotype1 CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG
HS_assemblymutate_np1212 CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG
HS_haplotype2 CAGGTGTACCAGAGAACCTGGCTGTGATCCAAAGAAACTCGGCTGTGACTTAGGGTTCAG
************************************************************
HS_haplotype1 ACGGGCACTGGAGTTGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC
HS_assemblymutate_np1212 ACGGGCACTGGAGTGGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC
HS_haplotype2 ACGGGCACTGGAGTGGGGCTGCTATATACAGCTACAAAACTCCACACCCGCCGAGTTACC
************** *********************************************
HS_haplotype1 TGGATAAAAAAGGTTGTTTGGAATCTTTTTCCAGCTTTTTGTGCAGTTTCTCCATTCTCA
HS_assemblymutate_np1212 TGGATAAAAAAGGTTGTTTGGAATCTTTTTCCAGCTTTTTGTGCAGTTTCTCCATTCTCA
HS_haplotype2 TGGATAAAAAAGGTTGTTTGGAATCTTTTTCCAGCTTTTTGTGCAGTTTCTCCATTCTCA
************************************************************
HS_haplotype1 TTGCATGATGTTTCAAGCAAACTTGGGTCTATGTGCCTGCAAGGAAGGAAATAAAATTTG
HS_assemblymutate_np1212 TTGCATGATGTTTCAAGCATACTTGGGTCTATGTGCCTGCAAGGATGAAAATAAAAATTG
HS_haplotype2 TTGCATGATGTTTCAAGCATACTTGGGTCTATGTGCCTGCAAGGATGAAAATAAAAATTG
******************* ************************* * ******** ***
HS_haplotype1 AGATAAGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG
HS_assemblymutate_np1212 AGATACGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG
HS_haplotype2 AGATACGCAGAGCAACCTTGTATTGAGAAAACAATGACTAACTCAGCTCTGCCGGGCTGG
***** ******************************************************
HS_haplotype1 TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG
HS_assemblymutate_np1212 TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG
HS_haplotype2 TTGTCTTGGCTCAAAGAATACTTCTGTTCTTGATTGACATAACAAAATGAGATATCTGGG
************************************************************
HS_haplotype1 ACGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT
HS_assemblymutate_np1212 ATGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT
HS_haplotype2 ATGATACAAGAAAAAAATTGTCTGGACAGAGCCTAACATATCCATTCAGAGTGTTAAAGT
* **********************************************************
HS_haplotype1 CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA
HS_assemblymutate_np1212 CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA
HS_haplotype2 CTCAGCACACTCGGAGTAGATTCAGTGCTGCAGAAATCCAACTGCTGGGAGTCTACTAAA
************************************************************
HS_haplotype1 AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA
HS_assemblymutate_np1212 AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA
HS_haplotype2 AAGAAAATCCCCAGCCCTCCTGGGCTGGTCTTGGCTCAGAGCCTCCTTGAGATGGCTCAA
************************************************************
HS_haplotype1 GTAGCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG
HS_assemblymutate_np1212 GTATCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG
HS_haplotype2 GTATCAATGAGTGAATAAAAGAAAAAAGGTGATCTCACTTTTAAAAGCAACCTTGGTGGG
*** ********************************************************
HS_haplotype1 ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGACATGGAGGCCTCGGTCAAAGAAGC
HS_assemblymutate_np1212 ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGAGATGGAGGCCTCGGTCAAACAAGC
HS_haplotype2 ATGCACTTACAAACCAATAAAAGCACCGTGTTCTGAGATGGAGGCCTCGGTCAAACAAGC
************************************ ****************** ****
HS_haplotype1 ATTTTATGCAACTAAATGGTTGTGCTGTGAGCCAGAAGCTATGTGCCACCCAAATAAAAC
HS_assemblymutate_np1212 ATTTTATGCGACTAAATGGTTGTGCTGTGAGCCAGAAACTATGTGGCACCCAAATAAAAC
HS_haplotype2 ATTTTATGCGACTAAATGGTTGTGCTGTGAGCCAGAAACTATGTGGCACCCAAATAAAAC
********* *************************** ******* **************
HS_haplotype1 GGAGCAAGGCCTCCAGCAGACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGCAATGT
HS_assemblymutate_np1212 GGAGCAAGGCCTCAAGCAGACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGCAATGT
HS_haplotype2 GGAGCAAGGCCTCAAGCAGACCAGTGGCCTGTTGAATTCTTATCCTATAATAGGAAATGT
************* **************************************** *****
HS_haplotype1 GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCCCCAAATATGAG
HS_assemblymutate_np1212 GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCCCCAAATATGAG
HS_haplotype2 GGCCTGCCAGGAACTCCGTTGGGAGGGCCCGGGACCCAGCCTCTGCTCTCCAAATATGAG
************************************************ ***********
HS_haplotype1 GCATTTATTTCTCCTTCAAAATAAGTACTACCATCCTCCCTGGGCCTAAATCCCTTCTCC
HS_assemblymutate_np1212 GCATTTATTTCTCCTTCAAAATAAGTACTACCATCCTCCCTGGGCCTAAATCCCTTCTCC
HS_haplotype2 GCATTTATTTCGCCTTCAAGATAAGTACTACCATCCTCCCTGGGCCTAAATCCATTCTCC
*********** ******* ********************************* ******
HS_haplotype1 ACAGAGGTCACCCGGGGTAGGATTGGCCAAAGGCTCGCGCCCGGGCGCACCGCGGTACTT
HS_assemblymutate_np1212 ACAGAGGTCACCCGGGGTAGGATTGGCCAAAGGGTCGCGCCCGGGCGCACCGCGGTACTT
HS_haplotype2 ACAGAGGTCACCCAGGGTAGGGTTGGCCAAAGGGTCGCGCCCGGGCGCACCGCGGTACTT
************* ******* *********** **************************
HS_haplotype1 AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATCGCTGGCCAACACCCAGTCAAG
HS_assemblymutate_np1212 AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATTGCTGGCCAACACCCAGTCAAG
HS_haplotype2 AATAATCGATCTAAACTCCCCCACTTAAAAGCCAGTATTGCTGGCCAACACCCAGTCAAG
************************************** *********************
HS_haplotype1 TACAGTGAGTCTTGAATAGTAGACCAAATCGTGTACGGGAGTTGAAAAATGAAGATCCAG
HS_assemblymutate_np1212 TGCAGTGAGTCTTGACTAGTAGACCAGATCGTGTACGTGAGTTGAAAAATGAAGATCCAG
HS_haplotype2 TGCAGTGAGTCTTGACTAGTAGACCAGATCGTGTACGTGAGTTGAAAAATGAAGATCCAG
* ************* ********** ********** **********************
HS_haplotype1 CCTTCCTCGTGAGGCAGGAGAGAACAAGGGACATATTATTATGTAACTGGAAGCTACTGG
HS_assemblymutate_np1212 CCTTCTTCCTGAGGCAGGAGAGAACAAGGGACATATTATAATGCAACTGGAAGCTACTGG
HS_haplotype2 CCTTCTTCCTGAGGCAGGAGAGAACAAGGGACATATTATAATGCAACTGGAAGCTACTGG
***** ** ****************************** *** ****************
HS_haplotype1 GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATGATACCATTCCAG
HS_assemblymutate_np1212 GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATCATACCATACCAG
HS_haplotype2 GAGAAAATCCTTCTTCAAGACAGTAAAGAGCCAGACAAACTTCACATCATACCATACCAG
*********************************************** ******* ****
HS_haplotype1 ATACTTGCATTTCATTATTTATTTTTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG
HS_assemblymutate_np1212 ATACTTGCATTTCATTATTTATTTCTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG
HS_haplotype2 ATACTTGCATTTCATTATTTATTTCTCTAAGGTCAGCCGGGTCTGGGTTTTCATGTGCTG
************************ ***********************************
HS_haplotype1 CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAAACAG
HS_assemblymutate_np1212 CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAATCAG
HS_haplotype2 CTTCCCTCCTTTGGAAACCAGAAATTGCTCCTGTCTTTATTTTCTCAGCCCTGAAATCAG
******************************************************** ***
HS_haplotype1 GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT
HS_assemblymutate_np1212 GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT
HS_haplotype2 GAAATAAAGTGCTGCGAAAAGAAAATATCCCACACCACCATAATTGTTGTGTATTTATTT
************************************************************
HS_haplotype1 TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA
HS_assemblymutate_np1212 TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA
HS_haplotype2 TGTTTTCCTTGGACACATTAAAAATGGACAGGCGAGGGCTCTGCTTCAGATTTCTTTCTA
************************************************************
HS_haplotype1 ACAAAACGTTTTCCAATTCCTCTTCTCCCATTATGAGATGATGGGGTAAACTAGCTCCTT
HS_assemblymutate_np1212 ACAAAACGTTTTCCAATGCCTCTTCTCACATTATGAGATGATGGGGTAAACTAGCTCCTT
HS_haplotype2 ACAAAACGTTTTCCAATGCCTCTTCTCACATTATGAGATGATGGGGTAAACTAGCTCCTT
***************** ********* ********************************
HS_haplotype1 GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA
HS_assemblymutate_np1212 GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA
HS_haplotype2 GTACCTCTTTTGTAAATTTTTTTAATCCCAGCTCACTCCCCATTTCACTATTACTAACCA
************************************************************
HS_haplotype1 TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA
HS_assemblymutate_np1212 TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA
HS_haplotype2 TTGAGGGGAAGATGCGGGAGCAGCAATGTCTGACCCATTCCCGGGATTCTATAAATGCAA
************************************************************
HS_haplotype1 GGAATGGGAATAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGAATAACATTTAA
HS_assemblymutate_np1212 GGAATGGGAAAAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGTATAGCATTTAA
HS_haplotype2 GGAATGGGAAAAACTGAACTCTGAGATCAAAACAGGTGGAAAGGAATGTATAGCATTTAA
********** ************************************* *** *******
HS_haplotype1 AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCATATTTGGTTAATT
HS_assemblymutate_np1212 AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCAAATTTGGTTAATT
HS_haplotype2 AGTGAGTTGATACTGGGCTCCAGGGATTAAAAGAAGGACCTCAGTCAAATTTGGTTTATT
*********************************************** ******** ***
HS_haplotype1 AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG
HS_assemblymutate_np1212 AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG
HS_haplotype2 AGTTTTAACTCCATGAAACACCCGAGGCTGGCGTGAGGAGATTTTAATTGCTTTTCAGCG
************************************************************
HS_haplotype1 TCTGTCTCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG
HS_assemblymutate_np1212 TCTGTCTCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG
HS_haplotype2 TCTGTCCCTTCCTCACTGCATAGAATTGCTGGGGATCGCCCGGATCCAAGAAAAGAACAG
****** *****************************************************
HS_haplotype1 TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAACACTCTGTTTTGAT
HS_assemblymutate_np1212 TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAGCACTCTATTTTGAT
HS_haplotype2 TATGGCAGGAGTCCTAGGGCCGGGACCACTTCAGGGAAAAAAGCAGCACTCTATTTTGAT
********************************************* ****** *******
HS_haplotype1 TACATCAGAGGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT
HS_assemblymutate_np1212 TACATCAGAGGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT
HS_haplotype2 TACAACAGAGGGCACCACATAAATGGTGCGCGGTTCCTTTTCACATTTTAGGGGCAGCTT
**** *******************************************************
HS_haplotype1 GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT
HS_assemblymutate_np1212 GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT
HS_haplotype2 GATTGTATATGAGACCCCACCAAAAAGCTATTCAGTAAACCCCAGCAGATAGGACCCCCT
************************************************************
HS_haplotype1 CTGTGTTGCAGTGCATCTTATATGACTAGAATGCTAATTATCTATCGATCTACAGGAGAT
HS_assemblymutate_np1212 CTGTGTTGCAGTGCATCTTATATGACTAGAATGCTAATTATCTATCGATCTACAGGAGAT
HS_haplotype2 TTGTATTGCAGTGCATCTTAGATGACTTGAATGCTAATTATCTATCGATCTACAGGAGAT
*** *************** ****** ********************************
HS_haplotype1 TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT
HS_assemblymutate_np1212 TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT
HS_haplotype2 TTTTATGTATGGCCTCGGAACGGAGGGGCTCATCCTAGATTTACAATTTCTGGTCTTCAT
************************************************************
HS_haplotype1 CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT
HS_assemblymutate_np1212 CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT
HS_haplotype2 CTAACAGACAGGTGAACAACCCGCCTCGGATTCTCAGTAAACAAATGATATTGAATATAT
************************************************************
HS_haplotype1 ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA
HS_assemblymutate_np1212 ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA
HS_haplotype2 ATTAAAACTTTCACTTTTGCAAAGAGAATCAAGTTTTGTTTTCAGACTTGCAGCTTATTA
************************************************************
HS_haplotype1 CAGACCGACTGACCTGTCTTGCTCTGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCAA
HS_assemblymutate_np1212 CAGACCGACTGACCTGTCTTGCTCTGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCAA
HS_haplotype2 CAGACCGACTGACCTGTCTTGCTCAGTTGCCGGTGGCAGCCTATAGCAACTGTGAGGCAA
************************ ***********************************
HS_haplotype1 ATGTCCTTCTCACTTGATATATAAATACGGTTCAGTTTTACTGCAATGGTTGTGGCAGAA
HS_assemblymutate_np1212 ATGTCCTTCTCACTTGATATATAAATACGGTTCAGTTTTACTGCAATGGTTGTGGCAGAA
HS_haplotype2 ATGTCCTTCTCACTTGATATATAAATACGGTTCAGTTTTACTGCAATGGTTGTGGCAGAA
************************************************************
HS_haplotype1 GGTACAGCCTCACTGGAAGTATTGCTGGACCTAATTGAATACACGAGCTCAGAACTCACG
HS_assemblymutate_np1212 GGTACAGCCTCACTGGAAGTATTACTGGACCTAATTGAATACACGAGCTCAGATCTCACG
HS_haplotype2 GGTACAGCCTCACTGGAAGTATTACTGGACCTAATTGAATACACGAGCTCAGATCTCACG
*********************** ***************************** ******
HS_haplotype1 CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG
HS_assemblymutate_np1212 CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG
HS_haplotype2 CCTGTATTAAGCAGAGACAGGGCTCTTAGCTTTATAATTAGAGACACATCATATTACTTG
************************************************************
HS_haplotype1 GTGTGTTTGCAAGCTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGTGG
HS_assemblymutate_np1212 GTGTGTTTGCAAGCTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGAGG
HS_haplotype2 GTGTGTTTGCAAACTCCCACTCCTATTCACCAAGAACAAAGGAAAAGTAGTGGGTTGAGG
************ ******************************************** **
HS_haplotype1 TGCCTGGGGAGGAAATCAAATGGGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA
HS_assemblymutate_np1212 TGCCTGGGGAGGAAATCAAATGGGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA
HS_haplotype2 TGCCTGGGGAGGAAATCAAATGAGAGGAGGGTCCAATACATATCAGTCTCAAACTCCAGA
********************** *************************************
HS_haplotype1 CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTTTTGTTCTTAC
HS_assemblymutate_np1212 CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTTTTGTTCTTAC
HS_haplotype2 CTTCCAATCTATTCAGCCGCAAAGAAAAGAACAGGCAACATAAAACTGTCTTGTTCTGAC
************************************************* ******* **
HS_haplotype1 ACCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTCTGATCAGTAGCTGACTTATTTTTGT
HS_assemblymutate_np1212 ACCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTCTGATCAGTAGCTGACTTATTTTTGT
HS_haplotype2 AGCAACAAGGGAGGCATTCTCTAGGAGGCTGAGTGTGATCAGTAGCTGACTTATTTTTGT
* ******************************** *************************
HS_haplotype1 TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCTGGCCATGA
HS_assemblymutate_np1212 TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCTGGCCATGA
HS_haplotype2 TCTCTTGAGGCCAATTAATAGTAAAACTAGTGAGATTTTAGACAAGCCACCCGGCCGTGA
*************************************************** **** ***
HS_haplotype1 CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT
HS_assemblymutate_np1212 CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT
HS_haplotype2 CAACCAAACCCAAAGTCTAAACTTCTGTGATCTACCAGTAGCTGGAAATTTATTTCAGAT
************************************************************
HS_haplotype1 CAACTACAGGTTACCATCAGTCCCTGGGCATAAAATGCAGACAGCAAGCACTCCCTATGT
HS_assemblymutate_np1212 CAACTACAGGTTACCATCAGTCCCTGGGCATAAAATTCAGACAGCAAGCACTCCCTCTGT
HS_haplotype2 CAACTACAGGTCACCATCAGACCCTGGGCATAAAATTCAGACAGCAAGCACTCCCTCTGT
*********** ******** *************** ******************* ***
HS_haplotype1 AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA
HS_assemblymutate_np1212 AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA
HS_haplotype2 AGGTTAAAAATTACAAAGCTGTTCAGACTTGGGCAGGCTGGGCCGGGGAGGGGAGTGTCA
************************************************************
HS_haplotype1 AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTGATGTTCAGTCTTCTA
HS_assemblymutate_np1212 AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTTATGTTCAGTCTTCTC
HS_haplotype2 AAGGCCCTGGCCTCATTGAAAGTACTTTAGCATCAACTGTAATTTATGTTCAGTCTTCTC
******************************************** **************
HS_haplotype1 CACCTCAATACCTGATTGAGACCACAGAGAAGTATGGGGGCTGTGGTAGCCGGCCTTGCA
HS_assemblymutate_np1212 CACCTCAATACCTGATTGAGATCACAGAGAAGTATGGGGGCTGTGGTAGCCAGCCTTGAA
HS_haplotype2 CACCTCAATACCTGATTGAGATCACAGAGAAGTATGGGGGCTGTGGTAGCCAGCCTTGAA
********************* ***************************** ****** *
HS_haplotype1 AAAAAAACAAACTTATTTTAAAGTAGCAATCAAGGCCCTCTGCCTCTTTAAGCCATTCGG
HS_assemblymutate_np1212 AAAAAAACAAACTTATTTTAAAGTAGCAATCAAGGCCCTCTGCCTCTTTAAGCCATTCGG
HS_haplotype2 AAAAAAACAAACTTATTTTAAAGTAGCAAGCAAGGCCCTCTGCCTCTTTAAGCCATTCGG
***************************** ******************************
HS_haplotype1 GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG
HS_assemblymutate_np1212 GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG
HS_haplotype2 GAGAATCCCAGCTTACTGTAATCATTTTGTCTTTAATTCAGTTTGTTTCCTGTGTGTTGG
************************************************************
HS_haplotype1 CTGCCACCACCGCGCGTGACTGGGGGTGGGAGTGTAAACATGCGAGTAGACACCTGGATT
HS_assemblymutate_np1212 CTGCCACCACCGCGCGTGACTGGGGGTGCGTGTGTAAACATGCGAGTAGACACCTGTATT
HS_haplotype2 CTGCCACCACCGCGCGTGACTGGGGGTGCGTGTGTAAACATGCGAGTAGACACCTGTATT
**************************** * ************************* ***
HS_haplotype1 CTTGCTTCCCGGCTGTTCCTTCCTTGAAGTATTTTACAATTATTCAACAACCTGGTGGCA
HS_assemblymutate_np1212 CTTGCTTCCCGGCTGTTCCTTCCTTGATGTATTTTACAATTATTCAACATCCTTCTGGCA
HS_haplotype2 CTTGCTTCCCGGCTGTTCCTTCCTTGATGTATTTTACAATTATTCAACATCCTTCTGGCA
*************************** ********************* *** *****
HS_haplotype1 TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATGCAGATGATC
HS_assemblymutate_np1212 TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATGCAGATGATC
HS_haplotype2 TGAAAAAGCTCACAAATGTATTTGTATTAATTCTTCCCATCTATTTGAATTCAGATGATC
************************************************** *********
HS_haplotype1 ATGGTGCCCTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT
HS_assemblymutate_np1212 ATGGTGCCCTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT
HS_haplotype2 ATGGTGCACTGCAGTGTGGGCGCTCTGGAACAGTGGGGCGCCGGGTGGATGGGAATATTT
******* ****************************************************
HS_haplotype1 CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC
HS_assemblymutate_np1212 CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC
HS_haplotype2 CTCAAATCCATTCATTCTATCTTTAAGACTTGTCTTGCTGGAGATAATTGTTACTCTTTC
************************************************************
HS_haplotype1 ATCAACCCATTTGTAATATCGAGACCTGTAATTTCAGTTGTTACAGAAGTCTATGCAGAG
HS_assemblymutate_np1212 ATCAACCCATTTGTAATATCGAGACCTGTAATTTCAGTTGTTACAGAAGTCTATGCAGAG
HS_haplotype2 ATCAACCCATTTGTAATATCGAGACCTGTAATGTCAGTTGTTACAGAAGTCTATGCAGAG
******************************** ***************************
HS_haplotype1 GATTCTACAAACCTATTTTTATTTAAATCCAACAAACGGGCGGGCTCAGGATTACTTCTC
HS_assemblymutate_np1212 GATTCTACAAACCTATTTTTATTTAAATCCAACAAACGGGCGGGCTCAGGATTACTTCTC
HS_haplotype2 GATTCTACAAACCTAATTTTATTTAAATCCAACAAACGGGCGGGCACAGGATTACTTCTC
*************** ***************************** **************
HS_haplotype1 CCTCAAGGCCTCGGCACTCAAGGGATGGTATGGCTGGCGCCCTGCCTCCGGGCATAGGCT
HS_assemblymutate_np1212 CCTCAAGGCCTCGGCACTCAAGGGATGGTATGGCTGGCGCCCTGCCTCCGGGCATAGGCT
HS_haplotype2 CCTCAAGGCCTCGGTACTCAAGGGATGGTATGGCTGGCGCCCTGCCTCCGGGCATGGGCT
************** **************************************** ****
HS_haplotype1 GAGTCACCTGTGTTTTCTATTTTACAAGTGAAATTTATAATGAGATAGTGGGTAGACCAC
HS_assemblymutate_np1212 GAGTCACCTGTGTTTTCTATTTTACAAGTGAAATTTATAATGAGATAGTGGGTAGACCAC
HS_haplotype2 GAGTCACCTGGGTTTTCTATTTTACAAGTGAAATTTATAATGAGAAAGTCGGTAGACCAC
********** ********************************** *** **********
HS_haplotype1 TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCCCCATGTTGCCAGACCCAGTTAC
HS_assemblymutate_np1212 TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCGCCATGTTGCCAGACCCAGTTAC
HS_haplotype2 TGGGTAGGGCACATTAATTAGCTGGATCACGCACGCCGCCATGTTGCCAGACCCAGTTAC
************************************* **********************
HS_haplotype1 AATAGCTGAGGTTAACAGCTAAGGGAGCGTTGGAGACGGAGAAACAGCACTGGAGAATGA
HS_assemblymutate_np1212 AATAGCTGAGGTTAACAGCTAAGGGAGAGTTGGAGACTGAGAAACAGCACTGGAGAATGA
HS_haplotype2 AATAGCTGAGGTTAACAGCTAAGGGAGAGTTGGAGACTGAGAAACAGCACTGGAGAATGA
*************************** ********* **********************
HS_haplotype1 AGAATAATATAACAAATCTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG
HS_assemblymutate_np1212 AGAATAATATAACAAATCTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG
HS_haplotype2 AGAATAATATAACAAATCTACAATGTCATTGGGAAGGCGCGGCGTTGTTAACAAAGTGGG
************************************************************
HS_haplotype1 GCGCCCCCTCTGAACTGCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGATCTGCTAC
HS_assemblymutate_np1212 GCGCCCCCTCTGAACTGCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGATCTGCTAC
HS_haplotype2 GCGCCCCCTCTGAACTGCGTGCCGGCCGAGTGCCTGTCAATTTAAACCCCGATCTGCTAC
************************************************************
HS_haplotype1 CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG
HS_assemblymutate_np1212 CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG
HS_haplotype2 CCCCACCTCTCCAGGCAATCCCAGAGTTTAACTAAACATTCTAAAATTGGAGATGAACAG
************************************************************
HS_haplotype1 CAGAGTAGCCAGGGTATCCACCTTGCAGGCCCGGGAGCATAGGTTTTCATTAACCTCCCC
HS_assemblymutate_np1212 CAGAGTAGCCAGGGTATCCATCTTGCACCCCCGGGAGCATAGGTTTTCATTAACCTCCCC
HS_haplotype2 CAGAGTAGCCAGGGTATCCATCTTGCACCCCCGGGAGCATAGGTTTTCATTAACCTCCCC
******************** ****** *******************************
HS_haplotype1 AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCCGATTC
HS_assemblymutate_np1212 AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCAAATTC
HS_haplotype2 AGTCCTACCTTTCCTTTGCTAAGTTAGATATAGCAACCAGTGGCAAATAAATGCAAATTC
****************************************************** ****
HS_haplotype1 TGTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTCA
HS_assemblymutate_np1212 TCTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTAA
HS_haplotype2 TCTGACCACGCCCCGCCATCTGGGGAAAGGATCCCCAGCCGTTGGTTTTTGGGGGTCTAA
* ******************************************************** *
HS_haplotype1 TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA
HS_assemblymutate_np1212 TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA
HS_haplotype2 TGGCACGTGATAAAGTTGAATACCTTTTCATAGACAACTTATGTGGGGAACACAAGCTGA
************************************************************
HS_haplotype1 TGGGCCTTCATAATGAAGTTGTTTAGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG
HS_assemblymutate_np1212 TGGGGCTTCATAATGAAGTTGTTTAGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG
HS_haplotype2 TGGGGCTTCATAATGAAGTTGTTTGGGGGTGCGTGCCTCGGTTAAAGAAAATCGCTCAGG
**** ******************* ***********************************
HS_haplotype1 AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGATCCTTTTTTGCAG
HS_assemblymutate_np1212 AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGCTCCTTTTTTGCAG
HS_haplotype2 AGAACTTATCTAAAGCCCCGCCCGTCTCCTAAAAAACCCTGGGAAGCTCCTTTTTTGCAG
********************************************** *************
HS_haplotype1 CATAGTGTATTCAATGTGATGACTGGGACTGTGAAATACAAGAGACCCAAAGCGAGCCAC
HS_assemblymutate_np1212 CATAGTGTATTCAATGTGATGACTGGGACTGTGAAATACAAGAGACCCAAAGCGAGCCAC
HS_haplotype2 CATAGTGTATTCAATGTGATGACTGAGACTGTGAAATATAAGAGACCCAAAGCGAGCCAC
************************* ************ *********************
HS_haplotype1 ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCACTCGTTTGAAGAATGCA
HS_assemblymutate_np1212 ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCACTCGTTTGAAGAATGCA
HS_haplotype2 ACAATTTAATGTTGTACATCGACGGGTGTGCTGAGGCCATGCAATCGTTTGAAGAATGCA
******************************************* ****************
HS_haplotype1 GCAGCAAACAAACCCTACTTGAAAGTTACCTCATTATGTCTTATTGCTACAGCAAAAGCC
HS_assemblymutate_np1212 GCAGCAAACAAACCCTACTTGAAAGTTACCTCATTATGTCTTATTGCTACAGCAAAAGCC
HS_haplotype2 GCAGCAAACAAACCCTACTTGAATGTTACCTCATTATGTGTTATTGCTACAGCAAAAGCC
*********************** *************** ********************
HS_haplotype1 AACGACCGGCACCCCAACCGTGGCTTCATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA
HS_assemblymutate_np1212 AACGACCGGCACCCCAACCGTGGCTTCATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA
HS_haplotype2 AACGACCGGCACCCCAACCTTGGCTTCATGCAGCTCTTGGCAGTGATGGGCAGGAGGCCA
******************* ****************************************
HS_haplotype1 AACTCACCATACAGAGGGATTAAACTGAAGAGTCTTAACAGGGAGTGAGTGGAGGTGAGG
HS_assemblymutate_np1212 AACTCACCATACAGAGGGATTAAACTGAAGAGTCTTAACAGGGAGTGAGTGGAGGTGAGG
HS_haplotype2 AACTCACCATTCAGAGGGATTAAACTGAAGAGTCTTGACAGGGAGTGAGTGGAGGTGGGG
********** ************************* ******************** **
HS_haplotype1 GGAGCCCAGCCATCAGTTTGATGACTTTTCCCTTATGACTGTTGCCCGGGCGGGTGGTCT
HS_assemblymutate_np1212 GGAGCCCAGCCATCAGTTTGATGACTTTTCCCTTATGACTGTTGGCCGGGCGGGTGATCT
HS_haplotype2 GGAGCCCAGCTATCAGTTTGATGACTTTTCCCTTATGACTGTTGGCCGGGCGGGTGATCT
********** ********************************* *********** ***
HS_haplotype1 GAAACCAAATTTGATTCTCAAACATGTGTCAGTAATTTAAAAGGAGGGACTTTACTGAGA
HS_assemblymutate_np1212 GAAACCAAATTTGATTCTCAAACATGTGTCAGTAATTCAAAAGGAGGGACTTGACTGAGA
HS_haplotype2 GAAACCAAATTTGATTCTCAAACATGTGTCAGTAATTCAAAAGGAGGGACTTGACTGAGA
************************************* ************** *******
HS_haplotype1 TGATTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC
HS_assemblymutate_np1212 TGCTTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC
HS_haplotype2 TGCTTCAAACCCCGGGTGAGCATCATGCTGCACTCCAGGCAGTACCAATGTATTTCTGGC
** *********************************************************
HS_haplotype1 TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTTATGG
HS_assemblymutate_np1212 TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTGATGG
HS_haplotype2 TTAACTAGCCCCAGTGGTAGCGTGGGGCATTAACTAAGCACGAAAAACTGAATGTGATGG
******************************************************* ****
HS_haplotype1 ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAATGATGGGGGGGGTGGAATAAAGC
HS_assemblymutate_np1212 ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAATGATGGGGGGGGTGGAATAAAGC
HS_haplotype2 ATGATATTTTGTTCAGCTGCCTTGCTGAGGCTGAAAAGGATGGGGGGGGTGGAATAAAGC
************************************* **********************
HS_haplotype1 ATTTCTCACTTGATAAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC
HS_assemblymutate_np1212 ATTTCTCACTTGATCAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC
HS_haplotype2 ATTTCTCACTTGATCAAAACAGATCCCAGCGGGTGTATTAAAATATAGTCCCCCTCCAGC
************** *********************************************
HS_haplotype1 TAGAGGGTCAGTCTGTAAGCATTCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG
HS_assemblymutate_np1212 TAGAGGGTCAGTCTGGAATCATGCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG
HS_haplotype2 TAGAGGGTCAGTCTGGAATCATGCCATAAAGAAAAGGCAGAGACAATTTCATTTTTCATG
*************** ** *** *************************************
HS_haplotype1 AGCCCCAAACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA
HS_assemblymutate_np1212 AGCCCCATACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA
HS_haplotype2 AGCCCCATACTAAATTGTATTCATCCCTCCTTTTTACAGCTACTGAAGGAAGGTACAGCA
******* ****************************************************
HS_haplotype1 GCATTAAAACCCCTTGGTTCATAGCATTTAAGAGTAGTACACAGGTCAAACAAAATTTTC
HS_assemblymutate_np1212 GCATTAAAACCCCTTGGTTCATAGCATTTATGAGTAGTACCCAGGTCAAACAAAATTTTC
HS_haplotype2 GCATTAAAACCCCTTGGTTCATAGCATTTATGAGTAGTACCCAGGTCAAACAAAATTTTC
****************************** ********* *******************
HS_haplotype1 CCAAAAATATATGAGTGGGGGGTCAGACATTGCCTTCTGTAGTTAAGTGTAGGTAGCACG
HS_assemblymutate_np1212 CCAAAAATATATGAGTGGGGGGTCAGACATTGCCCTCTGTAGTTAAGTGTAGGTAGCACG
HS_haplotype2 CCAAAAATATATGAGTGGGGGGTCAGACATTGCCCTCTGTAGTTAAGTGTAGGTAGCACG
********************************** *************************
HS_haplotype1 TAAGACTAAGTCTCCCTTTCCCTGATTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT
HS_assemblymutate_np1212 TAAGACTAAGTCTCCCTTTCCCTGCGTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT
HS_haplotype2 TAAGACTAAGTCTCCCTTTCCCTGCGTTCAGATGAGACCATTTGAGTAGAGCCTGATTAT
************************ **********************************
HS_haplotype1 CAATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC
HS_assemblymutate_np1212 CTATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC
HS_haplotype2 CTATCATATCACGCAGCCTCCATGGGAGAGAGAGGCGCAGAATTTCCTCTTCACTGCAGC
* **********************************************************
HS_haplotype1 CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTTATGGTGTGGC
HS_assemblymutate_np1212 CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTTATGGTGTGGC
HS_haplotype2 CTGCAGACAATCTAGAAGAGCATAAGTTGTGACATAGTAGAAAACACTTAATGGTGTGGC
************************************************* **********
HS_haplotype1 TGATCATTCTATCAAGGACATATGATGTCACTGCCTCATTTGTAACTTATCTCCATAGTC
HS_assemblymutate_np1212 TGATCATTCTATCAAGGACATATGATGTCACTGCCGCATTTGTAACTTATCTCCATAGTC
HS_haplotype2 TGATGATTGTCTCAAGGACATATGATGTCACTGCCGCATTTGTAACTTATCTCCATAGTC
**** *** * ************************ ************************
HS_haplotype1 TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCTAGACTCAAGCCCCTTTCTT
HS_assemblymutate_np1212 TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCTAGACTCAAGCCCCTTTCTT
HS_haplotype2 TGGGCTACAGTCTCATCCTTAGCCCTTCTTCATCCTCCGCTAGACTCAAGCCCCTTTCTT
************************************************************
HS_haplotype1 CTTGTTTGGAGGGGCAAGCCAAGTGTCAGTCCCAGGAGGCATTGGAACAAGTATCCTTAA
HS_assemblymutate_np1212 CTTGTTTGGAGGGGCAAGCCAAGTGTCAGTCCCAGGAGGCATTGGAACAAGTATCCTTAA
HS_haplotype2 CTTGTTTGGAGGGGCAAGCCAAGTGTCAGTCCCAGGAGGCATTGGAACAAGTATCCTTAA
************************************************************
HS_haplotype1 GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA
HS_assemblymutate_np1212 GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA
HS_haplotype2 GTTTGGGACTGGTCAAAATTTTTTTTCTTTTTTCTGACCAAAATTTAGCATCATGAGGCA
************************************************************
HS_haplotype1 GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCAGGCTGGGGA
HS_assemblymutate_np1212 GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCAGGCTGGGGA
HS_haplotype2 GGAGTAGCTAGCTTTTTGATAATGACTGACACAAGCTGAGACTCTGAGGCTGGGTGGGGA
************************************************** ** ******
HS_haplotype1 TCACATCTCCTCAGTGATGGTGGTAGGGCACCATCTAGATGGGGGTCGTGGTACACTGCT
HS_assemblymutate_np1212 TCACATCTCCTCAGTGATGGTGGTAGGGCACCATCTAGATGGGGGTCGTGGTACACTGCT
HS_haplotype2 TCACATCTCCTCAGTGATGGTGGTAGGGCACCATCTAGATGGGGGTCGTGGTACACTGCT
************************************************************
HS_haplotype1 GGGGCCTTTCTGGAGTTCATAAAGATACTTGGCTCCGGGAGCTACTCCCAAAGACCATCC
HS_assemblymutate_np1212 GGGGCCTTTCTGGAGTTCATAAAGATACTTGGCTCCGGGAGCTACTCCCAAAGACCATCC
HS_haplotype2 GGGGGCTTTCTGGAGTTCATAAAGATACTTGGCTCCGGGAGCTACTCCCAAAGACCATCC
**** *******************************************************
HS_haplotype1 ATAATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGTGGCCCGCCC
HS_assemblymutate_np1212 ATAATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGAGGCCCGCCC
HS_haplotype2 ATAATTAAATTATTTCCTTTAAAATGCACCTGAGGTTCCTTTCTATAACGAGGCCCGCCC
************************************************** *********
HS_haplotype1 AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA
HS_assemblymutate_np1212 AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA
HS_haplotype2 AGAAGTAACTCCTGAGCGGAGGTGAGGCCGGGCATAGGATGAACATTTTATCCCATTACA
************************************************************
HS_haplotype1 AAAGAAAAGTTGCTCTGTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG
HS_assemblymutate_np1212 AAAGAAAAGTTGCTCTTTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG
HS_haplotype2 AAAGAAAAGTTGCTCTTTCAGATATGTGTGGGAAGTTACAACTGACATTTGAACTTGAAG
**************** *******************************************
HS_haplotype1 AAGGAAGTCCCATCACTGATCTGGGAAAACAGTCAATGTTTGAGTAGAAGATAAAACTCA
HS_assemblymutate_np1212 AAGGAAATCCCGTCACTGATCTGGGAAAGCAGTCAATGTTTGAGTAGAAGATAAAACTCA
HS_haplotype2 AAGGAAATCCCGTCACTGATCTGGGAAAGCAGTCAATGTTTGAGTAGAAGATAAAACTCA
****** **** **************** *******************************
HS_haplotype1 GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTAACAAACAAGGAGGGTA
HS_assemblymutate_np1212 GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTTACAAACAAGGAGGGTA
HS_haplotype2 GAGGTGCTAGGCACTAGTCTCTCTAGTTATAATCCCCCGAGGTTACAAACAAGGAGGGTA
******************************************* ****************
HS_haplotype1 GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGTGATTTTGAAATACATGATCCTGAC
HS_assemblymutate_np1212 GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGGGATGTTGAAATACATGATCCTGAC
HS_haplotype2 GGGCCGCCAAAGCTCCCCTGGTGCCGGATCATCAGGGATGTTGAAATACATGATCCTGAC
*********************************** *** ********************
HS_haplotype1 ATTATACCAATGCAAGATCATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT
HS_assemblymutate_np1212 ATTATACCAATGCAAGATTATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT
HS_haplotype2 ATTATACCAATGCAAGATTATTGTTTTCTGTTACAATGAGTAGGCAGCTAATAGTGTGCT
****************** *****************************************
HS_haplotype1 CAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT
HS_assemblymutate_np1212 GAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT
HS_haplotype2 GAGGAGAGAAATCTGGGGGGATTGCTTGGTCTACTCCACCAGAAAGGAAACAAAAATCCT
***********************************************************
HS_haplotype1 ACACAAAATTTTTGTTCCAGAGACAGACGAGTTTCAAAACTTGCCCTGGCATGGTTATGC
HS_assemblymutate_np1212 AGACAAAATTTTTGTTCCAGAGACAGACGAGTTTCAAAAATTGCCCTGGCATGGTGATGC
HS_haplotype2 AGACAAAATTTTTGTTCCAGAGACAGACGAGTTTCAAAAATTGCCCTGGCATGGTGATGC
* ************************************* *************** ****
HS_haplotype1 TCCTGGGCGGCGCCCTCTGTCCTCCCCATCGCTAGCAATGTGCTGTGGGCCTATGGGGTC
HS_assemblymutate_np1212 TCCTGGGCGGCGCCCTCTGTCCTCCCCATCGCTAGCAATGTGCTGGGGGCCTATGGGGTC
HS_haplotype2 TCCTGGGCGGCGCCATATGTCCTCCCCATCGCCAGCAATGTGCTGGGGGCCTATGGGGTC
************** * *************** ************ **************
HS_haplotype1 TCCCTACCCACTTATTCAAAAGGTCAGGTTCTCGCCCAGGCGTGTTTCATCATTTGAAGG
HS_assemblymutate_np1212 TCCCTACCCACTTATTCAAAAGGTCAGGTTCTCGCCCAGGCGTGTTTCATCATTTGAAGG
HS_haplotype2 TCCCTACCCTCTTATTCAAAAGGTCAGGTTCTCGCCCAGGCGTGTTTCATCATTTGAAGG
********* **************************************************
HS_haplotype1 CATGGACCAGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAAAATAAAGAGTCTGGC
HS_assemblymutate_np1212 CATGGACCAGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAAAATAAAGAGTCTGGC
HS_haplotype2 CATGGACCAGTGCCTCCAACAAAACAGTTTGTTATGGAGATAGAAAATAAAGAGTCTGGC
************************************************************
HS_haplotype1 CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTTTAGTGGACA
HS_assemblymutate_np1212 CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTTTAGTGGACA
HS_haplotype2 CAGCAAGTCAAAGTATGCTCAGTACCAGAGCAGGAGGCGGGGGCCCACTTATAGTGGACA
************************************************** *********
HS_haplotype1 TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGACGGCCGAAGG
HS_assemblymutate_np1212 TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGACGGCCGAAGG
HS_haplotype2 TTTTCTTCAGCCAGGGGAAGAAATGCTGTGACGTCATGCTCAGTGGGTGGCAGCCGAAGG
************************************************* * ********
HS_haplotype1 CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG
HS_assemblymutate_np1212 CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG
HS_haplotype2 CTAATTAAATCTGCAACGGCCACCCTAATTTGAGCAAGTCATCTGCAAATAGTTCTGCTG
************************************************************
HS_haplotype1 GCAGAGCCCACCCAAAGCATCTGTTCTAAAGCACATCCGGGGCAGCTAATTCTAAAAAAA
HS_assemblymutate_np1212 GCAGAGCCCACCCAAAGCATCTGTTCTAAAGCACATCCGGGGCAGCTAATTCTAAAAAAA
HS_haplotype2 GCAGAGCCCTCCCAAAGCATCTGTTCTAAAGCACATGCGGGGCGGCTAATTCTAAAAAAA
********* ************************** ****** ****************
HS_haplotype1 ACTGGCTTGAAGACAGAGCAGCATCTCTCATGATGCCCAATCCCAATGGGTTTGGCTTAC
HS_assemblymutate_np1212 ACTGGCTTGAAGACAGAGCAGCATCTCTCATGATGCCCAATCCCAATGGGTTTGGCTTAC
HS_haplotype2 ACTGGCTTGAAGACAGAGCAGCATCTCTGATGATGCCCAATCCCAATGGGTTTGGCTTAC
**************************** *******************************
HS_haplotype1 TGGCGAGAGGTATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT
HS_assemblymutate_np1212 TGGCGAGAGGTATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT
HS_haplotype2 TGGCGAGAGGCATCTGATATGTTTCAGCTGGGACAGGGGTTTCCTTCAGTTACGTTTACT
********** *************************************************
HS_haplotype1 TATGGCGCACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC
HS_assemblymutate_np1212 TATGGCGCACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC
HS_haplotype2 TATGGCACACCCACTGCTGTGGGTTTGAATGTGATCTGTAGAAGGTAAAGTGCTTTTAAC
****** *****************************************************
HS_haplotype1 ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAAGATAAACCA
HS_assemblymutate_np1212 ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAGGATAAACCA
HS_haplotype2 ATAGCCCCTTGATATGCCCTCAACCTGGAGCAAGGGGGACTCCTTTTATAGGATAAACCA
************************************************** *********
HS_haplotype1 CAAAATTCTTACAGATCTTCAGACTTGCATCACATGTGCCTCATGCCTCACCCAGACATA
HS_assemblymutate_np1212 CAAAATTCTTACAGATCTTCAGACTTGCATCACATGTGCCTCATGCCTCACCCAGACATA
HS_haplotype2 CAAAATTCTTACAGATCTTCAGACTTGCACCACATGTGCATCATGCCTCACCCAGACATA
***************************** ********* ********************
HS_haplotype1 TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCATGTATCCTCACT
HS_assemblymutate_np1212 TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCATGTATCCTCACT
HS_haplotype2 TCCTCCCCACTGAGGTATACAAGTACCCAATAGGTACAAAAAGATGCAAGTTTCCTCACT
************************************************ ** ********
HS_haplotype1 GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG
HS_assemblymutate_np1212 GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG
HS_haplotype2 GGGAGGCTTCAAAGATCGACCTGACTCCGCCACATGGATATATGAGAAGAGCGAGACTGG
************************************************************
HS_haplotype1 CCTCACGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA
HS_assemblymutate_np1212 CCTCCCGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA
HS_haplotype2 CCTCCCGGAGACATTAACAAACACCGCACCCAGATGATCTCATATTTTTGTCATTATGTA
**** *******************************************************
HS_haplotype1 AACGACCTCAATGCAGAATTCAGAGCTCCGGTGATGTTGAACGGCTCGAGATCAAGTCCA
HS_assemblymutate_np1212 AACGACCTCAATGCAGAATTCAGAGCTCAGGTGATGTTGAACCGCTCGAGATCAAGTCCG
HS_haplotype2 AACGACCTCAATGCAGAATTCAGAGCTCAGGTGATGTTGAACCGCTCGAGATCAAGTCCG
**************************** ************* ****************
HS_haplotype1 CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA
HS_assemblymutate_np1212 CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA
HS_haplotype2 CCAGTCCGAACTTAAATCTGATAAATGTAGAGAATTCATCTTTTGTTTGAACGCTCTCCA
************************************************************
HS_haplotype1 CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAACGGCCTGT
HS_assemblymutate_np1212 CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAAGGGCCTGT
HS_haplotype2 CCAGCCACCACAGCATGTGCTGTGTTGGGTAGGATAGGAAGCAGCGCAAGAAGGGCCTGT
**************************************************** *******
HS_haplotype1 CAACCTGGAAATAGCAAAAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA
HS_assemblymutate_np1212 CAACCTGGAAATAGCAACAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA
HS_haplotype2 CAACCTGGAAATAGCAACAAGAAATGTAATCATTACAGCAGTACATGGTTTCAGTCAGGA
***************** ******************************************
HS_haplotype1 GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT
HS_assemblymutate_np1212 GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT
HS_haplotype2 GAAATTCTGTCTCTGGCCATGTCCCATGTCTCATCTCTGGAGACAGGGGGGTTTGTCATT
************************************************************
HS_haplotype1 AGAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA
HS_assemblymutate_np1212 AGAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA
HS_haplotype2 AAAAATTCCCAGGGGGAGCTCAATTTTGTAAAAACCTGGAACTTTTGAAACTAGCTGTAA
* **********************************************************
HS_haplotype1 ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC
HS_assemblymutate_np1212 ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC
HS_haplotype2 ATATTCATAGCACATATTCATCATGACATAATCAAGATGCTTTGGGGTTGGGTTTGATCC
************************************************************
HS_haplotype1 CGGCCTTTTCATCCTGCCTGGGGAAGGTGGGGAGAATATGGGACCCCTCTGCATGGGGAT
HS_assemblymutate_np1212 CGGCCTTTTCATCCTGCCTGGGGAAGGTGGGGAGAATATGGGACCCCTCTGCATGGGGAT
HS_haplotype2 CGGCCTTTCCATCCTGCCTGGAGAAGGTGGGGAGAATATGGGACCCCTCTGCATGGGGAT
******** ************ **************************************
HS_haplotype1 CGCTGATGTGCAATTTTAATAGAAGGGTTCATGACGAAATGTGTGCCTCAGTGCCGAGTG
HS_assemblymutate_np1212 CGCTGATGTGCAATTTTAATAAAAGGGTTCATGATGAGATGTGTGCCTCAGTGCCGAGTG
HS_haplotype2 CGCTGATGTGCAATTTTAATAAAAGGGTTCATGATGAGATGTGTGCCTCAGTGCCGAGTG
********************* ************ ** **********************
HS_haplotype1 AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC
HS_assemblymutate_np1212 AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC
HS_haplotype2 AGAATTCATTTAACAGTCTTGGGGGGCAAAGCATTCTGCTGACTAGTGAAATTAACCTTC
************************************************************
HS_haplotype1 ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGAGCTTGCAGTATAATAATAAGTCTTT
HS_assemblymutate_np1212 ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGAGCTCGCAGTATAATAATAAGTCTTT
HS_haplotype2 ACGACACCTGGGTCTTAGGAAGGAAGTGACGGGGAGCTCGCAGTATAATAATAAGTCGTT
************************************** ****************** **
HS_haplotype1 GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCAACCTCAGAGCTGC
HS_assemblymutate_np1212 GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCAACCTCAGAGCTGC
HS_haplotype2 GGACATTTGACCAGGTATATATTTTAGTCTCGCTCGGGAACTCTGCAACCTCAGAGCTGC
************************************************************
HS_haplotype1 TCATCATCCGCGGTTCTACTTCTTAAACTGCGGGGAGGCATTTATAGTTTTTCTGCACCT
HS_assemblymutate_np1212 TCATCATCCGCGGTTCTACTTCTTAAACTGCGGGGAGGCATTTATAGTTTTTCTGCACCT
HS_haplotype2 TCATCATCCGCGGTTCTACTTCTTAAACTGCGGGGAGGCATTTATAGTTTTTCTGCACCT
************************************************************
HS_haplotype1 TCAATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAAGCAAAGTCAAGACAATAGAAA
HS_assemblymutate_np1212 TCAATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAAGCAAAGTCAAGACAATAGAAA
HS_haplotype2 TCAATGTGTGACCACGTTTCTGGTGGGATATGCAGCCAAGCAAAGTCAAGACAATAGAAA
************************************************************
HS_haplotype1 GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGTGGATCTT
HS_assemblymutate_np1212 GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGTGGATCTT
HS_haplotype2 GTAATTAAGAGCCTTGAAACAAAATGTAGATACATTGGAGAGGGGCTCACTGTGGATCTT
************************************************************
HS_haplotype1 CTGTGGAGATAAGTGTGTTTCAAAAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT
HS_assemblymutate_np1212 CTGTGGAGATAAGTGTGTTTCAAAAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT
HS_haplotype2 CTGTGGAGATAAGTGTGTTTCAAAAATGAGCCTCTCTTAAATTAGAAAGAGTTATTGTTT
************************************************************
HS_haplotype1 TGACCTACCTTCTCTCAGTAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT
HS_assemblymutate_np1212 TGACCTACCTTCTCTCAGTAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT
HS_haplotype2 TGACCGGCCTTCTCTCAATAACCAGCCCCAGGCAGGTCTACAAGTACAGGTCAAATCCTT
***** ********** ******************************************
HS_haplotype1 GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGAGATCACTAGGCATCA
HS_assemblymutate_np1212 GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGAGATCACTAGGCATCA
HS_haplotype2 GAGCGAATACACTTTTTGTGACACACTGATTCAATAAAAAACTGGGATCACTAGGCATCA
******************************************** ***************
HS_haplotype1 TGTAGAGGTAGTCAGGACTCACAGAGCTTCTACATGGTGAGAAGTGTCTGAAGAGCTCTG
HS_assemblymutate_np1212 TGTAGAGGTAGTCAGGACTCACAGAGCTTCTACATGGTGAGAAGTGTCTGAAGAGCTCTG
HS_haplotype2 TGTGGAGGTAGTCACGACTGACAGAGCATCTACATGGTGAGAAGTGTCTGAAGAGCTCTG
*** ********** **** ******* ********************************
HS_haplotype1 GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTCCAACCTCTCCCCCCCCAAAGGAGACTC
HS_assemblymutate_np1212 GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTCCAACCTCTCCCCCCCCAAAGGAGACTC
HS_haplotype2 GACTTGTCCTGTGCCCACCCAGAGCTGGGTTTACAACATCTCCCCCCCCAATGGAGACTC
******************************** **** ************* ********
HS_haplotype1 TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGCCGAGTCAGGAGGTCTTG
HS_assemblymutate_np1212 TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGCCGAGTCAGGAGGTCTTG
HS_haplotype2 TGGGTGATTACAATAACTGGCCTACCCACCGAAAAAAAAGGGTCGAGTCAGGAGGTCTTG
****************************************** *****************
HS_haplotype1 ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCCTCCTGTAGGAACACATTCCA
HS_assemblymutate_np1212 ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCCTCCTGTAGGAACACATTCCA
HS_haplotype2 ACATGTTAGGCTTGTCCTGTTCACGAGGTGGGACTTGGCTTCCTGTAGGAACACATTCCA
*************************************** ********************
HS_haplotype1 GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT
HS_assemblymutate_np1212 GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT
HS_haplotype2 GAAAAGCGATCTGGGACGTGAAAAGAGGAGTTGAGTATGTCACTCACTCTTAGATCATTT
************************************************************
HS_haplotype1 CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC
HS_assemblymutate_np1212 CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC
HS_haplotype2 CAGAGCTGCTGTGCAGGTGCAGTAAGAGGGTCTGCACTTTGTCTCCTTTTCGGTAGCTAC
************************************************************
HS_haplotype1 TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC
HS_assemblymutate_np1212 TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC
HS_haplotype2 TTTACATTCAAGACCATCCCCCCTCGTCCGCCCGAGGCGCGTGTTCCCCTTTGTGAGCCC
************************************************************
HS_haplotype1 AAACACAAATTGATAAACTTCCCATTTAATATTAACTGCAGAACTGGGGATGCATCTATC
HS_assemblymutate_np1212 AAACACAAATTGATAAACTTCCCATTTAATATTAACTGCACAACTGGGGATGCATCTATC
HS_haplotype2 AGACAGAAATTGATAAACTTCCCATTTAATATTAACTGCACAACTGGGGATGCATCTATC
* *** ********************************** *******************
HS_haplotype1 CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC
HS_assemblymutate_np1212 CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC
HS_haplotype2 CACCAGCCTGTAGTACAGGCGGCTCTACAAGGAACAGGAACAGCCCCAGGTCAGCTATTC
************************************************************
HS_haplotype1 TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAACTCTCCTGCTTAAAACTTGTTTCCT
HS_assemblymutate_np1212 TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAAGTCTCCTGCTTAAAACTTGTTTCCT
HS_haplotype2 TCTTCTGACTGAGACTCAGCCTGGGGAGGTCAGAAGTCTCCTGCTTAAAACTTGTTTCCT
*********************************** ************************
HS_haplotype1 TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT
HS_assemblymutate_np1212 TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT
HS_haplotype2 TTTGCAGGAGCCATGTTGAGTTTCTAGAAGAACAGGGATTTAAGGAAAGGGAGGTCATGT
************************************************************
HS_haplotype1 CTGGCCTCCCAACAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTATTT
HS_assemblymutate_np1212 CTGGCCTCCCAACAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTTTTT
HS_haplotype2 CTGGCCTCCCAAAAACAAAATTTAAGTAAAAGAAATAGCATAGATTACGTCACACTTTTT
************ ******************************************* ***
HS_haplotype1 AGGCGATTTTGGGATACCAAAATGGGGAGAATGTACAAATCTACTAAATTGTTTTTAATT
HS_assemblymutate_np1212 AGGCGATTTTGGGAGACCAAAATGGGGAGAATGTACAAATCTACTAAATTGTTTTTAATT
HS_haplotype2 AGGCGATTTTGGGAGACCAAAATGGGGAGAATGTACAAATCTACTAAATTGTTTTTAATT
************** *********************************************
HS_haplotype1 AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCCGGTGAGGCAAGGCAAATAGGCCAG
HS_assemblymutate_np1212 AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCAGGTGAGGCAAGGCAAATAGGCCAG
HS_haplotype2 AAATAGTGAGTCCACCCCGTATCTGCCCGCAGCTCAGGTGAGGCAAGGCAAATAGGCCAG
*********************************** ************************
HS_haplotype1 CCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG
HS_assemblymutate_np1212 CCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG
HS_haplotype2 TCTGGGATTACTGGGGAGCAAGGGTCCAGGCATGCCAGGAGCAATAGACACACATGTGGG
***********************************************************
HS_haplotype1 ACTGAAGTCTTAACTTTGCAGTGGAATTCTCTGAAAAGATGTTTCTCAAGAATTGCTCAG
HS_assemblymutate_np1212 ACTGAAGTCTTAACTTTGCAGTGGAATTCTCTGAAAAGATGTTTCTCAAGAATTGCTCAG
HS_haplotype2 ACTGAATTCATAACTTTGCAGTGGAATTCTCAGAAAAGATGTTTCTCAAGAATTGCTGAG
****** ** ********************* ************************* **
HS_haplotype1 GTTGGGCAAAAATTGCTTTTGCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG
HS_assemblymutate_np1212 GTTGGGCAAAAATTGCTTTTGCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG
HS_haplotype2 GTTGGGCAAAAATTGCTTTTTCAGGGCTGGTGGGGACAAGTAGCCAAGGTCATGAAGAGG
******************** ***************************************
HS_haplotype1 TCAATCTGTTATGATCTCATGTGTTCAATATTAAATAGAAAAGGTACTGTTTTGGCTTCC
HS_assemblymutate_np1212 TCAATCTGTTATGATCTCATGTGTTCAACATTAAATAGAAAAGGTACTGTTTTGGCTTCA
HS_haplotype2 TCAATCTGTTATGATCTCATGTGTTCAACATTAAATAGAAAAGGTACTGTTTTGGCTTCA
**************************** ******************************
HS_haplotype1 GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGCACAGAAGCCGAGGGAATTAGC
HS_assemblymutate_np1212 GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGCACAGAAGCCGAGGGAATTAGC
HS_haplotype2 GTTTGAGGCCAGGCTAGGATGGCAGGAGAGTGAGGCGGGACAGAAGCCGAGGGAATTAGC
************************************** *********************
HS_haplotype1 CTTGTATGTTCAGCCTGAATGTTGACTCTGCATGCTTCTCCTCAGCCCTTTCTTCAGTCT
HS_assemblymutate_np1212 CTTGTATGTTCAGCCTGAATGTTGACTCTGCATGCTTCTCCTCAGCCCTTTCTTCAGTCT
HS_haplotype2 CTTGTATGTTCAGCCTGAACGTTGACTCTGGATGCTTCTCCTCAGCCCTTTCTTCAGTCT
******************* ********** *****************************
HS_haplotype1 CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC
HS_assemblymutate_np1212 CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC
HS_haplotype2 CACACGGGGAGAGAGGGGAGGCAGGGTGTGGCTGAAACCCGGCCAGGAGTCCCTTCCTTC
************************************************************
HS_haplotype1 TGCTTTCCTCAGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCAAGG
HS_assemblymutate_np1212 TGCTTTCCTCCGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCAAGG
HS_haplotype2 TGCTTTCCTCCGCCTGGGCACCACTGACTTATTTTGTCAAATAGGAAATAAAAAGCAAGG
********** *************************************************
HS_haplotype1 GAGTCAAGATCATCACTCCTGGCATGCCATACAAAAAAACAGCATCAAGATCTTGCAAGT
HS_assemblymutate_np1212 GAGTCAAGATCATCACTCCAGGCATGCCATACAAAAAAACAGCATCAAGATCTTGCAAGT
HS_haplotype2 GAGTCAAGATCATCACTCCAGGCATGCCATACAAAAAAACAGCATCAAGATCTTGCAAGT
******************* ****************************************
HS_haplotype1 TTATGTCCATATTTGTGACTTGAAAGTGCTGCTGGCTCTAGTGGAAGCCAGCAAGTATAT
HS_assemblymutate_np1212 TTATGTCCCTATTTGTGACTTGAAAGTGCTCCTGGCTCTAGTGTAAGCCAGCAAGTATAT
HS_haplotype2 TTATGTCCCTATTTGTGACTTGAAAGTGCTCCTGGCTCTAGTGTAAGCCAGCAAGTATAT
******** ********************* ************ ****************
HS_haplotype1 TACTTCAGAGTCATTACAAGCAAGGTAGGAGTGCCACTGCTCCTGATTGCCCATCACTGC
HS_assemblymutate_np1212 TACTTCTGAGTCATTACAAGCAAGGGAGGAGTGCCACTACTCCTGATTGCCCATCACTGC
HS_haplotype2 TACTTCTGAGTCATTACAAGCAAGGGAGGAGTGCCACTACTCCTGATTGCCCATCACTGC
****** ****************** ************ *********************
HS_haplotype1 ACTGTTTCTATGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA
HS_assemblymutate_np1212 ACTGTTTCTAGGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA
HS_haplotype2 ACTGTTTCTAGGCAGGTGTTAAAAGGGATTTTAGCTGCCACATGCTGGGAGGCAGGCTGA
********** *************************************************
HS_haplotype1 GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGATAGAGGACACGTAATCTGGACGGT
HS_assemblymutate_np1212 GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGATAGAGGACACGTAATCTGGATGGT
HS_haplotype2 GCCCAGCATCTATTCTCCATCTGGGCAAGGAATAGATAGAGGACACGTAATCTGGATGGT
******************************************************** ***
HS_haplotype1 GGAGGGGTTTTTTTCTTTTTGTTGCTCACGTGGTATAAATTTTACTTAGCCGGGCTCCTG
HS_assemblymutate_np1212 GGAGGGGTTTTTTTCATTTTGTTGCTCACGTGGTATAAATTTTACTTAGCCGGGCTCCTG
HS_haplotype2 GGAGGGGTTTTTTTCATTTTGTAGCTCACGTGGTATAAATTATACTTAGCCGGGCTCCTG
*************** ****** ****************** ******************
HS_haplotype1 ACAGGATTACCCAAATTCACCACCAGATTGCACTATCTATCATCTGAGGTTGCGCAGTTT
HS_assemblymutate_np1212 ACAGGATTACCCAAATTCACCACCAGATTGCACTATCTATCATCTGAGGTTGCGCAGTTT
HS_haplotype2 ACAGGATTACCCAAATTCACCACCAGACTGCACTATCTATCATCTGAGGTTGCGCAGTTT
*************************** ********************************
HS_haplotype1 GTGCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC
HS_assemblymutate_np1212 GTGCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC
HS_haplotype2 GTTCAGTACCACCATAAGACTTCTCTGTCACGTTCCCGAGGCTGCTTCTGGGATCCATGC
** *********************************************************
HS_haplotype1 TAGGAGTTTGGGGCTTCTTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA
HS_assemblymutate_np1212 TAGGAGTTTGGGGCTTATTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA
HS_haplotype2 TAGGAGTTTGGGGCTTATTATCTAACCTGCAATGAGCCAGAGAGAAGATTCAGAATGCCA
**************** *******************************************
HS_haplotype1 CTGACATTTTGAGGCTGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA
HS_assemblymutate_np1212 CTGACATTTTGAGGCAGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA
HS_haplotype2 CTGACATTTTGAGGCAGAATCGCTTGTTCCATGAGCAGAGGCCACTTTTAGGCACCAGTA
*************** ********************************************
HS_haplotype1 GAGAATGACCACCCACAACTCAAATTAGCCCTCATTTTAGTAGCTACTTAAAATTAATTT
HS_assemblymutate_np1212 GAGAATGACCACCCACAAATCAAATTAGCCCTCATTTTAGTAGCCACTTAAAATTAATTT
HS_haplotype2 GAGAATGACCACCCACAAATCAAATTAGCCCTCATTTTAGTAGCCACTTAAAATTAATTT
****************** ************************* ***************
HS_haplotype1 TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAATAG
HS_assemblymutate_np1212 TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAATAG
HS_haplotype2 TAACAGACTTCGACCCTCGGGTCTACTTCTTCGGTACCATCCCAAAATCCAGCACAAAAG
********************************************************* **
HS_haplotype1 GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT
HS_assemblymutate_np1212 GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT
HS_haplotype2 GTGTTTGATGTTTTCACCTGGCGTGGGCTCAAATCTTGCCAAGGGTTCAAGTGATTTGTT
************************************************************
HS_haplotype1 TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTTATCAG
HS_assemblymutate_np1212 TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTTATCAG
HS_haplotype2 TCTAGCATGTGCAACGGACGTATTTTTAATATTCTCACGTATCAGGCCATTGGTTATCAG
************************************************************
HS_haplotype1 CGTTCTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTTAATTTTTCTTG
HS_assemblymutate_np1212 CGTTCTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTTAATTTTTCTTG
HS_haplotype2 CGTTTTCAAAGGGTGGATTACTTCACACCACATCACTCCAGGCTGGTTCAATTTTTCTTG
**** ******************************************* ***********
HS_haplotype1 AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG
HS_assemblymutate_np1212 AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG
HS_haplotype2 AGCTGAGGATTATGGATTCTAATTTTAGACAGGCAGAAAAGAGATGTCACTGTAGAGAAG
************************************************************
HS_haplotype1 GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC
HS_assemblymutate_np1212 GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC
HS_haplotype2 GAGTTTATTTTTGAAAGAACAGAGAGGCAGGCAGAAAAATCAAGATTGCCCTGGCAAGAC
************************************************************
HS_haplotype1 AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTGTGCATGTTT
HS_assemblymutate_np1212 AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTGTGCATGTTT
HS_haplotype2 AAGCGCACGAAACCATCTTATTTTTACACTCCAAAGCAGCGTTGTAGGTTCTGCATGTTT
************************************************** *********
HS_haplotype1 GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAAAAATCTCACTCTACAATGATGGCT
HS_assemblymutate_np1212 GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAAAAATCTCACTCTACAATGATGGCT
HS_haplotype2 GGGTCTCGGTCGACACAGCAGTGATAGTAGAGACAACAATCTCACTCTACAATGATGGCT
************************************ ***********************
HS_haplotype1 CTGTCTCTGTGGGATATACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA
HS_assemblymutate_np1212 CTGTCTCTGTGGGATCTACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA
HS_haplotype2 CTGTCTCTGTGGGATCTACAAACATCACAGTGGGCCCCCATGTTTCTGAGGAAGATTATA
*************** ********************************************
HS_haplotype1 ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG
HS_assemblymutate_np1212 ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG
HS_haplotype2 ACTGAAAAAAAAATTATGTACCTACTGACAGAGCCTGGGTTGCCTGAATTTGTTTTTAGG
************************************************************
HS_haplotype1 AGTTCATTAACCAAACCAGGCTGAAGTTATCCAGTCTGGGAGTGAGGCATTCAACAGCAA
HS_assemblymutate_np1212 AGTTCATTAACCAAACCAGGCTGCAGTTATCCAGTCTGGGAGTGAGGCATTCAACAGCAA
HS_haplotype2 AGTTCATTAACCAAACCAGGCTGCAGTTATCCAGTCTGGGAGTGAGGCATTCAACAGCAA
*********************** ************************************
HS_haplotype1 GATGCATTGCTCCCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATGGTACTC
HS_assemblymutate_np1212 GATGCATTGCTCCCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATGGTACTC
HS_haplotype2 GATGCATTGGTCGCTCCTGAGGCACCAGCAGGAGGAACTCCACCATGTCCTATCGTACTC
********* ** **************************************** ******
HS_haplotype1 TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGAAACGCTCCCGGGGCTG
HS_assemblymutate_np1212 TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGAAACGCTCCCGGGGCTG
HS_haplotype2 TAAGACTGTGAAGCTCCCGGGGGAGGTTGCAGTATACCATTTGTAACGCTCCCAGGGCTG
******************************************* ********* ******
HS_haplotype1 CCAGGTCTCTCTTGCTCGTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGAGACTGGTG
HS_assemblymutate_np1212 CCAGGTCTCTCTTGCTCGTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGAGACTGGTG
HS_haplotype2 CCAGGTCGCTCTTGCTCCTGAAAAAGCAGGCATTGCTGCCGGGCGGAAGAGACACTGGTG
******* ********* ********************************** *******
HS_haplotype1 CTGAGCCTCCATCTTGGCGATCTTAGTCCGGGCTCAGGAGTCAGATGGTGGCTAACCTCA
HS_assemblymutate_np1212 CTGAGCCTCCATCTTGGCGATCTTATTCCGGGCTCAGGAGTCAGATGGTGGCTAACCTCA
HS_haplotype2 CTGATCCTCCATCTTCGCGATCTTATTCCGGGCTCAGGAGTCAGATGGTGGCTAACCTCA
**** ********** ********* **********************************
HS_haplotype1 TTTCCCCCATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA
HS_assemblymutate_np1212 TTTCCCCCATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA
HS_haplotype2 TTTCCCCCATGGGAGGTCTAGACATCACTTCCTGGCTTTATTATTTTAGTAGAAAACACA
************************************************************
HS_haplotype1 CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAAGCACTTTGTTTCTTCAAAGATT
HS_assemblymutate_np1212 CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAAGCACTTTGTTTCTTCAAAGATT
HS_haplotype2 CCTTGCGTCTGAGTTCTTAGGTCGCCCGCCTGTGTGAAGCACTTTGTTTCTTCAAAGATT
************************************************************
HS_haplotype1 CGGTCAGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCCAGTCCCCT
HS_assemblymutate_np1212 CGGTCAGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCCAGTCCCCT
HS_haplotype2 CGGTCAGGAGAAAGTCTACAGATGGTTTTATCATTGTTCATGCCTCACTTCGAGTCCCCT
*************************************************** ********
HS_haplotype1 CCATAAAATGACATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT
HS_assemblymutate_np1212 CCATAAAATGACATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT
HS_haplotype2 CCATAAAATGAAATGCACTTTGCTCACCGCCCAGCTACTAGTAGCAACCCAGCCCCAGGT
*********** ************************************************
HS_haplotype1 TCAACGGTCTCATTGTCTGCCACTGTTCACATATGTGGTCTCAGCCTTTCGTAGTCCCAA
HS_assemblymutate_np1212 TCAACGGTCTCATTGTCTGCCACTGTTCACATCTGTGGTCTCAGCCTTTCGTAGTCCCAA
HS_haplotype2 TCAACGGTCTCATTGTCTGCCACTGTTCACATCTGTGGTCTCAGCCTTTCGTAGTCCCAA
******************************** ***************************
HS_haplotype1 AATACTTATTTAAACAGGAATTGGGCAACCCTACGCAACAACACCTGTGCAGCTTCAGAT
HS_assemblymutate_np1212 AATTCTTATTTAAACAGGAACTGGGCAACCCTACGCAACAACACCTCTGCAGCTTCAGAT
HS_haplotype2 AATTCTTATTTAAACAGGAACTGGGCAACCCTACGCAACAACACCTCTGCAGCTTCAGAT
*** **************** ************************* *************
HS_haplotype1 TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAAGAGACGATG
HS_assemblymutate_np1212 TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAAGAGACGATG
HS_haplotype2 TACAGAAGCAAAAATATTATCCAAAGACCCGGCCACAGAGAAAATATCCAGGAGACGATG
************************************************** *********
HS_haplotype1 GCTCAGGTCAAATAAACAAATATACACGATTGCTCCACTCCTGCAGTCTCGGCCCTTTGC
HS_assemblymutate_np1212 GCTCAGGTCAAATAAACAAATATACACGATTGCTCCACTCCTGCAGTCTCGGCCCTTTGC
HS_haplotype2 GCTCAGGTCAAATAAACAAATATACACAATTGCTCCACTCCTGCAGTCTCAGCCCTTTGC
*************************** ********************** *********
HS_haplotype1 CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCACCTGGGGTTCTGTTACATA
HS_assemblymutate_np1212 CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCACCTGGGGTTCTGTTACATA
HS_haplotype2 CGCAGCATCGTGTGGTTAATTTAGAACAGATGAACAGGCCAGCTGGGGTTCTGTTACATA
***************************************** ******************
HS_haplotype1 GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC
HS_assemblymutate_np1212 GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC
HS_haplotype2 GTTTATGATTCTCACCCACTCACTGGTCCTTTTTTATAAACTAGAACACACCTACTCATC
************************************************************
HS_haplotype1 ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA
HS_assemblymutate_np1212 ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA
HS_haplotype2 ACATCGTTTGAAATATCGAAAACACCCTTCTGGGCGGCACTCCTGTAGAGAAGAAAAAAA
************************************************************
HS_haplotype1 TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG
HS_assemblymutate_np1212 TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG
HS_haplotype2 TAAAGATCTCCTCCCAAAACAAACAACATACACTTCATTCATCAAGTCCAGTTTTTGGGG
************************************************************
HS_haplotype1 ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG
HS_assemblymutate_np1212 ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG
HS_haplotype2 ACTAAATTGGAGTTTATGTTACTATGAGGCATTTCTTCTTCCAGCGCCCCTAGAGTGGTG
************************************************************
HS_haplotype1 ATCCACCCACGGACCTCTGGTGATCCATGTGGTCTAAGGCATATTCTATGGGTACATAGT
HS_assemblymutate_np1212 ATCCACCCACGGACCTCTGGTGATCCATGTGGTCTAAGGCATATTCTATGGGTACATAGT
HS_haplotype2 ATCCACCCACGGACCTCTGGTGAACCATGTGGTCTAAGGCATAGTCTATGGGTACATAGT
*********************** ******************* ****************
HS_haplotype1 GAAATTCCAGCACTTCAGGTGGTGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC
HS_assemblymutate_np1212 GAAATTCCAGCACTTCAGGTGGTGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC
HS_haplotype2 GAAGTTCCAGCACTTCAGGTGGTGCGGCTTCTCAACTTGGGGGGAGAGGCGGGGGAGCGC
*** ********************************************************
HS_haplotype1 TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT
HS_assemblymutate_np1212 TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT
HS_haplotype2 TTGATTACAGACATTTCCTTCATATTCAGGGGAGAGGTCGAGCCCTTGATTGGCGTGTCT
************************************************************
HS_haplotype1 ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA
HS_assemblymutate_np1212 ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA
HS_haplotype2 ACTTTAGGTCAGCAGTGGAAGAAGGTCGGCAGGAGTCTGCCCAGCATTAGCACTTTAAAA
************************************************************
HS_haplotype1 GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGAAGATCTCGGCTATTTGAA
HS_assemblymutate_np1212 GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGAAGATCTCGGCTATTTGAA
HS_haplotype2 GGTAATATTTTTGTGCTGCCTGCCAGCTCAACCATCTGCTGGAGATCTCGGCTATTTGAA
***************************************** ******************
HS_haplotype1 CTATATTGGGATGTCATTCTTTAGAACAGGTCTACTCCCTATTTTTGCATTGTCTAGACA
HS_assemblymutate_np1212 CTATATTGGGATGTCATTCTTTAGAACAGGTCTAGTCCCTATTTTTGCATTGTCTAGTCA
HS_haplotype2 CTATATTGGGATGTCATTCTTTAGAACAGGTCTAGTCCCTATTTTTGCATTGTCTAGTCA
********************************** ********************** **
HS_haplotype1 CCATTCTGGACCATGCTCCGAACGTGTGAAGGTTGCCCGTCTTCATAATTTCTGTTTACG
HS_assemblymutate_np1212 CCATTCTGGACCATGATCCGAACGTGTGAAGGTTGCCCTTCTTCATAATTTCTGTTTACG
HS_haplotype2 CCATTCTGGACCATGATCCGAACGTGTGAAGGTTGCCCTTCTTCATAATTTCTGTTTACG
*************** ********************** *********************
HS_haplotype1 GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT
HS_assemblymutate_np1212 GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT
HS_haplotype2 GGCTCTCCTGCTGGGTGGCTTTCTCCCGGTCAGGTGAGGCGTTTACTTGCTAGGTATCGT
************************************************************
HS_haplotype1 GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT
HS_assemblymutate_np1212 GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT
HS_haplotype2 GCGCCATCTTTTCTCACTTGATGTATTTATTATTAGCCCTAACTCTGTGTAAACACCTTT
************************************************************
HS_haplotype1 AGGACGAGCAGGAGCAAGCCTCCTCAGGCTTGCGTCTATAGTATATGTCGCAGAGAGAGG
HS_assemblymutate_np1212 AGGACGAGCAGGAGCAAGCCTCCTCAGGCTTGCTTCTATAGTATATGTCGCAGAGAGAGG
HS_haplotype2 AGGACGAGCAGGAACAAGCCTCCTCAGGCTTGCTTCTATAGTATATGTCGCAGAGAGAGG
************* ******************* **************************
HS_haplotype1 GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC
HS_assemblymutate_np1212 GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC
HS_haplotype2 GCATGTTGAGACCATTACACGAACCCTCTTGATAAATAGACAAGGAAACTGCCCGGGGTC
************************************************************
HS_haplotype1 TCTGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT
HS_assemblymutate_np1212 TCAGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT
HS_haplotype2 TCAGATGATCTAGTAGCTGACCTCGGAGCAAAGGGGTTTAAAATTGGTAGGGTAGTAATT
** *********************************************************
HS_haplotype1 GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAACATTCCACCTCGTGATAAC
HS_assemblymutate_np1212 GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAATATTCCACCTCGTGATAAC
HS_haplotype2 GCTGGGAATATGTTGGCTTGTAGACAAGAGGCCCAAAGGAATATTCCACCTCGTGATAAC
***************************************** ******************
HS_haplotype1 TTCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATGCTGTAATCTTGTTA
HS_assemblymutate_np1212 TCCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATACTGTAATCTTGTTA
HS_haplotype2 TCCAGGCTGGATCCTTTCCCGCCCCTCCAAAAACATTAGAACGATACTGTAATCTTGTTA
* ******************************************* **************
HS_haplotype1 GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGTGGAGCGAAACCT
HS_assemblymutate_np1212 GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGTGGAGCGAATCCT
HS_haplotype2 GCTGGAAAGAGGCACTTTCCCTTTTAAGCACAGGCTCATTTTCGCGGAGGAGCGAATCCT
*********************************************** ******** ***
HS_haplotype1 TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGTGGATTCACTAGCCCCCTGCTCTT
HS_assemblymutate_np1212 TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGTGGATTCACTCGCCCCCTGCTCTT
HS_haplotype2 TGGCCACCAGTGGATTACCGACTGAAGCTCGGCCAGAGGATTCACTCGCCCCCTGCTCTT
************************************ ********* *************
HS_haplotype1 GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTGAATAACAGAGCCATACCGCAAA
HS_assemblymutate_np1212 GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTGAATAACAGAGCCATACCGCAAA
HS_haplotype2 GGCCTCCCAGGCGGGAGGCAGCAGCATAAGAAAGGTTGAATAACAGAGCCATACCGCAAA
************************************************************
HS_haplotype1 TCTCTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGATGAACAAAAAA
HS_assemblymutate_np1212 TCTCTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGGTGAACAAAAAA
HS_haplotype2 TCTTTTAACAACATCTTTAGCAGTCTCTGAAGCTGGCCACTGCGACGGGTGAACAAAAAA
*** ******************************************** ***********
HS_haplotype1 AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT
HS_assemblymutate_np1212 AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT
HS_haplotype2 AGCAATGAATCCTTTCTTCTACTCCTGCCCATGGCTGTTTCGTCGTGCCAAAAAAAACGT
************************************************************
HS_haplotype1 GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG
HS_assemblymutate_np1212 GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG
HS_haplotype2 GTGCACAGTAGAAAACTAGCCAACAGAAAATGCAGCAGTGGGATTACATATGTGTCCGGG
************************************************************
HS_haplotype1 GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA
HS_assemblymutate_np1212 GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA
HS_haplotype2 GAAGGCACAAACTTAACAATTTCTGTCCACTCACTCTCTCTCATGAAAATTCAAAATTGA
************************************************************
HS_haplotype1 ACCCTGCAAGCTAGAGTGTGGCTCTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT
HS_assemblymutate_np1212 ACCCTGCCAGCTAGAGTGTGGCTCTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT
HS_haplotype2 ACCCTGCCAGCTAGAGTGAGGCTCTTGTAGAAGAGGGCTCTTCCACAGCATGGGCTTCCT
******* ********** *****************************************
HS_haplotype1 TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGAAAACTAAATGCTTTCTC
HS_assemblymutate_np1212 TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGAAAACTAAATGCTTTCTC
HS_haplotype2 TCCTAGATCGAACTGCCTAGCTGAATGGTTTGCTCTGCAACGATAACTAAATGCTTTCTC
******************************************* ****************
HS_haplotype1 CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT
HS_assemblymutate_np1212 CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT
HS_haplotype2 CTATGGAAGAATGTACTGGCCAGGAACTACATAGCTGTTTTAAGAAATGTGAGCACTGGT
************************************************************
HS_haplotype1 AGACATGTCAGGTAGTGAGGCTAAAAAATAAATAGTGTAGGATTATTAAATGACTCCAGA
HS_assemblymutate_np1212 AGACATGTCAGGTAGTGAGGCTAAAAAATAAATAGTGTAGGATTATTAAATGACTCCAGA
HS_haplotype2 AGACATGTCAGGTAGTGAGGCTAAAAAATAAATAGTGTAGGATTATTAAATGACTCCAGA
************************************************************
HS_haplotype1 AGACCTCAAAGTCACCCTTCCACTCCATGTAGATTTCTCATGGTGGCTAAGGTAAGCCCA
HS_assemblymutate_np1212 AGACCTCAAAGTCACCCTTCCACTCCATGTAGATTTCTCATGGTGGCTAAGGTAAGCCCA
HS_haplotype2 AGACCTCAAAGTCACCTTTCCACTCCATGTAGATTTCTCATGGTGGCCAAGGTAACCCCA
**************** ****************************** ******* ****
HS_haplotype1 GAGGGCACCACCTCCGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA
HS_assemblymutate_np1212 GAGGGCACCACCTCCGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA
HS_haplotype2 GAGGGCACCACCTCCGAAGATCCCGGGCTGTTTAGTCAGAATTCTCTGCCTCAGAATGTA
************************************************************
HS_haplotype1 TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTGAGCCTGGACAA
HS_assemblymutate_np1212 TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTGAGCCTGGCCAA
HS_haplotype2 TACTAACTGGAACTTCTATGGACTGTTTCCGAGGCATTTTATTAGTCTGAGCCTGGCCAA
******************************************************** ***
HS_haplotype1 GACCCTCTACTCAGCCACGTGGAAATTAAGAGCCAGTGCAGCCCAACTCTATAAGAGGAT
HS_assemblymutate_np1212 GACCCTCTACTCAGCCACGTGGAAATTAAGAGCCAGTGGAGCCCAACTCTATAAGAGGAT
HS_haplotype2 GACCCTCTACTCAGCCACGTGGAAATTAAGAGCCAGTGGAGCCCAACTCTATAAGAGGAT
************************************** *********************
HS_haplotype1 TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC
HS_assemblymutate_np1212 TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC
HS_haplotype2 TATATTTCTAGCTGGCTTCCTTCCTGGGGGCACTATTGTACCTCAGGAGTTAATACACTC
************************************************************
HS_haplotype1 TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC
HS_assemblymutate_np1212 TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC
HS_haplotype2 TCCCAGGGTTTACAGGTTTGTCTGGGTGCGGTTTCTGCTGATAGATTCAAGTCAGGAGAC
************************************************************
HS_haplotype1 CAACAGGTGAAGCCTCTTCCCCAGCTTCGGCCTAAATTGTTGGTACAACAGATTCCTCCG
HS_assemblymutate_np1212 CAACAGGTGAAGCCTCTTCCCCAGCTTCGGCCTAAATTGTTGGTACAACAGATTCCTCCG
HS_haplotype2 CAACGGGTGAAGCCTCTTCCCCAGCTTCGGCCTCAATTGTTGGTACAACAGATTCCTCCG
**** **************************** **************************
HS_haplotype1 CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACGATCT
HS_assemblymutate_np1212 CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACGATCT
HS_haplotype2 CGGGAAAAATTGTGCAGAGAAATAACATTTGCGGTGTAATTTTCAGTAAACATACAATCT
******************************************************* ****
HS_haplotype1 AATTCCTGTAGCCCCCCTTGAGGGGTAACATGGTGACTTCTGACAGCTCACACAAACTCC
HS_assemblymutate_np1212 AATTCCTGTAGCCCCCCTTGAGGGGTAACATGGTGACTTCTGATAGCTCACACAAACTAC
HS_haplotype2 AATTCCTGTAGCCCCCCTTGAGGGGTAACATGGTGACTTCTGATAGCTCACACAAACTAC
******************************************* ************** *
HS_haplotype1 AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGGGAATAGTATCTCAA
HS_assemblymutate_np1212 AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGTGAATAGTATCTCAA
HS_haplotype2 AAAGCTGGCACCTAGATAGAAGCATATCATCCATTAAGACCACAGTGAATAGTATCTCAA
********************************************* **************
HS_haplotype1 GCCACGACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT
HS_assemblymutate_np1212 GCCACCACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT
HS_haplotype2 GCCACCACCCACAAAGCTTGGCACTTTTCTCGGTAAATTTTTGTCCCAGAGCTCAACATT
***** ******************************************************
HS_haplotype1 TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG
HS_assemblymutate_np1212 TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG
HS_haplotype2 TGAGAACAGATCAGTATTTAATGCATGACCTGGAGCCGAGGCAACATGGGCCGGGGTCTG
************************************************************
HS_haplotype1 GGCTGGTACGAAAGAGTCAAATTCTTCTTTTGGCCGCCGCACCTAGAATCAGCAAAGTGT
HS_assemblymutate_np1212 GGCTGGTACGAAAGAGTCAAATTCTTATCTTGGCCGCCGCACCTAGAATCAGCAAAGTGT
HS_haplotype2 GGCTGGTACGAAAGAGTCAAATTCTTATCTTGGCCGCCGCACCTAGAATCAGCAAAGTGT
************************** * *******************************
HS_haplotype1 ACAGTGAGCCCGTTATTGTTTAGCACAGAGATACAATATACCAATTTCTGCATTTTATTA
HS_assemblymutate_np1212 ACAGTGAGCCCATTATTGTTTAGCACAGAGATACAATATACCAATTTCTGCATTTTATTA
HS_haplotype2 ACAGTGAGCCCATTATTGTTTAGCACAGAGATACAATATACCCATTTCTGCATTTTATTA
*********** ****************************** *****************
HS_haplotype1 CAGCTCATACCCACTTTAGTATGGAAACTCCTAGGAGTTTCAACTCTCATAGTACTCATA
HS_assemblymutate_np1212 CAGCTCATACCCACTTTAGTATGGAAACTCCTAGGAGTTTCAACTCTCATAGTACTCATA
HS_haplotype2 CAGCACATACCCACTTTAGTATGGAAACTCCTAGGAGTTTCAACTTTCATAGTACTCATA
**** **************************************** **************
HS_haplotype1 GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACCCTTGCAACTCGGAACATGATAACC
HS_assemblymutate_np1212 GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACCCTTGCAACTCGGAACATGATAACC
HS_haplotype2 GAGGACAAGTATCTCCCTGCAAAGAAAAAATTCACTCTTGAAACTCGGAACATGATAACC
*********************************** **** *******************
HS_haplotype1 TGAAAAGGATCCGATGAGGAGGGAGCACCCAGCTAGAAATAATAGATGCATGGGGTGCCT
HS_assemblymutate_np1212 TGAAAAGGATCCGATGAGGAGGGAGCACCCAGCTAGAAATAATAGATGCATGGGGTGCCT
HS_haplotype2 TGAAAAGGATCCGATGGGGAGGGAGCTCCCAGCTATAAATAATAGATGCATGGGGTGCCT
**************** ********* ******** ************************
HS_haplotype1 TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA
HS_assemblymutate_np1212 TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA
HS_haplotype2 TGTTGGAATATTCAGAGCCTAGGAAGGATGTCTGGGATTGGGGGTTGGTCTCGAAGGAGA
************************************************************
HS_haplotype1 CCAGCTGGATTTTTCCGGGTCTTCTTGGACCAGCCCCAAATACATTGGATTTTAATAAAT
HS_assemblymutate_np1212 CCAGCTGGATTTTTCCGGGTCTTCTTGGACCAGCCCCAAATACATTGGATTTTAATAAAT
HS_haplotype2 CCAGCTGGATTTTTCCGGGTCTTCTTCGACCAGCCCCAAATACATTGGATTTTAATAAAT
************************** *********************************
HS_haplotype1 GTCATGCCCAGCAGAGTTTATTCTCAGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT
HS_assemblymutate_np1212 GTCATGCCCAGCAGAGTTTATTCTCAGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT
HS_haplotype2 GTCATGTCCAGCAGAGTTTATTCTCCGTAACATCCGTGCAGCAAAGCAGGACCCAGGGAT
****** ****************** **********************************
HS_haplotype1 ATATCTGTTTTTGATTGCATCGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT
HS_assemblymutate_np1212 ATATCTGTTTTTGATTGCATCGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT
HS_haplotype2 ATATCTGTTTTTGATTGCATGGTCTTGAGGATCAGAATTGTTAAAATCCCCAAATAAAAT
******************** ***************************************
HS_haplotype1 TCTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGTGGATGGTGTTTACCCAAA
HS_assemblymutate_np1212 TTTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGCGGATGGTGTTTACCCAAA
HS_haplotype2 TTTACCATGGGCTGAGACACAGTTTTTAGGCAGTGCAGAGGCGGATGGTGTTTACCCAAA
* *************************************** ******************
HS_haplotype1 AGAAAATAATGTACATGCAAACTTTAAAACACCAGATGTGAGCCCCCTTTGTTGATTCAC
HS_assemblymutate_np1212 AGAAAATAATGTACATGCAAACTTTAAAACACCAGATGTGAGCCCCCTTTGTTGATTCAC
HS_haplotype2 AGAAAATAATGTACATGCAAACTTTAAAACACCACATGTGAGCCCCCTTTGTTGATTCAC
********************************** *************************
HS_haplotype1 CTCAAATTAATATCAGAGAGTGGGAGCACTCCCGGATTTTTACCTAATTATGTTGCTTAC
HS_assemblymutate_np1212 CTCAAATTAACCTCAGAGAGTGGCAGCACTCCAGGATTTTTACCTATTTATGTTGCTTAC
HS_haplotype2 CTCAAATTAACCTCAGAGAGTGGCAGCACTCCAGGATTTTTACCTATTTATGTTGCTTAC
********** *********** ******** ************* *************
HS_haplotype1 AGGGCAAAGAATTAATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAAGCATC
HS_assemblymutate_np1212 AGGGCAAAGAATATATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAAGCAGC
HS_haplotype2 AGGGCAAAGAATATATCAACTGCTGTTGACATGGGTAAGTAGAGCCTCCTTCTAAGCAGC
************ ******************************************** *
HS_haplotype1 TGACTGTTTAATCTTGTGAAATGTAGTCCAGCAAAAGGGCTCAAATACCATGCATACTCG
HS_assemblymutate_np1212 TGGCTGTTTAATCTAGTGAAATGTAGTCCAGCAGAAGGGCTCAAATACCATGCATACTCG
HS_haplotype2 TGGCTGTTTAATCTAGTGAAATGTAGTCCAGCAGAAGGGCTCAAATACCATGCATACTCG
** *********** ****************** **************************
HS_haplotype1 TCATAAGCAGCAGCTGGGACATAGCCTTAATTATAGTCACCCCAGCTAAATTAGAAGAAT
HS_assemblymutate_np1212 TCATAAGCAGCAGCTGGGACATAGCCTTCATTATAGTCACCCCAGCTAAATTAGAAGAAT
HS_haplotype2 TCATAAGCAGCAGCTGGGACATAGCCTTCATTATAGTCACCCCAGCTAAATTAGAAGAAT
**************************** *******************************
HS_haplotype1 TAGGAGTCAGATGGTTGACTCTTCAATAATTTATTTCCTGAATATACGTGAGGTTGAGCT
HS_assemblymutate_np1212 TAGGAGTCAGATGGTTGACTCTTCAATACTTTATTTCCTGAATATACGTGAGGTTGAGCT
HS_haplotype2 TAGGAGTCAGATGGTTGACTCTTCAATACTTTATTTCCTGAATATACGTGAGGTTGAGCT
**************************** *******************************
HS_haplotype1 GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA
HS_assemblymutate_np1212 GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA
HS_haplotype2 GGACCAGTTGTGGGTTGAGAGGTTTTTGCACCCAGCCATCTAACAACTGCACAGAACCCA
************************************************************
HS_haplotype1 TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCTTTTGCTGCTATGGCCAG
HS_assemblymutate_np1212 TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCTTTTGCTGCTATGGCCAG
HS_haplotype2 TCATAAGCACTGTGAAGTGAGGTGCAGCTACTAGGGGGTTTCCTCTGCTGCTATGGCCAG
****************************************** * ***************
HS_haplotype1 AGCAAAATCTACTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTGGA
HS_assemblymutate_np1212 AGCAAAATCTCCTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTGGA
HS_haplotype2 AGCAAAATCTCCTATTGAAAGGTTAAAATGGTCTTGTGCATATATTTTTCACATTGTAGA
********** ********************************************** **
HS_haplotype1 GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA
HS_assemblymutate_np1212 GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA
HS_haplotype2 GCTCATCTACCCAGCCACTCCAATTCCCAGCCTGGGTTTTTACAAAAATTGTATGGAATA
************************************************************
HS_haplotype1 TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT
HS_assemblymutate_np1212 TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT
HS_haplotype2 TTATAGACAAATTTTGTTGGTGGACACTGCCCTACAGGTGTGACTGGAGATTGTGGAATT
************************************************************
HS_haplotype1 TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGATTTAAAACAA
HS_assemblymutate_np1212 TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGATTTAAAACAA
HS_haplotype2 TTGAGTACTATGTTTTCTCATGCAATTCTGAGTCAAGCCTGGATTACTGATTTAAATCAA
******************************************************** ***
HS_haplotype1 AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG
HS_assemblymutate_np1212 AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG
HS_haplotype2 AAGAAATATGCTCAGGCAGATATAGTGATATTACTTGAACCTCCAGGTGCTGTGCTGTTG
************************************************************
HS_haplotype1 TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA
HS_assemblymutate_np1212 TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA
HS_haplotype2 TTATAATTATGGTAGACCGAGAAGAGAATCCCTCCCTGAGATGGAGTGGCTTATAATTGA
************************************************************
HS_haplotype1 TTGGGTACCCAAGTAAATGTTCATTTGTTCTGCGTCCTGGCCCCATTAGTTTAAGTAGCT
HS_assemblymutate_np1212 TTGGGTACCCAAGTAAATGTTCATTTGTTCTGCGTCCTGGCCCCATTAGTTTAAGTAGCT
HS_haplotype2 GTGGGTACCCAAGTAAATGTTCATTTGTTCTACGTCCTGGCCCCATTAGTTTAAGTAGCT
****************************** ****************************
HS_haplotype1 GGAAGGGCCTGCACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA
HS_assemblymutate_np1212 GGAAGGGCCTGCACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA
HS_haplotype2 GGAAGGGCCTGAACTGGTATTATTGCTCTTTTTTAATAAGACGCCTGCATTTCATATAAA
*********** ************************************************
HS_haplotype1 TTGTCTCCAGGCCCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA
HS_assemblymutate_np1212 TTGTCTCCAGGCCCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA
HS_haplotype2 TTGTCTCCAGGCTCTCAAAGAAAATATTGTTTTTCCTATTAATAAATAATATCATTTCAA
************ ***********************************************
HS_haplotype1 CACAAGCAGTGGCTGTCTGTGGTCTTAGACCCCGGGGTTTTCATGTAGGTCTCTTGTGCC
HS_assemblymutate_np1212 CACAAGCAGTGGCTGTCTGTGGTCTTAGACCCCGGGGTTTTCATGTAGGTCTCTTGTGCC
HS_haplotype2 CACAAGCAGTGGCTGTCTGTGGTCTAAGACCCCGGGGTTATCAAGTAGGTCTCTTGTGCC
************************* ************* *** ****************
HS_haplotype1 CTGAACGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC
HS_assemblymutate_np1212 CTGAACGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC
HS_haplotype2 CTGAAGGAACTAAGAGCATGATGGGTGCCCTGCGTGAAAAAATCCATATCTTGAAGTGAC
***** ******************************************************
HS_haplotype1 TGGGGCTTACCGAAGGGAAGAGATTTCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA
HS_assemblymutate_np1212 TGGGGCTTACCGAAGGGAAGAGATTCCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA
HS_haplotype2 TGGGGGTAACAGAAGGGAAGAGATTCCTGCAAGTGACAAGGATATGGCCCGGCCTCAGCA
***** * ** ************** **********************************
HS_haplotype1 CGGTGGCATTAGAGAATGGGGACTAGTCTGGACGAGTAGTGCTGAGTGAACCACCCCAGC
HS_assemblymutate_np1212 CGGTGGCATTAGAGAATGGGGACTACTCTGGACGAGTAGTGCTGAGTGAACCAGCCCAGC
HS_haplotype2 CGGTGGCATTAGAGAATGGGGACTACTCTGGACGAGTAGTGCTGAGTGAACCAGCCCAGC
************************* *************************** ******
HS_haplotype1 AGGGATAGAGACATATCTGGTCTGGGCGGAACTTGGGTTCCACAACCCCGTCTGGGCTGA
HS_assemblymutate_np1212 AGGGATAGAGACATATCTGGTCTGGGAGGAACTTGGGTTCCACAACCCCGTCTGGGCTGA
HS_haplotype2 AGGGATAGAGACATATCTGGTCTGGGAGGAACTTGGGTTCCACAACCCCGTCTGGGCTGA
************************** *********************************
HS_haplotype1 GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCGTTTTTGACC
HS_assemblymutate_np1212 GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCATTTTTGACC
HS_haplotype2 GATAATATATTTGACTTTAAGTAGTTGCATAGTTAGACCTGGGTATTGTCATTTTTGACC
************************************************** *********
HS_haplotype1 TTACTATCTTCCAAGTGCATTAGTATTGGATCTACTAAGAACATTTACTAGTTCCAGCCC
HS_assemblymutate_np1212 TTACTATCTTCCAAGTGCATTAGTATTGGATCTGCTAAGAACATTTACTAGTTCCAGCCC
HS_haplotype2 TTACTATCTTCCAAGTGCATTAGTATTGGATCTGCTAAGAACATTTACTAGTTCCAGCCC
********************************* **************************
HS_haplotype1 ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA
HS_assemblymutate_np1212 ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA
HS_haplotype2 ACGCTATAATCCAAGAAAATTCCCTCTGGATGTAGCCCCAACAAGCATTGCTCTTATTAA
************************************************************
HS_haplotype1 ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT
HS_assemblymutate_np1212 ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT
HS_haplotype2 ATAACAGAATAGGCTGGCAGCGATTCTAGCCGGGAGTGAGGGAAAGGCATGTAAGCTTTT
************************************************************
HS_haplotype1 CCATCTGAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAAGTTTCAT
HS_assemblymutate_np1212 CCATCTGAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAAGTTTCAT
HS_haplotype2 CCATCTTAAAATCATAATTGGTCCAAAATATGCCTCCCTCTTTATAAATTCAAGTTTCAT
****** *****************************************************
HS_haplotype1 TGTCTACATGGGGATCCCAAAAAATTGGGATTAGTATGTATCTAAAAATGAGACTGAAGG
HS_assemblymutate_np1212 TGTCTACATGGGGATCCCAAAAAATTGGGATTAGTATGTATCTAAAAATGAGACTGAAGG
HS_haplotype2 TGTCTACATGGGGATCCAAAAAAATTGGGATTAGTATGTATCTAAAAATGAGACTGAAGG
***************** ******************************************
HS_haplotype1 TCTCCTGTCCAGTCAGACAAAATACTAGCCACCATAGGTTTCAAGAGTAGCGATCTTTTC
HS_assemblymutate_np1212 TCTCCTGTCCAGTCAGACAAAATACTAGCCACCATAGGTTTCAAGAGTAGGGATCTTTTC
HS_haplotype2 TCTCCTGTCCAGTCAGACAAAATACTAGCCACCATAGGTTTCAAGAGTAGGGATCTTTTC
************************************************** *********
HS_haplotype1 TTTTCTTCTCTCTGCGCCTAACAAAACTATATGAGACCTCCAGAACTTCTCAGCTCATCC
HS_assemblymutate_np1212 TTTTCTTCTCTCTGCGCCTAACAAAACTATATGAGACCTCCAGAACTTCTCAGCTCATCC
HS_haplotype2 TTTTCTTCTCTCTGCGCCTAGCAAAACTATATGAGAGCTCCAGAACTTCTCAGCTCATCC
******************** *************** ***********************
HS_haplotype1 TCATGTGTGGAACCATGTGGCTGGCGGTGAAAACTGACTCAAACGTCTAGAAATAAGCAC
HS_assemblymutate_np1212 TCATGTGTGGAACCATGTGGCTGGCGGTGAAAACTGACTCAAACGTCTAGAAATAAGCAC
HS_haplotype2 TCATGTGTGGATCGATGTGGCTGGCGGTGAAAACTGACTTAAACGTCTAGAAATAAGCAC
*********** * ************************* ********************
HS_haplotype1 ACTTACATATCCGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC
HS_assemblymutate_np1212 ACTTACATATCCGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC
HS_haplotype2 ACTTACATATCAGAATTGTATGTGAACTCTGATGAAACCACATTAGAAATAAGTATCCCC
*********** ************************************************
HS_haplotype1 TGGAATGAACCTTCAGTCGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT
HS_assemblymutate_np1212 TGGAATGAACCTTCAGTCGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT
HS_haplotype2 TGGAATGAACCTTCAGTGGTGGTGAGGTGCGTGTTTGAGCCACTGCGGTGAGCTGTGCCT
***************** ******************************************
HS_haplotype1 CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAATAGGACTTTGCTTGTTATCA
HS_assemblymutate_np1212 CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAATAGGACTTTGCTTGTTATCA
HS_haplotype2 CTCACTGCACATGCAAAAGAAACGTTGACAACTCCAATAAAAGGACTTTGCTTGTTATCA
**************************************** *******************
HS_haplotype1 GAACTCCTCATAATACAAATGCCACTTCACTTGAAATACGCACGTTTTTATACATATGGG
HS_assemblymutate_np1212 GAACTCCTCATAATACAAATGCCACTTCACTTGAAATACGCACGTTTTTATACATATGGG
HS_haplotype2 TAACTCCTCATAATACAAATGCCACTTCACTTGGAATACGCACGTTTTTATACATATGGG
******************************** **************************
HS_haplotype1 CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT
HS_assemblymutate_np1212 CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT
HS_haplotype2 CTGGGTGGCCCAGGCAGGGCTGTGTTGAAGTGAGGAATGCCTCCGTGTGCTGTAACTTAT
************************************************************
HS_haplotype1 TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTTGAA
HS_assemblymutate_np1212 TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTTGAA
HS_haplotype2 TTTAATGTTAATGAAGCTTCTTCTGAGGCACCAAAGTGCCTTTGGTAGAGTGCTCTTGAA
************************************************************
HS_haplotype1 TTTTGAAAGGCAGTAGCAAGAAATGGCAGATTGGTGGCCTCGCTAATTCACTTTGGAACT
HS_assemblymutate_np1212 TTTTGAAAGGCAGTAGCAAGAAATGGCAGATTGGTGGCCTCGCTAATTCACTTTGGAACT
HS_haplotype2 TTTTGAAAGGCAGTAGCAAGAAATGGCAGATTGGTGGCCTCGCTAATTCACTTTGGAACC
***********************************************************
HS_haplotype1 CCGGCCTGGGTCCTTGTGTGCCAGGGAGCCACTGTTAATATGGGCCGGCCGCTAATATTT
HS_assemblymutate_np1212 CCGGCCTGGGTCCTTGTGTGCCAGGGAGCCACTGTTAATATGGGCCGGCCGCTAATATTT
HS_haplotype2 CCGGCCTGGGTCCTTGTGTGCCAGGGAGCCACTGTTAATATGGGCCGGCCGCTAATATTG
***********************************************************
HS_haplotype1 TATCTCACTTTGTATTCCTCACCTAGAAAATAGTAGGACTGACAAACCCCGCCCGCCCTT
HS_assemblymutate_np1212 TATCTCACTTTGTGGTCCTCACCTACAAAAGGGTAGGACTGACAAACCCCGCCCGCCCTT
HS_haplotype2 TATCTCACTTTGTGGTCCTCACCTACAAAAGGGTAGGACTGACAAACCCCGCCCGCCCTT
************* ********** **** ****************************
HS_haplotype1 GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACTCCCCAGATTGATTA
HS_assemblymutate_np1212 GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACCCCCCAGATTGATTA
HS_haplotype2 GCCTGTCGTCAAAAAGTGCCCATGTAATCTTAACAGCAGATCGACCCCCCAGATTGATTA
********************************************* **************
HS_haplotype1 CAGCGTTAGGATGTATCCCAACATCTGAATTGCCGATAACAAAACAGGCTTCTATCAGCC
HS_assemblymutate_np1212 CAGCTTTAGGATGTATCCCAACATCTGAATTGCCGATAACAAAACAGGCTTCTATCAGCC
HS_haplotype2 CAGCTTTAGGATGTATCCCAACATCTGAATTGCCCATAACAAAACAGGCTTCTATCAGCC
**** ***************************** *************************
HS_haplotype1 TCCTGTGACAGGTGCTTGAAGCTCTATCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC
HS_assemblymutate_np1212 TCCTGTGACAGGTGCTTGAAGCTCTATCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC
HS_haplotype2 TCCTGTGACAGGTGCTTGAAGCTCTACCCAGGGTCTAGACAAAAGCCTCATAGATAAAGC
************************** *********************************
HS_haplotype1 ACGCCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGAGCATCTTGAT
HS_assemblymutate_np1212 ACGCCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGACCATCTTGAT
HS_haplotype2 ACGTCCGGCGTGAGAAAACAGCACCACCATGATATTGTTCACTTGAGTGACCATCTTGAT
*** ********************************************** *********
HS_haplotype1 TTAAGGCTCACTTAAATACATACTACCCTCCCATGCTAAAGCCACTCTCAAAAATCTGCT
HS_assemblymutate_np1212 TTAAGGCTCACTTAAATACATACTACCTTCCCATGCTAAAGCCACTCTCAAAAATCTGCT
HS_haplotype2 TTAAGGCTCACTTAAATACATACTACCTTCCCATGCTAAAGCCACTCTCAAAAATCTGCT
*************************** ********************************
HS_haplotype1 CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA
HS_assemblymutate_np1212 CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA
HS_haplotype2 CAGGGTTCCTGCCAAGAAATTAGAAAAGGCCGAGTATAGTTGAATGCAGCGTCGCTGCAA
************************************************************
HS_haplotype1 ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC
HS_assemblymutate_np1212 ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC
HS_haplotype2 ACTTCAATTCCAGAGTCAGCCACTGGAACCTGGCCGAGTGATGAGATCCTCCATGTAAAC
************************************************************
HS_haplotype1 AGTGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGTCCCTGCCTGTT
HS_assemblymutate_np1212 AGGGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGCCCCTGCCTGTT
HS_haplotype2 AGGGTCTGAGAAGGATTATCTCTCTATTAAGTCATGATATTATAATTGCCCCTGCCTGTT
** ********************************************* ***********
HS_haplotype1 CAAGGGGCGAGCCCGGCTCATGCTATTATATAGCATCTCAAGGTCCATTCTAGAAGGGGC
HS_assemblymutate_np1212 CAAGGGGCGAGCCCGGCTCATGCTATTTTATAGCATCTCAAGGCCCATTCTAGAAGGGGC
HS_haplotype2 CAAGGGGCGAGCCCGGCTCATGCTATTTTATAGCATCTCAAGGCCCATTCTAGAAGGGGC
*************************** *************** ****************
HS_haplotype1 TTCACAACACACGTGGATGAGAAATATAGCCTGAAACCTCTTCTTTGGAGGCTGAGTTCA
HS_assemblymutate_np1212 TTCACAACACACGTGGATGAGAAATATAGCCTGAAACCTCTTCTTTGGAGCCTGAGTTCA
HS_haplotype2 TTCACAACACACGTGGATGAGAAATATAGCCTGAAACCTCTTCTTTGGAGCCTGAGTTCA
************************************************** *********
HS_haplotype1 ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCTGAGT
HS_assemblymutate_np1212 ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCTGAGT
HS_haplotype2 ATATTGACATTTCTTGCGCGCTTCCTTTTCATTTATTTACAACACCAATGAGCCCAGAGT
******************************************************* ****
HS_haplotype1 GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT
HS_assemblymutate_np1212 GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT
HS_haplotype2 GAGCCTAGGAAGTCTGAAATTATCTTTCATACCACAAGCTGATTCATAGCATGGATGCCT
************************************************************
HS_haplotype1 AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA
HS_assemblymutate_np1212 AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA
HS_haplotype2 AAGATCAAGTCAGTTGTCATATTGCCGAGGCTGAGCACAATTCACCATCTGGGTGAGGAA
************************************************************
HS_haplotype1 TAAACAATGGTGGGAGCAATCCGGATCTTTTAATAGGATATGACTTAAATGACAGTTGGC
HS_assemblymutate_np1212 TAAACAATGGTGGGAGCAATCCGGATCTTTTAATAGGATATGACTTAAATGACAGTTGGC
HS_haplotype2 TAAACAATGGTGGGAGCAATCCGGATCTTTCAATAGGATATGACTTAAATGACAGTTGGC
****************************** *****************************
HS_haplotype1 TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACTTGGTACAAGTG
HS_assemblymutate_np1212 TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACATGGTACAAGTG
HS_haplotype2 TCACATAGCTTGCAGAAATAAAAACCTCAAATTATGGTAACCAATGACATGGTACAAGTG
************************************************ ***********
HS_haplotype1 CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCACCCAAATAATACCTGAGCCAAGAGG
HS_assemblymutate_np1212 CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCTCCCAAATCATACCTGAGCCAAGAGG
HS_haplotype2 CTGTTTCAGCTACTGTGACAAACTGAAAAAATGCTCCCAAATCATACCTGAGCCAAGAGG
********************************** ******* *****************
HS_haplotype1 CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG
HS_assemblymutate_np1212 CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG
HS_haplotype2 CCCTGCCAAGCACTCTTCCTCGCAAAGGCGGCTGACCAGTGTCTCTTCTGGGTCTGCAGG
************************************************************
HS_haplotype1 TGTAAAATATCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCCTTCTAAAATTAACA
HS_assemblymutate_np1212 TGTAAAATATCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCCTTCTAAAATTAACA
HS_haplotype2 TGTAAAATATCTATCATGTGATCCTGAATGTGTTAGGTTCAAGGCCTTCTAAAATTAACA
************************************************************
HS_haplotype1 TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT
HS_assemblymutate_np1212 TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT
HS_haplotype2 TATTTAGACAGGAGAGAGTGTGCAACAATAACCTACAAAAAGTTAATCTGAAGTCAGCAT
************************************************************
HS_haplotype1 ATATAGAATTTTGGGAGTGATGACTACAAAAAAAGAGAAACACACTTTCCAAATTGAGAT
HS_assemblymutate_np1212 ATATACGATTTTGGGAGTGATGACTACAAAAAAAGAGAAACACACTTTCTAAATTGAGAT
HS_haplotype2 ATATACGATTTTGGGAGTGATGACTACAAAAAAGGAGAAACACACTTTCTAAATTGAGAT
***** ************************** *************** **********
HS_haplotype1 GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT
HS_assemblymutate_np1212 GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT
HS_haplotype2 GTGTAAAAAGGAGCCCTGACCTCACGCCATATACATTATCCCCTACAAATGCCTTTGTTT
************************************************************
HS_haplotype1 GCAGTAATCTTATATTCTTTGCTTAGCTGTTCCAACATACTTTTATAAGAAAAGGACAAA
HS_assemblymutate_np1212 GCAGTAATCTTATATTCTTTGCTTAGCTGTTCCAACATACTTTTATAAGTAAAGGACAAA
HS_haplotype2 GCAGTAATCTTATATTCTTTGCTCAGCTGTTCCAACATACTTTTATAAGTAAAGGACAAA
*********************** ************************* **********
HS_haplotype1 TAATGAGCTTAAAGGATCGCAGCCCCCGAGGACATCGTTAGGTCTCTCCATTGGCCTTTT
HS_assemblymutate_np1212 TAATGTGCTTAAAGGATCACAGCCCCCGAGGACATCGTTAGGTCTCTCCCTTGGCCTTTT
HS_haplotype2 TAATGTGCTTAAAGGATCACAGCCCCCGAGGACATCGTTAGGTCTCTCCCTTGGCCTTTT
***** ************ ****************************** **********
HS_haplotype1 TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT
HS_assemblymutate_np1212 TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT
HS_haplotype2 TGGACTAACATCCACAAATTCCAATTTTTTAAAACTGTCTCAGCCTCTGCAAGGCATGAT
************************************************************
HS_haplotype1 GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT
HS_assemblymutate_np1212 GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT
HS_haplotype2 GTCCTGAGCAATGCATGGCAAGTGATTCTAAACCCAATCATGTTGATTCCATGTAGAACT
************************************************************
HS_haplotype1 ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA
HS_assemblymutate_np1212 ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA
HS_haplotype2 ATTATTGTGTACCCCAATGACGTTGAGAGGTAATTGCACATAATGCCACCTTGCAGAGAA
************************************************************
HS_haplotype1 TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTCTATGTAACAAATAA
HS_assemblymutate_np1212 TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTCTATGTAACAAATAA
HS_haplotype2 TGGCGGGCAGGACACTCAGCTTCCCAAAAATGCTGGAATTATTCTGTATGTAACAAACAA
********************************************* *********** **
HS_haplotype1 TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA
HS_assemblymutate_np1212 TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA
HS_haplotype2 TTCAAGAAAGAAGCAGGGACCCAGGCGCCGGCTACTACTACTATGCCATTCAACTACTTA
************************************************************
HS_haplotype1 GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA
HS_assemblymutate_np1212 GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA
HS_haplotype2 GGAAGTGTTATGTGCGCATTTTCTAGTGCATCTTTTGCAGAGAGTTCTCATCACTTCAAA
************************************************************
HS_haplotype1 GTGCTAATATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG
HS_assemblymutate_np1212 GTGCTACTATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG
HS_haplotype2 GTGCTACTATCAAACACTCTGACGGATGTGGGAACACTTCATGGACTAGTCTGTAGAGTG
****** *****************************************************
HS_haplotype1 TCTCTACAAGCCACCGCATGGTGGCGGACTTTCAGACTCGGGGAGGTGTTTTTAAGACCA
HS_assemblymutate_np1212 TCTCTACAAGCCACGGCATGGTGGCGGACTTTCAGACTCGGGGAGGTGTTTTTAAGACCA
HS_haplotype2 TCTCTACAAGCCACGGCATGGTGGCGGACTTTCAGACTCGGGGAGGTGTTTTTAAGACCA
************** *********************************************
HS_haplotype1 AAAGAGAAGCCTCATTATGACTCTTGTATTTATAAATGCAACCATACTTGAGAATCCCAT
HS_assemblymutate_np1212 AAAGAGAAGCCTCATTATGACTCTTGTATTTATAAATGCAACCATACTTGAGAATCCCAT
HS_haplotype2 AAAGAGAAGCCTCATTATGACTCTTGTATTTATAAATGCAACCATACTTGAGAATCCCAT
************************************************************
HS_haplotype1 TTTATTGTCCTTCGATTGAGAGGTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGCCAGT
HS_assemblymutate_np1212 TTTATTGTCCTTCGATTGAGAGGTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGCCAGT
HS_haplotype2 TTTATTGTCCTTCGATTGAGAGGTGCTGGAAGTGGTGTCTATTGCTCTTGCCAAGCCAAT
********************************************************** *
HS_haplotype1 GTGTAGGAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTGGAATGGAA
HS_assemblymutate_np1212 GTGTAGGAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTGGAATGGAA
HS_haplotype2 GTGTAGAAATCTGAGGCACACATGGTTGCCATGCACTGAAATGTTTTGTCTTGATTGGAA
****** ******************************************** ** *****
HS_haplotype1 AGGCTGGGCCACTATAAAATCCCTTCGATCTATTGAGTCAGTTAGATAAATTTTAGAATT
HS_assemblymutate_np1212 AGGCTGGGCCAGTATAAAATCCCTGCGATCTATTGAGTCAGTTAGATAAATTTTAGAATT
HS_haplotype2 AGGCTGGGCCAGTATAAAATCCCTGCGATCTATTGAGTCAGTTAGATAAATTTTAGAATT
*********** ************ ***********************************
HS_haplotype1 CCTCAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAATGGACCTC
HS_assemblymutate_np1212 CCTCAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAAGGGACCTC
HS_haplotype2 CCTCAGTTTCATTATGAATAATAAAGGAAGTATAAGCATTCTCCATAACTAAGGGACCTC
**************************************************** *******
HS_haplotype1 ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCTTTTTAATTTACTACATAGGAGCTTG
HS_assemblymutate_np1212 ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCCTTTCAATTTACTATATAGGAGCTTG
HS_haplotype2 ATGTATGCCGCGCCCAGGTAGAGTGGCAGGGCCCCTTTCAATTTACTATATAGGAGCTTG
********************************** *** ********* ***********
HS_haplotype1 CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGCTTCATTTGT
HS_assemblymutate_np1212 CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGTTTCATTTGT
HS_haplotype2 CTTGTTGGTCCACAGCTCTTCACATAATATCTCAATCACCCCTTAGAATGTTTCATTTGT
************************************************** *********
HS_haplotype1 GGCAAGATATACCATGACTAGTCATACAAATTCTTCTAGTTATAAGTGCTCACAATTTCT
HS_assemblymutate_np1212 GGCAAGATATACCATGACTAGTCATACAAAGTCTTCTAGTTATAAGTGCTCACAATTTCT
HS_haplotype2 GGCAAGATATACCATGACTAGTCATACAAAGTCTTCTAGTTATAAGTGCTCACAATTTCT
****************************** *****************************
HS_haplotype1 AAGACAGCAACAACACCGCCACTTTTCTGAGGCTGTCTTACAGGCACTCAGGAAACATCC
HS_assemblymutate_np1212 AAGACAGCAACAACACCGCCACTTTTCTGAGGCTGTCTTACAGGCACTCAGGAAACATCC
HS_haplotype2 AAGACAGCAACAACACCGCCACTTTTCTGAGGCTGTCTTACAGGCACTCAGGAAACATCA
***********************************************************
HS_haplotype1 GAGGCAGACTATATTCAAACTCCCTTAACTCCATAATGTTTTAAGCAAAAAGTGAAGCTG
HS_assemblymutate_np1212 GAGGCAGACTATATTCAAACTCCCTTAACTCCATAATGTTTTAAGCAAAAAGTGAAGCTG
HS_haplotype2 GAGGCAGACTATATTCAAACTCCCTTAACTCCATATTGTTTTAAGCAAAAAGTGAAGCTG
*********************************** ************************
HS_haplotype1 GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT
HS_assemblymutate_np1212 GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT
HS_haplotype2 GGAAAGCCATACACTGACTCACTGCAGGTTCAGATTTAATATATGCCTTCAGCCTGACTT
************************************************************
HS_haplotype1 GTTTAATAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGCGGGAGTTCTCTCGG
HS_assemblymutate_np1212 GTTTATTAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGCGGGAGTTCTCTCGG
HS_haplotype2 GTTTATTAAAACCATCATAGAAATAAAGTCACTTCTTTATTGGAGTGGGAGATCCCTCGG
***** *************************************** ***** ** *****
HS_haplotype1 CTCTTCTGGCTTGCTCCCCATAGATATAGTTTCCATGTAAAATAACTGCCAGCTGGCCAG
HS_assemblymutate_np1212 CTCTTCTTGCTTGCTCCCAATAGATATAGTTTCCATGTAAAATAACTGCCAGCTGGCCAG
HS_haplotype2 CTCTTCTTGCTTGCTCCCAATAGATATAGTTTCCATGTAAAATAACTGCCAGCTGGCCAG
******* ********** *****************************************
HS_haplotype1 ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT
HS_assemblymutate_np1212 ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT
HS_haplotype2 ACAGGTTCAGCCTGGCAACTGGTGGCGCAGGTGAAAGACTCTGGGTGTCTTTGGAATAAT
************************************************************
HS_haplotype1 CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC
HS_assemblymutate_np1212 CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC
HS_haplotype2 CCATCTCCTGAATAAGCAAGATGGAATATTTTGATAGTTTCCTACATCTTTCTAATTAGC
************************************************************
HS_haplotype1 TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT
HS_assemblymutate_np1212 TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT
HS_haplotype2 TAAGTGGCTCACATCAAATACTATAGGTTGTGTGAGAAAGAACACATCCACAGTGGCAGT
************************************************************
HS_haplotype1 TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATCTTTGAGCAGCGGGTGGT
HS_assemblymutate_np1212 TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATCTTTGAGCAGCGGGTGGT
HS_haplotype2 TTCTCTTATAGTAGGAAACTCCCTTCCGGGAGGCCATTACATTTTTGAGCAGCTGGTGGT
****************************************** ********** ******
HS_haplotype1 GTTGGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATTTTACCCATTT
HS_assemblymutate_np1212 GTTGGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATTTTACCCATTT
HS_haplotype2 GTTGGGAGAGTATCTTTCATGGCACTCAAAATGAAGCAACTCTTTGTATCTTACCCATTT
************************************************* **********
HS_haplotype1 CCAGCCTGGGTGCAGACCCCCCCCAGCCTGTGTTTGGAGGTTCTGGCTCCACATCAGAGG
HS_assemblymutate_np1212 CCAGCCTGGGTGCAGACCCCCCCCAGCCTGTGTTTGGAGGTTCTGGCTCCACATCAGAGG
HS_haplotype2 CCAGCCTGGGTGCAGACCCCCCCCAGCCTGGGTTTGGAGGTTCTGGCTCCACATCAGAGG
****************************** *****************************
HS_haplotype1 CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT
HS_assemblymutate_np1212 CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT
HS_haplotype2 CAAGTTAGCTGCCTCCCAGCACACCAGGCGGCCTCTATGCTATTAAGGTAAAATATCCCT
************************************************************
HS_haplotype1 GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGTAGCTGCACTGCAGGCTGAGCTATA
HS_assemblymutate_np1212 GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGTAGCTGCACTGCAGGCTGAGCTATA
HS_haplotype2 GTGTGGGTGACTGGTGAACTCTTCTAAAAAGTCTGGAGCTGCACTGCAGGCTGAGCTATA
*********************************** ************************
HS_haplotype1 AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA
HS_assemblymutate_np1212 AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA
HS_haplotype2 AGTTCAATTCAGCCCTCCTGAGTAAAATAAAGAGAAGAGGGGCAGGGATTACAGTACCAA
************************************************************
HS_haplotype1 CACGACCCACAGGAGAGATTTTCAAAAAGAATTTTTTGTCTTCAAAATAATATTTAATCC
HS_assemblymutate_np1212 CACGACCCACAGGAGAGATTTTCAAAAAGAATTTTTTGTCTTCAAAATAATATTTAATCC
HS_haplotype2 CACGACCCACAGGAGAGATTTTCAAAAAGAATTTTTTGTCTTCATAATAATATTTAATCC
******************************************** ***************
HS_haplotype1 ATGAATTTTAGATGTTCTCTTCCTGGGACAAAAGTTGGCAGAAGATAAATTTAACATCCC
HS_assemblymutate_np1212 ATGAATTTTAGATGTTCTCTACCTGGGACAAAAGTTGGCAGAAGATAAATTTAACAGCCC
HS_haplotype2 ATGAATTTTAGATGTTCTCTACCTGGGACAAAAGTTGGCAGAAGATAAATTTAACAGCCC
******************** *********************************** ***
HS_haplotype1 CACTTCAAATACCCTTGGCAGGAACACACCGTTTCTTAATATCTGCAACTGCAGCTAGCG
HS_assemblymutate_np1212 CACTTCAAATACCCTTGGCCGGAACACACCGTTTCTTAATATCTGCAACTGCAGCAAGCG
HS_haplotype2 CACTTCAAATACCCTTGGCCGGAACACACCGTTTCTTAATATCTGCAACTGCAGCAAGCG
******************* *********************************** ****
HS_haplotype1 GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT
HS_assemblymutate_np1212 GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT
HS_haplotype2 GCTTCTAAATCTGGAGGAGTGTATACATTTCACTAGCATCTCTGGCCTCATTTGCAGCCT
************************************************************
HS_haplotype1 CTCAATTATTGGACGCTGGCTAAGCTTCTTGAGACATATGTGGTTGTTTTTCTCCCAGTA
HS_assemblymutate_np1212 CTCAATTATTGGACGCTGGCTAAGCTTTTTGAGACATATGTGGTTGTTTTTCTCCCAGTA
HS_haplotype2 CTCAATTATTGGACGCTGGCTAAGCTTTTTGAGACATATGTGGTTGTTTTTCTCCCAGTA
*************************** ********************************
HS_haplotype1 ACAAAGGAAATAAAGTTAACTTGGGGGATTGATCGCCCTATGTATTTTAAAACTTGAAGA
HS_assemblymutate_np1212 ACAAAGGATATAAAGTTAACTTGGGGGATTGATCACCCTATGTATTTTAAAACTTGAAGA
HS_haplotype2 ACAAAGGATATAAAGTTAACTTGGGGGATTGATCACCCTATGTATTTTAAAACTTGAAGA
******** ************************* *************************
HS_haplotype1 CCTTTTGCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTGCCTATCAGACATGGAAAC
HS_assemblymutate_np1212 CCTTTTCCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTACCTATCAGACATGGAACC
HS_haplotype2 CCTTTTCCAGGAATTCTGAACTGTCCTCCTGCCTGGCACGTACCTATCAGACATGGAACC
****** ********************************** **************** *
HS_haplotype1 TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG
HS_assemblymutate_np1212 TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG
HS_haplotype2 TATGCTGTCCCACACACAATTACAAGAGGAAGTTAACCACAAATGTTAAGAAGCATCTTG
************************************************************
HS_haplotype1 CAATCAGGTCTCCCTTCTTCCTGGGAATCAAACCACAGCTCCCCCGTTACTCAATATATT
HS_assemblymutate_np1212 CAATCAGGTCTCCCTTCTTCCTGGGGATCAAACCACAGCTCCCCCGTTCCTCAATATATT
HS_haplotype2 CAATCAGGTCTCCCTTCTTCCTGGGGATCAAACCACAGCTCCCCCGTTCCTCAATATATT
************************* ********************** ***********
HS_haplotype1 TTACCTCATCCCACCCCGCGGTGCAGTCACCATGGATATTTGCAAAGTGACTGCTTTTGA
HS_assemblymutate_np1212 TTACCTTATCCCACCCCTCGGTGCAGTCACCATGGATATTTGCAAAGTGACTGCTTTTGA
HS_haplotype2 TTACCTTATCCCACCCCTCGGTGCAGTCACCATGGATATTTGCAAAGTGACTGCTTTTGA
****** ********** ******************************************
HS_haplotype1 GGCACAGTAACTTTCTGGGCTATGAGTAAGTATTTTCTTAACATCACATTGCGGAGCACC
HS_assemblymutate_np1212 GGCACAGTAACTTTCTGGGCTATGAGTAAGTATTTTCTTAACATCACATTGCGGAGCACC
HS_haplotype2 GGCACAGTAACTTTCTGGGCTATGAGTAAGTATTTTCTTAACATCACATTGCTGAGCACC
**************************************************** *******
HS_haplotype1 ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGCGGGCTCC
HS_assemblymutate_np1212 ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGCGGGCTCC
HS_haplotype2 ACAATGAGTCCTGAAGGTTTTGCAGGTGAGACTACTAGGATTCTCTCTACAGCGGGCTCC
************************************************************
HS_haplotype1 ACACTGTTATATTTGAGACATTCTCAAGCCTAGCCATGAAGTTCTTTGTTTTACAAAAAC
HS_assemblymutate_np1212 ACACTGTTATATTTGAGACATTCTCAAGCCTAGCCATGAAGTTCTTTGTTTCAAAAAAAC
HS_haplotype2 ACACTGTTATATTTGAGACATTCTCCAGCCTAGCCATGAAGTTCTTTGTTTCAAAAAAAC
************************* ************************* * ******
HS_haplotype1 GGGGGCTCAGTTCTAAGAGGCTTATTTAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG
HS_assemblymutate_np1212 GGGGGCTCAGTTCTAAGAGGCTTATTGAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG
HS_haplotype2 GGGGGCTCAGTTCTAAGAGGCTTATTGAACTTTGTTGCCCACCTTTCTAAGGCATTCCTG
************************** *********************************
HS_haplotype1 GCCTATCTGCCTACCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT
HS_assemblymutate_np1212 GCCTATCTGCCTATCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT
HS_haplotype2 GCCTATCTGCCTATCATGCCAACTGTAATAAGACACCCAGTGAATTGCAACTTTTGTTTT
************* **********************************************
HS_haplotype1 TCAAGCCAAGCCGGATATTAACACACACTGGAGGCTGCTACCCATAACACACCCTGACAT
HS_assemblymutate_np1212 TCAAGCCAAGCCGGATATTAACACACACTGGAGGCTGCTACCCATAACACACCCTGACAT
HS_haplotype2 TCAAGCCAAGCCGGATATTAACACACACAGGAGGCTGCTACCCATAACACACCCTGACAT
**************************** *******************************
HS_haplotype1 AACTTAAGGCCCCTTATCATTAACCAAGCTAATACTGTTCTAAGTGCTGCAGTGGCCAGC
HS_assemblymutate_np1212 AACTTAAGGCCCCTTATCATTAACCAAGCTAATACTGTTCTAAGTGCTGCAGTGGCCAGC
HS_haplotype2 AACTTCAGCCCCCTTATCATTAACCAAGCTAATCCTGTTCTAAGTGCTGCAGTGGCCAGC
***** ** ************************ **************************
HS_haplotype1 CAAAAGGGTTGCTGAGACCAGCCAAAATAACACCAAAGAAATAATCCAGTGCTCCAGCAA
HS_assemblymutate_np1212 CAAAAGGGTTGCTGAGACCAGCAAAAATAACACCAAAGAAATAATCCAGTGCTCCAGCAA
HS_haplotype2 CAACAGGGTTGCTGAGACCAGCAAAAATAACACCAAAGAAATAATCCAGTGCTCCAGCAA
*** ****************** *************************************
HS_haplotype1 GGCATCTCCACAACAAGGCCTGTTCTTTCTTAGTTAAAAATGGCAATATCATTATACAAA
HS_assemblymutate_np1212 GGCATCTCCACAACAAGGCCTGTTCTTTCTTACTTAAAAATGGCAATATCATTATACAAA
HS_haplotype2 CGCATCTCCACAACAAGGCCTGTTCTTTCTTACTTAAAAATGGCAATATCATTATACAAA
******************************* ***************************
HS_haplotype1 AAGAGTTAATCCCAGGCTGGGGGTGATCTATTTGTGATCCTTCCCCGGCCTCCCAGGCTC
HS_assemblymutate_np1212 AAGAGTTAATCCCAGGCTGGGGGTAATCTATTTGTGATCCTTCCCCGGCCTCCCAGGCTC
HS_haplotype2 AAGAGTTAATCCCAGGCTGGGGGTAATCTATTTGTGATCCTTCCCCGGCTTCCCAGGCTC
************************ ************************ **********
HS_haplotype1 ACTGCAGAGATAAAAGAAAGATTTGTAGATGAGGCATGGTGATTCGGTTGTAGTTGCCCT
HS_assemblymutate_np1212 ACTGCAGAGATAAAAGAAAGATTTGTAGATGAGGCATGCTGATTCGGTTGTAGTTGCCCT
HS_haplotype2 ACTGCAGAGATAAAAGAAAGATTTGTAGATGAGGCATGCTGATTCGGTTGTAGTTGCCCT
************************************** *********************
HS_haplotype1 CCTGTAGCTCATCCAAACAAAACCTCTTTCATATAATTGGCAGGCATCTATAGCATCAAT
HS_assemblymutate_np1212 CCTGTAGCTCATCCAAACAAAACCGCTTTCATATAATTGGCAGGCATCTATAGTATCAAT
HS_haplotype2 CCTGTAGCTCATCCAAACAAAACCGCTTTCATATAATTGGCAGGCATCTATAGTATCAAT
************************ **************************** ******
HS_haplotype1 AGTCCCATAAGTGATACAAACCAGGCTAGCTGACCCTCCTCCCGAATCACGCTCCAGTGA
HS_assemblymutate_np1212 AGTTCCATAATTGATACAAACCAGGCTAGGTGACCCTCCTCCCGAATCACGCTCCAGTGA
HS_haplotype2 AGTTCCATAATTGATACAAACCAGGCTAGGTGACCCTCCTCCCGAATCACGCTCCAGTGA
*** ****** ****************** ******************************
HS_haplotype1 GTAGCCCAGGGTCGTGAGTGCTGTGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA
HS_assemblymutate_np1212 GTAGCCCAGGGTCGTGAGTGCTGCGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA
HS_haplotype2 GTAGCCCAGGGTCGTGAGTGCTGCGCCGTCCCAGCATAGCTGGGCATTTGTAGAGTGATA
*********************** ************************************
HS_haplotype1 TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG
HS_assemblymutate_np1212 TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG
HS_haplotype2 TAGGGACACCCACTGGACCCACCTTTTTAGTAGATTCAGCCTGGCTGCAACGTGCACAGG
************************************************************
HS_haplotype1 GACATCTCTATGAGAAGGGGTGGGACTCCACTGGACCCAGGGTCCCACAGGCTGTCTTGT
HS_assemblymutate_np1212 GACATCTCTATGAGAAGGGGTGAGACTCCACTGGACCCAGGGTCCCACAGGCTGTCTTGT
HS_haplotype2 GACATCTCTATGAGAAGGGGTGAGACTCCACTGGACCCAGGGTCCCACAGGCTGTCTTGT
********************** *************************************
HS_haplotype1 CCCATAGACAGGGCTCTCACCACATCAACTTGCCTGATTAAGAGGCAGAGCAAACTAGAG
HS_assemblymutate_np1212 CCCATAGACAGGGCTCTCACCACTTCAACTGGCCTGATTAAGAGGCAGAGCATACTAGAG
HS_haplotype2 CCCATAGACAGGGCTCTCACCACTTCAACTGGCCTGATTAAGAGGCAGAGCATACTAGAG
*********************** ****** ********************* *******
HS_haplotype1 TGCCTTTTCTTGAGCCAGAGTAATAGGCATACTTATCTCATAGGTGAAAAAACTCAGCCT
HS_assemblymutate_np1212 TGCCTTTTCTTGAGCCAGAGTAATAGGCCTACTTATCTCATAGGTGAAAAAACTCAGCCT
HS_haplotype2 TGCCTTTTCTTGAGCCAGAGTAATAGGCCTACTTATCTCATAGGTGAAAAAACTCAGCCT
**************************** *******************************
HS_haplotype1 CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA
HS_assemblymutate_np1212 CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA
HS_haplotype2 CCCAGCTATGACATTCATGAATAAATAAGCAACAGAATGGCTCACTGCCTTGTCTGAAGA
************************************************************
HS_haplotype1 GGGTAATTGTGGTAGAGGAGTCAGGAGGGTTTCTCCCTCAAAAGAGGTGCTTGAGGCATG
HS_assemblymutate_np1212 GGGTAATTGTGGTAGAGGAGTCAGGAGGGTTTCTCCCTCAAAAGAGGTGCTTGAGGCATG
HS_haplotype2 GGGTAATTGTGGTAGAGGAGTCAGTAGGGTTTCTCCCACAAAAGAGGTGCTTGAGGCATG
************************ ************ **********************
HS_haplotype1 CTCAATTTGGCACCAGAAGTCAAAAATAAAATAAACAATGTTGAATAACTGCCAACCCCT
HS_assemblymutate_np1212 CTCAATTTGGCACCAGAAGTCAAAAATAAAATAAACAATGTTGAATAACTGCCAACCCCT
HS_haplotype2 CTCAATTTGGCACCACAAGTCAAAAATAGAATAAACAATGTTGAATAACTGCCAACCCCT
*************** ************ *******************************
HS_haplotype1 TTTCCAGCATGAACATAGTGATAATGGTGCCAGACCCCATAATGGGACCACGAAGAAACA
HS_assemblymutate_np1212 TTTCCAGCATGAACATAGTGATAATGGTGCCAGACCCCATAATGGGACCACGAAGAAACA
HS_haplotype2 TTTCCAGCATGAACATAGAGATAATGGTGCCAGACCCCATAATGGGACCACAAAGAAACA
****************** ******************************** ********
HS_haplotype1 TTGTACTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG
HS_assemblymutate_np1212 TTGTACTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG
HS_haplotype2 TTGTAGTTAACAGTCAATAATCCTAGCTGGAAGAGCTCGCCACACAGTTATGGTGGCTGG
***** ******************************************************
HS_haplotype1 GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT
HS_assemblymutate_np1212 GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT
HS_haplotype2 GAAACACTTCTCCTTCCTTTTAATTCCGTTACATAAAAAGGTAAAATGTAAACCTCTGCT
************************************************************
HS_haplotype1 TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG
HS_assemblymutate_np1212 TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG
HS_haplotype2 TGAGAAGAAGTACACAAGGTGGGTCAACAGTTACTCTTCCCTCCAGTGGGCAAGAGACCG
************************************************************
HS_haplotype1 CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGAAATAATATATTGTAG
HS_assemblymutate_np1212 CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGAAATAATATATTGTAG
HS_haplotype2 CCTGGAGAAATGTCGAATGCATACCTCATTATCATAATGATGTGACATAATATATAGTAG
********************************************* ********* ****
HS_haplotype1 GGGCAAGCCACATGGGAGAGGCGGAGAACGAGTGTGTGCAGAGTTTCATCACTGATAAAT
HS_assemblymutate_np1212 GGGGAAGCCACATGGGAGAGGCGGAGAACGAGTGTGTGCAGAGTTTCATCACTGATAAAT
HS_haplotype2 GGGGAAGCCACATGGGAGAGGCGGAGAAAGAGTGTGTGCAGAGTTTCATCACTGATAAAT
*** ************************ *******************************
HS_haplotype1 AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAACAACCATTGGCTCTCTTAAATG
HS_assemblymutate_np1212 AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAACAACCATTGGCTCTCTTAAATG
HS_haplotype2 AAATCCCAGTCCCAGCGGGCCCCTCCCCGGGCCTCCAAGAACCATTGGCTCTCCTAAATG
************************************** ************** ******
HS_haplotype1 GCGGGCGCGACCAGCCTGGAGAGCTGACAAATTTCATCTTGAGGTTTTGTTGGAATTGAG
HS_assemblymutate_np1212 GCGGGCGCGACCAGCCTGGAGAGCTGACAAATTTCATCTTGAGGTTTTGTTGGAATTGAG
HS_haplotype2 GCGGGCGCGACCAGCCTAGAGAACAGACAAATTTCATCTTGAGGTTTTGATGGAATTGAG
***************** **** * ************************ **********
HS_haplotype1 CAAATACTGGGGATTCACCTCTGAAAGGAAGTTTCAGTGCGCAGGCCTTGTTAGCTTTAG
HS_assemblymutate_np1212 CAAATACTGGGGATTCACCTCTGAAAGGAAGTTTCAGTGCGCAGGCCTTGTTAGCTTTAG
HS_haplotype2 CAAATACTGGGGATTCACCTCTGAAAGGAAGTTTCCGTGCGCAGGCCTTGTTATCTTTAG
*********************************** ***************** ******
HS_haplotype1 TTGAGATCATGAAAATTTTTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC
HS_assemblymutate_np1212 TTGAGATCATGAAAATTATTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC
HS_haplotype2 TTGAGATCATGAAAATTATTATTCATTATCTCATGAATTATCTGTCTCTATTCTTTCTTC
***************** ******************************************
HS_haplotype1 TGGGGGAGGGCCGTTCATGTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC
HS_assemblymutate_np1212 TGGGGGAGGGCCGTTCATGTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC
HS_haplotype2 TGGGGGAGGGCCGTTCATTTCTACCAGCCTGGAATAATTGCAATCCTTTTCTATAGCTTC
****************** *****************************************
HS_haplotype1 TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT
HS_assemblymutate_np1212 TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT
HS_haplotype2 TTGTTTAATCCACTCGGGGCAGAATAATATATAATAACTCATTTAATGGAGTGAGATGCT
************************************************************
HS_haplotype1 AAGCTTGCTTGGGCTTGGAAGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGGCAAAGT
HS_assemblymutate_np1212 AAGCTTGCTTGGGCTTGGAAGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGGCAAAGT
HS_haplotype2 AAGCTTGCTTTGACTTGGAGGCGCTGCTCTTGCCATAGCTATATTTTAAGTTGTCAAAGT
********** * ****** ********************************* ******
HS_haplotype1 GTTATTCTGGGAGGCATACAAGATTTTCATCCCAACTGTAAGTGACTCAGCAGAATAACT
HS_assemblymutate_np1212 GTTATTCTGGGAGGCATACAAGATTTTCATCCCAACTGTAAGTGACTCAGCAGAATAACT
HS_haplotype2 GTTATTCTGGGTGGCATACAAGATTTTCATCCCAAATGTAAGTGACTCAGCAGAATAACT
*********** *********************** ************************
HS_haplotype1 GGAGGAAAAATAATAAATAATACAGGAAGAGTACCCTGCCCAGCACTCCGTCACGGAGTG
HS_assemblymutate_np1212 GGAGGAAAAATAATAAATAATACAGGAAGAGTACCCTGCCCAGCACTCCGTCACGGAGTG
HS_haplotype2 GGAGGAAAAATAATAAATAATTCAGGAAGAGTACCCTGCCCAGCACTCCCTCACGGAGTG
********************* *************************** **********
HS_haplotype1 TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCCGAGAGGATCA
HS_assemblymutate_np1212 TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCCGAGAGGATCA
HS_haplotype2 TCGGCGGACAGTTTGACATTCTAGTAGCTAAATACCCTGCTTTGGTCCCGGAGAGGATCT
************************************************* *********
HS_haplotype1 GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTGATTGCCTAGGTAATAGC
HS_assemblymutate_np1212 GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTGATTGCCTAGGTAATAGC
HS_haplotype2 GTCTCTCCAGCCTGGGGGGATGCTGGGCAAACATTCACAATTTATTGCCTAGGTAATAGC
****************************************** *****************
HS_haplotype1 AATCACGCGGCGTGCCATATACATGGCTCTAAATGCTTTGAAAGTATGCTCACTGGAGAA
HS_assemblymutate_np1212 AATCACGCGGCGTGCCATATACATGGCTCTAAATGCTTTGAAAGTATGCTCACTGGAGAA
HS_haplotype2 AATCACGCGGCGTGCCATATACATGGCTCTAAATGCTTTGAAAGTATGCTCACTGGAGAA
************************************************************
HS_haplotype1 CAGGTTAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC
HS_assemblymutate_np1212 CAGGTTAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC
HS_haplotype2 CAAGTTAGACCTTTCATTTGCTAGGGATGTGAAAAGTGCACCTGGAGACCCCCAAACACC
** *********************************************************
HS_haplotype1 TCACAACCTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG
HS_assemblymutate_np1212 TCACAACTTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG
HS_haplotype2 TCACAACTTTCCTATTCACGACTTCCCTCAATTTCTGTGCACTCTTCACCATAATGGCAG
******* ****************************************************
HS_haplotype1 AGCAATGGAAAAACTGGCTGCGATTCCATCTTATTTATCATATGCGCACGTACTCAGCAC
HS_assemblymutate_np1212 AGCAATGGAAAAACTGGCTGAGATTCCATTTTATTTATCATATGCGCACGTACTCAGCAC
HS_haplotype2 AGCAATGGAAAAACTGGCTGAGATTCCATTTTATTTATCATATGCGCACGTACTCAGCAC
******************** ******** ******************************
HS_haplotype1 TTCTTCATCAACCCGGGCCACTAGTCTTCTTAAGATCACCGCGGAGTCCTTCGCAGCCCT
HS_assemblymutate_np1212 TTCTTCATCAACCCGGGCCACTGGTCATATTAAGATCACCGCGGAGTCCTTCCCAGCCCT
HS_haplotype2 TTCTTCATCAACCCGGGCCACTGGTCATATTAAGATCACCGCGGAGTCCTTCCCAGCCCT
********************** *** * *********************** *******
HS_haplotype1 TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGCGTGGGGCGCCTGTTTGC
HS_assemblymutate_np1212 TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGAGTGGTGCGCCTCTTTGC
HS_haplotype2 TATCAGACGGGATTGCTGTTCTATGGGAACTTAAGAAAAAGGAGTGGTGCGCCTCTTTGC
****************************************** **** ****** *****
HS_haplotype1 TGCGCTCTGCAGGTAACGTTTGATTGTTTCCCAACCATGAGGTTATTTAACATGTGTGCG
HS_assemblymutate_np1212 TGCGCTCTGCAGGTAACGTTTGCTTGTTTCGCAACCATGAGGTTATTTAACATGTGTGCG
HS_haplotype2 TGCGCTCTGCAGGTAACGTTTGCTTGTTTCGCAACCATGAGGTTATTTAACATGTGTGCG
********************** ******* *****************************
HS_haplotype1 CAACCTGGGAGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCGCCACATTGAGTCTTGTG
HS_assemblymutate_np1212 CAACCTGGGCGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCCCCACATTGAGTCTTGTG
HS_haplotype2 CAACCTGGGCGCCAAGATTTTAGAGGGCTGTGTTTGAGTGTCCCCACATTGAGTCTTGTG
********* ******************************** *****************
HS_haplotype1 CCTCTCTATTTATCCTGCACCAGGTGGAAGCAGGCTTCTGCAGTAGCCCTTTATTGCTCT
HS_assemblymutate_np1212 CCTCTCTATTTATCCTGCACCAGCTGGAAGCAGGCTTCTGCAGTAGCCATTTATTGCTCT
HS_haplotype2 CCTCTCTATTTATCCTGCACCAGCTGGAAGCAGGCTTCTGCAGTAGCCATTTATTGCTCT
*********************** ************************ ***********
HS_haplotype1 GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC
HS_assemblymutate_np1212 GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC
HS_haplotype2 GCCACTAGGCCGCCCTCTGTCTGAAGCGTTTTTGTGTACAAAAAAGGTCCCATCACGGAC
************************************************************
HS_haplotype1 CTCACTTTTAAGTTAGCTGCCGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC
HS_assemblymutate_np1212 CTCACTTTTAAGATAGCTGCAGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC
HS_haplotype2 CTCACTTTTAAGATAGCTGCAGGGGAATTATGTCTGTTGAAAGGGATAGAAACCTCCCAC
************ ******* ***************************************
HS_haplotype1 AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGTAAGGGGACAGGTGAAAACTCTTCCT
HS_assemblymutate_np1212 AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGTAAGGGGACAGGTGAAAACTCTTCCT
HS_haplotype2 AGATTACAGCGGGTCTGCCTGGGTTGCTTGAGTGAAAGGGGACAGGTGAAAACTCTTCCT
********************************** *************************
HS_haplotype1 AGGCTTGTATAAACCAAGGGGAGCCTACGTTTTAAACCCATTATTTAAATTTAACACAGG
HS_assemblymutate_np1212 AGGCTTGTATAAACCAAGGGGAGCCTAGGTTTTGAACCCATTATTTAAATTTAACACAGG
HS_haplotype2 AGGCTTGTATAAACCAAGGTGAGCCTAGGTTTTGAACCCATTATTTAAATTTAACACAGG
******************* ******* ***** **************************
HS_haplotype1 GGTGCGCCCAACATCTCTTTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG
HS_assemblymutate_np1212 GGTACGCCCAACATCTCTTTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG
HS_haplotype2 GGTACGCCCAACATCTCTTTGCTTTTCAAATGTATGATGCTCCCACCGTGCTGTGAGCTG
*** ********************************************************
HS_haplotype1 GAGATAATTCCTGGCCGAGTGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT
HS_assemblymutate_np1212 CCGATAATTCCTGGCCGAGCGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT
HS_haplotype2 CCGATAATTCCTGGCCGAGCGCATGATTTCTCAGGAGCTTTCCCAGCTACGTGAGTAGCT
***************** ****************************************
HS_haplotype1 TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA
HS_assemblymutate_np1212 TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA
HS_haplotype2 TGGGGAGGCTCAAGGACAGTGAGAAAGTATTCAAAGTCATGTTAGTCAGCCATCCAAGTA
************************************************************
HS_haplotype1 AACCTTCTTCTTGGTATAAATAATTCTCTTACTATGGTCTTTAATGAAAGTCCTTATAGC
HS_assemblymutate_np1212 AACCTTCTTCTTGGTATAAATAATTCTCTTACTATGGTCTTTAATGAAAGTCCTTATAGC
HS_haplotype2 AACCTTCTTCTTGGTATAAACAATTCTCTTACTATGGTCTTTAATGAAAGTCCTCATAGC
******************** ********************************* *****
HS_haplotype1 AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT
HS_assemblymutate_np1212 AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT
HS_haplotype2 AAATTTGCTCAGCATTTCAGAAGAGTGCTACTCAGTATCTCAACTAAAAAATAAAATGCT
************************************************************
HS_haplotype1 GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTTTAGATCTCAGC
HS_assemblymutate_np1212 GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTTTAGATCTCAGC
HS_haplotype2 GAGTCCAGGGGTGCCCAGTCCGGACCGGGTTGAATAGGTGAGGGGAGTCTAGATCTCAGC
************************************************ ***********
HS_haplotype1 CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACTAGAAAAGACTAGTTCCCTCCGGGT
HS_assemblymutate_np1212 CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACTAGAAAAGACTAGTTCCCTCCGGGT
HS_haplotype2 CGAGACTCTTTTAAAGGTCTCAGCCAGCCAGACACCAGAAAAGACTAGTTCCCTCCGGGT
*********************************** ************************
HS_haplotype1 GGTTGATGAAACCCACTGGATGCTTCTAACTAACTTGAAAGACGGCACATTAAAGGGTCT
HS_assemblymutate_np1212 GGTTGATGAAACCCACTGGATGCTTCTAACTAACTTGAAAGACGGCACATTAAAGGGTCT
HS_haplotype2 GGTTGATGAAACCCACTCGATGCTTCTAACTAACTTGAAAGACAGCACATTAAAGGGTCT
***************** ************************* ****************
HS_haplotype1 GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT
HS_assemblymutate_np1212 GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT
HS_haplotype2 GCAGTGGCCCATGGGAGGACACTGCTCTACAGCCCAGAGCGATTCTCACGATTGTTTGAT
************************************************************
HS_haplotype1 ATTTTAGCCTGTGGGTAGAGACAGTAACAAAAGACTTTATTTACTCATTTTCAATCGCTC
HS_assemblymutate_np1212 ATTTTAGCCTGTGGGTAGAGACAGTAACAAAAGACTTTATTTACTCATTTTCAATCGCTC
HS_haplotype2 ATTTTAGCCTGTGGGTAGAGACAGTAAGAAAAGACTTTATTTACTCATTTTCAATCGCTC
*************************** ********************************
HS_haplotype1 TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG
HS_assemblymutate_np1212 TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG
HS_haplotype2 TCCACTGCCCACATGGGGAATCATCAGGAGCAGTGAGATCATACCCAGCCTGTAGAAAGG
************************************************************
HS_haplotype1 TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT
HS_assemblymutate_np1212 TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT
HS_haplotype2 TAGCAAAGAATGACTTGGCCAATGGAGCTCTCCGCGAGCCACCCCTCTTAAATGATTCAT
************************************************************
HS_haplotype1 GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCCCAGACCTACTTAAGCTTAA
HS_assemblymutate_np1212 GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCGCAGAACTACTTAAGCTTAA
HS_haplotype2 GATCAAGCAGAGGCGGACGGGGCGATCTGCTAAGCAGGTCGCAGAACTACTTAAGCTTAA
**************************************** **** **************
HS_haplotype1 TGTATCTGCATCATGCGGGTCTGGGTGTGGACGCCCCAGTTAACGAAGTGTAAAAAAGAT
HS_assemblymutate_np1212 TGTATCTGCATCATGCGGGTCTGGGTGTGGACGCCCCAGTTAACGAAGTGTAAAAAAGAT
HS_haplotype2 TGTATCTGCATCATGCGGGTCTGGGTGTGGACGCCCCAGTTAACGAAGTGTAGAAAAGAT
**************************************************** *******
HS_haplotype1 GGAAGAAGGCTCACTTATGGATATTTGGTTCCCAAACAAGCATTTCCTCTAACAGTGGAC
HS_assemblymutate_np1212 GGAAGAAGGCTCACTTATGGATATTTGGTTCCCAAACAAGCATCTCCTCTAACAGTGGAC
HS_haplotype2 GGAAGAAGGCTCACTTATGGATATTTGGTTCCCAAACAAGCATCTCCTCTAACAGTGGAC
******************************************* ****************
HS_haplotype1 TAATAAAACAAAAGGGCACGAAAGAAATTCTGCCCTCTTGCAGTAAGGCTGATGAGTGGG
HS_assemblymutate_np1212 TAATAAAACAAAAGGGCACGAAAGAAATTCTGCCCTCTTGCAGTAAGGCTGATGAGTGGG
HS_haplotype2 TAATAAAACAAAAGGGCACGAAAGAAATTCTGCCCTCTTGCAGTAAGGCTGATGAGTGGG
************************************************************
HS_haplotype1 ATTACATCACCACAACTTGAATATGTGTGGCTTTTTTGGTATATAGTCTTAAATCTTAGG
HS_assemblymutate_np1212 ATTACATCACCACAACTTGAATAAGTGTGGCTTTTTTGGTATATAGTCTTAAATCTTAGG
HS_haplotype2 ATTACATCACCACAACTTGAATAAGTGTGGCTTTTTTGGTATATAGTCTTAAATCTTAGG
*********************** ************************************
HS_haplotype1 ACTCTGTCCACTAAAGCTTTAAAGGAAAATGTAGGGCATATCTGCAGCGGCTTTTGTTCC
HS_assemblymutate_np1212 ACTCTGTCCACTAAAGCTTTAAAGGAAAATGTAGGGCATATCTGCAGCGGCTTTTGTTCC
HS_haplotype2 ACTCTGTCCACTAAAGCTTTAAAGGAAAATTTAGGGCATCTCTGCAGAGGCTTTTGTTCC
****************************** ******** ******* ************
HS_haplotype1 TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT
HS_assemblymutate_np1212 TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT
HS_haplotype2 TTTAAAAAATCGCTGCAATTCATGTGATCAGACCAGGGGCTAATAGGAGGCTGATATGTT
************************************************************
HS_haplotype1 GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCCGGAGGCACCAT
HS_assemblymutate_np1212 GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCCGGAGGCACCAT
HS_haplotype2 GGGTGAAAGAAAAGCTGCAAGGCTCAAACAACTCTAAAGGAGGAAACCTGGAGGCACCAG
************************************************ **********
HS_haplotype1 GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATATACCGCAGTCATGCCCTTCCTTT
HS_assemblymutate_np1212 GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATATACCGCAGTCATGCCCTTCCTTT
HS_haplotype2 GGCACTAAATATGCTTCCTCTGTTTTTTTTACACATAAACCTCAGACATGCCCTTCCTTT
************************************* *** *** **************
HS_haplotype1 TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT
HS_assemblymutate_np1212 TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT
HS_haplotype2 TCCTTGCCACCCCCGCCAGAGGACAGGGGTTATCCAGGCATGACAGGGGCGTTTACCATT
************************************************************
HS_haplotype1 TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCTCC
HS_assemblymutate_np1212 TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCTCC
HS_haplotype2 TTGGGTGGAACTATTAATGTGAGTTCCAGCCCTACCTAATGCAAAATGCCCCAGACCTCC
************************************************************
HS_haplotype1 CAGAGAGGTTTAAATGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT
HS_assemblymutate_np1212 CAGAGAGGTTTAAAAGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT
HS_haplotype2 CAGAGAGGTTTAAAAGAAACTAGCATGGAACATTGCTCAGCCTGTTATATCGTACCATCT
************** *********************************************
HS_haplotype1 CTGTTTTGTTTATCTGAAGCTGGTTATTCTTTAGTATTGTATATTGGGCATTGTTCCATC
HS_assemblymutate_np1212 CTGTTTTGTTTATCTGAAGCCGGTTATTCTTTAGTATTGTATTTTGGGCATTGTTCCATC
HS_haplotype2 CTGTTTTGTTTATCTGAAGCCGGTTATTCTTTAGTATTGTATTTTGGGCATTGTTCCATC
******************** ********************* *****************
HS_haplotype1 TTTTGTTAGGGCACCGCACTCAGATATGTGCTAATGGGAATCATCAGGTGTCCTCTCCAC
HS_assemblymutate_np1212 TTTTGTTAGGGCACTGCACTCAGATCTGTGCTAATGGGAATAATCAGGTGTCCTCTCCAC
HS_haplotype2 TTTTGTTAGGGCACTGCACTCAGATCTGTGCTAATGGGAATAATCAGGTGTCCTCTCCAC
************** ********** *************** ******************
HS_haplotype1 ACCCGGAAGCCCTGCTAATAGCAGAGTTCGGAATAATAAATCCTGAGAAATATGAACCAC
HS_assemblymutate_np1212 ACCCGGAAGCCCTGCTAATAGCAGAGTTCGGAATAATAAATCCTGAGAAATATGAACCAC
HS_haplotype2 ACCCGGAAGCCCTGCTAATAGCAGAGTTCGGAATAATAAATCCTGAGAAATATGAACCAC
************************************************************
HS_haplotype1 ATCAGAGGAACCCCCCTCCTCTCGTACATTTGTAGCAACAATATGAAGGATGGCGAAATC
HS_assemblymutate_np1212 ATCAGAGGAACCCCCCTCCTCTCGTACATTTGTAGCAACAATATGAAGGATGGCGAAATC
HS_haplotype2 ATCAGAGGAACCCCCCTCCTCTCGTACATTTGTAGTAACAATATGAAGGATGGCGAAATC
*********************************** ************************
HS_haplotype1 CCAGGTCACATAACCCTGGGGCCTAAAAAAACCCTGGATTTACTTTTCATCATTAAAAAC
HS_assemblymutate_np1212 CCAGGTCACATAACCCTGGGGCCTAAAAAAACCCTGGATTTACTTTTCATCATTAAAAAC
HS_haplotype2 CCAGGTTACATAACCCTGGGGCCTAAAAAAACCCCGGATTTACTTTTCATCATTAAAAAC
****** *************************** *************************
HS_haplotype1 AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTCGATGGCATACTGGGA
HS_assemblymutate_np1212 AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTCGATGGCATACTGGGA
HS_haplotype2 AAGCCCTCCACACACATTTATAGGGCAAACATGCTTTTTTTAGTAGATGGCATACTGGGA
******************************************** ***************
HS_haplotype1 ACCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTGGCCAC
HS_assemblymutate_np1212 ACCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTAGCCAC
HS_haplotype2 AGCATTTATTCTGTCAACTGATTTTATATGGGGTGCTGAGTGTCCCAAGCTCTTAGCCAC
* **************************************************** *****
HS_haplotype1 TGTGCTAGAACACACCCCTCATCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT
HS_assemblymutate_np1212 TGTGCTAGAACACACCCCTCATCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT
HS_haplotype2 TGTGCTAGAAGACACCCCTCCTCGTCTTGGGGTTAGGACATATGTACAAGGTGTTGAACT
********** ********* ***************************************
HS_haplotype1 AGGAGCTTTTCTTACTTGTTTCCGACCAGCGCATTGCTTTATCTTGTGTTCAGGCTGCTT
HS_assemblymutate_np1212 AGGAGCTTTTCTTACTTGTTTTCGACCAGCGCATTGCTTTATCTTGTGTTCAGGCTGCTT
HS_haplotype2 AGGAGCTTTTCTTACTTGTTTTCGACCAGCGCATTGCTTTCTCTTGTGTTCAGGCTGCTT
********************* ****************** *******************
HS_haplotype1 CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGTGGGACAAAAATCAGGCCGCGCCC
HS_assemblymutate_np1212 CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGCGGGACAAAAATCAGGCCGCGCCC
HS_haplotype2 CTATATTTTACTCGCTTGTTCGAAGACTAAACCTCGCGGGACAAAAATCAGGCCGCGCCC
************************************ ***********************
HS_haplotype1 GACCTCCGGTCTCTCGTTTTTAATTCTAAGGGATTATATACTCAGAGGAATGCACTGCAA
HS_assemblymutate_np1212 GACCTCCGGTCTCTCATTTTTAATTCTAAGGGCTTATATACTCAGAGGAATGCACTGCAA
HS_haplotype2 GACCTCCGGTCTCTCATTTTTAATTCTAAGGGCTTATATACTCAGAGGAATGCACTGCAA
*************** **************** ***************************
HS_haplotype1 GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCCCCCGTTCACCACTTTTGATG
HS_assemblymutate_np1212 GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCCCCCGTTCACCACTTTTGATG
HS_haplotype2 GAGGCAGAGGGAGGAAGTGCCACAGTCTTGAGAATCTGCACCCGTTCACCACTTTTGATG
*************************************** ********************
HS_haplotype1 TAACCTGTCCCCAGAGCAGAGAAGATCATCCGCTCTTCGCCTCATCTTTGGATTTGTGAA
HS_assemblymutate_np1212 TAACCTGTCCCCAGAGCAGAGAAGATCATCCGCTCTTCGCCTCATCTTTGGATTTGTGAA
HS_haplotype2 TAACCTGTCCCCAGAGCAGAGCAGATCATCAGCTCTTCGCCTCATCTTTGGATTTGTGAA
********************* ******** *****************************
HS_haplotype1 ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACCTA
HS_assemblymutate_np1212 ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACATA
HS_haplotype2 ACCAGTTCTGGGATTAGGAAAACTCAGCTGGAATCTTTGGTTTACAGCCCTCCCCACATA
********************************************************* **
HS_haplotype1 GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA
HS_assemblymutate_np1212 GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA
HS_haplotype2 GGTGTACATACTACAACTGACTTATCTGGGTTCGAGTTATAAATGGGACAAAATTACGAA
************************************************************
HS_haplotype1 AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGAGCAACCTCTGATAACCTCTCCC
HS_assemblymutate_np1212 AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGAGCAACCTCTGATAACCTCTCCC
HS_haplotype2 AGAAAAAGTTAAAACCATTGATTACACAGGGAAACAGTGCAACCTCTGATAACCTCTCCC
************************************* **********************
HS_haplotype1 CCACTTATCAGTTCAACCTGTAAGAAGGATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA
HS_assemblymutate_np1212 CCACTTTTCAGTTCAACCTGTAAGAAGAATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA
HS_haplotype2 CCACTTTTCAGTTCAACCTGTAAGAAGAATGGGGCGGATTCAGCCTTGGCGCAGTTTTCA
****** ******************** ********************************
HS_haplotype1 GGAAGGCCTCTATGGGAAGGGTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAACCTCC
HS_assemblymutate_np1212 GGAAGGCCTCTATGGGAAGGGTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAATCTCC
HS_haplotype2 GGAAGGCCTCTATGGGAAGGGTTAGGGGTTCTGTTGTAAAAATGGAAATTTAGAATCTCC
******************************************************* ****
HS_haplotype1 TAACAGACTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGAGGCTGC
HS_assemblymutate_np1212 GAACAGTCTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGAGGCTGC
HS_haplotype2 GAACAGTCTCACTTCCCTTCTAGAAATCCAATATATTCTAGTGTTTCTCCTGGATGCTGC
***** *********************************************** *****
HS_haplotype1 CCAGGAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATAC
HS_assemblymutate_np1212 CCAGGAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATAC
HS_haplotype2 CCAGTAGCTAAAAGCCTAAAGAATCCCAAGAAGAGCATAATCCTGGTAGTATTTACATAC
**** *******************************************************
HS_haplotype1 AGGTCAGCCAACCTCGTCAAGGCATAGGAGGAGTATATACAAAAGACAAATCACCATTGA
HS_assemblymutate_np1212 AGGTCAGCCAACCTCGTCAAGGCATAGGAGGAGTATATACAAAAGACAAATCACCATTGA
HS_haplotype2 AGGTCAGCCAACCTCGTCAAGGCATAGGAGGAGTATATACAAAAGACAAATGACCATTGA
*************************************************** ********
HS_haplotype1 ATTTTCTGCCCAGGGGAATTTGAGATATTATAGTTTTCTTGAAACATATCGCGGGGCTGG
HS_assemblymutate_np1212 ATTTTCTGCCCAGGGGAATTTGAGATATTATAGTTTTCTTGAAACATATCGCGGGGCTGG
HS_haplotype2 ATTTTCTGCCCAGGGGAATTAGAGATATTATAGTTTTCTTGAAAAATATCGCGGGGCTGG
******************** *********************** ***************
HS_haplotype1 GATTTTAAACATGACAATGGCTGGTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT
HS_assemblymutate_np1212 GATTTTAAACATGACAATGGCTGGTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT
HS_haplotype2 GATTTTAAACATGACAATGGCTGTTCCCTGGGCTTCACCATATGCTCTGAATCTTATGGT
*********************** ************************************
HS_haplotype1 CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA
HS_assemblymutate_np1212 CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA
HS_haplotype2 CTTGGTGCCTGGGCTATAATTTTGACAGGAAGCTATAAACGAAGCCAGGGCACGGCAAAA
************************************************************
HS_haplotype1 TACTTTTGACTACATAAAAGTTATTCAGGAACAGGCCTTCCCCAAAGTCTGCTCCCATTG
HS_assemblymutate_np1212 TACTTTTGACTACATAAAAGTTATTCAGGAACAGGCCTTCCCCAAAGTCTGCTCCCATTG
HS_haplotype2 TACTTTTGACTACATAAAAGTTATTCAGGAACAGGCCTTCCCCAAAGTCTGCTCCCATTG
************************************************************
HS_haplotype1 ACCCTGTTATTGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGCTGGA
HS_assemblymutate_np1212 ACCCTGTTATTGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGATGGA
HS_haplotype2 ACCCTGTTATTGGCCTCAGCTCCTCATGAGCAGCTTCTACACTAGAAAGTCCTGGATGGA
******************************************************* ****
HS_haplotype1 ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA
HS_assemblymutate_np1212 ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA
HS_haplotype2 ACGTTGGTTTTTCCACCGTGCTTATATGACGAGAGTGGCATGGTTGTTCTCCCCTCAGAA
************************************************************
HS_haplotype1 ATCTCACTGAAACCTGGCATGAATATATATATGGAATAGAGATATAGCCATGTTGGTGAT
HS_assemblymutate_np1212 ATTTCACTGAAACCTGGCATGAATATATATATGGAATAGAGATATAGCCATGTTGGTGAT
HS_haplotype2 ATTTCACTGAAACCTGGCATGAATATATATATGGAATAGAGATATAGCCATGTTGGTGAT
** *********************************************************
HS_haplotype1 TCAAAATTAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATCGTGGGCGGAAGTAGCT
HS_assemblymutate_np1212 TCAAAATTAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATGGTGGGCGGAAGTAGCT
HS_haplotype2 TCAAAAATAAGGACCAGGAAGACGCCTGGGAAGCTGGAAGAATGGTGGGCGGAAGTAGCT
****** ************************************ ****************
HS_haplotype1 GGATATGATCAGAGAACTGCAACCTTTGAATCAAAATAAACAGTTTTAGTCTGGCTCTCT
HS_assemblymutate_np1212 GGATATGATCAGAGAACTGTAACCTTTGAATCAAAATAAACAGTTTTAGTCTGGCTCTCT
HS_haplotype2 GGATATGATCAGAGAACTGTAACCTTTGAATCAAAATAAACAGTTTTAGTCTGGCTCTCT
******************* ****************************************
HS_haplotype1 AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGGG
HS_assemblymutate_np1212 AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGTG
HS_haplotype2 AGCCTGGGATTCCACAGATCACAGCATTCAGTTATGATGGCTACATAACAAAAAGAAGTG
********************************************************** *
HS_haplotype1 TTCCTATCAGGCCACAGGTATATCTCTGCGCCACCAAAACTTCCAGGGTGTGAGCCGCCG
HS_assemblymutate_np1212 CTCCTATCAGGCCACAGATATATCTCTGCGCCACCAAAACTTCTAGGGTGTGAGCCGCCG
HS_haplotype2 CTCCTATCAGGCCACAGATATATCTCTGCGCCACCAAAACTTCTAGGGTGTGAGCCGCCG
**************** ************************* ****************
HS_haplotype1 CGGGCCCCCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG
HS_assemblymutate_np1212 CGGGCCACCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG
HS_haplotype2 CGGGCCACCAGAAGTCTGGAGAAAAATCCATCATCTTTATTTCTCACTGCTGCTAGTCGG
****** *****************************************************
HS_haplotype1 GATTTCAGGAGCGCCCTGGCTCCATTTAAATTAGATGCTTTGGTGGTGTCTCTTGATGTT
HS_assemblymutate_np1212 GATTTCAGGAGCGCCCTGGCTCCATTTAAATTAGATGCTTTGGTGGTGTCTCTTGATGTT
HS_haplotype2 GGTTTCAGGAGCGCCCTGGCTCCACTTTAATTAGATGCTTTGGTGGTGTCTCTTGATGTT
* ********************** ** ********************************
HS_haplotype1 TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTGCAGTGAAACTTTGAACTCATTT
HS_assemblymutate_np1212 TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTGCAGTGAAACTTTGAACTCATTT
HS_haplotype2 TCATTAAAGAGGATCAGCCTGTTTGCTTCCAGCAGGTACAGTGAAACTTTGAACTCATTT
************************************* **********************
HS_haplotype1 TACCGCTGGACACTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC
HS_assemblymutate_np1212 TACCGCTGGACACTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC
HS_haplotype2 TACCGCTGGACACTTAACACTAGGCCGCACGTCAGAGGAAATGATCCAACCCGGTAGGTC
************************************************************
HS_haplotype1 ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA
HS_assemblymutate_np1212 ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA
HS_haplotype2 ATGCTTGCATTATATCACAAAAGCTCCTCAAAATAACCAAAGGAGAGACAGTCATGTTCA
************************************************************
HS_haplotype1 CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC
HS_assemblymutate_np1212 CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC
HS_haplotype2 CCCAGGAGTTAAATGCCTGATGACTTTGGCCTTTTTCTTATGGTGGAACACGTTTCAAGC
************************************************************
HS_haplotype1 AATGCCCACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA
HS_assemblymutate_np1212 AATGCCCACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA
HS_haplotype2 AATGCACACTGCTCTGTACCAGGCTCCAGGGATTTTTAAATACCCCACAGAATCTATCAA
***** ******************************************************
HS_haplotype1 TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACTCGGC
HS_assemblymutate_np1212 TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACGCGGC
HS_haplotype2 TACTAGAACAGAGTAGGGGAAACACATCAGAAATTTCTCATCCTTTATGTGAAACGCGGC
******************************************************* ****
HS_haplotype1 TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTGCTAAACCAGCTACTCACTTCAATCTG
HS_assemblymutate_np1212 TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTGCTAAACCAGCTACTCACTTCAATCTG
HS_haplotype2 TTGAATTTGTGGTGATGTCTGATCTGGTGTGTTCCTAAACCAGCTACTCACTTCAATCTG
********************************* **************************
HS_haplotype1 TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGTCTGTGTGTCCCTCCTGTGGGGTCTC
HS_assemblymutate_np1212 TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGACTGCGTGTCCCTCCTGTGGGGTCTC
HS_haplotype2 TTATTTTGAAACATAAGATGAGCTGGGTTTTAAGACTGCGTGTCCCTCCTGTGGGGTCTC
********************************** *** *********************
HS_haplotype1 TCTGCAGGAATGAAGTTACCCTCCTTCCTTCTTAGGTTGAACATAAAAAATGCCACCTGG
HS_assemblymutate_np1212 TCTGCAGGAATGAAGTTACCCTCCTTACTTCTTAGGTTGAACATAAAAAATGCCACCTGG
HS_haplotype2 TCTGCAGGAATGAAGTTACCCTCCTTACTTCTTAGGTTGAACATAAAAAATGCCACCTGG
************************** *********************************
HS_haplotype1 GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTACAAAATGAGATTCCAGCATTTTTAATA
HS_assemblymutate_np1212 GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTATAAAATGAAATTCCAGGATTTTGAATA
HS_haplotype2 GAGGCGTGAGCGTGGATTAGCCACGTCCTCCTATAAAATGAAATTCCAGGATTTTGAATA
********************************* ******* ******* ***** ****
HS_haplotype1 ATATGAGGCTGGGGCCTAGGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA
HS_assemblymutate_np1212 ATATGAGGCTGGGGCCTACGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA
HS_haplotype2 ATATGAGGCTGGGGCCTACGCGCGGTAAGGCTATCCTTAATTTCGATGACCCCAGCAAAA
****************** *****************************************
HS_haplotype1 GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGCACACCAGCTGTGCTGTTTTTGTT
HS_assemblymutate_np1212 GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGGACACCAGCTGTGCTGTTTTTGTT
HS_haplotype2 GGTGCCTAGATATCTCCCAGGTCAGCCTGACAGCTGGACACCAGCTGTGCTGTTTTTGTT
************************************ ***********************
HS_haplotype1 GTTTGTACCTTGAAAGCACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGCTGTTTG
HS_assemblymutate_np1212 GTTTGTACCTTGAAAGCACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGATGTTTG
HS_haplotype2 GTTTGTACCTTGAAAGCACTTGCAGAAAGACAGAATATAGGGGGATGGCTAGGATGTTTG
***************************************************** ******
HS_haplotype1 TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG
HS_assemblymutate_np1212 TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG
HS_haplotype2 TCACACACTAGTGCATGCCTGGCCTAAAAATGCCTGATTCTCCCGGGCATCTGAAAGCAG
************************************************************
HS_haplotype1 TTTTTTGTACCCCTTACTACTCTCGGCGAGGTAGCACTGCTCCTGTCCTGTAAACATTTT
HS_assemblymutate_np1212 TTTTTTGTACCCCTTACTACTCTCGGCGAGGTAGCACTGCTCCTGTCCTGTAAACATTTT
HS_haplotype2 TTTTTTGTACCCCTTACTACTCTCGGCGAGCTAGCACTGCTCTTGTCCTGTAAACATTTT
****************************** *********** *****************
HS_haplotype1 AAGTAAGGCATGGGGGAGGATGGGAGCAGAAGCCCACATAAGGCGCGCGCCTTACCTTCA
HS_assemblymutate_np1212 AAGTAAGGCATGGGGGAGGATGGGAGCAGAAGCCCACATAAGGCGCGCGCCTTACCTTCA
HS_haplotype2 AAGTAAGGCATGGGGGAGGATGGGAGCAGTAGCCCACATAAGGCGCGCGCCTTACCTTCA
***************************** ******************************
HS_haplotype1 ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT
HS_assemblymutate_np1212 ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT
HS_haplotype2 ATCCCAGGCCAGAGACAAGAGGATGTGTGTTAAGTCACTTTTTATTTTATTCATTGGTGT
************************************************************
HS_haplotype1 CAACAGCAGATTCTTCCTATGTGGGGAGTGGCGTGAGAGAAATATGGGATTATAGGCTCA
HS_assemblymutate_np1212 CAACAGCAGATTCTTCCTATGTGGGGAGTGGCGTGAGAGAAATATGGGATTATAGGCTCA
HS_haplotype2 CAACAGCAGATTCTTCCTATGTGGGGCGTGGCGTGAGAGAAATATGGGATGATAGGCTCA
************************** *********************** *********
HS_haplotype1 CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG
HS_assemblymutate_np1212 CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG
HS_haplotype2 CCCTGTAGTCCAAAGTTTCATTAATCCTTTACTAGTAGCTACTGCCTTCTTCAGAGCTGG
************************************************************
HS_haplotype1 TGAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT
HS_assemblymutate_np1212 TCAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT
HS_haplotype2 TCAAGTGAGTAGGAGCTAATAACTCCACATATTTTTTAATTTTCTCAGAAGTTGAAATCT
* **********************************************************
HS_haplotype1 CAAGTCCGTGACCCTCTCCATAAGAAAAAGTGGCAGACTAGGTGCATAGATATATTGGAA
HS_assemblymutate_np1212 CAAGTCCGTGACCCTCTCCATAAGAAAAAGTGGCAGACTAGGTGCATAGATATATTGGAA
HS_haplotype2 CAAGTCCGTGACCCTCTCCATAAGAAAAAGTGGCAGACTAGGTGCATAGATATATTGGAA
************************************************************
HS_haplotype1 AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT
HS_assemblymutate_np1212 AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT
HS_haplotype2 AAATAAATGAGACAGATGAGCCAAAATGATGTGTCCATCAGTGTTCTGTTAAGAAACCTT
************************************************************
HS_haplotype1 CCTTACCAAGCTAAAAACTGGTGATGATCACAATGACCCTATGGTGGGGTTTACAGGTAT
HS_assemblymutate_np1212 CCTTACCAAGCGAAAAACTCGTGATGATCACAATGGCCCTATGGTGGGGTTTACAGGTAT
HS_haplotype2 CCTTACCAAGCGAAAAACTCGTGATGATCACAATGGCCCTATGGTGGGGTTTACAGGTAT
*********** ******* *************** ************************
HS_haplotype1 GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG
HS_assemblymutate_np1212 GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG
HS_haplotype2 GAGACCAAAATTCACCAGACCAGGGGAAGAATCTTGGGACAAATTTCCCAGCTCTAGCTG
************************************************************
HS_haplotype1 GTAAATGCTGGTTCCAACTGATCGAGATATAAAGAATAGGTTCTGTTTCATTTCATACAA
HS_assemblymutate_np1212 GTAAATGCTGGTTCCAACTGATCGAGATATAAAGAATAGGTTCTGTTTCATTTCATACAA
HS_haplotype2 GTAAATGCTGGTTCCAACTGATCGAGATATATAGAATAGGTTCTGTTTCATTTCATACAA
******************************* ****************************
HS_haplotype1 AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC
HS_assemblymutate_np1212 AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC
HS_haplotype2 AAAAGTTGATGACAATCCTTTTTTGTATACTTTCCTTCTTTGAATTAGAAGCTGACCCTC
************************************************************
HS_haplotype1 AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGACTGTATTGAAAGAGATTTT
HS_assemblymutate_np1212 AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGATTGTATTGAAAGAGATTTT
HS_haplotype2 AAGTAATATCACCGTATATTCTTTTTCTAAATTGAGTTTGATTGTATTGAAAGAGATTTT
***************************************** ******************
HS_haplotype1 ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGAGATGGGATCATTAGGAGTTATAGCCAG
HS_assemblymutate_np1212 ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGAGATGGGATCATTAGGAGTTATAGCCAG
HS_haplotype2 ACAGACTCAGCTAAGAAGCTCAAGTGGGAATGAGATGGGATCATTAGGAGTTATAGCCAG
************************************************************
HS_haplotype1 TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG
HS_assemblymutate_np1212 TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG
HS_haplotype2 TTGAGCGATGGTGTTAGGCAGTCAGGGAGGATGGGGTGCTGGGCAGGAATGGCAATATTG
************************************************************
HS_haplotype1 TTGATGACAAGTTATGAAACAAAGTTTGGGAAAGGATGGAGGCAAACAGTCTAATGGTCT
HS_assemblymutate_np1212 TTGATGACAAGTTATGAAACAAAGTTTGGGAAAGGATGGAGGCAAATAGTCTAATGGTCT
HS_haplotype2 TTGATGACAAGTTATGAAACAAAGTTTGGGAAAGGATGGAGGCAAATAGTCTAATGGTCT
********************************************** *************
HS_haplotype1 CAGCCTGCATGAGCTTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG
HS_assemblymutate_np1212 CATCCTGCATGAGCTTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG
HS_haplotype2 CATCCTGCATGAGCTTTCTCAGCTGACGAATTCCGATCTGGCTTGGTTTTAAACAGGCTG
** *********************************************************
HS_haplotype1 AGCAGGTGCCAGCCTCCGCGTCGTACTGAAACCTTTTTATCTAACTGTGTACTGTGGGGA
HS_assemblymutate_np1212 AGCAGGTGCCAGCCTCCGCGGCGTACGGAAACCTTTTTATCTAACTGTGTACTGTGGGGA
HS_haplotype2 AGCAGGTGCCAGCCTCCGCGGCGTACGGAAACCTTTTTATCTAACTGTGTACTGTGGGGA
******************** ***** *********************************
HS_haplotype1 CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACCCAATAT
HS_assemblymutate_np1212 CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACTCAATAT
HS_haplotype2 CCCTGGGAGGGTTTTGACCTTGAGGCAAATCAGCCTCTCCCAGCCCACTGCACTCAATAT
***************************************************** ******
HS_haplotype1 GACTGAGATCGTTGAAGCAAAACATGACGAATAAATAGTTGGGAGCTCGTCTTTCCTGAA
HS_assemblymutate_np1212 GACTGAGATCGTTGAAGCAAAACATGACGAATAACTAGTTGGGAGCTCCTCTTTCCTGAA
HS_haplotype2 GACTGAGATCGTTGAAGCAAAACATGACGAATAACTAGTTGGGAGCTCCTCTTTCCTGAA
********************************** ************* ***********
HS_haplotype1 TATAGCATTCTCTTTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG
HS_assemblymutate_np1212 TATAGCATTCTCTGTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG
HS_haplotype2 TATAGCATTCTCTGTGTTTATTAGATACCATATTAGCAGGAGAAGGGCCCCGTCCAGCTG
************* **********************************************
HS_haplotype1 AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC
HS_assemblymutate_np1212 AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC
HS_haplotype2 AGGAGGTGCCAATTACATTGCCAAAAGACAGGTGTGGTTGCCCAATTCTAAAAGCCCGTC
************************************************************
HS_haplotype1 CTTCTCTACTCCTGGTATATGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC
HS_assemblymutate_np1212 CTTCTCTACTCCTGGTATATGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC
HS_haplotype2 CTTCTCTACTCCTGGTATATGCTTTAGGCTGCTCTGGGTATACACACACTGTGGAAGCTC
************************************************************
HS_haplotype1 AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCGTGGTTG
HS_assemblymutate_np1212 AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCATGGTTG
HS_haplotype2 AGCCTTCCCAGAACTCCCAGCCCCTGAACGTGTCTCCACACAAGACCTTAACCATGGTTG
***************************************************** ******
HS_haplotype1 CTATCTCTGTTCTGTGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG
HS_assemblymutate_np1212 CTATCTCTGTTCTGGGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG
HS_haplotype2 CTATCTCTGTTCTGGGGAATCCCTTCGTTAAACTGCAACACTTTGCCCGGGTCTGAGAGG
************** *********************************************
HS_haplotype1 CTGGCAATTCAGACTCTCTATAGTCCTAATCATGACCTGGCCGGGCCCGTCCACCTCAAG
HS_assemblymutate_np1212 CTGGCAATTCAGACTCTCTATAGTCCTAATCATGACCTGGCCGGGCCCGTCCACCTCAAG
HS_haplotype2 CTGGCAATTCAGACTCTCTATAGTCCTAATCATGACCTGGCCGGGCCCGTCCACCTCAAG
************************************************************
HS_haplotype1 TTAATTGCCCGCACGGGTGGTCAAGCATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC
HS_assemblymutate_np1212 TTAATTGCCCGCACGGGTGGTCAAGTATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC
HS_haplotype2 TTAATTGCCCGCACGGGTGGTCAAGTATTGAAATTTATGTCTCTTCTTAAACTCCCTGAC
************************* **********************************
HS_haplotype1 AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGAAAGATTGTCCACCCACTGC
HS_assemblymutate_np1212 AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGCAAGATTGTCCACCCACTGC
HS_haplotype2 AATAAACATGGTGTGGAAGCTCTAGGGAGGCAGGAGTTGGCAAGATTGTCCACCCACTGC
**************************************** *******************
HS_haplotype1 ACTTGTAAGTTAGAGGGACAAGAAGGTAATCTTGATCTTCTGTTTCAAACAGGGAACTAG
HS_assemblymutate_np1212 ACTTGTAAGTTAGAGGGACAACAAGGTAATCTTGATCTTCTGTCTCAAACAGGGAACTAG
HS_haplotype2 ACTTGTAAGTTAGAGGGACAACAAGGTAATCTTGATCTTCTGTCTCAAACAGGGAACTAG
********************* ********************* ****************
HS_haplotype1 AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGAATTTAGTAACCCAGCCGA
HS_assemblymutate_np1212 AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGATGTTAGTAACCCAGCCGA
HS_haplotype2 AACAAAAACTAAATGTCATTAGAGAAATAACAAGATGCTGGATGTTAGTAACCCAGCCCA
****************************************** ************** *
HS_haplotype1 CTGCACTACAAAACTAGATTTAATCAAGATTAGGGCATTGAGCCAGGATTCACTGGGCAT
HS_assemblymutate_np1212 CTGCACTACAAAACTAGATTTAATCAAGATTAGGGCATTGAGCCAGGATTCACTGGGCAT
HS_haplotype2 CTGCACTACAAAACTAGATTTAATCAAGATTAGTGCATTGAGCCAGGATTCACTGGGCAT
********************************* **************************
HS_haplotype1 GTTTTTTCCTCCCTTAAGCTGAGGTCTTTCTCAGAAATTGTAGATGTTAATAATTCCACC
HS_assemblymutate_np1212 GTTTTTTCCTCCCTTAAGCTGAGGTCTTTCTCAGAAATTGTAGATGTTAATAATTCCACC
HS_haplotype2 GTTTTTTCCTCCCTTAAGCTGAGGTCCTTCTCAGAAATTGTAGATGTTTATAATTCCACC
************************** ********************* ***********
HS_haplotype1 TATTGAAATCCCAGCGGCCGAGGGAGACCACCTAGAATCCTGACCAAGTTTATAGAAAGG
HS_assemblymutate_np1212 TATTGAAATCCCAGCGGCCGAGGGAGACCACCTAGAATCCTGACCTAGCTTATAGAAAGG
HS_haplotype2 TATTGAAATCCCAGCGGCAGAGGGAGACCACCTAGAATCCTGACCTAGCTTATAGAAAGG
****************** ************************** ** ***********
HS_haplotype1 CTCATGCAGGAAAAGTATTCGCAGGGACGTTGGAGTTCAGAGGATGTGTTAGCTGAAAAC
HS_assemblymutate_np1212 CTCATGCCGGAAAAGTATTCGCAGGGACGTTGGAGTTCAGAGGATGTGTTTGCTGAAAAC
HS_haplotype2 CTCATGCCGGAAAAGTATTCGCAGGGACGTTGGAGTTCAGAGGATGTGTTTGCTGAAAAC
******* ****************************************** *********
HS_haplotype1 ATTTATAGTGCTAATGCCCCTTAACCGGCCTTTCTGTGAAAAAATGCCACACAAGTTTTG
HS_assemblymutate_np1212 ATTTATAGTGCTAATGCCCCTTAACCGGCCTTTCTGTGAAAACATGCCACACAAGCTTTG
HS_haplotype2 ATTTATAGTGCTAATGCCCCTTAACCGGCCTTTCTGTGAAAACATGCCACACAAGCTTTG
****************************************** ************ ****
HS_haplotype1 GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT
HS_assemblymutate_np1212 GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT
HS_haplotype2 GAGTGGAGAAGAGGTGTGCTGGGTTTCGCTCTGGAATGGGGTTCATTTTTCCATGTGGCT
************************************************************
HS_haplotype1 TTTGTAGATGGGTATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT
HS_assemblymutate_np1212 TTTGTAGATGGGGATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT
HS_haplotype2 TTTGTAGATGGGGATGTTAACTTATTATGTTATGGTCAGGTGCTGATGCAGCCTGGAGCT
************ ***********************************************
HS_haplotype1 CCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT
HS_assemblymutate_np1212 CCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT
HS_haplotype2 GCTGTTTTCAGAACACTATCCTTTTTGTTTATTTGATAGGGATAAGCAGACGGGGGTAAT
***********************************************************
HS_haplotype1 TGCTCCTGCCTCAGGCATTCCAGCAGTCTTTGTTTAACTGTTCCAAAAGGATTTGTCTCA
HS_assemblymutate_np1212 TGCTCCTGCCTCAGGCATTCCAGCAGTCTTTGTTTAACTGTTCCAAAAGGATTTGTCTCA
HS_haplotype2 TGCTCCTGCCTCAGGCATTCCAGCAGTCTCTGTTTAACTGTTCCAAAAGGATTTGTCTCA
***************************** ******************************
HS_haplotype1 AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATCTTGCCTGTAT
HS_assemblymutate_np1212 AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATCTTGCCTGTAT
HS_haplotype2 AAACCTTGAAATATTTTTTAAGAAAGATCGGCTTGCTTTGCATGGGAATATTGTCTGTAT
************************************************* *** ******
HS_haplotype1 CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCACAGACTTACTTGGGAGGGTA
HS_assemblymutate_np1212 CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCAGAGACTTACTTGGGAGGGTA
HS_haplotype2 CTTAGTCCCACACTTATTAGATCCATAAATGATGTCCTCAGAGACTTACTTGGGAGGGTA
**************************************** *******************
HS_haplotype1 GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA
HS_assemblymutate_np1212 GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA
HS_haplotype2 GCTGGGAGGCACGGGTTCCATGTTTAAAATAAGTCTTACCAGTGGAAATGGTAGCATAAA
************************************************************
HS_haplotype1 CCGTGTGGGAGGCTTCAGCTATAAAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC
HS_assemblymutate_np1212 CCGTGTCGGAGGCTTCAGCTATAGAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC
HS_haplotype2 CCGTGTCGGAGGCTTCAGCTATAGAATGTTTACAGGGAAAATTAGGCAGAACTGACTGTC
****** **************** ************************************
HS_haplotype1 GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA
HS_assemblymutate_np1212 GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA
HS_haplotype2 GCCCAGGAGTCTGCCTACAGGGCATGGGTTGGTGGTTCCAGGCCCAGCCTCAGTGTCACA
************************************************************
HS_haplotype1 ATTTTTATCAAGCCCTGGCCTTGGGATTGGACAGAATTTAAATATATAGCTCAAAGTCAA
HS_assemblymutate_np1212 ATTTTTATCAAGCCCTGGCCTTGGGATTGGACAGAATTTAAATATATAGCTCAAGGTCAA
HS_haplotype2 ATTTTTATCAAGCCCTGGCCTTGGGATTGGACAGAATTTAAATATATAGCTCAAGGTCAA
****************************************************** *****
HS_haplotype1 GTGTCTGGATTATTTGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG
HS_assemblymutate_np1212 GTGTCTGGATTATATGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG
HS_haplotype2 GTGTCTGGATTATATGGAAGGTAGCTCTAAAAACTTCTCCAACACACCGCCCCACCAATG
************* **********************************************
HS_haplotype1 TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACCTGAGACATGTTTATCTCGGAGC
HS_assemblymutate_np1212 TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACTTGAGACATGTTTATCTCGGAGC
HS_haplotype2 TTCTCTCTTATAACTGGCTTAATAATTTCAGATTTACTTGAGACATGTTTATCTCGGAGC
************************************* **********************
HS_haplotype1 CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT
HS_assemblymutate_np1212 CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT
HS_haplotype2 CACCCCTTTTGTTAGACATTTCTGTGTACCAACATTTTTTCAGGGGGCATTTCTTATAAT
************************************************************
HS_haplotype1 TTATATATGGTTCTTAAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA
HS_assemblymutate_np1212 TTATATATGGTTCTTAAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA
HS_haplotype2 TTATATATGGTTCTGGAGGGGCTCTCTACCTGGCGGGACGGAGGCTTCTGGAATATTTTA
************** ********************************************
HS_haplotype1 CATGATCATACAAAGCTCAGAGGATGAGATGTAGAATGATGGCCTGGGGATGGAGGCTGC
HS_assemblymutate_np1212 CATGATCATACAAAGCTCAGAGGATGAGATGTAGAATGATGGCCTGGGGATGGAGGCTGC
HS_haplotype2 CATAATCATACAAAGCTCAGAGGATGAGATGTAGAATGCTGGCCTGGGGATGGAGGCTGC
*** ********************************** *********************
HS_haplotype1 AGAACTAAGTTATTTCCTGTATTATCTAAGGCTCTTGTAAGTATTAAGTGGCCCTTCCTG
HS_assemblymutate_np1212 AGAACTAAGTTATTTCCTGTATTATCTAAGGCTATTGTAAGTATTAAGTGGCCCTTCCTG
HS_haplotype2 AGAACTAAGTTATTTCCTGTATTATCTAAGGCTATTGTAAGTATTAAGTGGCCCTTCCTG
********************************* **************************
HS_haplotype1 CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGGCCCTCCCAA
HS_assemblymutate_np1212 CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGGCCCTCCCAA
HS_haplotype2 CTGCTAATTTTGTTCATGAGCACTCTCAGCAGACGCATTTTGCCAGGCTGACCCTCCCAA
************************************************** *********
HS_haplotype1 GATGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT
HS_assemblymutate_np1212 GATGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT
HS_haplotype2 GGTGCTGGAGAGAATAAAAGCATGGAAGGCAGGGAAGGCGGGGTGGCTTACCATGGTAAT
* **********************************************************
HS_haplotype1 CCCTTTTATGCAGCATCCCAGAGCTACTAAAAATGTCAGACAAAAATACCCGCTTGGAAA
HS_assemblymutate_np1212 CCCTTTTATGCAGCATCCCAGAGCTACTAAAAATGTCAGACAAAAATACCCGCTTGGAAA
HS_haplotype2 CCCTTTTATGCAGCATCCCAGAGCTACTAAAAATGTCAGACAAAAATACCCGCTTGGAAA
************************************************************
HS_haplotype1 ATCCCCACCTAGGGCCTCCCTACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC
HS_assemblymutate_np1212 ATCCCCACCTAGGGCCTCCCTACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC
HS_haplotype2 ATCCCCACCTAGGGCCTCCCCACCCAGGCTATGTCTCTGAATGCGTCGGGAGCTGGGGGC
******************** ***************************************
HS_haplotype1 TCAGCTGACTGTAGCTATGGTGAGCCAGAACTATTTATTTTTTAGAAGAAAGAAGGGAAA
HS_assemblymutate_np1212 TCAGCTGACTGTAGCTATGGTGAGCCAGAAGTATTTATTTTTTAGAAGAATGAAGGGAAA
HS_haplotype2 TCAGCTGTCTGTAGCTATGGTGAGCCAGAAGTATTTATTTTTTAGAAGAATGAAGGGAAA
******* ********************** ******************* *********
HS_haplotype1 CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC
HS_assemblymutate_np1212 CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC
HS_haplotype2 CAGGACTACAACTTTACTGGGAGAACTAAATGCACAAGTATAGAGAAACGACTTCCACTC
************************************************************
HS_haplotype1 ATCCAGCGCTTTGCACCGTGGGAAATTTTATAAGGACTGACAGAATAGATATGGTTAGTT
HS_assemblymutate_np1212 ATCCAGCGCTGTGCACGGTGGGAAATTTTATAAGGACTGACAGAATATATATGGTTAGGT
HS_haplotype2 ATCCAGCGCTGTGCACGGTGGGAAATTTTATAAGGACTGACAGAATATATATGGTTAGGT
********** ***** ****************************** ********** *
HS_haplotype1 CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATATGAGGTTTTGTGC
HS_assemblymutate_np1212 CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATATGAGGTTTTGTGC
HS_haplotype2 CTCAGTCATAAGTCATGTGTATAATGCAAGGCAGCCCCCTAGGCATATGAGGTTTTGTGC
************************************************************
HS_haplotype1 CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG
HS_assemblymutate_np1212 CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG
HS_haplotype2 CCAAGGTTTCAAAGAAGAAGGTACAAATGATTTCTCGGCATATTTGACTGTAATCACCAG
************************************************************
HS_haplotype1 CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACGCGCCTGTAGTCAGAGAT
HS_assemblymutate_np1212 CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACGCGCCTGTAGTCAGAGAT
HS_haplotype2 CTGTACAAAAAATCTCTCACGCCTGGTTTGGTCCAGCACTACGCGCCTGTAGTCAGAGAT
************************************************************
HS_haplotype1 GGTTCAGGCTGTCCCAGAGTAATGCCTTTGGTCCAGTGATCGCCACTGAGTCCGGCACAG
HS_assemblymutate_np1212 GGTTCAGGCTGTCCCAGAGTAATGCCTTTGGTCCAGTGATCGCCACTGAGTCCGGCACAG
HS_haplotype2 GGTTCAGGCTGTCCCAAAGTAATGCCTTTGGTCCAGTGATCTCCACTGAGTCCTGCACAG
**************** ************************ *********** ******
HS_haplotype1 GAGTGTGCCTGAGAACAGAGGTGTATTTTCTATTAAAAACAATCACAGAGCATCAGAAAT
HS_assemblymutate_np1212 GAGTGTGCCTGAGAACAGAGGTGTATTTTCTATTAAAAACAATCACAGAGCATCAGAAAT
HS_haplotype2 GAGTGTGCCTGAGAACAGAGGTGTATCTCCTATTAAAAACAATCACAGAGCATCAGAAAT
************************** * *******************************
HS_haplotype1 TATAGCTTCCACCAAGGCCAATGTAGCCTCGTGCGGGATAAAACTGCCAAGCGCAGCTAG
HS_assemblymutate_np1212 TATAGCTTCCACCAAGGCCAATGTAGCCTCGTGCGGGATAAAACTGCCAAGCGCAGCTAG
HS_haplotype2 TATAGCTTCCACCAAGGCCAATGTAGCCTCGTGCGGGATAAAACTGCCAAGCGCAGCTAG
************************************************************
HS_haplotype1 GATATTACTTAAAATAAAACATCATCTCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT
HS_assemblymutate_np1212 GATATTACTTAAAATAAAACATCATCGCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT
HS_haplotype2 GATATTACTTAAAATAAAACATCATCGCAGGAGAGGCCAAGACTTCCTGAAAGAAAGCAT
************************** *********************************
HS_haplotype1 TACGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT
HS_assemblymutate_np1212 TGCGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT
HS_haplotype2 TGCGGGCCAATAATAAAACAGTCCAATCACTTTTCTTACTCTTACTGTGTTAGAGAAAGT
* **********************************************************
HS_haplotype1 TTTCTTTTGTCAAAGGCAACATTTTTAGAGCTGCCTAATCGCTACAAGGTGAGATCTTCA
HS_assemblymutate_np1212 TTTCTTTTGTCAAAGGCAACATTTTTAGAGCTGCCTAATCGCTACAAGGTGAGATCTTCA
HS_haplotype2 TTTCTTTTGTCAAAGCCAACATTTTTAGACGTGCCTAATCGCTACAAGGTGAGATCTTCA
*************** ************* *****************************
HS_haplotype1 AGTCCTGACATTCATCAAAAATACCTTCTGCTCACTGTCCTGAGGTACACACCCAGGCAA
HS_assemblymutate_np1212 AGTCCTGACATTCATCAAAAATACCTTCTGCTCACTGTCCTGAGGTACACACCCAGGCAA
HS_haplotype2 AGTCCTGACATTCATCAAAAATTCCTTCTGCTCACTGGCCTGAGGTACACACCCAGGCAA
********************** ************** **********************
HS_haplotype1 ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACACACTTATTTTAT
HS_assemblymutate_np1212 ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACTCACTTATTTTAT
HS_haplotype2 ACGAGGGTTTCTCAGTTTACATTTCTCCACTCTGGCTATGTTCTGACTCACTTATTTTAT
*********************************************** ************
HS_haplotype1 CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCGGATGTAATCTCGAGTTTGTTTCCATATC
HS_assemblymutate_np1212 CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCCGATGTAATCTCGAGTTTGTTTCCATATC
HS_haplotype2 CTGTGGGAAGGTATCCCGTGGCCTCCTGGCCCGATGTAATCTCGAGTTTGTTTCCATATC
******************************* ****************************
HS_haplotype1 ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT
HS_assemblymutate_np1212 ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT
HS_haplotype2 ACCATGATAGGGCATTGTGACTTCCCAACTCTGCCACCGATTCTAAAACAATTTCTGGGT
************************************************************
HS_haplotype1 TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTACTTTTGTATCAATGATGATGTCTTCT
HS_assemblymutate_np1212 TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTACTTTTGTATCAATGATGATGTCTTCT
HS_haplotype2 TGTTAAATGTGACAGCTAGAGGGTCTTTCCATTAGTTTTGTATCAATGATGATGTCTTCT
********************************** *************************
HS_haplotype1 GCTTACAGAGTGTTTCATAACTTTCACTTGATAGGTGCCTGAGCTCTGGTCCCTGGAGTT
HS_assemblymutate_np1212 GCTTACAGAGTGTTTCATAACTTTCACTTGATAGGTGCCTGACCTCTGGTCCCTGGAGTT
HS_haplotype2 GCTTACAGAGTGTTTCATAACTTTCACTTGATATGTGCCTGACCTCTGGTCCCTGGAGTT
********************************* ******** *****************
HS_haplotype1 CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTGGTGGAATCAAATT
HS_assemblymutate_np1212 CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTCGTGGAATCAAATT
HS_haplotype2 CTCCAAATCTTGAGGTTATTTGTACTGACCAAATAAACCATCTAGTCGTGGAATCAAATT
********************************************** *************
HS_haplotype1 GGAAAAATTAAATATGTATTGATGGAGGAATAACTTTGTACCCAGCCGTGGGAACCGCTC
HS_assemblymutate_np1212 GGAAAAATTAAATATGTATTGATGGAGGAATACCTTTGTACCCAGCCGTGGGAACCGCTC
HS_haplotype2 GGAAAAATTAAATATGTATTGATGGAGGAATACCTTTGTACCCAGCCGTGGGAACCGCTC
******************************** ***************************
HS_haplotype1 CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT
HS_assemblymutate_np1212 CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT
HS_haplotype2 CCTTCAAAAAGATATAAAATAATGAGAGGACCCTCGCCTCATTTTTGAATATGGTTCTCT
************************************************************
HS_haplotype1 GAGGAACAAAATGTATGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG
HS_assemblymutate_np1212 GAGGAACAAAATGTAAGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG
HS_haplotype2 GAGGAACAAAATGTAAGGTGGGGAGTAAGGAATATATGCTTTTTATTTTTACTACAGGTG
*************** ********************************************
HS_haplotype1 GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATATAAAATTATGGGTTTGAGGCAGG
HS_assemblymutate_np1212 GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATATAAAATTATGGGTTTGAGGCAGG
HS_haplotype2 GCGGGGAATGGGGGCTCGGGTTATGTGTAAAAATATATAAAATTATGGGTTTGAGGCAGG
************************************************************
HS_haplotype1 ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC
HS_assemblymutate_np1212 ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC
HS_haplotype2 ACGTCTGCAGTGGCCCATTGCAAGAATAGTGAGAATCATTTGGTTTCCTTCAGGCTGACC
************************************************************
HS_haplotype1 AGTCGTTCATCTGAACCACCCCAGGTATGAGATTGTCTCCATAAGCGGATCAGCCTCACA
HS_assemblymutate_np1212 AGTCGTTCATCTGAACCACCCCAGGTATGAGATTGTCTCCATAAGCGGATCAGCCTCACA
HS_haplotype2 AGTCGTTCATCTGAACCACCCCAGGTATGAGATTGTCTCCATAAGCGGATCAGCCTCACA
************************************************************
HS_haplotype1 TGATATATGTGAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC
HS_assemblymutate_np1212 TGATATATGTGAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC
HS_haplotype2 TAATATATGTGAACATGGGAAGGGGAACATGGAGACTCAGCATTTTTACTGTGTCCTCCC
* **********************************************************
HS_haplotype1 ACCGTGTGGAGCGGCCACAGCTGAAGGAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC
HS_assemblymutate_np1212 ACCGTGTGGAGCGGCCACAGCTGAAGGAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC
HS_haplotype2 ACCGTGTGGAGCGGCCACAGCTGAAGCAAAGAGAAGCATGTAAGTCCTGAGGTTGCAGGC
************************** *********************************
HS_haplotype1 CACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCAAGGGGA
HS_assemblymutate_np1212 CACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCTAGGGGA
HS_haplotype2 GACAGTAGTTCCGCCGCGGTGTGGAGGAGTGAGGAGTTATGGATAAGTTCCCCTAGGGGA
**************************************************** ******
HS_haplotype1 GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG
HS_assemblymutate_np1212 GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG
HS_haplotype2 GACAAGCCACACAGTTTACAGCATTGCAGTGGTAGGGTGTATGTAATTGTGTCTCGCCTG
************************************************************
HS_haplotype1 GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAGCGCGACTGTTC
HS_assemblymutate_np1212 GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAACGCGACTGTTC
HS_haplotype2 GGTCTCCCACAGCCTGGTATATAAAACATAATTCAGCCTGGGCATGGAACGCGACTGTTC
************************************************ ***********
HS_haplotype1 AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCATTGTGGCTCATTCCTTCAG
HS_assemblymutate_np1212 AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCAGTGTGGCTCATTCCTTCAG
HS_haplotype2 AACCCAGATGTTAGAAGAATCCTCCAGTTAAAATGCAACCAGTGTGGCTCATTCCTTCAG
***************************************** ******************
HS_haplotype1 AAATATTATTAATGTAAAAACTCGTCCTCATATAAATAGAAATTCCCCTCCACAACAAAC
HS_assemblymutate_np1212 AAATATTATTAATGTTAAAACTCGTCCTCATATAAACAGTCATTCCCCTCCACAACAAAC
HS_haplotype2 AAATATTATTAATGTTAAAACTCGTCCTCATATAAACAGTCATTCCCCTCCACAACAAAC
*************** ******************** ** *******************
HS_haplotype1 CATGCTTTGGAACATTCCCCTCTACCCTTCCTAAGGGACCCAGTAAGGTAACTACCCGGG
HS_assemblymutate_np1212 CATGCTTTGGAACTTTCCCCTGTACCCTGCCTAATGGACCCAGTAAGGTAACTACCCGGG
HS_haplotype2 CATGCTTTGGAACTTTCCCCTGTACCCTGCCTAATGGACCCAGTAAGGTAACTACCCGGG
************* ******* ****** ***** *************************
HS_haplotype1 CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT
HS_assemblymutate_np1212 CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT
HS_haplotype2 CCTCTGCAGGGGTGCCTGCCAGTCACTGCCTCAAAGCATGACAGGTGAGCCCACTGCACT
************************************************************
HS_haplotype1 TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT
HS_assemblymutate_np1212 TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT
HS_haplotype2 TTAAAATAAATCCCCACCTGTTTGTAATATATTCAAGAGTGCCACACAGTTTAGTTTAAT
************************************************************
HS_haplotype1 GGGAAGAGCCTACATGGCCAGACAGGTGCGTTTGATTACAGTAGGCCCATTTGTAGAAAA
HS_assemblymutate_np1212 GGGAAGAGCCTACATGGCCAGACAGGTGCGTTTGATTACAGTAGGCCCATTTGTAGAAAA
HS_haplotype2 GGGAAGAGCCTACATGGCCAGACAGGTGGGTTTGATTACAGTAGGCCCATTTGTAGAAAA
**************************** *******************************
HS_haplotype1 ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCGAGCGGCACAAATGGAGTTT
HS_assemblymutate_np1212 ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCCAGCGGCACAAATGGAGTTT
HS_haplotype2 ATATCCCAGCTTGAGGTTTTGGGACAGTACCTGTTGTCTCCAGCGGCACAAATGGAGTTT
**************************************** *******************
HS_haplotype1 TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCGCGCAGGAATCACCTTTGCTTCTT
HS_assemblymutate_np1212 TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCTCGCAGGAATCACCTTTGCTTCTT
HS_haplotype2 TCCTTTAAATTTGGCAAAAGAGGCCCCGGAGGGCCCTCGCAGGAATCACCTTTGCTTCTT
************************************ ***********************
HS_haplotype1 TCTATAAAAAATAAGCTTCTCAGAACAATTAATTTATATGCGAGGATGGTGAGAGACAGT
HS_assemblymutate_np1212 TCTATAAAAAATAAGCTTCTCAGAACAATTAATTTTTATGCGAGGATGGTGAGAGACAGT
HS_haplotype2 TCTATAAAAAATAAGCTTCTCAGAACAATTAATTTTTATGCGAGGATGGTGAGAGACAGT
*********************************** ************************
HS_haplotype1 GTCCTGTGGAAGACGTCTCAGGGAAAGATTTCAGTAATCCTGAAGCAAGGTGTTGCAGGC
HS_assemblymutate_np1212 GTGCTGTGAAAGACGTCTCAGGGAAAGATTTCAGTAATCCTGAAGCAAGGTGTTGCAGGC
HS_haplotype2 GTGCTGTGAAAGACGTCTCAGGGAAAGATTTCAGTAATCCTGAAGCAAGGTGTTGCAGGC
** ***** ***************************************************
HS_haplotype1 GTGGTTTTTGGAAGGTGAATCATAGCAAGAGAATTCTGGAGACACACAGAACTTGAGGCT
HS_assemblymutate_np1212 GTGGTTTTTGGAAGGTGAATCATAGCAAGAGAATTCTGGAGACACACAGAACTTGAGGCT
HS_haplotype2 GTGGTTTTTGGAAGGTGAATCATAGCAAGATAATTCTCGAGCCACACAGAACTTGAGGCT
****************************** ****** *** ******************
HS_haplotype1 TACCTTTTTTGTGAACAGATCTGCTGGGAGAGGCCACAACTAGATAGCCAAACATTCTCA
HS_assemblymutate_np1212 TACCTTTTTTGTGAACAGATCTGCTGGGAGAGGCCACAACTAGATAGCCAAACATTCTCA
HS_haplotype2 TACCTTTTTCGTGAACAGATCTGCTGGGAGAGGCCACAACTAGATAGCCAAACATCCTCA
********* ********************************************* ****
HS_haplotype1 AAAATGGTGTGTGCACTAGCCCCTAGTTAGGTGGTTCAGTCAGTTTATCACCGTGATCTC
HS_assemblymutate_np1212 AAAATGGTGTGTGCACTAGCCCCTAGTTAGGTGGTTCAGTCAGTTTATCACCGTGATCTC
HS_haplotype2 AAAATGGTGTGTGCACTAGCCCCTAGTCAGGTGGTTCAGTCAGTTTATCACCATGATCTC
*************************** ************************ *******
HS_haplotype1 TAATTTGGGAGGAGACAAATAGTCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT
HS_assemblymutate_np1212 TAATTTGGGAGGAGACAAATAGTCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT
HS_haplotype2 TAATTTGGGAGGAGACAAATAATCCCTTACTGTTTTTGAGACTTCTGGGGATAAGGATGT
********************* **************************************
HS_haplotype1 CTACAGTGTTACCGGTTTTTGAGACTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG
HS_assemblymutate_np1212 CTACAGTGTTACCGGTTTTTGAGACTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG
HS_haplotype2 CTACAGTGTTACCGGTTTTTGAGATTCTTGTTCTGAATTGTCTATAGGCTGCTCTGCTGG
************************ ***********************************
HS_haplotype1 GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT
HS_assemblymutate_np1212 GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT
HS_haplotype2 GTACTGGTAAAAGATAAATGCTTCCATTTATCTATAGTTGTCTGAAGTTAAACTTCGCTT
************************************************************
HS_haplotype1 TTTACCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT
HS_assemblymutate_np1212 TTTAGCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT
HS_haplotype2 TTTAGCTGCAATTCAAGGCAGCTATCTCAACAAATTTCAGTCATTTAGGACTTTGCCATT
**** *******************************************************
HS_haplotype1 ATGAACATTGTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG
HS_assemblymutate_np1212 ATGAACATTGTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG
HS_haplotype2 ATGAACATTTTTATAGAGGTCTTTTTGGGAGGAAATTGAGCCAGGAGAAGGAAGCTGAAG
********* **************************************************
HS_haplotype1 TGAGCCAAATGAATATTTATTGGGGTGGGATTTGATTCTTTGCTCTTTTTCACACAAAAG
HS_assemblymutate_np1212 TGAGCCAAATGAATATTTATTGGGGTGGGATTTGATTCTTTGCTCTTTTTCACACAAAAG
HS_haplotype2 TGCGCCAAATGAATATTTATTGGGGTGGGAATTGATTCTTTGCTCTTGTTCACACAAAAG
** *************************** **************** ************
HS_haplotype1 TACTAAAAGAACCATGCTTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT
HS_assemblymutate_np1212 TACTAAAAGAACCATGCTTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT
HS_haplotype2 TACTAAAAGAACCATGATTCAAAGGAGTCTTGTAATATTTCAAAATTTTTCTGGTGCGTT
**************** *******************************************
HS_haplotype1 CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC
HS_assemblymutate_np1212 CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC
HS_haplotype2 CCTGACATAAGGACAGCACAACCTTCATTACTAAGAGGTTATAAATAAATCTTTTTAGCC
************************************************************
HS_haplotype1 AATATTATATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAATTACACTCCC
HS_assemblymutate_np1212 AATATTATATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAATTACACTCCC
HS_haplotype2 AATATTATATTCAGGATGGGAAAATGAACTGTATTGTCAGGGGGCAGAAAATACACTCCC
************************************************** *********
HS_haplotype1 TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG
HS_assemblymutate_np1212 TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG
HS_haplotype2 TACAATATATTATTTGAAGAAATAGCAATTGCAAACTCAAGTCAGTTATGTGTGAAGCAG
************************************************************
HS_haplotype1 CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGATGGGCCCAGCAAG
HS_assemblymutate_np1212 CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGCTCGGCCCAGCAAG
HS_haplotype2 CACTATCTAACTTAAACTGAAACCATCATTAATTGCAAAGTGGTGGCTCGGCCCAGCAAG
********************************************** * ***********
HS_haplotype1 ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGTGTCCATTCCAGGGACTCAAAGTAA
HS_assemblymutate_np1212 ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGGGTCCATTCCAGGGACTCAAAGTAA
HS_haplotype2 ATAATCCCAGCTCTGACCTCTTCCTTCTAGTAAGGGGTCCATTCCAGGGACTCAAAGTAA
*********************************** ************************
HS_haplotype1 TGACTGGTCTCTCCAACAGGAGGAAGCAATTAGCTACATATCTTCACGACTTAATTTGGA
HS_assemblymutate_np1212 TGACTGGTCTCTCCAACAGGCGGAAGCAATTAGCTACATATCTTCAGGACTTAATTTGGA
HS_haplotype2 TGACTGGTCTCTCCAACAGGCGGAAGCAATTAGCTACATATCTTCAGGACTTAATTTGGA
******************** ************************* *************
HS_haplotype1 AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA
HS_assemblymutate_np1212 AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA
HS_haplotype2 AAAGGATTTCTTGAAATACCTTAAATAGAGAAGATGTCTATGACCAGAGTAGCAGAGTAA
************************************************************
HS_haplotype1 AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCCTTT
HS_assemblymutate_np1212 AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCTTTT
HS_haplotype2 AACCCAGATCGGAGGATAGTGACCCCTCGCATTACAGCTATAAAAATTATATATTCTTTT
******************************************************** ***
HS_haplotype1 TAGGAGGACAGGCATATTCAGAGCAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG
HS_assemblymutate_np1212 TAGGAGGACAGGCATATTCAGAGCAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG
HS_haplotype2 TAGGAGGACAGGCATATTCAGAGGAAGCTTGAAGAAGTCAAGAAGACCACATGATAACAG
*********************** ************************************
HS_haplotype1 AGAATCTCAGAGTTTTTGGGGGGTTTATCCTTCTACTTTTTTAGAACTCATTCAGTAGAG
HS_assemblymutate_np1212 AGAATCTCAGAGTTTTTGGGGGGTTTATCCTTCTACTTTTTTAGAACTCATTCAGTAGAG
HS_haplotype2 AGAATCTCAGAGTTTTTGGGGGGTTTATCCTTCTACTTTTTTAGAACTCATTCAGTAGAG
************************************************************
HS_haplotype1 TCCAGGACAAGCAATAAGGGTGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT
HS_assemblymutate_np1212 TCCAGGACAAGCAATAAGGGTGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT
HS_haplotype2 TCCAGGACAAGCAATAAGGGTGGTGAGACATGAGTATGACTAAATACAAGGCCAGATGGT
************************************************************
HS_haplotype1 CCTGATACAAGGAAGCTTGGGTCTTAAGGAACTCTTCTGCCCGGGCCCGAAAATATTTAT
HS_assemblymutate_np1212 CCTGATACAAGGAAGCTTGGGTCTTAAGTAACTCTTCTGCCCGGGCCCGAAAATATTTAT
HS_haplotype2 CCTGATACAAGGAAGCTTGGGTCTTAAGTAACTCTTCTGCCCGGGCCCGAAAATATTTAT
**************************** *******************************
HS_haplotype1 CTACTCCTGGTCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGTATTAACTATTATATA
HS_assemblymutate_np1212 CTACTCCTGGTCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGTATTAACTATTATATA
HS_haplotype2 CTACTCCTGGTCTCAAGTAGCTAAAAAAAAAATTTCCTTTTGAGAATTAACTATTATATA
******************************************** ***************
HS_haplotype1 TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGAGGCCATTCCTGTGTCTTTCCAT
HS_assemblymutate_np1212 TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGAGGCCATTCCTGTGTCTTTCCAT
HS_haplotype2 TTCTTAAAAAGATTTAACCTGAGGAGGGGTAGGCTAGCGGCCATTCCTGTGTCTTTCCAT
************************************* **********************
HS_haplotype1 ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC
HS_assemblymutate_np1212 ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC
HS_haplotype2 ATCTCTACTCTGTGCCAGCTAATTCACACCCCAGACAAGCTATGGAACACTGCTAGGCTC
************************************************************
HS_haplotype1 TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT
HS_assemblymutate_np1212 TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT
HS_haplotype2 TGTAGTTATTACTGGCTCACCCCGTCTTCTGGGAGAAATGATAGACCTGTTTTAGTAGCT
************************************************************
HS_haplotype1 GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA
HS_assemblymutate_np1212 GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA
HS_haplotype2 GGTCCTCAGTCTCTACCGGAGCAGGCATGTTAGAAATAAGCCACTATTGCCCGTGTTGTA
************************************************************
HS_haplotype1 GATGCGCCCCTCATTATAATTATCCCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA
HS_assemblymutate_np1212 GATGCGCCCCTCATTATAAAAATACCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA
HS_haplotype2 GATGCGCCCCTCATTATAAAAATACCCAGCTAATCTTTACAGGAGACTCTAATATGGCCA
******************* ** ************************************
HS_haplotype1 CCGTGCCAGGAGGGCGTAAATTGTGGGAATAGGTGTGCTGAGACAGCAAGAGACAACTTG
HS_assemblymutate_np1212 CCGTGCCAGGAGGGCGTAAATTGTGGGAATGGGTGTGATGAGACAGCAAGAGACAACTTG
HS_haplotype2 CCGTGCCAGGAGGGCGTAAATTGTGGGAATGGGTGTGATGAGACAGCAAGAGACAACTTG
****************************** ****** **********************
HS_haplotype1 TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATACAGCTGAGCTGACTCATTTTTCAT
HS_assemblymutate_np1212 TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATACAGCTGAGCTGACTCATTTTTCAT
HS_haplotype2 TTAAAGTGGTAACTTAAGTCACTTTAATTAATGATACATCTGAGCTGACTCATTTTTCAT
************************************** *********************
HS_haplotype1 GTCCTCAAAGTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGTCAGGCGGC
HS_assemblymutate_np1212 GTCCTCAAAGTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGTCAGGCGGC
HS_haplotype2 GTCCTCAAACTCTAAGTTCCAACCAACTAAATATTTAGTCCTTTTACTGTGCGAGGCTGC
********* ***************************************** **** **
HS_haplotype1 TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGAATGATTGTATGAATAA
HS_assemblymutate_np1212 TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGAATGATTGTATGAATAA
HS_haplotype2 TCTTCCGAATATACCAAGTCCTCCCTCTATCTGGCGACTCCAGGATGATTGTATGAATAA
******************************************* ****************
HS_haplotype1 ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT
HS_assemblymutate_np1212 ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT
HS_haplotype2 ATGATATTAAATCCCTGCCAAAAGCTTGCAGCCAGTGCTCTGACCGTATTTTAATTTAGT
************************************************************
HS_haplotype1 TTTTAATCCCTGGGATGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA
HS_assemblymutate_np1212 TTTTAATCCCTGGGATGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA
HS_haplotype2 TTTTAATCCCTGGGAGGCCGGACCAGCACTCTGTGGTAGGAAACATAGGACTATGTTTTA
*************** ********************************************
HS_haplotype1 CTCTTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGGCCT
HS_assemblymutate_np1212 CTCTTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGGCCT
HS_haplotype2 CTATTTTTTTTGAGACTGTGTATGCAGGAGGCGGGAGGAGGTTTCATTTGAGAAGGTCCT
** ***************************************************** ***
HS_haplotype1 CAGGTAGCCACTATTTTTCCTCCCTAAGCTGGAATTCTAAAGGTCTTCGATTTACTGTGA
HS_assemblymutate_np1212 CAGGTAGCCACTATTTTTCCTCCCTAAGCTGGAATTCTAAAGGTCTTCGATTTACTGTGA
HS_haplotype2 CAGGTAGCCGCTATTTTTCCTCCCTAAACTGGAATTCTAAAGGTCTTCGATTTACTGTGA
********* ***************** ********************************
HS_haplotype1 GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA
HS_assemblymutate_np1212 GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA
HS_haplotype2 GCCTTCTCCATGCCTACAAAAGAGCTCCATAGTCCCCGCGGGAGATTCTTCATTTTTAAA
************************************************************
HS_haplotype1 TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTGGGAGGTCTCCCC
HS_assemblymutate_np1212 TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTCGGAGGTCTCCCC
HS_haplotype2 TTGAGCCAACAGTGGTGGCGCGCGCGGGACTTTATTTTGACATAAGTCGGAGGTCTCCCC
*********************************************** ************
HS_haplotype1 ACTAAATGGAACTATTTTATGCTTGAGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT
HS_assemblymutate_np1212 ACTAGATGGAACTATTTTATGCTTGAGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT
HS_haplotype2 ACTAGATGGAACTATTTTATACTTGAGGAGAGTAGGCCTCCTCTGGGTATAAAAGAAAAT
**** *************** ***************************************
HS_haplotype1 TTATAGCCTGGGAGAGATGATGGTCTTCTCCTGACAGATCACCCTTTCATGATTATACAA
HS_assemblymutate_np1212 TTATAGCCTGGGAGAGATGATGGTCTTCTCCTGACAGATCACCCTTTCATGATTATACAA
HS_haplotype2 TTATAGCCTGGGAGAGATGAAGGTCTTCTCCTGAGAGATCACCCTTTCATGATTATACGA
******************** ************* *********************** *
HS_haplotype1 ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG
HS_assemblymutate_np1212 ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG
HS_haplotype2 ACTTATCTATTACCCTGGTACACAAAAAATATACATCTCTTGGCTCTTTCCCAAGTAATG
************************************************************
HS_haplotype1 AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT
HS_assemblymutate_np1212 AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT
HS_haplotype2 AGTTTTGGCCAAGATAAACTCAGGGGCTGAAAGGTGAAACACGTAAAGTGTACCCTCACT
************************************************************
HS_haplotype1 CTGTCCAACATGATAGCTCTCTGTCATAGTTTCTTTTTTAATCTATGGGGCTGAAGAAAA
HS_assemblymutate_np1212 CTGTCCAACATGATAGCCCTCTGTCATAGTTTCTTTTTTGATCTATGGGGCTGATGAAAA
HS_haplotype2 CTGTCCAACATGATAGCCCTCTGTCATAGTTTCTTTTTTGATCTATGGGGCTGATGAAAA
***************** ********************* ************** *****
HS_haplotype1 CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT
HS_assemblymutate_np1212 CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT
HS_haplotype2 CTGTAACACAGTTCTGTAAACTCATAAACATTGCATATTTACTTGGCTATGTAAGCTTCT
************************************************************
HS_haplotype1 TAGTAGCTGAGTGTTTGAAGCAAACACAGACTGTGTAGCCGAGATTTTTCTTCCTGTGTG
HS_assemblymutate_np1212 TAGTAGCTGAGTGTTTGAAGCAAACACAGACTGTGTAGCCGAGATTTTTCTTCCTGTGTG
HS_haplotype2 TAGTAGCTTAGTGTTTGAAGCAAACACAGATTGTGTAGCCGAGATTTTTCTTCCTGTATG
******** ********************* ************************** **
HS_haplotype1 GCAGCAAAATAAGTGATAGTAGATTGGAACCCGCCTGGACTCTTTTTAAATGGGGGTCGC
HS_assemblymutate_np1212 GCAGCAAAATAAGTGATAGTAGATTGGAACCCGCCTGGACTCTTTTTAAATGGGGGTCGC
HS_haplotype2 GCAGCAAAATAACTGAGAGTAGATTGGAACCCGCCTGGACTCTGTTTAAATGGGGGTCGC
************ *** ************************** ****************
HS_haplotype1 CCACGCATGCGCCGCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT
HS_assemblymutate_np1212 CCACGCATGCGCCGCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT
HS_haplotype2 CCACGCATGCGCCGCTCGTTAACTACTGTTCAGAGAGATTATTTAAAGTATCTACTATGT
************************************************************
HS_haplotype1 AGTTTTGTCTATGCAAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC
HS_assemblymutate_np1212 AGTTTTGTCTATGCAAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC
HS_haplotype2 AGTTTTGTCTATGACAGAGTGTCAGGACAACTCAGGAGGGAGGCTGATCTTGATCATAGC
************* *********************************************
HS_haplotype1 TATGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA
HS_assemblymutate_np1212 TATGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA
HS_haplotype2 TTTGCTATGGAAGAAAATCAAAAGCAACCCAGCCCACTGCACCATGCCTGACTTTACAAA
* **********************************************************
HS_haplotype1 CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTAGTGTGTTCAGCAATCCCA
HS_assemblymutate_np1212 CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTACTTTGTTCAGTAATCCCA
HS_haplotype2 CTGCTGTAATTGCTGGTCTTTTTACAGCCAGGCAGCCCACTACTTTGTTCAGTAATCCCA
****************************************** * ******* *******
HS_haplotype1 GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA
HS_assemblymutate_np1212 GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA
HS_haplotype2 GCAGAGGTGCTCTTTACCCCATGAAATTTTCCAAAGAGAGGCAAGGCAGGAATTCCCCCA
************************************************************
HS_haplotype1 TTATTTTGAACCTGGAGAGAACACCTGGAAAAGTGGAAACATTCCCAGGAGGGAACATCT
HS_assemblymutate_np1212 TTATTTTGAACCTGGAGAGAAGACCTGGAAAAGTGGAAACATTCCCAGGAGGGAACATCT
HS_haplotype2 TTATTTTGAACCTGGAGAGAAGACCTGGAAAAGTGGAAACATTCCCAGGAGGAAACATCT
********************* ****************************** *******
HS_haplotype1 GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA
HS_assemblymutate_np1212 GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA
HS_haplotype2 GTGTAAAAATGCTCAATATCGGCCCAGCTCAGAGACATAGCACACATGGCAAGAACCCTA
************************************************************
HS_haplotype1 AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA
HS_assemblymutate_np1212 AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA
HS_haplotype2 AAGGCATGCAACATGATATAACATGTCTGTATTTTTAGAGAATTTCTAAAACATGGAAGA
************************************************************
HS_haplotype1 TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT
HS_assemblymutate_np1212 TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT
HS_haplotype2 TATAATTTTATGAACAACTATGAATAATTTTCTACTCAGCTACTCATCCAACAAAGCACT
************************************************************
HS_haplotype1 TGAGCTCACCTTTATCTACCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA
HS_assemblymutate_np1212 TGAGCTCACCTTTATCTACCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA
HS_haplotype2 TGAGCTCACCTTTATCTACCACATCAAGACAATTCCGGCTTCCTATATTTTTTGGCATCA
************************************************************
HS_haplotype1 TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG
HS_assemblymutate_np1212 TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG
HS_haplotype2 TCTCTTTATTATATACTATGTGCAAACAGCTCACTTGGCTCATCACATATTAACATCCTG
************************************************************
HS_haplotype1 CTTATTCCACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA
HS_assemblymutate_np1212 CCTATTCGACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA
HS_haplotype2 CCTATTCGACATGACCTGTCTATACTGCATCTAAAGGATGGTACGTGGCTCTGTCACAAA
* ***** ****************************************************
HS_haplotype1 AGAAATACAAAGGGGGACGAGGAGTGATGCCACCCGGGCAGATTCTGGAGACTACACATG
HS_assemblymutate_np1212 AGAAATACAAAGGGGGACGAGGAGTGATGCCACCCGGGCAGATTCTGGAGACTACACATG
HS_haplotype2 AGAAATACAAAGGGGGACGAGGAGTGATGCCACCCGGGCAGATTCTGGAGACTACACATG
************************************************************
HS_haplotype1 ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC
HS_assemblymutate_np1212 ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC
HS_haplotype2 ACAAAACCTGGCTCATTACTTTTGAGAGTAAAGCATTCTTTATGATCACGGTGGCACATC
************************************************************
HS_haplotype1 TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA
HS_assemblymutate_np1212 TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA
HS_haplotype2 TCAACCTGGAATCGCACCCAGTACTTCAGTCCTCCAAACTGAGGCATCGAGGCAGGAGAA
************************************************************
HS_haplotype1 AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC
HS_assemblymutate_np1212 AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC
HS_haplotype2 AATGCCATTCAGGAGGCTAAAAATTCCATGATCCTTTATTTACACAAAAATTTGCCCCTC
************************************************************
HS_haplotype1 TACCTGTAGCCCCACCATATGGTGCGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA
HS_assemblymutate_np1212 TACCTGTAGCCCCACCATATGGTGCGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA
HS_haplotype2 TACCTGTAGCACCACCATATGGTGTGTATCCACTGCTCTGTCCCCCGGCAGGCCCTTACA
********** ************* ***********************************
HS_haplotype1 GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT
HS_assemblymutate_np1212 GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT
HS_haplotype2 GTGCCCGGCAAGGCTAGTTAGCTTCAGAGGCCAAGCCCTGTAATTCTGGACTACAGAGCT
************************************************************
HS_haplotype1 GGCCATCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACAGCTGTT
HS_assemblymutate_np1212 GGCCATCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACAGCTGTT
HS_haplotype2 GGCCTTCACCTTTATTAATGATCCTTTGGGGAGTGCTTTCTTCTCTTCAGAACGGCTGTT
**** ************************************************ ******
HS_haplotype1 ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA
HS_assemblymutate_np1212 ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA
HS_haplotype2 ACCTTGTTAGAAATTGGCTAAAAGGATGTACTCCGTCCACCTCCCCGCCAGGCAGGGGGA
************************************************************
HS_haplotype1 AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT
HS_assemblymutate_np1212 AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT
HS_haplotype2 AATAAACACAGCTGCGGCTAATCTCAGAAGTGCAGGGCACATCATATTGATGAATGTGTT
************************************************************
HS_haplotype1 ACTGGGAAAGGGAATGTAAAGGAGATATCTCAAATTACAAGAGGCAGGAGGCCGGTAAAA
HS_assemblymutate_np1212 ACTGGGAACGGAAATGTAAAGGAGATATCTCAAAAAACAAGAGGCAGGAGGCCGGTAAAA
HS_haplotype2 ACTGGGAACGGAAATGTAAAGGAGATATCTCAAAAAACAAGAGGCAGGAGGCCGGTAAAA
******** ** ********************** ************************
HS_haplotype1 GTGTGATCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA
HS_assemblymutate_np1212 GTGTGGTCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA
HS_haplotype2 GTGTGGTCACAATAGTGTGAGGTGCAGTGTTCATTCAGACAGAGGTTAAAGCCAGAACAA
***** ******************************************************
HS_haplotype1 TGAATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTCGCCTAGAGT
HS_assemblymutate_np1212 TGCATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTCGCCTAGAGT
HS_haplotype2 TGCATCACTTTGTCTCAAAGATGTCAAGGCAGTGTCAGTCAGCCTCAGCTGGCCTAGAGT
** *********************************************** *********
HS_haplotype1 GAGTGGTCTGCAGCGCCACATCAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC
HS_assemblymutate_np1212 GAGTGGTCTGCAGCGCCACATCAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC
HS_haplotype2 GAGTGGTCTGCAGCGCCACATAAGCTGCGTGGTCTTTTATCTAAAAACTTTAAAAACAGC
********************* **************************************
HS_haplotype1 TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAAATA
HS_assemblymutate_np1212 TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAATTA
HS_haplotype2 TAATTGAAGCATCTCCAGAGCAGTCGGGCCTAAGTGCCACGACCAATAATCGTAGAATTA
********************************************************* **
HS_haplotype1 ATTATGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACTTTGGGTGCA
HS_assemblymutate_np1212 ATTCTGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACTTTGGGTGCA
HS_haplotype2 ATTCTGGTCCCCGTCTACTTGGATCTGGCCGGCGGAAGTCACTTGAGCACTTTGGGTGCA
*** ********************************************************
HS_haplotype1 GCCGAAGTTTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG
HS_assemblymutate_np1212 GCCGAAGTTTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG
HS_haplotype2 GCCGAAGTTTATAGGCCCCGTGGATAATAACTTGATCCCTCCTTTCCCCAGACTGCTGGG
************************************************************
HS_haplotype1 AAGGGAGAAAAATACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC
HS_assemblymutate_np1212 AAGGGAGAAAAATACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC
HS_haplotype2 AAGGGAGAAAATTACTATAGATATTGTTTGTTTTAATTTGACGCAACCTATCCTGTACTC
*********** ************************************************
HS_haplotype1 GTGAGCCCCTCCCCCTTTAATACATTTCGTTTCAAAATATTTGCTGGGTTCACTCCAGGT
HS_assemblymutate_np1212 GTGAGCCCCTCCCCCTTTAATACATTTCGTTTCAAAATATTTGCTGGGTTCACTCCAGGT
HS_haplotype2 GTGAGCCCCTCCCCCTTTAATACATTTTGTTTCAAAATATTTGCTGGGTTCACTCCAGGT
*************************** ********************************
HS_haplotype1 TTATGACCATGAGATCCAAGTCCCGCAGGCAGGCGCCTCAGCACTCTGTATAACTGATCC
HS_assemblymutate_np1212 TTATGACGATGAGATCCAATTCCCGCAGGCAGGCGCCTCAGCACTCTATATAACTGATCC
HS_haplotype2 TTATGACGATGAGATCCAATTCCCGCAGGCAGGCGCCTCAGCACTCTATATAACTGATCC
******* *********** *************************** ************
HS_haplotype1 CAGAAGCTAACTTCATGATGGGATATCCCTTCATTCATCACATACGCTAGCTGGGCCCAC
HS_assemblymutate_np1212 CAGAAGCTTACTTCATGATGGGATATCGCTTCATTCATCACATACGCTAGCTGGGCCCAC
HS_haplotype2 CAGAAGCTTACTTCATGATGGGATATCGCTTCATTCATCACATACGCTAGCTGGGCCCAC
******** ****************** ********************************
HS_haplotype1 CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT
HS_assemblymutate_np1212 CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT
HS_haplotype2 CAACCTTATGATGACAATGATTAAGGAAGAACCAGGCAGGTCCACCCGGCTGTGTCCCAT
************************************************************
HS_haplotype1 GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGTG
HS_assemblymutate_np1212 GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGTG
HS_haplotype2 GTTTCCTTTTATTATATTTTCTTAAGGTGCATGATGGATGAATAGGTAGAACAAATTGGG
********************************************************** *
HS_haplotype1 AGGGAGCCACTGGATGTGATATGTTACTTACTTCCCTTTTTTAAATTGGCTCCATTAGAT
HS_assemblymutate_np1212 AGGGAGCCACTGGATGTGATATGTTACTTACTTCCCTTTTTTAAATTGGCTCCATTAGAT
HS_haplotype2 AGGGACCCACTGGATGTGATATGTTACTTACTTCCCTTTTTTAAATTGGCTCCATTAGAT
***** ******************************************************
HS_haplotype1 TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTG
HS_assemblymutate_np1212 TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTT
HS_haplotype2 TTTCTTTTGTGTGTGTAAAAATTAAGCCCGAGGCCAGAATGAGAGTGGCTCAACTCCTTT
***********************************************************
HS_haplotype1 TCAGATTTCCCTGTCTACCAAATGGCAGATAAATAAGAGGGGAAAACTGGAGTAATTGGT
HS_assemblymutate_np1212 TCAGATTTCCCTGTCTACCAAATGGCAGATAAATAAGAGGGGAAAACTGGAGTAATTGGT
HS_haplotype2 TCAGATTTCCCTGTCTACGAAATGGCAGATAAATAAGAGGGGAAAACTCGAGTAATTGGT
****************** ***************************** ***********
HS_haplotype1 TAAGGGAGGCATGGCGTGAAAATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA
HS_assemblymutate_np1212 TAAGGGAGGCATGGCGTGAAAATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA
HS_haplotype2 TAAGGGAGGCATGGCGTGAATATAGATGGTTTTCCTCAAACCTTTTCTTCCTAGGTCCAA
******************** ***************************************
HS_haplotype1 CAATGTGTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA
HS_assemblymutate_np1212 CAATGTGTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA
HS_haplotype2 CAATGTCTAAGCACTCAACTCCCTTAGTGTCTCCTATGTATGTTTAAAGTTAAAATAAAA
****** *****************************************************
HS_haplotype1 TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGCGAGCTTACAACGGCAGCCTCT
HS_assemblymutate_np1212 TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGCGAGCTTACAACGGCAGCCTCT
HS_haplotype2 TTTTGCAGGAAGAGACACCCTGGGCTTCCTTGAGGCTGGGAGCTTACAACGGCAGCCTCT
************************************** *********************
HS_haplotype1 TTTTAGTTTGTCACTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC
HS_assemblymutate_np1212 TTTTAGTTTGTCACTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC
HS_haplotype2 TTTTAGTTTGTCGCTCCGGCCTCGGCTAACAATGATAGACACTCCTGGGCTGAAACCTCC
************ ***********************************************
HS_haplotype1 TGCTCTGCCTAAGTAAAAATCACCCCAACCCACACATATGCACCGGCACGTTTTTTAGTA
HS_assemblymutate_np1212 TGCTCTGCCTAAGTAAAAATCACCCCAACCCACACATATGCACCGGCACGTTTTTTAGTA
HS_haplotype2 TGCTCTGCCTAAGTAAAAATCACCCCAAGCCACACATATGCACCGGCACGTTTTTTAGTA
**************************** *******************************
HS_haplotype1 GTTTTACACATTTGAGATCGCACAGCTTTCATTATAGCATAGGAAGGTGCTATACAAAGG
HS_assemblymutate_np1212 GTTTTACACATTTGAGATCGCACAGCTTTCATTATAGCATAGGAAGGTGCTATACAAAGG
HS_haplotype2 GTTTTACACATTTGAGATCGCACAGCTCTCATTATAGCATAGGAAGGTGCTATACAAAGG
*************************** ********************************
HS_haplotype1 GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT
HS_assemblymutate_np1212 GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT
HS_haplotype2 GGTGGCTCATCCCTCAGTTACACTGATAATATTAAGAGAAGCTCAGTAGACTTGCACGCT
************************************************************
HS_haplotype1 CAGTTGCTTGATGTATAACAAGTGGAAGCAAAAACTTGTGTGAACCTCCTCAGCTCCAGA
HS_assemblymutate_np1212 CAGTTGCTTGATGTATAGCAAGTGGAAGCAGAAACTTGTGTGAACCTCCTCAGCTCCAGA
HS_haplotype2 CAGTTGCTTGATGTATAGCAAGTGGAAGCAGAAACTTGTGTGAACCTCCTCAGCTCCAGA
***************** ************ *****************************
HS_haplotype1 GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGGGAAC
HS_assemblymutate_np1212 GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGACAAC
HS_haplotype2 GGCCCTGGCTAGTAGCTCCTGGGATACCACTGAGGATTACACTGGTGGGCTGCAGACAAC
******************************************************* ***
HS_haplotype1 TCAAGGACAAGTTTGAAGAGTTTCCTTCATCACAGCAAGTGTTAAATTCACATTTTTGTC
HS_assemblymutate_np1212 TCAAGGACAAGTTTGAAGAGTTTCCTTCACCACAGCAAGTGTTAAATTCACATTTTTGTC
HS_haplotype2 TCAAGGACAAGTTTGAAGAGTTTCCTTCACCACAGCAAGTGTTAAATTCACATTTTTGTC
***************************** ******************************
HS_haplotype1 TTGTAATACCATGCTCTACTTCACCTGGGCCTCCCCGATATCTGCAGTCTGAGGAGCCAG
HS_assemblymutate_np1212 TTGCAATACCATGCTCTACTTCACCTGGGCCTCCCCGATATCTGCAGTCTGATGAGCCAG
HS_haplotype2 TTGCAATACCATGCTCTACTTCACCTGGGCCTCCCCGATATCTGCAGTCTGATGAGCCAG
*** ************************************************ *******
HS_haplotype1 TTTGTGGTTGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC
HS_assemblymutate_np1212 TTTGTGGTTGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC
HS_haplotype2 TTTGTGGTTGTGTCTTTGACTCCAAAACATGTGAAGGCATGTCATGTGGTGAAATACACC
************************************************************
HS_haplotype1 CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACAGCCTACAAC
HS_assemblymutate_np1212 CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACTGCCTACAAC
HS_haplotype2 CGCTCTAGCTGGGGTTGAGACCTACAAATTAAACAATGAATTGTCCCCACTGCCTACAAC
************************************************** *********
HS_haplotype1 GTACCTTGCCCGACCTTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACAATAGA
HS_assemblymutate_np1212 GTACCTTGTCCGACCTTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACAATAGA
HS_haplotype2 GTACCTTGTCCGACCTTTACCTCAGCTGTATAAGCATGAGTCAGGTATCAACACCATAGA
******** ********************************************* *****
HS_haplotype1 GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTCGATCATTTCTGCC
HS_assemblymutate_np1212 GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTCGATCATTTCTGCC
HS_haplotype2 GATTTATGATATAATAATGCAAAAAATTCAGTATAAATATAGCTGTGGATCATTTCTGCC
********************************************** *************
HS_haplotype1 ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAGCATAAATGCATCCTTC
HS_assemblymutate_np1212 ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAGCATAAATGCATCCTTC
HS_haplotype2 ATCAGTAATCCTTAGGATCTTTTTAAGTATATATCAGAATCTAACATAAATGCATCCTTC
******************************************* ****************
HS_haplotype1 CAAACTAGATCAAGCAGCTAGATCACTTTACTGTGAATTCCAACCTATATGAAGGACAAA
HS_assemblymutate_np1212 CAAACTAGATCAAGCAGCTAGATCACTTTACTGTGAATTCCAACCTATATGAAGGACAAA
HS_haplotype2 CAAACTAGAGCAAGCAGCTAGATCCCTTGACTGTGAATTCCTACCTATATGAAGGACAAA
********* ************** *** ************ ******************
HS_haplotype1 TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT
HS_assemblymutate_np1212 TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT
HS_haplotype2 TTCTAATGGTTTCGCTTCCCTCCCGGGGTCTAAGCCTCCCGTCTTGAGTCATATTCGTAT
************************************************************
HS_haplotype1 GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT
HS_assemblymutate_np1212 GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT
HS_haplotype2 GGGTGTGTGCAATTGTTAGATACCTGACAGGAGGAAACAAAAAAACCAGAAAGGCAGGGT
************************************************************
HS_haplotype1 CAGCCTGGCAGATGGGCTCTGAACAACTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT
HS_assemblymutate_np1212 CAGCCTGGCAGATGGGCTCTGAACAACTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT
HS_haplotype2 CAACCTGGCAGATGGGCTCTGAACATCTGGTTAGCAATTTAGTTGCCATGCCGAGCCAAT
** ********************** **********************************
HS_haplotype1 ACTGTTTCCTGAGGTGTGCCTTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT
HS_assemblymutate_np1212 ACTGTTTCCTGAGGTGTGCCTTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT
HS_haplotype2 ACTGTTTCCTGAGGTCTGCCCTGCTGACACTTGCAATCTATTCAAAAAGATAATTAAGAT
*************** **** ***************************************
HS_haplotype1 AAGAGGAAATCAACCCTCCTCAGGTGTGAGTATAGAGACGCAGCTGAAAAATAATGCTTC
HS_assemblymutate_np1212 AAGAGGAAATCAACCCTCCTCAGGTGTGAGTATAGAGACGCAGCTGAAAAATAATGCTTC
HS_haplotype2 AAGAGGAAATCAACCCTCCTCAGGTGTGTGTATAGAGACGCAGCTGAAAAATAATGCTTC
**************************** *******************************
HS_haplotype1 ACGACGCCTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT
HS_assemblymutate_np1212 ACGACGACTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT
HS_haplotype2 ACGACGACTAACTTAAAGGGTATTATTTTTATTTAAATAATTAGATCATGGTGCTTGTCT
****** *****************************************************
HS_haplotype1 TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC
HS_assemblymutate_np1212 TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC
HS_haplotype2 TCTAGTGGGCTCTTGCCTGTGTCAGGGCCACGATTCCTTCAGGAAGATAAAGTGTTAACC
************************************************************
HS_haplotype1 CTGTAAAGTGAATTTGGAGCAGCAAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT
HS_assemblymutate_np1212 CTGTAAAGTGAATTTGGAGCAGCTAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT
HS_haplotype2 CTGTAAAGTGAATTTGGAGCAGCTAAAGCAATGTGTGGAGTTCTAAGTCACATGATCTGT
*********************** ************************************
HS_haplotype1 TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA
HS_assemblymutate_np1212 TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA
HS_haplotype2 TCAAATAAACAGCGTCATGAAAACTCATAGCCTGTGTGGCCAGGTAGGACCACATGGCCA
************************************************************
HS_haplotype1 TGGTATGGCTGCTGTGTCCCGGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA
HS_assemblymutate_np1212 TGGTATGGCTGCTGTGTCCCGGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA
HS_haplotype2 TGGTATGGCTGCTGTGTCCCCGGGTTTCATGATTTCCCCACCAAGACTTCAACTCCCCCA
******************** ***************************************
HS_haplotype1 GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAACTTTTTAAC
HS_assemblymutate_np1212 GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAACTTTTTAAC
HS_haplotype2 GGACCCCCGCCGTGGTGTATTTCTAGGGAACAGGTCAGAGGGGGACCTCAAATTTTTAAC
*************************************************** ********
HS_haplotype1 GAAGCATGCAGAGAAGAAAGGGGGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT
HS_assemblymutate_np1212 GAAGCATGCAGAGAAGAAAGGGAGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT
HS_haplotype2 GAAGCATGCAGAGAAGAAAGGGAGATTAATTTTTTCCCAAATGTACCCCAGCTAACTTTT
********************** *************************************
HS_haplotype1 TTTTGCCACCTCTGGACTTTAGACAAAAACTCCGAGGGAGTCCAATCCACGTGATGGATT
HS_assemblymutate_np1212 TTTTGCCACCTCTCGACTTTAGACAAAAACTCCGAGGGAGCCCAATCCACGTGATGGATT
HS_haplotype2 TTTTGCCACCTCTCGACTTTAGACAAAAACTCCGAGGGAGCCCAATCCACGTGATGGATT
************* ************************** *******************
HS_haplotype1 GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCACGTACTTCATCAATT
HS_assemblymutate_np1212 GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCAAGTACTTCATCAATA
HS_haplotype2 GGCAGGCCAGGCACAGCAGCTACCAACTAAATATAAAAACACTCAAGTACTTCATCAATA
********************************************* *************
HS_haplotype1 TCTTTGTAACATCACCAAGTATCTTGTTCTCAGTTGCTTCTAAGTGAACTTACAGAATCA
HS_assemblymutate_np1212 TCTTTGTAACATCACCAAGTATCTTGTCCTCAGTTGCTTCTAAGTGAACTTACAGAATCA
HS_haplotype2 TCTTTGTAACATCACCAAGTATCTTGTCCTCAGTTGCTTCTAAGTGAACTTACATAATCA
*************************** ************************** *****
HS_haplotype1 AATTAACTTCAGCCTGGCAACATGTGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA
HS_assemblymutate_np1212 AATTAACTTCAGCCTGGCAACATGTGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA
HS_haplotype2 AATTAACTTCAGCCTGGCAACATATGAATTGCCAACCAAAAGCTGTCTCTCTACTGATCA
*********************** ************************************
HS_haplotype1 TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC
HS_assemblymutate_np1212 TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC
HS_haplotype2 TAAAGACATTTATTCCTGACTGGTGGGGTGCCTTGTGATCTAGTCAAATTTCAGGGTGGC
************************************************************
HS_haplotype1 ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGCAATCCTTCTGGACTTAA
HS_assemblymutate_np1212 ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGCAATCCTTCTGGACTTAA
HS_haplotype2 ACGTGCGGCGTGAGCCAGTGCAGGAGGCCAGACACTTTGGGGAAATCCTTCTGGACTTAA
****************************************** *****************
HS_haplotype1 TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG
HS_assemblymutate_np1212 TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG
HS_haplotype2 TGGAGTGCTGATGAAAACAGAATTTTAATCGGATTGTCACCCTCTCCTCCCAACTTAAAG
************************************************************
HS_haplotype1 TGGAGTTACATGGTGCACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC
HS_assemblymutate_np1212 TGGAGTGACATGGTGAACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC
HS_haplotype2 TGGAGTGACATGGTGAACCCCAGGTGCCGGTACTGTGCAAGAAATGGAGAGAGGCAGTGC
****** ******** ********************************************
HS_haplotype1 TGGGCTCGGGGCCCCTAACTTGTGGTGTAAAATAATTTTTAAAAAAAATCTTCTCCTGCC
HS_assemblymutate_np1212 TGGGCTCGGGGCCCCTAACTTGTGGTGTAAAATAATTTTTAAAAAAAATCTTCTCCTGCC
HS_haplotype2 TGGGCTCGGGGCCTCTACCTTGTGGTGTAAAATAATTTTTAAAAATAATGTTCTCGTGCC
************* *** *************************** *** ***** ****
HS_haplotype1 CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTTATTCGTGGCTGGAC
HS_assemblymutate_np1212 CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTTATTCGTGGCTGGAC
HS_haplotype2 CAGACCCCTGGGACTATTTATGCTGGCACACCCTTGTTTAAGGGTAATTCGTGGCTGGAC
********************************************* **************
HS_haplotype1 AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGCTTGCTTCCCAAA
HS_assemblymutate_np1212 AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGCTTGCTTCCCAAA
HS_haplotype2 AGAGGGTGTGGTATTATTCCAGTAAACACAGGATAGTGATCTGCTTGATTGCTTCCCAAA
*********************************************** ************
HS_haplotype1 TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG
HS_assemblymutate_np1212 TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG
HS_haplotype2 TTAGATGGGGGAGGGAGAGGTGAGCTTCCAGGCGGGGCCTCCCGACTGCAATTTCCCAAG
************************************************************
HS_haplotype1 CAAAAAGAAATTACCCTATCATGGTCTTCAAAACTTCCTCTAGACTCCTTCTGCCTTCCA
HS_assemblymutate_np1212 CAAAAAGAAATTACCCTATCATAGTCCTCAAAACTGCCTCTAGACTACTTCTGCCTTCCA
HS_haplotype2 CAAAAAGAAATTACCCTATCATAGTCCTCAAAACTGCCTCTAGACTACTTCTGCCTTCCA
********************** *** ******** ********** *************
HS_haplotype1 TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA
HS_assemblymutate_np1212 TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA
HS_haplotype2 TAAAATCACCAGCTGTGTGAAGCCCAGGAGACTGTGCTGTCTTGAATATTGAATTTGTTA
************************************************************
HS_haplotype1 GGGACCAGATACCCTACTCGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC
HS_assemblymutate_np1212 GGGACCAGCTACCCTACTAGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC
HS_haplotype2 GGGACCAGCTACCCTACTAGCAACCTTGGGATCCTCCTCCCTGGCGCCCGGTCAGTGAGC
******** ********* *****************************************
HS_haplotype1 TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG
HS_assemblymutate_np1212 TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG
HS_haplotype2 TGCACATTTTTATATAAAAAGAAATCTTGCATTCATGATTCTACTTCCTCAGACCTGAGG
************************************************************
HS_haplotype1 CCACCCGTGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT
HS_assemblymutate_np1212 CCACCCGGGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT
HS_haplotype2 CCACCCGGGGAGGAGAGCTTGAATACCCTAAGATACCATTTTCCTGCCCAGGGTTGGTTT
******* ****************************************************
HS_haplotype1 TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA
HS_assemblymutate_np1212 TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA
HS_haplotype2 TTTTACCACTCCTGTAGTCACACTGCATTATTTGTTCACACATTTTGGGCAGATATTATA
************************************************************
HS_haplotype1 GATTGGACTACCTAAGTCATCAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC
HS_assemblymutate_np1212 GATTGGACTACCTAAGTCATCAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC
HS_haplotype2 GATTGGACTACCTAAGTGAACAAAAATTTCCCACTCACAGTATTTAATTTTTAAATGGCC
***************** * ****************************************
HS_haplotype1 TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTGTATGCAAACCCCGCCGGAAGTTGACT
HS_assemblymutate_np1212 TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTCTATGCAAACCCCGCCGGAAGTTGACT
HS_haplotype2 TTCCAGCCTGGCTGTAACAGCTACTCTAGTGCTCTATGCAAACCCCGCCGGAAGTTGACT
********************************* **************************
HS_haplotype1 GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT
HS_assemblymutate_np1212 GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT
HS_haplotype2 GCACTGCACACAATCCCTACCTAAGAAACTTTAGGTGGTTGTTACTGTGACATGGGGAAT
************************************************************
HS_haplotype1 GATCACAAAATATATTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG
HS_assemblymutate_np1212 GATCACAAAATATATTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG
HS_haplotype2 GATTACAAAATATATTATGACAGCCCAGTCCTCTGATTTTTTTGGGAACGTCCAGAGAGG
*** ********************************************************
HS_haplotype1 CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT
HS_assemblymutate_np1212 CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT
HS_haplotype2 CAGAGCTTCTGACCGCGCCATCAACTTTTAAGGGGGCACAAAATGGCTTCCTTTCTGTGT
************************************************************
HS_haplotype1 TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAAATTCTTAATAAGGTTTGACT
HS_assemblymutate_np1212 TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAAATTCTTAATAAGGTTTGACT
HS_haplotype2 TCTACAGTTTTGGCCAGGCTCCCGGCGTGAGACACTTCAAATTCTTAATAAGGTTTGACT
************************************************************
HS_haplotype1 GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC
HS_assemblymutate_np1212 GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC
HS_haplotype2 GTAGTGAAAAACTGATGAGACCATAGATTATTCCATTTATTATGTGGGTTTTAGTCCAGC
************************************************************
HS_haplotype1 CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT
HS_assemblymutate_np1212 CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT
HS_haplotype2 CCGGGAGCTGGAAGACTCGGGCATGGAAGGGATTCAGTCTCTGAATTCTAGCAGTGGCCT
************************************************************
HS_haplotype1 CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGGT
HS_assemblymutate_np1212 CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGGT
HS_haplotype2 CCCAAACAAAAAATTGGCCACCGCACCACTGATATAATTTTAATCCACTACTGCGGAGCT
********************************************************** *
HS_haplotype1 GGGTGAGGCCTTGTAGCTCTACACTTCTTTGTGTGACCAGGCTGCCGGGAGAGCTCACTT
HS_assemblymutate_np1212 GGGTGAGGCCTTGTAGCTCTACACTTCTTTGTGTGACCAGGCTGCCGGGAGAGCTCACTT
HS_haplotype2 GGGTGAGGCCTTGTAGCTCTACAGTTCTATGTGTGACCAGGCTGCCGGGAGAGCTCACTT
*********************** **** *******************************
HS_haplotype1 CCATCAACATTTAGTAGGGGGGTTTACTGTGTAATACTCTTGACAATGAAATTGAAGGAT
HS_assemblymutate_np1212 CCATCAACATTTAGTAGGGGGGTTTACTGTGTAATACTCTTGACAATGAAATTGAAGGAT
HS_haplotype2 CCATCAACATTTAGTAGGGGGGTTTACTGTGTAATACTCCTGACAATGAAATTGAAGGAT
*************************************** ********************
HS_haplotype1 TTGTTTTAATGGAGCTCAAATAGACAGGGGTTCTGAAAGTTGCACTGATGCCGGAAAATG
HS_assemblymutate_np1212 TTGTTTTAATGGAGCTCAAATAGACAGGGGTTCTGAAAGTTGCACTGATGCCGGAAAATG
HS_haplotype2 TTGTTTTAATGGAGCTCAAATAGACAGGGGTTCTGAAAGTTGCACTGATGCCGGAAAATG
************************************************************
HS_haplotype1 AAGCAAAATTAGCTGTGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGG
HS_assemblymutate_np1212 AAGCAAAATTAGCTGTGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGG
HS_haplotype2 AAGCAAAATTAGCTGTGACCAGTGAAAGCAGCAAACCTTTGGCCTAGATAACCTGGATGC
***********************************************************
HS_haplotype1 TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCA
HS_assemblymutate_np1212 TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCA
HS_haplotype2 TAAATCTAGGAGATTTGTCACCTGCCTCCTCAGCTTGGAAATGCCCAGTTCAATAAACCT
***********************************************************
HS_haplotype1 GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC
HS_assemblymutate_np1212 GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC
HS_haplotype2 GGCCCAGGAGAGACTCATTTGTTACTTTGGACAGCCTGTTGGCAGGAGAAGGTTTAAACC
************************************************************
HS_haplotype1 TGCTAATCTATCCAACATCATACAAAAGCACATATTAACTGACCTTCATCGAGATTCAAT
HS_assemblymutate_np1212 TGCTAATCTATCCAACATCATACAAAAGCACATATTAACTGACCTTCATCGAGATTCAAT
HS_haplotype2 TGCTAATCTATCCAATATCATACAAAAGCACATATTAACTGACCTTTATCGAGATTCAAT
*************** ****************************** *************
HS_haplotype1 AGCTATTAAACCCCCACAGAAGAAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT
HS_assemblymutate_np1212 AGCTATTAAACCCCCACAGAAGAAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT
HS_haplotype2 AGCCATTAAACCCCCACAAAAGTAAGGTTTGTGTAAGGTGGGATACTAGGGATGGTGGCT
*** ************** *** *************************************
HS_haplotype1 GGGAAAGGGGTGGCCAGTGAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC
HS_assemblymutate_np1212 GGGAAAGGGGTGGCCAGTGAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC
HS_haplotype2 GGGAAAGGGGTGGCCAGTTAAAAATACATACTAAATTGCTTCTCCCGCCAACATTTGAGC
****************** *****************************************
HS_haplotype1 TAGGACTCTGCTATAGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA
HS_assemblymutate_np1212 TAGGACTCTGCTTTTGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA
HS_haplotype2 TAGGACTCTGCTTTTGTGCATAGTATATCGTTTGGGACTGGTCCAGAATAGTCTCCTGGA
************ * *********************************************
HS_haplotype1 GATATTAAATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGCG
HS_assemblymutate_np1212 GATATTACATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGCG
HS_haplotype2 GATATTACATAGTTACTCAGAATGTAATCCACTGCTTCTTCCTGGGCTCCAACCCAGGCG
******* ****************************************************
HS_haplotype1 GATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGACATACTC
HS_assemblymutate_np1212 AATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGAGATACTC
HS_haplotype2 AATAACAGCACCCTAGACCCATCTGAGGGAAGAATCTACTTAACAATATTTGAGATACTC
**************************************************** ******
HS_haplotype1 TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGAGTATAAGAAC
HS_assemblymutate_np1212 TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGAGTATAAGAAC
HS_haplotype2 TGAGCCCAGTCTGGGCAAGAAATGCATAAAAAAGCAATCACTTCTCCTGAGGATAAGAAC
*************************************************** ********
HS_haplotype1 TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTAGCTTATCTGCAGCGTACATTCATTT
HS_assemblymutate_np1212 TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTAGCTTATCTGCAGCGTACATTCATTT
HS_haplotype2 TTATGACAAATCTCACTCAGGGTTCAAAGAAGGTCGCTTATCTGCAGCGTACAGTCATTT
********************************** ****************** ******
HS_haplotype1 GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG
HS_assemblymutate_np1212 GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG
HS_haplotype2 GTGATTGCTGGGAGGCCAAAGTCTCTTGAGCAGGGATTTTTCTCCCACCAAAGCCACCTG
************************************************************
HS_haplotype1 CTGAGAATAAAGTCGTGCCATTCCATCAAACTTTTCACTTGTGCGACCCATTTTCCCTCC
HS_assemblymutate_np1212 CTGAGAATAAAGTCGTGCCATTCCATCAAACTTTTCACTTGTGCGACCCATTTTCCCTCC
HS_haplotype2 CTGAGAATAAAGCCGTGCCATTCCATCAAACTTTTCACTTGTTCGACCCATTTTCCCTCC
************ ***************************** *****************
HS_haplotype1 CCTGGGAGGATAAAAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT
HS_assemblymutate_np1212 CCTGGGAGGATAAAAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT
HS_haplotype2 CCTGGGAGGATAAAAAAATTAAAATACCAAGTAGCCAAGTTTTTAACATTGTAATCCATT
************************************************************
HS_haplotype1 CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT
HS_assemblymutate_np1212 CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT
HS_haplotype2 CCGTCTTTGTGTCCTGCATGATGAACTATGAGAACTGTATTTAAGTGTAGTAGGACATTT
************************************************************
HS_haplotype1 CTTCTACCTGTGATACTTTCCTGCATCCTCCCGATCACCTATCAACTGGAGCCAGTGTCC
HS_assemblymutate_np1212 CTTCTACCTGTGATACTTTCCTGCATCCTCCCGATCACCTATCAACTGGAGCCAGTGTCC
HS_haplotype2 CTTCTACCTGTTATACTTTCCTACATCCTCCCGATCACCTATCAACTGGCGCCAGTGTCC
*********** ********** ************************** **********
HS_haplotype1 CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGCCAGTGATGGATTTGAGCGC
HS_assemblymutate_np1212 CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGCCAGTGATGGATTTGAGCGC
HS_haplotype2 CATGCCTCCGGATTCTCAAACAAACTGGAGCTCTGACACGGCAGTGATGGATTTGAGCGC
**************************************** *******************
HS_haplotype1 AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCCCCTGGATCTCCCGACCTGGTTT
HS_assemblymutate_np1212 AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCCCCTGGATCTCCCGACCTGGTTT
HS_haplotype2 AGTGTTGCCACATACCTCTAGAAAAAGAGGTTTATTCACCTGGATCTCCCGACCTGGTTT
************************************* **********************
HS_haplotype1 CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATCAATTATCA
HS_assemblymutate_np1212 CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATCAATTATCA
HS_haplotype2 CTTGATTATCTAAATACTAGGTGCCTGTATATAATCATCTGAAAGGGGTATTAATTATCA
*************************************************** ********
HS_haplotype1 TTTTTGACAAGTTCTCTTTAGAGGACAACATGATACAGGCAAAAAAAGTGTAAACAAAAC
HS_assemblymutate_np1212 TTTTTGACAAGTTCTCTTTAGAGGACAACATGATACAGGCAAAAAAAGTGTAAACAAAAC
HS_haplotype2 TTTTTGACAAGTGCTCTGTAGAGGACAAGATGATACATGCAAAAAAAGTGTAAACAAAAC
************ **** ********** ******** **********************
HS_haplotype1 AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT
HS_assemblymutate_np1212 AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT
HS_haplotype2 AAGATCATTATTTATTTACAGTGAGCCCTGTGGGTGACAAAAACATGCTCCCTCAGCCTT
************************************************************
HS_haplotype1 TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCCTTTAGA
HS_assemblymutate_np1212 TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCATTTAGA
HS_haplotype2 TGAAACGAGTACCCTAATGAAATGTTGCATGTTTCAGAAGCTGAAGCCCTCCCATTTAGA
***************************************************** ******
HS_haplotype1 AATTAGATGAGCTGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC
HS_assemblymutate_np1212 AATTAGATGAGATGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC
HS_haplotype2 AATTAGATGAGATGGTCTTCTCCTTGGTGTGCAGTGAGGTTTGTGAGGAAGTAACCACGC
*********** ************************************************
HS_haplotype1 AGGGCTCTGACCTTTTACAAGACATGAAGGGTGGTGCCCCTGATGGGTCTTTCCAGATCA
HS_assemblymutate_np1212 AGGGCTCTGACCTTTTACAAGACATGAAGGGAGGTGCCCCGGATGGGTCTTTCCAGATCA
HS_haplotype2 AGGGCTCTGACCTTTTACAAGACATGAAGGGAGGTGCCCCGGATGGGTCTTTCCAGATCA
******************************* ******** *******************
HS_haplotype1 AGAGACCATCCAGGAGTTTTTTTAGCAGCAAGGCGATACATCACATAATATCAGTGCAAT
HS_assemblymutate_np1212 AGAGACCATCCAGGAGTTTTTTTAGCAGCAAGGCGATACATCACATAATATCAGTGCAAT
HS_haplotype2 AGAGACCATCCAGGAGTTTTTTTAGCAGCAAGGCGATACATCACATAATATCAGTGCAAT
************************************************************
HS_haplotype1 TCTCCTGCCATCATAGTAAAGAATCAAAAAGAGTGCCCCTTGAAAGAAGCACGCCCGTTC
HS_assemblymutate_np1212 TCTCCTCCCATCATAGTAAAGAATCAAAAAAAGTGCCCCTTGAAAGAAGCACGCCCGTTC
HS_haplotype2 TCTCCTCCCATCATAGTAAAGAATCAAAAAAAGTGCCCCTTGAAAGAAGCACGCCCGTTC
****** *********************** *****************************
HS_haplotype1 ACCGTAAGGGGAGCCAACTTACATACTGTCAAGTTTGGCAGGATAGTAAGGACAAAGACT
HS_assemblymutate_np1212 ACCGTAAGGGGAGCCAACTTAGATACTGTCAAGTTTGGCAGGATAGTAAGGACAAAGACT
HS_haplotype2 ACCGTAAGGGGAGCCAACTTAGATACTGTCAAGTTTGGCAGGATAGTAAGGTCAAAGACT
********************* ***************************** ********
HS_haplotype1 GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGGGAAGTGC
HS_assemblymutate_np1212 GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGGGAAGTGC
HS_haplotype2 GAGTGCTGAGCTTAGGTTAGTTTCTGCTTATCTATAAGAGTGATGAGGTGGGAGAAGTGC
**************************************************** *******
HS_haplotype1 CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGGTGAATTTTGAGAGTTTGC
HS_assemblymutate_np1212 CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGGTGAATTTTGAGAGTTTGC
HS_haplotype2 CACCGAAGGGGATGCCCAATAACAATCTCCCCCCTCGGGTGGTGAATTTTGAGAGTTTGC
************************************************************
HS_haplotype1 TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA
HS_assemblymutate_np1212 TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA
HS_haplotype2 TTACTCGGGGCGGGTTACATGCCCTGAGGGGTTGGCAGCCCCCTTAGTTAAATGGAGAAA
************************************************************
HS_haplotype1 GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT
HS_assemblymutate_np1212 GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT
HS_haplotype2 GGTTTTATAGCCTGTAGCAAAGTCCCTCATCTCCTGGAATTGGCAGATTTACCCAGAACT
************************************************************
HS_haplotype1 TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT
HS_assemblymutate_np1212 TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT
HS_haplotype2 TCCATTAGAAATTAATGCATGCCCTAGAATAGGTTTTGACTGATTTTAAACTGTTTTCCT
************************************************************
HS_haplotype1 TTAAAAAGGGAGACCTCCTACTAAATAATGAAAGAAAAACACTGCAGTGATGAGGGCTGG
HS_assemblymutate_np1212 TTAAAAAGGGAGACCTCCTACTAAATAATGAAAGAAAAACACTGCAGTGATGAGGGCTGG
HS_haplotype2 TTAAAAAGGGAGACCTCCTACTAAATAATGAAAGAAAAACACTGCAGTGATGAGGGCTGG
************************************************************
HS_haplotype1 TTTAAAAGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT
HS_assemblymutate_np1212 TTTAAATGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT
HS_haplotype2 TTTAAATGTTTGGCAGAGTGAGTGACCGTCAGAGGGAAACCTCCTGTAGGCTGAGTTACT
****** *****************************************************
HS_haplotype1 GAAGCCAAACCAGGTCAGCGCTACTATTTAATATAATGGCATGGGGACCCTTTTGCTGTT
HS_assemblymutate_np1212 GAAGCCAAACCAGGTCAGCGCTACTATTTAATATAATGGCATGGGGACCCTTTTGCTGTT
HS_haplotype2 GAAGCCAAACCAGGTCAGCGCTACTTTTTAATATAATGGCATGGGGACCCTTTTGCTGTT
************************* **********************************
HS_haplotype1 CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAACAAAGTA
HS_assemblymutate_np1212 CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAACAAAGTA
HS_haplotype2 CAATCTACTGGCCTTCAAGGGGTTTTCAATTAAGATTAAAATTTCACTGGAAAGAAAGTA
***************************************************** ******
HS_haplotype1 GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT
HS_assemblymutate_np1212 GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT
HS_haplotype2 GACTCCAGCTGGTCAGGGACTGCATCTCTAAGTAATCAATCCTGAATATCACCTGGGGGT
************************************************************
HS_haplotype1 TCGAAATCAGCCAGACATCCTAAGATTACAGACCGGGAGGCAGCTTATTTCTGTACAAGA
HS_assemblymutate_np1212 TCGAAATCAGTCAGACATCCTAAGATTACGGACCGGGAGGCAGCTTATTTCTGTACAAGA
HS_haplotype2 TCGAAATCAGTCAGACATCCTAAGATTACGGACCGGGAGGCAGCTTATTTCTGTACAAGA
********** ****************** ******************************
HS_haplotype1 TCTTGGCTAACTAGAAGGGGAAGACCTCGCGTGAGATAAGCCTGGGCTCAAAGGAAGTGC
HS_assemblymutate_np1212 TCTTGGCTAACTAGAAGGGGAAGACCTCGCTTGAGATAAGCCTGGGCTCAAAGGAAGGGC
HS_haplotype2 TCTTGGCTAACTAGAAGGGGAAGACCTCGCTTGAGATAAGCCTGGGCTCAAAGGAAGGGC
****************************** ************************** **
HS_haplotype1 AGTTTGAATAAGGGATTTTATTTTTTCATAAAAAGAAAACAGCCAATTTTGTTAATGAAG
HS_assemblymutate_np1212 AGTTTGAATAAGGGATTTTATTTTTTCATAAAAAGAAAACAGCCAATTTTGTTAATGAAG
HS_haplotype2 AGTTTGAATAAGGGATTTTATTTTTTCATAAAATGAAAACAGCCAATTTTGTTAATGAAG
********************************* **************************
HS_haplotype1 GGGAGGCACGAGGGATACCAATGAGTTTCTTCGGCGCGGACATTCTACTTGTGTATTTAC
HS_assemblymutate_np1212 GGGAGGCACGAGGGATACCAATGAGTTTCTTCGGCGCGGACATTCTACTTGTGTATTTAC
HS_haplotype2 GGGAGGGCCGAGGGAAACCACTGAGTTGCTTCGGCGCGGACATTCTACTCTTGTATTTAC
****** ******* **** ****** ********************* *********
HS_haplotype1 GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCAAGGCTCGGTGGTTCCAC
HS_assemblymutate_np1212 GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCAAGGCTCGGTGGTTCCAC
HS_haplotype2 GGGTGTAAAACCTGACCAGCCCACCATCTGTGCTGAGCCGCCCAGGCTCGGTGGTTCCAC
****************************************** *****************
HS_haplotype1 CCTGGGAGCTAAAATTAAGGATGGTGGATCCCATTGGGTAATTCCTGCCTGAGTTTTAAA
HS_assemblymutate_np1212 CCTGGGAGCTAAAATTAAGGATGGTGGATCCCATTGGGTAATTCCTGCCTGAGTTTTAAA
HS_haplotype2 CCTGGGAGCTAAAATTAAGGATGGTGGATCACATTGGGTAATTCCTGCCTGAGTTTTAAA
****************************** *****************************
HS_haplotype1 ATAAGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA
HS_assemblymutate_np1212 ATAAGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA
HS_haplotype2 ATACGGAAACCAATTCCACCCAGAGTAGCATATAGTAGCCCACATAAGTGCACCAGAAAA
*** ********************************************************
HS_haplotype1 GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA
HS_assemblymutate_np1212 GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA
HS_haplotype2 GCGAGGAAGCAAATGGAATTGAGCCTTCCAAACTCCTTTACCAGTCAAAACAAACAAAAA
************************************************************
HS_haplotype1 GAGGCAGCAGGCCCCTGCCTTCCTCCTATATAAAACAGATTCTGAGAGAAAGCAAATGAT
HS_assemblymutate_np1212 GAGGCAGCAGGCCCCTGCCTTCCTCCTAGATAAAACAGATTCTGAGAGAAAGCAAATGAT
HS_haplotype2 GAGGCAGCAGGCCCCTGCCTTCCTCCTAGATAAAACAGATTCTGAGAGAAAGCAAATGAT
**************************** *******************************
HS_haplotype1 TACAGCATTTTATAAGGACAAGGCTGGCAATTACATATGTATTTCTGGGTGGGATAGAGA
HS_assemblymutate_np1212 TACAGCATTTTATAAGGACAAGGCTGGCAATTACATATGTATTTCTGGGTGGGATAGAGA
HS_haplotype2 TACAGCATTTTAAAAGGACAAGGCTGGCAATCACATATGTATTTCTGGGTGGCATAGAGA
************ ****************** ******************** *******
HS_haplotype1 CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGAAAATTAGTGAGCCATGCCTT
HS_assemblymutate_np1212 CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGAAAATTAGTGAGCCATGCCTT
HS_haplotype2 CAACACACATCTCTTTTTATTTTCTTTGGACAGCAGTGGCAAATTAGTGAGCCATGCCTT
*************************************** ********************
HS_haplotype1 TTATTTAGAGCACAAACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG
HS_assemblymutate_np1212 TTATTTAGAGCACAAACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG
HS_haplotype2 TTATTTAGAGCACACACTTGTGTCCCTGGTCCCTTCACTGTGCAACATGGATTAGATCAG
************** *********************************************
HS_haplotype1 CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA
HS_assemblymutate_np1212 CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA
HS_haplotype2 CCCAGGAAACAATCGAGAAATATATATCTACTGTCCCACTCTTCACACCGTTTCTACAAA
************************************************************
HS_haplotype1 GTTCAGCTACTAAATTCTTCCCCTTCATAGTTATTTGAGATGTTTAAAAACACTCCTGTA
HS_assemblymutate_np1212 GTTCAGCTACTAAATTCTTCCCCTTCATATTTATTTGAGATGATTAAAAACACTCCTGTA
HS_haplotype2 GTTCAGCTACTAAATTCTTCCCCTTCATATTTATTTGAGATGATTAAAAACACTCCTGTA
***************************** ************ *****************
HS_haplotype1 TATATTAATGCTGTTTATTTTAGCTGGGCGAAGTCACAATTATTTTGTATGTTACTCGGA
HS_assemblymutate_np1212 TATATTAATGCTGTTTATTTTAGCTGGGCGAAGTCACAATTATTTTGTATGTTACTCGGA
HS_haplotype2 TATATTAATGCTGTTTATTTTAGCTGGGCGAACTCACAATTATTTTGTATGTTACTCGGA
******************************** ***************************
HS_haplotype1 TCTTCATTTCAATAAAATACAATTTGAGATGGAGAAAGCAAGTCATCCAGCCCCCGAGTT
HS_assemblymutate_np1212 TCTTCATTTCAATAAAATACAATTTGAGATGGAGAAAGCAAGTCATCCAGCCCCCGAGTT
HS_haplotype2 TCTTCATTTCAATAAAATACAATTTGAGATGGAGAAAGCAAGTCATCCAGCCCCCGAGTT
************************************************************
HS_haplotype1 TTCTACCTAATATTATCTGAACACAAGTTGCAGAGGGAAATTGGCTCAGAAGGCCCATGT
HS_assemblymutate_np1212 TTCTACCTAATATTATCTGAACACAAGTTGCAGCGGGAAATTGGCTCAGAAGTCCCATGT
HS_haplotype2 TTCTGCCTAATATTATCTGAACACAAGTTGCAGCGGGAAATTGGCTCAGAAGTCCCATGT
**** **************************** ****************** *******
HS_haplotype1 GACCCCGGCCTGGTTCTTCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATAGTCTTA
HS_assemblymutate_np1212 GACCCCGGCCAGGTTCATCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATGGTCTTA
HS_haplotype2 GACCCCGGCCAGGTTCATCACCCTACTGGGCCAAGTCAAAATTTTTTAGCTATGGTCTTA
********** ***** ************************************ ******
HS_haplotype1 TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA
HS_assemblymutate_np1212 TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA
HS_haplotype2 TTTTAGCCATTCTCAAATAGAGAATAAAATTACTGGGTTGTTTAAAACTTCTGAAACATA
************************************************************
HS_haplotype1 CATGCATGGAAGCCCTTTCTAATGGGAGGTGTTAGCTGAGGGGTCCTCAACCCGGGTCGA
HS_assemblymutate_np1212 CATGCATGGAAGCCCTTTCTAATGGGAGGTGTTAGCTGAGGGGTCCTCAACCCGGGTCGA
HS_haplotype2 CATGCATGGAAGCCCTTTCCAATGGGAGGTGTTAGCTGAGGGGTCCTCAACGCGGGTCGA
******************* ******************************* ********
HS_haplotype1 CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT
HS_assemblymutate_np1212 CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT
HS_haplotype2 CAAATGTCATCTCCGTCTCGCTGAGGCTGACTCCAGAGGCTGCAATTTGGGTTTCCTTAT
************************************************************
HS_haplotype1 CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA
HS_assemblymutate_np1212 CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA
HS_haplotype2 CCCATCAGGCAAAACCTCCCAGCCTGTATAAGAGAAAAATATTTCACAAATAAAAGCCCA
************************************************************
HS_haplotype1 AAGGGGACGCCAGAATCCCACAAGATTCAACCGAGGTATTTGAGCCAGTTGAGGCTCACC
HS_assemblymutate_np1212 AAGGGGACGCCAGAATCCCACAAGATTCAACCAAGGTATTTGAGCCAGTTGAGGCTCACC
HS_haplotype2 AAGGGGACGCCAGAATCCCACAAGATTCAACCAAGGTATTTGAGCCAGTTGAGGCTCACC
******************************** ***************************
HS_haplotype1 AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTATAATCAATGAC
HS_assemblymutate_np1212 AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTTTAATCAATGAC
HS_haplotype2 AAAACAATGAAGTCTGCGAGCTATTGTGACTTGGCATGAACTTTTATTTTAATCAATGAC
************************************************ ***********
HS_haplotype1 CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCCAGA
HS_assemblymutate_np1212 CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCTAGA
HS_haplotype2 CTATGATGTGGTAGACACTAGGGTTAGGGAGACCAAGGGGAAGATTCCAGTCACGCTAGA
******************************************************** ***
HS_haplotype1 ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTAGAC
HS_assemblymutate_np1212 ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTAGAC
HS_haplotype2 ATGGAATTTTGATTGTTGATCCATCTCAGATAAAGACTGGTGGGGATGCTGGGATTACAC
********************************************************* **
HS_haplotype1 TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTATATATAGTAATA
HS_assemblymutate_np1212 TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTATATATAGTAATA
HS_haplotype2 TTCAAGGCTGGCCACTGACTCATGCACTCCCGGGCCTATAACTTTGTACATATAGTAATA
************************************************ ***********
HS_haplotype1 CACTAACTATAGGAAGGAGCCGGAGCCAATGCTTCTTTAACGGAATGCAGCCTAGGAACT
HS_assemblymutate_np1212 CACTAACTATAGGAAGGAGCCGGAGCCAATGCTTCTTTAACGGAATGCAGCCTAGGAACT
HS_haplotype2 CACTAACTATCGGAAGGAGCCGGAGCCACTGCTTCTTTAACGGAATGCAGCCTAGGAACT
********** ***************** *******************************
HS_haplotype1 TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG
HS_assemblymutate_np1212 TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG
HS_haplotype2 TCAATGTGAGGCGTGATTCCTGGGGTGTGGGATGGCAGCAGTGGTCTCCTGATTACAGAG
************************************************************
HS_haplotype1 GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC
HS_assemblymutate_np1212 GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC
HS_haplotype2 GACCTCTCTGAGCCACTGCCAGAAGGAAATATAGTGGGCAGCACGCCACATTAAATACAC
************************************************************
HS_haplotype1 CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCCA
HS_assemblymutate_np1212 CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCAA
HS_haplotype2 CATCCTCTTGGAGGTTATTTATTTCCTGGCTTGCATGAACTGGAGACTCGGCTGGCTCAA
********************************************************** *
HS_haplotype1 CAGAATTTGATGTAACTATAATTAATTACCCAAACGCTTTGTAAATGAGCCGGCCAAGAT
HS_assemblymutate_np1212 CAGAATTTGATGTAACTATAATTAATTACCCAAACGCTTTGTAAATGAGCCGGCCAAGAT
HS_haplotype2 CAGAATTTGATGTAACTATAATTAATTACCCAAACGCTTTGTAAATGAGCCGGCCAAGAT
************************************************************
HS_haplotype1 GATGTCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT
HS_assemblymutate_np1212 GATGTCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT
HS_haplotype2 GATGTCCTGCTAGACAGGAGGCTGTTGTGGCTCACAATGAGAAGGGCCAAGATGGAACAT
************************************************************
HS_haplotype1 GTGCAAAGAAGCGCAGCAGGGTGATCCTTCTTCCCTGCGACCCTGCCGGCCCTCCATCTT
HS_assemblymutate_np1212 GTGCAAAGAAGCGGAGCAGGGTGATCCTTCTTCCCTGCGTCCCTGCCGGCCCTCCATCTT
HS_haplotype2 GTGCAAAGAAGCGGAGCAGGGTGATCCTTCTTCCCTGCGTCCCTGCCGGCCCTCCATCTT
************* ************************* ********************
HS_haplotype1 TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA
HS_assemblymutate_np1212 TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA
HS_haplotype2 TTTGTATTTATATGGAGGGCTAGAAAACATGGGACTGTTCAAAACTCAGCAAACAGACCA
************************************************************
HS_haplotype1 TGTATTTTTAAGTGGAACTCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCCCAGA
HS_assemblymutate_np1212 TGTATTTTTAAGTGGAACTCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCCCAGA
HS_haplotype2 TGAATTTTTAAGTGGAACTCCTTAATTTCAATCTAACAGGTTGCAGCGACCTCCCCCAGA
** *********************************************************
HS_haplotype1 ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG
HS_assemblymutate_np1212 ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG
HS_haplotype2 ATTGTTTTTTGGAGGTCTCTGAGTGTTTGATGTTTCCACCAAAGATTCTCAGAACCCTGG
************************************************************
HS_haplotype1 CCCTTCTCAAGGGACAGTCTTTCTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG
HS_assemblymutate_np1212 CCCTTCTCAAGGGACAGTCTTTCTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG
HS_haplotype2 CCCTTCTCAAGGGACAGTTTTTGTCTGGGCAACCTAGTAGTTAAAAAGGAACTGGGCTGG
****************** *** *************************************
HS_haplotype1 CTCCTCATCTTGTAGAAAATGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT
HS_assemblymutate_np1212 CTCCTCATCTTGTAGAAAATGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT
HS_haplotype2 CTCCTCATCTTGTAGAAATTGTTCATCCACCAAATGGGATTATTGATACACAAGAGCAAT
****************** *****************************************
HS_haplotype1 CAAGGCAGGAGAAAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT
HS_assemblymutate_np1212 CAAGGCAGGAGACAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT
HS_haplotype2 CAAGGCAGGAGACAAAATGATTACTCAGCCATGAATTCCAAAGAGAAGGATGCTAAGTCT
************ ***********************************************
HS_haplotype1 TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAGGCTCG
HS_assemblymutate_np1212 TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAGGCTCG
HS_haplotype2 TTTCCACCGACTGTGAAAAAGATATTGAGCCCAGAACAAAATAGCAATATCGGAGGCTCG
************************************************************
HS_haplotype1 GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATTTCTAGACGGGGCGTGCTGAGGC
HS_assemblymutate_np1212 GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATTTCTAGACGGGGCGTGCTGAGGC
HS_haplotype2 GAAGAATCTGGGGACAATGGAGCATATGAGACCTTATTTCTAGTCGGGGCGTGCTGAGGC
******************************************* ****************
HS_haplotype1 ACAATTTCTACTAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCGT
HS_assemblymutate_np1212 ACAATTTCTACTAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCGT
HS_haplotype2 ACAATTTCTAATAGGACTGATCCTTAAAAATAAATTTCCAATCATCCTTCTACGGCGCGT
********** *************************************************
HS_haplotype1 TGCACAAGATGGCTCTTGGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT
HS_assemblymutate_np1212 TGCACAAGATGGCTCTTGGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT
HS_haplotype2 TGCACAAGATGGCTCTTGGGCTCAGGCGGCTTCCCTGCAGTATTTCCCACAGTGACCAGT
************************************************************
HS_haplotype1 ATAGAGACCTGAGGCCCGGCCTTTTTAGTATCAGCCCCTGGCTATAGAATGTATTGGCTT
HS_assemblymutate_np1212 ATAGAGACCTGAGGCCCGGCCTTTTTAGTATCAGCCCCTGGCTATAGAATGTATTGGCTT
HS_haplotype2 ATAGAGACCTGAGGCCCGGCCTTTTTAGCATCAGCCCCTGGCTATAGAATGTCTTGGCTT
**************************** *********************** *******
HS_haplotype1 CCTATGATTACCTTCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT
HS_assemblymutate_np1212 CCTATGATTACCTTCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT
HS_haplotype2 CCAATGATTACCTGCCTGGGCGGGAGGGTGGATCTTTAAATGAAACAACCAAAGAGTTGT
** ********** **********************************************
HS_haplotype1 AAAAACTCCTGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG
HS_assemblymutate_np1212 AAAAACTCCTGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG
HS_haplotype2 AAAAACTCCGGAAATTGTAAGAAGGTGGGGACACTCTTCCGCTCTCTTTTGATAAGCTAG
********* **************************************************
HS_haplotype1 GACTTAACAGTAGTGGTCATCACCTCCGGGATGGGATGTTAAATGCTTGGCTCACCTCTT
HS_assemblymutate_np1212 GACTTAACAGTAGTGGTCATCACCTCCGGGATGGGATGTTAAATGCTTGGCTCACCTCTT
HS_haplotype2 GGCTTAACAGTAGTGGTCATCACCTCCCGGATGGGATGTTAAATGCTTGGCTCAGCTCTT
* ************************* ************************** *****
HS_haplotype1 CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTACAGGCGGCCAAAAA
HS_assemblymutate_np1212 CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTACAGGCGGCCAAAAA
HS_haplotype2 CATGGATCACTGATCACACAGTGAGTAAATTGTCATGATGGGATTATAGGCGGCCAAAAA
********************************************** *************
HS_haplotype1 GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG
HS_assemblymutate_np1212 GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG
HS_haplotype2 GACTCTCATGCCAAAATCCCAGGGGTGAGACTGGTCACACAATGGAGTGGGCACGCCAAG
************************************************************
HS_haplotype1 ACATTTATATTTTGAACAATCAAAAATCATTCTGCTCTCCAATAACTCTATAACATGGGA
HS_assemblymutate_np1212 ACATTTATATTTTGAACAATCAAAAATCATTCTGCTCTCCAATAACTCTATAACATGGGA
HS_haplotype2 ACATTTATATTTTGAACAATCAAATATCATTCTGCTCTCCAATAACTCTATAACATGGGA
************************ ***********************************
HS_haplotype1 GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA
HS_assemblymutate_np1212 GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA
HS_haplotype2 GGAACTCAACAAAAGATTTGGGTAGAAAGAGGCCCACTGATAATTTGACAGGGGCACAGA
************************************************************
HS_haplotype1 TTCAGAACATAGAGTACTGTGCGCGAGACAGAGTTGGCCAAGTAGGTGCCAGGCTGGAAA
HS_assemblymutate_np1212 TTCAGAACATAGAGTACTGTGCGCGAGACAGAGTTGGCCAAGTAGGTGCCAGGCTGGAAA
HS_haplotype2 TTCAGAACATAGAGTACTGTGCGCGAGACAGAGTTGCCCAAGTAGGTGCCAGGCTGGAAA
************************************ ***********************
HS_haplotype1 ATAATGTACCTCTGGGGTATGACCTCTATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG
HS_assemblymutate_np1212 ATAATGTACCTCTGGGGTATGACCTCTATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG
HS_haplotype2 ATAATGTACCTCTGGGGTATGACCTCAATAGTCCAGCATTAGAGAGAGGCTGTAGCGGCG
************************** *********************************
HS_haplotype1 GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCTTGGT
HS_assemblymutate_np1212 GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCTTGGT
HS_haplotype2 GGGATGTCAGCCAAGTTAAGTGGGATTTACCCACCTTTTTCTTGTAAATAGCATCGTGGT
******************************************************* ****
HS_haplotype1 TACGTTTCATCCCTAGAGTCATTTTTATCAGTCAGTAGAGGCCAAAGTACGATGTTGGAT
HS_assemblymutate_np1212 TACGTTTCATCCCTAGAGTCATTTTTATCAGTCAGTAGAGGCCAAAGTACGATGTTGGAT
HS_haplotype2 TACGTTTCATCCCTAGACTCATTTTTATCAGTCAGTAGAGGCCAAAGTATGATGTTGGAT
***************** ******************************* **********
HS_haplotype1 ATACATTAACCTGATCATCATCTTAGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA
HS_assemblymutate_np1212 ATACATTAACCTGATCATCATCTTAGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA
HS_haplotype2 ATACATTAACCTGATCATCATCTTGGCTCAGCTCTGATCCCACTGCACCACTGACTAAAA
************************ ***********************************
HS_haplotype1 ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG
HS_assemblymutate_np1212 ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG
HS_haplotype2 ATACCACGAGAATATGAACGTAAGCCACATAATTCAATTATTCCAAGGTTCAACCTGAAG
************************************************************
HS_haplotype1 CTTTCTCACCACTACCTTTGATTGTGTCGATGTCACTTGATGAGATTGAGGGCTAGAGTG
HS_assemblymutate_np1212 CTTTCTCACCACTACCTTTGATTGTGTCGATGTCACTTGATGAGATTGAGGGCTAGAGTG
HS_haplotype2 CTGTCTCACCACTACCTTTGATTGTGTCGATGTCACATGATGAGATTGAGGGCTAGAGTG
** ********************************* ***********************
HS_haplotype1 GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT
HS_assemblymutate_np1212 GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT
HS_haplotype2 GCATGCTTACCAAAGCAGGGAATGAAATTTTTTCTCCCCAGTGGCCTATGTTACCTCTGT
************************************************************
HS_haplotype1 CCTTGTCTTCTCGCTTACCAAAGCCCGGCCTTATTTTTGGTAAAACATCCTCCACAGTTT
HS_assemblymutate_np1212 CCTTGTCTTCTCGCTTACCAAAGCCCGGCCTTATTTTTGGTAAAACATCCTCCACAGTTT
HS_haplotype2 CCTTGTCTTCTCCCTTACCAAAGCCCGGCCTTATTTTCGGTAAAACATCCTCCACAGTTT
************ ************************ **********************
HS_haplotype1 TAATAGATCCCAAGAAGAAAAGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT
HS_assemblymutate_np1212 TAATAGATCCCAAGAAGAAAAGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT
HS_haplotype2 TAATAGATCCCAAGAAGAAATGTTTTAGTTAGCTGGTACAGAACTCAGCTCATCTCCCAT
******************** ***************************************
HS_haplotype1 GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT
HS_assemblymutate_np1212 GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT
HS_haplotype2 GCAAGATTTCAGCCACTCCCCAGCAGAAAACAAATTTTATGGTGGGATTCCACTTTGGCT
************************************************************
HS_haplotype1 GATATGGCTCAGCTAATAGGCATTCCCCAGCCTGTCCAGCTCTTTATGCAATGTACTACA
HS_assemblymutate_np1212 GATATGGCTCAGCTAATAGGCATTCCCCAGCCTGTCCAGCTCTTTTTGCAATGTACTACA
HS_haplotype2 GATATGGCTCAGCTAATAGGCATCCCCCAGCCTGTCCAGCTCTTTTTGCAATGTACTACA
*********************** ********************* **************
HS_haplotype1 CACCCAGAGGGCGCTTCAGACCTTCCTATGTATGTTTTAAAGTTAAACTATCCTTTTATA
HS_assemblymutate_np1212 CACCCAGAGGGCGCTTCAGACCTTCCTATGTAGTTTTTAAAGTTAAACCATCCTTTTATA
HS_haplotype2 CACCCAGAGGGCGCTTCAGACCTTCCTATGTAGTTTTTAAAGTTAAACCATCCTTTTATA
******************************** ************** ***********
HS_haplotype1 GAAAGTATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG
HS_assemblymutate_np1212 GAAAGTATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG
HS_haplotype2 GAAAGGATTCCTGAAATCAAAGTAGTAGCTGCCTCAAGAGCTGGGAAGGGCCAGGATATG
***** ******************************************************
HS_haplotype1 TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT
HS_assemblymutate_np1212 TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT
HS_haplotype2 TCCTAGAGACCTTTTCCCCCCGTGTGCCTTATCCCAGAGAAATATCACCTAAAATGGAAT
************************************************************
HS_haplotype1 GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTCGGCAGACATGGAGAAAATATCTGGT
HS_assemblymutate_np1212 GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTCGGCAGACATGGAGAAAATATCTGGT
HS_haplotype2 GGTGCTGAAGAAATGATGGAGGAAATCAGCTGGTGGGCAGACATGGAGAAAATATCTGGT
********************************** *************************
HS_haplotype1 GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC
HS_assemblymutate_np1212 GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC
HS_haplotype2 GATTGAGGACATATACTTTAATAGGAATGACAGGAGAGAGACTCACTAAACTGAAGCCCC
************************************************************
HS_haplotype1 GTCCAGTACTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG
HS_assemblymutate_np1212 GTCCAGTACTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG
HS_haplotype2 GTCCAGTCCTCTTATCGAACCTCACTTCTCTTAGTTCCTTCAAAGGGGATCTCATGTATG
******* ****************************************************
HS_haplotype1 TAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGAACAACTCTTAAATGCTGGGGAG
HS_assemblymutate_np1212 TAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGGACAACTCTTAAATGCTGGGGAG
HS_haplotype2 AAAGCACCTTGACTGCCCCTAATCCCTCCCCAGCAAGGACAACTCTTAAATGCTGGGGAG
************************************ **********************
HS_haplotype1 CCAGGGAGCTGGAGTCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG
HS_assemblymutate_np1212 CCAGGGAGCTGGAGTCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG
HS_haplotype2 CCAGGGAGCTGGAGGCTGACTAAATTCCTTCCCTCACAACAGACTTTGCTTAGCCGGCCG
************** *********************************************
HS_haplotype1 GGCCCTCAGACACAACAAGAATTACAGTGCTTCTTGCATTGATAGAGGAGAGAGATGACC
HS_assemblymutate_np1212 GGCCCTCAGACACAACAAGAATTACAGTGCTTCTTGCATTGATAGAGGAGAGAGATGACC
HS_haplotype2 GGCCCTCAAACACAACAAGAATTACCGTGCTTCTTGCATTGATAGAGGAGAGTGATGACC
******** **************** ************************** *******
HS_haplotype1 TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATCGATCTTACTC
HS_assemblymutate_np1212 TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATCGATCTTACTC
HS_haplotype2 TCCCTCTACCATGGCAATCTGAGGCTGTAAACACTAACCCTTCATTGATTGATCTTACTC
************************************************* **********
HS_haplotype1 GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACACATCATG
HS_assemblymutate_np1212 GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACACATCATG
HS_haplotype2 GGTGTGTTCACTGTAAATGTCCAGGCAGATTAGCAAACCCTGACGAAACTACACATCATG
************************************************************
HS_haplotype1 TATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA
HS_assemblymutate_np1212 TATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA
HS_haplotype2 TATCCTAGGGAGAGAGAATTAACAAAATTATACGTAGATTCCAAGCATCCCAGCAGTGTA
************************************************************
HS_haplotype1 GCTCTAATCCCAAATATCCTAATTGATAATTCTGGTTATGTCCTCAGCTACTCACTACTG
HS_assemblymutate_np1212 GCTCTAATCCCAAATATCCTAATTGATAATTCTGGTTATGTCCTCAGCTACTCACAACTG
HS_haplotype2 GCTCTAATCCCAAAGATCCTAAGTGATAATTCTGGTTATGTCCTCAGCTACTCACAACTG
************** ******* ******************************** ****
HS_haplotype1 AGTATAATTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA
HS_assemblymutate_np1212 AGTATAAGTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA
HS_haplotype2 AGTATAAGTTTAAAATCTTTGTACAAAGGAGGCGGGGTGCTTTGCAGATTACTCTGACCA
******* ****************************************************
HS_haplotype1 AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC
HS_assemblymutate_np1212 AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC
HS_haplotype2 AGCAGGAAAGCAGAGAGAAAGGATGGGAGGCTGCATTAAGAGGATAACAGGCTACCCTCC
************************************************************
HS_haplotype1 TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTTCTTTTCC
HS_assemblymutate_np1212 TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTACTTTTCC
HS_haplotype2 TCTGTATTTTCCATACTGGCTTTCCTTCTATTGAGACCAAGATCACTTTTTTACTTTTCC
**************************************************** *******
HS_haplotype1 GAAATCTCTTTCTTCCCTTTTTGCATTAATTGCTGTTGTATATATTTCATCTATTTTCAA
HS_assemblymutate_np1212 GAAATCTCTTTCTTCCCTTTTTGCATTAATTGCTGTTGTATATATTTCATCTATTTTCAA
HS_haplotype2 GAAATCTCTTTCTTCCCTTATTCCATTAATTGCTGTTCTATATATTTCATCTATTTTCAA
******************* ** ************** **********************
HS_haplotype1 GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTTAAGTTGATCTCTACAGGGTCGG
HS_assemblymutate_np1212 GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTTAAGTTGATCTCTACAGGGTCGG
HS_haplotype2 GTTTTGTCTTGTGTTCAGTCTTTTAGTCTGGTGTGGTCAAGTTGATCTCTACAGGGTCGG
************************************* **********************
HS_haplotype1 AGGCGGTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT
HS_assemblymutate_np1212 AGGCGGTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT
HS_haplotype2 AGGCGCTGCAAGAGACACAGAAGTTCATTACCCATAATCCTGGGAGCTTCTATTTGTTGT
***** ******************************************************
HS_haplotype1 GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTTC
HS_assemblymutate_np1212 GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTTC
HS_haplotype2 GGGCAAGACAGGAGCTGGTAGCACACAGAAAGAATTCCTGCCCAGCAGCAGAAGAGTTTC
************************************************************
HS_haplotype1 CTCAAAACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGGACAGCACAGG
HS_assemblymutate_np1212 CTCAAAACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGGACAGCACAGG
HS_haplotype2 CTCAAAACCACAGGTTTTTATATAAAAATACTGCAGTCAGCAGAGGCAGGACAGCACAGG
************************************************************
HS_haplotype1 AGATGGATCTGTTACGTGGTGTTTCGATGACTAAGTCAGGGGAGGAAGCAAGATCCCCCT
HS_assemblymutate_np1212 AGACGGATCTGTTATGTGGTGTTTCGATGACTAAGTCAGGGGAGGAAGCAAGATCCCCCT
HS_haplotype2 AGACGGATCTGTTATGTGGTGTTTCGATGACTAAGTCAGGGGAGGAAGCAAGATCCCCCT
*** ********** *********************************************
HS_haplotype1 CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA
HS_assemblymutate_np1212 CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA
HS_haplotype2 CCCTATCTCAGCCATGGTGGCGTCGCTTGGCCAGCACTCCTGGGTAACCTGGGGCCTCCA
************************************************************
HS_haplotype1 GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA
HS_assemblymutate_np1212 GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA
HS_haplotype2 GTGGGCTGGGGCTGAGGGAAGTTTTCCTAATAATTATTTATTCATTTTCCACCAACAGAA
************************************************************
HS_haplotype1 CAGTTACCTGTAAGTGACTTCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA
HS_assemblymutate_np1212 CAGTTACCTGTAAGTGACTCCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA
HS_haplotype2 CAGTTACCTGTAAGTGACTCCCCCCGCATTGAAATTGTGAGCTGGCTGGGGTAGTCTCTA
******************* ****************************************
HS_haplotype1 TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAAGAAATGTCTTAAAAATTACAGTG
HS_assemblymutate_np1212 TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAATAAATGTCTTAAAAATTACAGTG
HS_haplotype2 TAGAATGGGTGAGGGAAAGGGGTTCACAAATAGTTAATAAATGTCTTAAAAATTACAGTG
************************************* **********************
HS_haplotype1 CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG
HS_assemblymutate_np1212 CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG
HS_haplotype2 CTCTTTGCAGCAGAGAAATATAACTATACAAAATATGAGTTTTTCAATGCACATCACTAG
************************************************************
HS_haplotype1 AAAAATCATCATGGTTGTATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA
HS_assemblymutate_np1212 AAAAAACATCATGGTTGTATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA
HS_haplotype2 AAAAAACATCATGGTTATATTTTTCTTTTCCAGCCTCCGTTCTTTCCCTCCGTGCCCTGA
***** ********** *******************************************
HS_haplotype1 ATATCATTCCTCCTGACCAGGAGCCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT
HS_assemblymutate_np1212 ATATCATTCCTCCTGACCAGGAGCCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT
HS_haplotype2 ATATAATTCCTCCTGACCAGGAACCCCATATATGGTGGCACTGCTCCCTTTTTACTGGGT
**** ***************** *************************************
HS_haplotype1 TTTAAGCCTTGGTTGCAGTTGGCATGTAATACTACAAGACTTCCACCTGGTTAGGGTTAT
HS_assemblymutate_np1212 TTTAAGCCTTGGTTGCAGTTGGCATGTAATACTACAAGACTTCCACCTGGTTAGGGTTAT
HS_haplotype2 TTTAAGCCTTGGTTGCAGTTGGCATGGAATACTACAAGACTTCCAGCTGGTTAGGGTTAT
************************** ****************** **************
HS_haplotype1 TGCCTCCATTAACAGGCTGAATAGCATGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT
HS_assemblymutate_np1212 TGCCTCCATTAACAGGCTGAATAGCAGGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT
HS_haplotype2 TGCCTCCATTAACAGGCTGAATAGCAGGAGCCCAGGCTCAGGAAACCCTGCCCACCCCAT
************************** *********************************
HS_haplotype1 CTCTCCTGCCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCATGGGATAGC
HS_assemblymutate_np1212 CTCTCCTACCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCATGGGATAGC
HS_haplotype2 TTCTCCTACCCCATTTGTTATTATGTGCCCCCAACCCTATGGTGGCTTTCTTGGGATAGC
****** ****************************************** *********
HS_haplotype1 ATATACATCCCAACAAGTATATTAAATACTCCGCGCAGCTTCAGGTCTCTCCCCATATTT
HS_assemblymutate_np1212 ATATACATCCCAAGAAGTATATTAAATACTCCGCGCAGCTTCAGGTCTCTCCCCATATTT
HS_haplotype2 ATATACATCCCAAGAAGTATATTAAATACTCCGCGCAGCTTGAGGTCTCTCCCCCTATTT
************* *************************** ************ *****
HS_haplotype1 CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG
HS_assemblymutate_np1212 CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG
HS_haplotype2 CTAATCCCCAACATCATCTTGGTGGGTTCACTGCATACCAACTTGATAAAATAAAAAATG
************************************************************
HS_haplotype1 CTAGACTCCTGAATCAAACTTCACGAGACCTGAGGCCTTCCGTAATTATAAATAATCCTT
HS_assemblymutate_np1212 CTAGACTCCTGAATCAAACTTCTCGAGACCGGAGGCCTTCCGTAATTATAAATAATCCTT
HS_haplotype2 CTAGACTCCTGAATCAAACTTCTCGAGACCGGAGGCCTTCCGTAATTATAAATAATCCTT
********************** ******* *****************************
HS_haplotype1 TTGTGGTGATCACATGCCTAAGGGTAAAATCTTTCTTTTTTGTCTAAGAATTTTTCACCA
HS_assemblymutate_np1212 TTGTGGTGATCACATGCCTATGGGTAAAATCTTTCTTTTTTGTCTAAGAAATTTTCACCA
HS_haplotype2 TTGTGGTGATCACATGCCTATGGGTAAAATCTTTCTTTTTTGTCTAAGAAATTTTCACCA
******************** ***************************** *********
HS_haplotype1 ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCACACTCAGCTCTGAA
HS_assemblymutate_np1212 ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCACACTCAGCTCTGAA
HS_haplotype2 ACCGCGGCGCCCACTGCACAGAATGTGTAGAAGAAAATTTGTGGCTCACTCAGCTCTGAA
********************************************* **************
HS_haplotype1 GAGTTCATGTATGGTGTGTCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC
HS_assemblymutate_np1212 GAGTTCATGTATGGTGTGTCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC
HS_haplotype2 GAGTTCATGTATGGTGTGCCTCGATCCAAGATAGATTAGATCAGTGAGTTTGTCTTGCTC
****************** *****************************************
HS_haplotype1 CTCTTGAGGGGTAAATTTTTATTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA
HS_assemblymutate_np1212 CTCTTGAGGGGTAAATTTTTATTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA
HS_haplotype2 CTCTTGAGGGGTAAATTTTTATTTATTCCTTAGTATCGTCACTGTTCACCACACACAGAA
************************************************************
HS_haplotype1 GTCTGTCTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC
HS_assemblymutate_np1212 GTCTGTCTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC
HS_haplotype2 GTCTGTGTCCCATGGAAGGAATCACACACCCACCTCCTCCAGTTTCAGTTGTTTTCCTGC
****** *****************************************************
HS_haplotype1 CTGCCTGTATACCATCCAACCTCATGTCACTTTAAATAAGAGAGCATCACGACGGTTTAA
HS_assemblymutate_np1212 CTGCCTGTATACCATCCAACCTCATGTCACTTTAAATAAGAGAGCATCACGACGGTTTAA
HS_haplotype2 CTGACTGAATACCATCCAACCTCATGCCACTTTAAATAAGAGAGCATCACGACGGTTTAA
*** *** ****************** *********************************
HS_haplotype1 TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT
HS_assemblymutate_np1212 TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT
HS_haplotype2 TGAGCAAATTTTGAACACAGCAGGAGGGGTCACTAGCTGGCTCACAATTCAAGAATTTAT
************************************************************
HS_haplotype1 TTGGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT
HS_assemblymutate_np1212 TTGGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT
HS_haplotype2 TTTGAACCCTGATGGGGGTCAGAATACCCAGTGCTGCCTTAGGTTTTGAGCAGAAAGCAT
** *********************************************************
HS_haplotype1 TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG
HS_assemblymutate_np1212 TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG
HS_haplotype2 TCCAAAGGACAAAAGAGAAAGTGCTATGTTGTTTAATACACTTCCAGATAAGATGCAACG
************************************************************
HS_haplotype1 TGCCCATGATGAGAGCATCCTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG
HS_assemblymutate_np1212 TGCCCATGATGAGAGCATCCTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG
HS_haplotype2 TGCCAATGATGAGAGCATACTTTAATTTTCCATATGTGAAGGCCGGGGAGCACACAGTAG
**** ************* *****************************************
HS_haplotype1 GCAAAAAATTCCTTCTGCAGTGGAGGGGATTACTTTGACTTCAAAACGAGGCTTCCCTGG
HS_assemblymutate_np1212 GCAAAAAAATCCTTCTGAAGTGGAGGGGATTACTTTGACTTCAAAACAAGGCTTCCCTGG
HS_haplotype2 GCAAAAAAATCCTTCTGAAGTGGAGGGGATTACTTTGACTTCAAAACAAGGCTTCCCTGG
******** ******** ***************************** ************
HS_haplotype1 CGGAGTCAGGAGCTACTCTTATCAGCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT
HS_assemblymutate_np1212 CGGAGTCAGGAGCTACTCTTATCATCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT
HS_haplotype2 CGGAGTCAGGAGCTACTCTTATCATCTTGCCTTATCAGCACAAGGAGACGGGGACCTCAT
************************ ***********************************
HS_haplotype1 TTGTAAATATAGTCATATGCCTAACCTCTCAGAAATAAAATGTGACTGCGGCCCAGCTCC
HS_assemblymutate_np1212 TTGTAAATATAATCATATGCCTAACCTCTCAGAAATAATATGTGACTGCGGCCCAGCTCC
HS_haplotype2 TTGTAAATATAATCATATGCCTAACCTCTCAGAAATAATATGTGACTGCGGCCCAGCTCC
*********** ************************** *********************
HS_haplotype1 AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC
HS_assemblymutate_np1212 AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC
HS_haplotype2 AGCCACAACATAAATTTATTATTTATTAGTGGGCGGGCTTGTTGAAAGATAAGCTAGGGC
************************************************************
HS_haplotype1 ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT
HS_assemblymutate_np1212 ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT
HS_haplotype2 ACACTTCCCCAATAATTTTCCTACTCCGAGCATTCCTGAAAAATAACATAAGATTTCCAT
************************************************************
HS_haplotype1 GCCACCCTCCAGAGGTTGCAAAGTTAAAGAACAGTCTTGTGGTGAATATACGAAGTTCGG
HS_assemblymutate_np1212 GCCACCCTCCAGAGGTTGCAAAGTTAAAGAACAGTCTTGTGGTGAATATACGAAGTTCGG
HS_haplotype2 GCCACCCTCCTGAGGTTGCAAAGTTAAAGAACAGTCTTGTGGTGAATATACGAAGTTCGG
********** *************************************************
HS_haplotype1 TCTCCATATCAGATCAGCCTTCAGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT
HS_assemblymutate_np1212 TCTCCATATCAGATCAGCCTTCAGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT
HS_haplotype2 CCTCCATTTCAGATCAGCCTTCCGCTGTTATATGATGAGAAGATGTCTGCAATTTGAAAT
****** ************** *************************************
HS_haplotype1 TAGAGAATTGCATGCTGACCGCTCCCTGGTTTCACTGAGAAGATTTATATACACTAGATT
HS_assemblymutate_np1212 TAGAGAATTGCATGCTGACCGCTCCCTGGTTTCACTGAGAACATTTATATACACTAGATT
HS_haplotype2 TAGAGAATTGCATGCTGACCGCTCTCTGGTTTCACTGAGAACATTTATATACACTAGATT
************************ **************** ******************
HS_haplotype1 GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGC
HS_assemblymutate_np1212 GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGG
HS_haplotype2 GATACAATAGCTACCGCACCTTTCACCTTACGACACAGCTAAACTTGAATCTTCTGAAGG
***********************************************************
HS_haplotype1 TATGAAAACACTAACATCGCCTATACAAAACAAAGAGCTTGTGTCAGCGGGAGCAATTGA
HS_assemblymutate_np1212 TGTGAAAACAGTAACATAGCGTATACAATCCAAAGAGCTTGTGTCAGCGGGAGCAATTGA
HS_haplotype2 TGTGAAAACAGTAACATAGCGTATACAATCCAAAGAGCTTGTGTCAGCGGGAGCAATTGA
* ******** ****** ** ******* ******************************
HS_haplotype1 CGTCCGCTCTGCAACTTTGAGTCTCTGAAGAAAGGGCTCAACACCCAGCTCTCCCGGATC
HS_assemblymutate_np1212 CGTCCGCTCTGCAACTTTGAGTCTCTGAAGAAAGGGCTCAACACCCAGCTCTCCCGGATC
HS_haplotype2 CGTCCGCTCTGCAACTTTGAGTCTCTGAAGAAAGGGCACAACACCCAGCTCTCCCGGATC
************************************* **********************
HS_haplotype1 TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC
HS_assemblymutate_np1212 TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC
HS_haplotype2 TGGCCTTTTTAGATGTTCTTATAGCTCTTTTGAAATAGCTCTGAAAGCATCAACTCCACC
************************************************************
HS_haplotype1 ACGGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGA
HS_assemblymutate_np1212 ACAGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGA
HS_haplotype2 ACAGCGCGCTGGAGTTGGTGGAGAATCGCAGGAGAGCCCAGCCTGATAGAATATTGCTGG
** ********************************************************
HS_haplotype1 GTGCAGTATATGCTTTCTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC
HS_assemblymutate_np1212 GTGCAGTATATGCTTTCTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC
HS_haplotype2 GTGCAGTATATGCTTACTAAACTGGAACGCTTAAATTAATCCTATTGTGGTTGTGTGCTC
*************** ********************************************
HS_haplotype1 CAGGCAACACATCCTCACAGCAGCACATTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA
HS_assemblymutate_np1212 CAGGCAACACATCCTCACAGCAGCACATTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA
HS_haplotype2 CAGGCAACACATCCTCACAGCAGCACTTTCTCGTGGTGGTGATGTAACCGCGTTAGGTGA
************************** *********************************
HS_haplotype1 CCCTGAGGCCCATCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT
HS_assemblymutate_np1212 CCCTGAGGCCCATCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT
HS_haplotype2 CCCTGAGGCCCGTCTCACCTTCATCTAAAATTGTAAAAATATCATATTCTACTACACTTT
*********** ************************************************
HS_haplotype1 CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGTTTTTATTTTCTCCTCTGCTTTAT
HS_assemblymutate_np1212 CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGTTTTTATTTTCTCCTCTGCTTTAT
HS_haplotype2 CCATGTAGAGCAAGCCTCCCAGGATGATCTACTTAGCTTTTATTTTCTCCTCTGCTTTAT
************************************ ***********************
HS_haplotype1 TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG
HS_assemblymutate_np1212 TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG
HS_haplotype2 TCCCATGAAAACACTAGCAGAAGGATGCCCCTCCCCCTCAAGTGCAAAGATAGACATAGG
************************************************************
HS_haplotype1 AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATATTGGCACAGCGCA
HS_assemblymutate_np1212 AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATATTGGCACAGCGCA
HS_haplotype2 AAGAAAAGTGTTATCCATGAGTAACTGAAGCCCAGGGGTGAAATATTTTTGCACAGCGCA
********************************************** ** **********
HS_haplotype1 GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCAGTGTGAAGATTGCCAAATAATCATGA
HS_assemblymutate_np1212 GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCAGTGTGAAGATTGCCAAATAATCATGA
HS_haplotype2 GGCCATTTTAGCACAAGCCAGGTGAATTGCTGCATTGTGAAGATTGCCAAATAATCATGA
********************************** *************************
HS_haplotype1 GAGATTTGCATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA
HS_assemblymutate_np1212 GAGATTTGCATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA
HS_haplotype2 GAGATTTGCATACTCACAAAACATTGCAGTGCAGTGATCTTGGCCTCAAATATCGGTAGA
************************************************************
HS_haplotype1 AACAAACTGCATAGAAAAAATTGGTAAGAGATACTACAGGATCATGACCTAGCCGGCAAC
HS_assemblymutate_np1212 AACAAACTGCATAGAAAAAATTGGTAAGAGATACTACAGGATCATGACCTAGCCGGCAAC
HS_haplotype2 AACAAACTGCATAGAGAAAATTGGTAAGAGATACTACAGGATCATGAACTAGCCGGCAAC
*************** ******************************* ************
HS_haplotype1 ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT
HS_assemblymutate_np1212 ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT
HS_haplotype2 ATCCACCTTTAATCCCAGAAATGAAGCTTTATAATCCCTTTACAGAGTGGGAAAAGGTCT
************************************************************
HS_haplotype1 TCTGTTTTCATATGAACTTACAAGCAGGCTATTTTTTTATCATCCTCTGTGCTAATTTGG
HS_assemblymutate_np1212 TCTGTTTTCATATGAACTTACAAGCAGGCTATTTTTTTATCATCCTCTGTGCTAATTTGG
HS_haplotype2 TCTGTTTTCATATGAACATACAAGCAGGCTATTTTTCTATCATCCTCTGTGCTAATTTGG
***************** ****************** ***********************
HS_haplotype1 AAGACCTCCTGTTGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA
HS_assemblymutate_np1212 AAGACCTCCTGTTGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA
HS_haplotype2 AAGACCTCCTGTGGAGAGGTCACCACATCTCCCTTTGTGGAGCCAAGAGTGGAAGGCAGA
************ ***********************************************
HS_haplotype1 GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGGCTGC
HS_assemblymutate_np1212 GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGGCTGC
HS_haplotype2 GGTTATTGAGCCGCTCCTGGCCAATTTTGCGTGGAAGCTTTGCTAGAAAAGATGGTCTGC
******************************************************* ****
HS_haplotype1 CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA
HS_assemblymutate_np1212 CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA
HS_haplotype2 CTGCCTGGGTTTCCTCAAATATGTTCCAAATCTCACAGGATACCACATTCAACTCCCTGA
************************************************************
HS_haplotype1 GCAAAGTCTGCTGGCATTCCACCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC
HS_assemblymutate_np1212 GCAAAGTCTGCTGGCATTCCACCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC
HS_haplotype2 GCAAAGTCTGCTGGCATTCCAGCCTGGTGATGGAGGCACGACTCCAGGTGTAATTAAAAC
********************* **************************************
HS_haplotype1 AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG
HS_assemblymutate_np1212 AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG
HS_haplotype2 AAAGAACATGCCCGCCCAGGTACTGGTGAAAATACATGTGCACCACATTTTACAGCATAG
************************************************************
HS_haplotype1 AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC
HS_assemblymutate_np1212 AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC
HS_haplotype2 AATCATCTCACTGGAGTCTTGTCTGCTTGAAGAAATTCTCCTCCCAAGTGCTTCTCTTTC
************************************************************
HS_haplotype1 TGGGTTGAAAAATAATAGGTGATGTTTTTGTCCCTATAAATGTATATTGAATATTAAGTA
HS_assemblymutate_np1212 TGGGTTGAAAAATAATAGGTGATGTTTTTGTCCCTATAAATGTATATTGAATATTAAGTA
HS_haplotype2 TTGGTTGCATAATAATAGGTGATGTTTTCGTCCCTATAAATGTATATTGAATATTAAGTA
* ***** * ****************** *******************************
HS_haplotype1 ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG
HS_assemblymutate_np1212 ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG
HS_haplotype2 ATGTTTTACCCAGGGTGGTAATGGTAGAAAATAATCAGGGGACACAACACATCCTATGTG
************************************************************
HS_haplotype1 GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCGCTGTTGCAAGAGAACAAGGAAGCCAT
HS_assemblymutate_np1212 GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCTCTGTTGCAAGAGAACAAGGAAGCCAT
HS_haplotype2 GAGAGGGTGATCCAAAATGAACCGTCTGGAGTCTCTGTTGCAAGAGAACAAGGAAGCCAT
********************************* **************************
HS_haplotype1 TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG
HS_assemblymutate_np1212 TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG
HS_haplotype2 TGTCCACAATCCCTTCCTTTATCAGCACACAAACAATTTTCCCAGCGGGCAGCCCCAGGG
************************************************************
HS_haplotype1 ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG
HS_assemblymutate_np1212 ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG
HS_haplotype2 ACCGTGAAGAACACAGCCTTCCTCCCAAATGGTTTAAATTTCCCCCAAATTCGGGTCTTG
************************************************************
HS_haplotype1 CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG
HS_assemblymutate_np1212 CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG
HS_haplotype2 CCATTAGTAGGGTGGCTCTGAAACTCAGAATGAATATACAAAATTGTGTGATCTGCCTGG
************************************************************
HS_haplotype1 GGACATGGTATGAAACCCTTCAACAAAAATTAAATACTTAGGCTTTCAAAGGCCTTCCCC
HS_assemblymutate_np1212 GGACATGGTATGAAACCCTTCAACAAAAATTAAATAGTTAGGCTTTCAAAGGCCTTCCCC
HS_haplotype2 GAACATGGTATGAAACCCTTCAACAAAAATTAAATAGTTAGGCTTTCAAAGGCCTTCCCC
* ********************************** ***********************
HS_haplotype1 CATGCTAACAGGCAACAGATCATTTTTGGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT
HS_assemblymutate_np1212 CATGCTAATAGGCAACAGATCATTTTTTGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT
HS_haplotype2 CATGCTAATAGGCAACAGATCATTTTTTGGCCAGCCTGGCGACGGTGAGCTGGGAGGTTT
******** ****************** ********************************
HS_haplotype1 AAAAGACAGACTATATATGGAATAATAAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG
HS_assemblymutate_np1212 AAAAGACAGACTATATATGGAATAATTAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG
HS_haplotype2 AAAAGACAGACTATATATGGAATAATTAAGTACAGAGCTGAAAAGCAACCCCTGGGCTGG
************************** *********************************
HS_haplotype1 GTGAATCATAGGTTTATTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG
HS_assemblymutate_np1212 GTGAATCATAGGTTTGTTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG
HS_haplotype2 GTGAATCATAGGTTTGTTTTTACATATTCTAATCAAGGCGGCGGGAGGTGCTTGCCTCTG
*************** ********************************************
HS_haplotype1 TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG
HS_assemblymutate_np1212 TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG
HS_haplotype2 TATGCTGAATAGTTACAGGAACCCCTTCCTCTGGTCCTCATGGAGATCACTATTGCTCTG
************************************************************
HS_haplotype1 TAAGAACTCATTGCACTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC
HS_assemblymutate_np1212 TAAGAACTCATTGCAGTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC
HS_haplotype2 TAAGAACTCATTGCAGTGAGATACTTACCTAGTCGCTCACTTTGGAGCCCCACCCTTTAC
*************** ********************************************
HS_haplotype1 TTCTTTGGTCCTATACAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG
HS_assemblymutate_np1212 TTCTTTGGTCCTATATAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG
HS_haplotype2 TTCTTTGGTCCTATATAGCAGATGGTGGCTTCTAGCAGCAACCAATTATAAGCCACATCG
*************** ********************************************
HS_haplotype1 GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA
HS_assemblymutate_np1212 GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA
HS_haplotype2 GCCCCTCAAACTTCTAATGAACACATATATACTAAGCAGGCCCACTAGAGATTCCCTGCA
************************************************************
HS_haplotype1 ATTTAGTGGGACTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA
HS_assemblymutate_np1212 ATTTAGTGGGACTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA
HS_haplotype2 ATTTAGTGGGCCTCCCAGTGATAAATAATTAAAAGGTGGCATTCACTATGAAGATGATAA
********** *************************************************
HS_haplotype1 GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA
HS_assemblymutate_np1212 GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA
HS_haplotype2 GTTATCTCTGTTGATACCAGAGGAAGAACCCATGCATTCTAAGTTTGAAAAAGAATGTCA
************************************************************
HS_haplotype1 TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC
HS_assemblymutate_np1212 TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC
HS_haplotype2 TGAATGAAGATCTCTTAGAACTTTGCGCCCAGTTTCATATTGATTAACAAAAGAAATGGC
************************************************************
HS_haplotype1 AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTGCAC
HS_assemblymutate_np1212 AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTGCAC
HS_haplotype2 AATTGGGCACGTAAAACACGCCAGGGTGCAGCCTGAAATGAACCTCTGCCTCCTCTACAC
******************************************************** ***
HS_haplotype1 CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC
HS_assemblymutate_np1212 CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC
HS_haplotype2 CACACAATTTTCACACAGCCTCTCCTCATGTCCCGGGTCTCAACACACAAATACCACAGC
************************************************************
HS_haplotype1 CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT
HS_assemblymutate_np1212 CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT
HS_haplotype2 CTGGGGAGAAAGCTTCTGGGCATTCCCCAAACGTGAGCAGAGGTCAATCATAGAGACAGT
************************************************************
HS_haplotype1 TCAAAATGAGGCTCAGACACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTAC
HS_assemblymutate_np1212 TCAAAATGAGGCTCAGACACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTAC
HS_haplotype2 TCAAAATGAGGCTCAGCCACCAAGTTTAAAACAGGAAATTACTCCTATGTGTTTTACTGC
**************** ***************************************** *
HS_haplotype1 AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT
HS_assemblymutate_np1212 AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT
HS_haplotype2 AATTCCCCTAATCAGTTTTGTTAAGTAATCTCAAAATAGGAGACAAAATATATAAAGCTT
************************************************************
HS_haplotype1 AAGTTAAGTAGAGAGATACGATGGAGCGCCTTAAAATGTATTTAGCCCGCTACAAGGAGT
HS_assemblymutate_np1212 AAGTTAAGTAGAGCGATACGATGGAGCGCCTTAAAATGTATTTAGCCCGCTACAAGGAGA
HS_haplotype2 AAGTTAAGTAGAGCGATACGATGGAGCGCCTTAAAATGTATTTAGCCCGCTACAAGGAGA
************* *********************************************
HS_haplotype1 GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC
HS_assemblymutate_np1212 GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC
HS_haplotype2 GCAACCGCCCGAGGTCAGACAGACAGCTCCGGCCCCTGTGAATTTCCAAAGCAGTTGTTC
************************************************************
HS_haplotype1 CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGCT
HS_assemblymutate_np1212 CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGCT
HS_haplotype2 CACTCTTGAGCTAATTAAAAAAAGATATTTTTATTGAAATGTCATATTAGCCACCCTGCT
************************************************************
HS_haplotype1 AGTGTTATGCACTCAGAGACTAAGGTCCTAATGGCATGTGCTTCCTGCTAAGCAAGGGAC
HS_assemblymutate_np1212 AGTGTTACGCACTCAGAGACTAAGGTCCTAATGGCATGTGCTTCCTGCTAAGGAAGGGAC
HS_haplotype2 AGTGTTACGCACTCAGAGACTAAGGTCCTAATGGCATGTGCTTCCTGCTAAGGAAGGGAC
******* ******************************************** *******
HS_haplotype1 TCTCTCTGTTATAACCATCCCGGGCGCCAGTAGTTCTGTTATGACGCGGCTTTCATGGCG
HS_assemblymutate_np1212 TCTCTCTGTTATAACCATCCCGGGCGCCAGTAGTTCTGTTATGACGCGGCTTTCATGGCG
HS_haplotype2 TCTCTCTGTTATAACCATCCCGGGCGACAGTAGTTCTGTTATGACGCGGCTTTCATGGCG
************************** *********************************
HS_haplotype1 TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGAGTTTAGTGAGTGTGTGATCTGCA
HS_assemblymutate_np1212 TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGAGTTTAGTGAGTGTGTGATCTGCA
HS_haplotype2 TGAAGATAGACTCTCACCACCCGCCCCAAAATAGAGAGTTTAGTGAGTGTGTGATCTGCA
************************************************************
HS_haplotype1 AGCATTTCCCCAAATTTATATAGCAGTATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC
HS_assemblymutate_np1212 AGCATTTCCCCAAATTTATATAGCAGTATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC
HS_haplotype2 AGCATTTCCCCAAATTTATATAGCAGTATTGCCATTAGAAGCTGCTGCCCTGCCTTGTTC
************************************************************
HS_haplotype1 CAGCATTTTCTACTAAAGAATGTAATGTAGAGTAGGCTGAAGAGGCTCTACTCATGTAAT
HS_assemblymutate_np1212 CAGCATTTTCTACTAAAGAATGTAATGGAGAGTAGGCTGAAGAGGCTCTACTCATGTGAT
HS_haplotype2 CAGCATTTTCTACTAAAGAATGTAATGGAGAGTAGGCTGAAGCGGCTCTACTCATGTGAT
*************************** ************** ************** **
HS_haplotype1 GTTTTATAGACAGCATTAACTCCTAATAATGGGTAGGAAGAAATGTTGAGGGATTTTGAA
HS_assemblymutate_np1212 TTTTTATAGACAGCATTAACTCCTAATAATGGGTAGGCAGAAATGTTGAGGGATTTTCAA
HS_haplotype2 TTTTTATAGACAGCATTAACTCCTAATAATGGGTAGGCAGAAATGTTGAGGGATTTTCAA
************************************ ******************* **
HS_haplotype1 ACATCTACCATGCTTAAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG
HS_assemblymutate_np1212 ACATCTACCATGCTTTAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG
HS_haplotype2 ACATCTACCATGCTTTAAAGGATTTCTGGTGATAATCAGAACATTGCCCAGCAGCCTGAG
*************** ********************************************
HS_haplotype1 ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC
HS_assemblymutate_np1212 ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC
HS_haplotype2 ACAGAATGAGACCTGCTTCACTGCTACAATGGTGGGACATAGCCTGCCTGGGGAAGCCCC
************************************************************
HS_haplotype1 TATTTAAAGGATGGCTTCACATGTTCACGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT
HS_assemblymutate_np1212 TATTTAAAGGATGGCTTCACATGTTCAGGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT
HS_haplotype2 TATTTAAAGGATGGCTTCACATGTTCAGGAGACCTAAAATTAGCGGGGTTTTTTGAGCAT
*************************** ********************************
HS_haplotype1 ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATGAGGCTTATTGTCT
HS_assemblymutate_np1212 ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATCAGGCTTATTGTCT
HS_haplotype2 ACTCGGCTGGCCACAAAGACGTGATATTTACCACTCAGGTCAGCATCAGGCTTATTGTCT
********************************************** *************
HS_haplotype1 GGGTTTCAGTCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACATCATGCCCGGCTCA
HS_assemblymutate_np1212 GGGTTTCAATCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACAACATGCCCGGCTCA
HS_haplotype2 GGGTTTCAATCCAGGACAGAGGGTGCTGCACTTTCTTCCCCATACAACATGCCCGGCTCA
******** ************************************* *************
HS_haplotype1 CTCCTGCCTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG
HS_assemblymutate_np1212 CTCCTGCGTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG
HS_haplotype2 CTCCTGCGTCAAGGTAAGGTGCCACCGCTGGAACTCCTCTACATATCATGAAGGGCCAGG
******* ****************************************************
HS_haplotype1 ACTATCTTTCCTTCCAGGAGAGGTAGAGATTGCTGTTTCCATGGGTGTATACATACTCGG
HS_assemblymutate_np1212 ACTATCTTTCCTTCCAGGAGAGGTAGAGATTGCTGTTTCCATGGGTGTATACATACTCGG
HS_haplotype2 ACTATCTTTCCTTCCAGGAGAGGTTGAGATTGCTGTTTCCATGGGTATATACATACTCGG
************************ ********************* *************
HS_haplotype1 GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC
HS_assemblymutate_np1212 GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC
HS_haplotype2 GAGGTGATCAATACATGGATATTCAAAATGTACAGAGCATGGGTGGGGTGCTAAGGGGTC
************************************************************
HS_haplotype1 AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA
HS_assemblymutate_np1212 AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA
HS_haplotype2 AGAAGAGGTGGCTTCTCTAATTTACCTGTATTTAAAACAAACAGATACTCTTACATGATA
************************************************************
HS_haplotype1 GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG
HS_assemblymutate_np1212 GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG
HS_haplotype2 GTCTCCCCGCCAGGGAGGCAGGACTTATAAAAAGCTGGTTTCATTACCCTGCTCCTCACG
************************************************************
HS_haplotype1 CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA
HS_assemblymutate_np1212 CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA
HS_haplotype2 CTTCCTACAGGCATGACCGCAGCACCACAGCCTGGTGTGGCTGTGAATCTTTAAAATTAA
************************************************************
HS_haplotype1 GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC
HS_assemblymutate_np1212 GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC
HS_haplotype2 GGGGGCACCACGGCCTGAGATCCACCCTTCTAACTTCAGGAACCAAGCAATTTATGTTTC
************************************************************
HS_haplotype1 TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG
HS_assemblymutate_np1212 TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG
HS_haplotype2 TTCCTCTACTTGAAAAAATACATAAATCAACGTGGTGTGGCTGAGACGGCTCACGTGGTG
************************************************************
HS_haplotype1 TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA
HS_assemblymutate_np1212 TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA
HS_haplotype2 TTGTTGCCTCGATAGGAAAAAGAACATTATATCCATTTAATGAGCAGGGGGTTTTCCCAA
************************************************************
HS_haplotype1 AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC
HS_assemblymutate_np1212 AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC
HS_haplotype2 AAGCAGATGTTACTGAGGGCCAGGAGAGACATGAGCCCTTCAGAGAATGTAAAAAAAACC
************************************************************
HS_haplotype1 TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA
HS_assemblymutate_np1212 TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA
HS_haplotype2 TCTGGTCTGCCAAATTGTTGCTACAGGCGGCGCAGCCTCCACCACCAGGTGCCTGGCTCA
************************************************************
HS_haplotype1 ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT
HS_assemblymutate_np1212 ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT
HS_haplotype2 ATTAACAAGGCAAATCCTAAATTTCCACTCCACCTGGGTGTTTCCTTTGGGGCTACAACT
************************************************************
HS_haplotype1 CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC
HS_assemblymutate_np1212 CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC
HS_haplotype2 CACGCACAATAAGTATTTACTTGAATGTGGATGTGAGGCACCAGCCTCCATGCTTATCTC
************************************************************
HS_haplotype1 AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG
HS_assemblymutate_np1212 AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG
HS_haplotype2 AAATTTTTTTCTTTCTGGTATGTTCTCCATCATTCTGCACCTTCACACTCTGACTTCATG
************************************************************
HS_haplotype1 GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG
HS_assemblymutate_np1212 GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG
HS_haplotype2 GAGAAATGATGTTACCATCTTTATTAAGTATATACTAGGGACGACTTAAAATACAATGTG
************************************************************
HS_haplotype1 CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA
HS_assemblymutate_np1212 CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA
HS_haplotype2 CTACCCCTGTGGGGGAAAAAGCACAAGACTAAATGCCCTGGCCATGCATCCAGCAGACCA
************************************************************
HS_haplotype1 GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG
HS_assemblymutate_np1212 GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG
HS_haplotype2 GAAGTAAGTGCCCAGTAAGAAATATCACAAAAACACAGGCCAAGGGCATGCTCTACGAAG
************************************************************
HS_haplotype1 AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT
HS_assemblymutate_np1212 AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT
HS_haplotype2 AAATATCGGGCGAAATATAAGGAATTTCAGCCTTACAGGGTGGCCCTCTTAATATTGTTT
************************************************************
HS_haplotype1 TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT
HS_assemblymutate_np1212 TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT
HS_haplotype2 TAGAGTACGTCTCCCAGTAGAGACACTGCCTTCTTTGTCCGCGAAACCCAGGTTTGCAAT
************************************************************