Welcome to fastxtend!

fastxtend is an extension of FASTX-Toolkit package

It provides four commands line tools for Short-Reads FASTA/FASTQ files preprocessing:

  • fastx_clean allows cleaning (adapters, N, quality) of the reads in fastq files.
  • fastx_duplicatedReads estimates the duplicates rate of reads (single or pair reads).
  • fastx_mergepairs perform the merging of the paired reads and give some statistics (merged size, percent of pairs merged).
  • fastx_stats to display quality values distribution.

Use the button below to download the software from github.

fastxtend [a] genoscope [.] cns [.] fr