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About the project
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| The genome sequencing of T. melanosporum was performed by the Genoscope, Institut de Genomique, CEA. The automatic genome annotation made use of the GAZE framework. Manual genome annotation and transcriptome analysis were performed by an international consortium coordinated by INRA-Nancy. This project received funds from Genoscope, Institut de Genomique, CEA, the European FP6 Network of Excellence EVOLTREE, Region Lorraine, the ANR FungEffector project, Fondazione Cariparma, Compagnia di San Paolo-Torino, the Italian Ministry of Education, University and Research (MIUR), Regione Umbria and Instituto Pasteur Fondazione Cenci Bolognetti. |
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Search by position or name
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Search using a sequence name, gene name, locus, or other landmark.
The wildcard character * is allowed
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Search :
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Displays :
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scaffold_1:1..10000
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region of scaffold_1 from 157,658 to 177,657
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GSTUMT00009626001
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region of Genoscope annotation with identifier GSTUMT00009626001
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Q2U6C2
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matches with O82640 Aspergillus oryzae protein from Uniprot
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TuberDB at INRA
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Tuber melanosporum - Claude Murat - INRA
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Assembly summary (download)
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Number
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N50 length (kb)
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Size (kb)
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Reads
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1,262,177
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Contigs ( &ge 2kb)
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4,484
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62kb
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Scaffolds
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398
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637
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124,946
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Annotation summary (download)
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Annotated gene models
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7,496
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Average number of coding exons per gene
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4.51
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Average gene size (bp)
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2073
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Average coding exon size (bp)
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340
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Average intron size (bp)
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107 |
Average peptide size (aa)
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439 |
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