Les chercheurs de l'UMR 8030 sont indiqués en gras parmi les auteurs. Vous pouvez aussi accéder à  la liste plus étendue des publications signées par les collaborateurs du Genoscope.

2001 - 2002 - 2003 - 2004

2001

• Avner P., Brüls T., Poras I., Eley L., Gas S., Ruiz P., Wiles M.V., Sousa-Nunes R., Kettleborough R., Rana A., Morissette J., Bentley L., Goldsworthy M., Haynes A., Herbert E., Southam L., Lehrach H., Weissenbach J., Manenti G., Rodriguez-Tome P., Beddington R., Dunwoodie S. and Cox R.D.,
  
  A radiation hybrid transcript map of the mouse genome. Nat. Genet. 29:194-200 (2001).




• Balzergue S., Dubreucq B., Chauvin S., Le-Clainche I., Le Boulaire F., de Rose R., Samson F., Biaudet V., Lecharny A., Cruaud C., Weissenbach J., Caboche M. and Lepiniec L.,
  
  Improved PCR-walking for large-scale isolation of plant T-DNA borders. Biotechniques 30:496-8, 502, 504 (2001).




• Bernard O.A., Busson-LeConiat M., Ballerini P., Mauchauffe M., Della Valle V., Monni R., Nguyen Khac F., Mercher T., Penard-Lacronique V., Pasturaud P., Gressin L., Heilig R., Daniel M.T., Lessard M. and Berger R.,
  
  A new recurrent and specific cryptic translocation, t(5;14)(q35;q32), is associated with expression of the Hox11L2 gene in T acute lymphoblastic leukemia. Leukemia 15:1495-504 (2001).




• Bolotin A., Wincker P., Mauger S., Jaillon O., Malarme K., Weissenbach J., Ehrlich S.D. and A. Sorokin,
  
  The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res. 11:731-753 (2001).




• Brüls T., Gyapay G., Petit J.L., Artiguenave F., Vico V., Qin S., Tin-Wollam A.M., Da Silva C., Muselet D., Mavel D., Pelletier E., Levy M., Fujiyama A., Matsuda F., Wilson R., Rowen L., Hood L., Weissenbach J., Saurin W. and Heilig R.,
  
  A physical map of human chromosome 14. Nature 409:947-948 (2001).




• Chambaud I., Heilig R., Ferris S., Barbe V., Samson D., Galisson F., Moszer I., Dybvig K., Wroblewski H., Viari A., Rocha E. and Blanchard A.,
  
  The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis. Nucl. Acid. Res. 29:2145-2153 (2001).




• Charlier C., Segers K., Karim L., Shay T., Gyapay G., Cockett N. and Georges M.,
  
  The callipyge mutation enhances the expression of coregulated imprinted genes in cis without affecting their imprinting status. Nat. Genet. 27:367-369 (2001).




• Charlier C., Segers K., Wagenaar D., Karim L., Berghmans S., Jaillon O., Shay T., Weissenbach J., Cockett N., Gyapay G. and Georges M.,
  
  Human-Ovine Comparative Sequencing of a 250-kb Imprinted Domain Encompassing the Callipyge (clpg) Locus and Identification of Six Imprinted Transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8. Genome Res. 11:850-862 (2001).




• de la Canal L., Crouzillat D., Quétier F. and Ledoigt G.,
  
  A transcriptional alteration on the apt9 gene is associated with a sunflower male-sterile cytoplasm. Theor. Appl. Genet. 102:1185-1189 (2001).




• Dsring V., Mootz H.D., Nangle L.A., Hendrickson T.L., de Crecy-Lagard V., Schimmel P. and Marlière P.,
  
  Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway. Science 292:501-504 (2001).




• Fischer J., Bouadjar B., Heilig R., Huber M., Lefevre C., Jobard F., Macari F., Bakija-Konsuo A., Ait-Belkacem F., Weissenbach J., Lathrop M., Hohl D. and Prud'homme J.F.,
  
  Mutations in the gene encoding SLURP-1 in Mal de Meleda. Hum. Mol. Genet. 10:875-880 (2001).




• Heilig R. and Brüls T.,
  
  Premiers regards sur la séquence du génome humain. Med. Sci. 17:299-308 (2001).




• International Human Genome Sequencing Consortium (Weissenbach J., Heilig R., Saurin W., Artiguenave F., Brottier P., Brüls T., Pelletier E., Robert C., Wincker P. for Genoscope),
  
  Initial sequencing and analysis of the human genome. Nature 409:860-921 (2001).




• Katinka M.D., Duprat S., Cornillot E., Metenier G., Thomarat F., Prensier G., Barbe V., Peyretaillade E., Brottier P., Wincker P., Delbac F., El Alaoui H., Peyret P., Saurin W., Gouy M., Weissenbach J. and Vivares C.P.,
  
  Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414:450-453 (2001).




• Le Paslier D. and Bernot A.,
  
  Le projet génome humain : quinze ans d'efforts. Med. Sci. 17:294-298 (2001).




• Lecompte O., Ripp R., Puzos-Barbe V., Duprat S., Heilig R., Dietrich J., Thierry J.C. and Poch O.,
  
  Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea. Genome Res. 11:981-93 (2001).




• Lefevre C., Jobard F., Caux F., Bouadjar B., Karaduman A., Heilig R., Lakhdar H., Wollenberg A., Verret J.L., Weissenbach J., Ozguc M., Lathrop M., Prud'homme J.F. and Fischer J.,
  
  Mutations in cgi-58, the gene encoding a new protein of the esterase/lipase/thioesterase subfamily, in chanarin-dorfman syndrome. Am. J. Hum. Genet. 69:1002-12 (2001).




• Ogata H., Audic S., Renesto-Audiffren P., Fournier P.E., Barbe V., Samson D., Roux V., Cossart P., Weissenbach J., Claverie J.M. and Raoult D.,
  
  Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science 293:2093-8 (2001).




• Peyret P., Katinka M.D., Duprat S., Duffieux F., Barbe V., Barbazanges M., Weissenbach J., Saurin W. and Vivares C.P.,
  
  Sequence and Analysis of Chromosome I of the Amitochondriate Intracellular Parasite Encephalitozoon cuniculi (Microspora). Genome Res. 11:198-207 (2001).




• Robert-Nicoud M., Flahaut M., Elalouf J.M., Nicod M., Salinas M., Bens M., Doucet A., Wincker P., Artiguenave F., Horisberger J.D., Vandewalle A., Rossier B.C. and Firsov D.,
  
  Transcriptome of a mouse kidney cortical collecting duct cell line: Effects of aldosterone and vasopressin. Proc. Natl. Acad. Sci. U S A 98:2712-2716 (2001).




• Roest Crollius H.,
  
  Le génome humain : une séquence pour le prix de deux? Med. Sci. 17:309-311 (2001).




• Rondeau G., Moreau I., Bezieau S., Petit J.L., Heilig R., Fernandez S., Pennarun E., Myers J.S., Batzer M.A., Moisan J.P. and Devilder M.C.,
  
  Comprehensive analysis of a large genomic sequence at the putative B-cell chronic lymphocytic leukaemia (B-CLL) tumour suppresser gene locus. Mutat. Res. 458:55-70 (2001).




• The International Human Genome Mapping Consortium (Weissenbach J., Brüls T. and Heilig R. for Genoscope),
  
  A physical map of the human genome. Nature 409:934-941 (2001).




• Vigneau S., Levillayer F., Crespeau H., Cattolico L., Caudron B., Bihl F., Robert C., Brahic M., Weissenbach J. and Bureau J.F.,
  
  Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15. Genomics 78:206-13 (2001).

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2002

• Altschmied J., Delfgaauw J., Wilde B., Duschl J., Bouneau L., Volff J.N. and Schartl M.,
  
  Subfunctionalization of duplicate mitf genes associated with differential degeneration of alternative exons in fish. Genetics 161:259-267 (2002).




• Attard A., Gout L., Gourgues M., Kuhn M.L., Schmit J., Laroche S., Ansan-Melayah D., Billault A., Cattolico L., Balesdent M.H. and Rouxel T.,
  
  Analysis of molecular markers genetically linked to the Leptosphaeria maculans avirulence gene AvrLm1 in field populations indicates a highly conserved event leading to virulence on Rlm1 genotypes. Mol. Plant Microbe Interact. 15:672-682 (2002).




• Chureau C., Prissette M., Bourdet A., Barbe V., Cattolico L., Jones L., Eggen A., Avner P. and Duret L.,
  
  Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Genome Res. 12:894-908 (2002).




• Coimbra R.S., Weil D., Brottier P., Blanchard S., Levi M., Hardelin J.P., Weissenbach J. and Petit C.,
  
  A subtracted cDNA library from the zebrafish (Danio rerio) embryonic inner ear. Genome Res. 12:1007-1011 (2002).




• Coullin P., Crooijmans R.P., Groenen M.A., Heilig R., Mollicone R., Oriol R. and Candelier J.J.,
  
  Assignment of FUT8 to chicken chromosome band 5q1.4 and to human chromosome 14q23.2-->q24.1 by in situ hybridization. Conserved and compared synteny between human and chicken. Cytogenet. Genome Res. 97:234-8 (2002).




• Da Silva, C., Hadji H., Ozouf-Costaz C., Nicaud S., Jaillon O., Weissenbach J. and Roest Crollius H.,
  
  Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome. Proc. Natl. Acad. Sci. USA 99:13636-13641 (2002).




• De Lonlay P., Mugnier C., Sanlaville D., Chantrel-Groussard K., Benit P., Lebon S., Chretien D., Kadhom N., Saker S., Gyapay G., Romana S., Weissenbach J., Munnich A., Rustin P. and Rotig A.,
  
  Cell complementation using Genebridge 4 human:rodent hybrids for physical mapping of novel mitochondrial respiratory chain deficiency genes. Hum. Mol. Genet. 11:3273-3281 (2002).




• Fischer C., Bouneau L., Ozouf-Costaz C., Crnogorac-Jurcevic T., Weissenbach J. and Bernot A.,
  
  Conservation of the T-cell receptor alpha/delta linkage in the teleost fish Tetraodon nigroviridis. Genomics 79:241-248 (2002).




• Grutzner F., Roest Crollius H., Lutjens G., Jaillon O., Weissenbach J., Ropers H.H. and Haaf T.,
  
  Four-hundred million years of conserved synteny of human Xp and Xq genes on three Tetraodon chromosomes. Genome Res. 12:1316-1322 (2002).




• Holt R.A., Subramanian G.M., Halpern A., Sutton G.G., Charlab R., Nusskern D.R., Wincker P., Clark A.G., Ribeiro J.M., Wides R., Salzberg S.L., Loftus B., Yandell M., Majoros W.H., Rusch D.B., Lai Z., Kraft C.L., Abril J.F., Anthouard V., Arensburger P., Atkinson P.W., Baden H., de Berardinis V., Baldwin D., Benes V., Biedler J., Blass C., Bolanos R., Boscus D., Barnstead M., Cai S., Center A., Chatuverdi K., Christophides G.K., Chrystal M.A., Clamp M., Cravchik A., Curwen V., Dana A., Delcher A., Dew I., Evans C.A., Flanigan M., Grundschober-Freimoser A., Friedli L., Gu Z., Guan P., Guigo R., Hillenmeyer M.E., Hladun S.L., Hogan J.R., Hong Y.S., Hoover J., Jaillon O., Ke Z., Kodira C., Kokoza E., Koutsos A., Letunic I., Levitsky A., Liang Y., Lin J.J., Lobo N.F., Lopez J.R., Malek J.A., McIntosh T.C., Meister S., Miller J., Mobarry C., Mongin E., Murphy S.D., O'Brochta D.A., Pfannkoch C., Qi R., Regier M.A., Remington K., Shao H., Sharakhova M.V., Sitter C.D., Shetty J., Smith T.J., Strong R., Sun J., Thomasova D., Ton L.Q., Topalis P., Tu Z., Unger M.F., Walenz B., Wang A., Wang J., Wang M., Wang X., Woodford K.J., Wortman J.R., Wu M., Yao A., Zdobnov E.M., Zhang H., Zhao Q., Zhao S., Zhu S.C., Zhimulev I., Coluzzi M., della Torre A., Roth C.W., Louis C., Kalush F., Mural R.J., Myers E.W., Adams M.D., Smith H.O., Broder S., Gardner M.J., Fraser C.M., Birney E., Bork P., Brey P.T., Venter J.C., Weissenbach J., Kafatos F.C., Collins F.H. and Hoffman S.L.,
  
  The genome sequence of the malaria mosquito Anopheles gambiae. Science 298:129-149 (2002).




• Jobard F., Lefevre C., Karaduman A., Blanchet-Bardon C., Emre S., Weissenbach J., Ozguc M., Lathrop M., Prud'homme J.F. and Fischer J.,
  
  Lipoxygenase-3 (ALOXE3) and 12(R)-lipoxygenase (ALOX12B) are mutated in non-bullous congenital ichthyosiform erythroderma (NCIE) linked to chromosome 17p13.1. Hum. Mol. Genet. 11:107-113 (2002).




• Journet E.P., van Tuinen D., Gouzy J., Crespeau H., Carreau V., Farmer M.J., Niebel A., Schiex T., Jaillon O., Chatagnier O., Godiard L., Micheli F., Kahn D., Gianinazzi-Pearson V. and Gamas P.,
  
  Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis. Nucleic Acids Res. 30:5579-5592 (2002).




• Médigue C., Bocs S., Labarre L., Mathé C. and Vallenet D.,
  
  L'annotation in silico des séquences génomiques. Med. Sci. 18:237-250 (2002).




• Salanoubat M., Genin S., Artiguenave F., Gouzy J., Mangenot S., Arlat M., Billault A., Brottier P., Camus J.C., Cattolico L., Chandler M., Choisne N., Claudel-Renard C., Cunnac S., Demange N., Gaspin C., Lavie M., Moisan A., Robert C., Saurin W., Schiex T., Siguier P., Thebault P., Whalen M., Wincker P., Levy M., Weissenbach J. and Boucher C.A.,
  
  Genome sequence of the plant pathogen Ralstonia solanacearum. Nature 415:497-502 (2002).




• Starling A., Rocco P., Passos-Bueno M.R., Hazan J., Marie S.K. and Zatz M.,
  
  Autosomal dominant (AD) pure spastic paraplegia (HSP) linked to locus SPG4 affects almost exclusively males in a large pedigree. J. Med. Genet. 39:e77 (2002).




• Zdobnov E.M., von Mering C., Letunic I., Torrents D., Suyama M., Copley R.R., Christophides G.K., Thomasova D., Holt R.A., Subramanian G.M., Mueller H.M., Dimopoulos G., Law J.H., Wells M.A., Birney E., Charlab R., Halpern A.L., Kokoza E., Kraft C.L., Lai Z., Lewis S., Louis C., Barillas-Mury C., Nusskern D., Rubin G.M., Salzberg S.L., Sutton G.G., Topalis P., Wides R., Wincker P., Yandell M., Collins F.H., Ribeiro J., Gelbart W.M., Kafatos F.C. and Bork P.,
  
  Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science 298:149-159 (2002).

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2003

• Abifadel M., Varret M., Rabes J.P., Allard D., Ouguerram K., Devillers M., Cruaud C., Benjannet S., Wickham L., Erlich D., Derre A., Villeger L., Farnier M., Beucler I., Bruckert E., Chambaz J., Chanu B., Lecerf J.M., Luc G., Moulin P., Weissenbach J., Prat A., Krempf M., Junien C., Seidah N.G. and Boileau C.,
  
  Mutations in PCSK9 cause autosomal dominant hypercholesterolemia. Nat. Genet. 34:154-156 (2003).




• Bocs S., Cruveiller S., Vallenet D., Nuel G. and Médigue C.,
  
  AMIGene: Annotation of MIcrobial Genes. Nucl. Acid. Res. 31:3723-3726 (2003).




• Bouneau L., Fischer C., Ozouf-Costaz C., Froschauer A., Jaillon O., Coutanceau J.P., Korting C., Weissenbach J., Bernot A. and Volff J.N.,
  
  An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis. Genome Res. 1686-1694 (2003).




• Bouneau L., Lardier G., Fischer C., Ronsin M., Weissenbach J. and Bernot A.,
  
  Analysis of 148 kb of genomic DNA of Tetraodon nigroviridis covering an amylase gene family. DNA Seq. 14:1-13 (2003).




• Chabardes-Garonne D., Mejean A., Aude J.C., Cheval L., Di Stefano A., Gaillard M.C., Imbert-Teboul M., Wittner M., Balian C., Anthouard V., Robert C., Segurens B., Wincker P., Weissenbach J., Doucet A. and Elalouf J.M.,
  
  A panoramic view of gene expression in the human kidney. Proc. Natl. Acad. Sci. USA 100:13710-13715 (2003).




• Charvin D., Cifuentes-Diaz C., Fonknechten N., Joshi V., Hazan J., Melki J. and Betuing S.,
  
  Mutations of SPG4 are responsible for a loss of function of spastin, an abundant neuronal protein localized in the nucleus. Hum. Mol. Genet. 12:71-78 (2003).




• Chouari R., Le Paslier D., Daegelen P., Ginestet P., Weissenbach J. and Sghir A.,
  
  Molecular evidence for novel planctomycete diversity in a municipal wastewater treatment plant. Appl. Environ. Microbiol. 69:7354-7363 (2003).




• Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O., Poch O., Prieur D., Querellou J., Ripp R., Thierry J.C., Van der Oost J., Weissenbach J., Zivanovic Y. and Forterre P.,
  
  An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol. Microbiol. 47:1495-1512 (2003).




• Cruveiller S., Jabbari K., Clay O. and Bernardi G.,
  
  Compositional features of eukaryotic genomes for checking predicted genes. Brief Bioinform. 4:43-52 (2003).




• Dufresne A., Salanoubat M., Partensky F., Artiguenave F., Axmann I.M., Barbe V., Duprat S., Galperin M.Y., Koonin E.V., Le Gall F., Makarova K.S., Ostrowski M., Oztas S., Robert C., Rogozin I.B., Scanlan D.J., Tandeau de Marsac N., Weissenbach J., Wincker P., Wolf Y.I. and Hess W.R.,
  
  Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc. Natl. Acad. Sci. USA 100:10020-10025 (2003).




• Heilig R., Eckenberg R., Petit J.L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., de Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., Du H., Pepin K., Artiguenave F., Robert C., Cruaud C., Brüls T., Jaillon O., Friedlander L., Samson G., Brottier P., Cure S., Segurens B., Aniere F., Samain S., Crespeau H., Abbasi N., Aiach N., Boscus D., Dickhoff R., Dors M., Dubois I., Friedman C., Gouyvenoux M., James R., Mairey-Estrada B., Mangenot S., Martins N., Menard M., Oztas S., Ratcliffe A., Shaffer T., Trask B., Vacherie B., Bellemere C., Belser C., Besnard-Gonnet M., Bartol-Mavel D., Boutard M., Briez-Silla S., Combette S., Dufosse-Laurent V., Ferron C., Lechaplais C., Louesse C., Muselet D., Magdelenat G., Pateau E., Petit E., Sirvain-Trukniewicz P., Trybou A., Vega-Czarny N., Bataille E., Bluet E., Bordelais I., Dubois M., Dumont C., Guerin T., Haffray S., Hammadi R., Muanga J., Pellouin V., Robert D., Wunderle E., Gauguet G., Roy A., Sainte-Marthe L., Verdier J., Verdier-Discala C., Hillier L., Fulton L., McPherson J., Matsuda F., Wilson R., Scarpelli C., Gyapay G., Wincker P., Saurin W., Quétier F., Waterston R., Hood L. and Weissenbach J.,
  
  The DNA sequence and analysis of human chromosome 14. Nature 421:601-607 (2003).




• Jaillon O., Dossat C., Eckenberg R., Eiglmeier K., Ségurens B., Aury J.M., Roth C.W., Scarpelli C., Brey P.T., Weissenbach J. and Wincker P.,
  
  Assessing the Drosophila melanogaster and Anopheles gambiae genome anotations using genome-wide sequence comparisons. Genome Res. 1595-1599 (2003).




• Jetten M.S., Sliekers O., Kuypers M., Dalsgaard T., Van Niftrik L., Cirpus I., Van De Pas-Schoonen K., Lavik G., Thamdrup B., Le Paslier D., Op Den Camp H.J., Hulth S., Nielsen L.P., Abma W., Third K., Engstrom P., Kuenen J.G., Jorgensen B.B., Canfield D.E., Sinninghe Damste J.S., Revsbech N.P., Fuerst J., Weissenbach J., Wagner M., Schmidt I., Schmid M. and Strous M.,
  
  Anaerobic ammonium oxidation by marine and freshwater planctomycete-like bacteria. Appl. Microbiol. Biotechnol. 63:107-114 (2003).




• Jobard F., Bouadjar B., Caux F., Hadj-Rabia S., Has C., Matsuda F., Weissenbach J., Lathrop M., Prud'homme J.F. and Fischer J.,
  
  Identification of mutations in a new gene encoding a FERM family protein with a pleckstrin homology domain in Kindler syndrome. Hum. Mol. Genet. 12:925-935 (2003).




• Koszul R., Malpertuy A., Frangeul L., Bouchier C., Wincker P., Thierry A., Duthoy S., Ferris S., Hennequin C. and Dujon B.,
  
  The complete mitochondrial genome sequence of the pathogenic yeast Candida (Torulopsis) glabrata. FEBS Lett. 534:39-48 (2003).




• Lefevre C., Audebert S., Jobard F., Bouadjar B., Lakhdar H., Boughdene-Stambouli O., Blanchet-Bardon C., Heilig R., Foglio M., Weissenbach J., Lathrop M., Prud'homme J.F. and Fischer J.,
  
  Mutations in the transporter ABCA12 are associated with lamellar ichthyosis type 2. Hum. Mol. Genet. 12:2369-2378 (2003).




• Lutfalla G., Roest Crollius H., Stange-Thomann N., Jaillon O., Mogensen K. and Monneron D.,
  
  Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: The class II cytokine receptors and their ligands in mammals and fish. BMC Genomics 4:29 (2003).




• Roth C.W., Holm I., Graille M., Dehoux P., Rzhetsky A., Wincker P., Weissenbach J. and Brey P.T.,
  
  Identification of the Anopheles gambiae ATP-binding cassette transporter superfamily genes. Mol. Cells 15:150-158 (2003).




• Volff J.N., Bouneau L., Ozouf-Costaz C. and Fischer C.,
  
  Diversity of retrotransposable elements in compact pufferfish genomes. Trends Genet. 19:674-678 (2003).

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2004

• Abel A., Fonknechten N., Hofer A., Durr A., Cruaud C., Voit T., Weissenbach J., Brice A., Klimpe S., Auburger G. and Hazan J.,
  
  Early onset autosomal dominant spastic paraplegia caused by novel mutations in SPG3A. Neurogenetics (2004).




• Barbe V., Vallenet D., Fonknechten N., Kreimeyer A., Oztas S., Labarre L., Cruveiller S., Robert C., Duprat S., Wincker P., Ornston L.N., Weissenbach J., Marlière P., Cohen G.N. and Médigue C.,
  
  Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Res. 32:5766-5779 (2004).




• Castelli V., Aury J.M., Jaillon O., Wincker P., Clepet C., Menard M., Cruaud C., Quétier F., Scarpelli C., Schächter V., Temple G., Caboche M., Weissenbach J. and Salanoubat M.,
  
  Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation. Genome Res. 14:406-413 (2004).




• Chabrier N., Chiaverini M., Danos V., Fages F. and Schächter V.,
  
  Modeling and querying biochemical interaction networks Theoretical Computer Science 325: 25-44 (2004).




• Chain P.S., Carniel E., Larimer F.W., Lamerdin J., Stoutland P.O., Regala W.M., Georgescu A.M., Vergez L.M., Land M.L, Motin V.L., Brubaker R.R., Fowler J., Hinnebusch J., Marceau M., Médigue C., Simonet M., Chenal-Francisque V., Souza B., Dacheux D., Elliott J.M., Derbise A., Hauser L.J. and Garcia E.,
  
  Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc. Natl. Acad. Sci. USA. 101: 13826-31 (2004).




• Duchaud E., Rusniok C., Frangeul L., Buchrieser C., Givaudan A., Taourit S., Bocs S., Boursaux-Eude C., Chandler M., Charles J.F., Dassa E., Derose R., Derzelle S., Freyssinet G., Gaudriault S., Médigue C., Lanois A., Powell K., Siguier P., Vincent R., Wingate V., Zouine M., Glaser P., Boemare N., Danchin A. and Kunst F.,
  
  The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nature Biotechnology 11: 1307-1313 (2003).




• Dujon B., Sherman D., Fischer G., Durrens P., Casaregola S., Lafontaine I., De Montigny J., Marck C., Neuveglise C., Talla E., Goffard N., Frangeul L., Aigle M., Anthouard V., Babour A., Barbe V., Barnay S., Blanchin S., Beckerich J.M., Beyne E., Bleykasten C., Boisrame A., Boyer J., Cattolico L., Confanioleri F., De Daruvar A., Despons L., Fabre E., Fairhead C., Ferry-Dumazet H., Groppi A., Hantraye F., Hennequin C., Jauniaux N., Joyet P., Kachouri R., Kerrest A., Koszul R., Lemaire M., Lesur I., Ma L., Muller H., Nicaud J.M., Nikolski M., Oztas S., Ozier-Kalogeropoulos O., Pellenz S., Potier S., Richard G.F., Straub M.L., Suleau A., Swennen D., Tekaia F., Wesolowski-Louvel M., Westhof E., Wirth B., Zeniou-Meyer M., Zivanovic I., Bolotin-Fukuhara M., Thierry A., Bouchier C., Caudron B., Scarpelli C., Gaillardin C., Weissenbach J., Wincker P. and Souciet J.L.,
  
  Genome evolution in yeasts. Nature 430:35-44 (2004).




• Fischer C., Bouneau L., Coutanceau J.P., Weissenbach J., Volff J.N. and Ozouf-Costaz C.,
  
  Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis. Gene 336:175-183 (2004).




• International Human Genome Sequencing Consortium (Heilig R., Eckenberg R., Petit J.L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., de Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Artiguenave F., Robert C., Cruaud C., Brüls T., Brottier P., Ségurens B., Samain S., Crespeau H., Scarpelli C., Gyapay G., Wincker P., Saurin W., Weissenbach J. and Matsuda F. for Genoscope),
  
  Finishing the euchromatic sequence of the human genome. Nature 431:931-945 (2004).




• Jabbari K., Cruveiller S., Clay O., Le Saux J. and Bernardi G.,
  
  The new genes of rice: a closer look. Trends Plant Sci. 9:281-285 (2004)




• Jaillon O., Aury J.M., Brunet F., Petit J.L., Stange-Thomann N., Mauceli E., Bouneau L., Fischer C., Ozouf-Costaz C., Bernot A., Nicaud S., Jaffe D., Fisher S., Lutfalla G., Dossat C., Segurens B., Da Silva C., Salanoubat M., Levy M., Boudet N., Castellano S., Anthouard V., Jubin C., Castelli V., Katinka M.D., Vacherie B., Biemont C., Skalli Z., Cattolico L., Poulain J., de Berardinis V., Cruaud C., Duprat S., Brottier P., Coutanceau J.P., Gouzy J., Parra G., Lardier G., Chapple C., McKernan K.J., McEwan P., Bosak S., Kellis M., Volff J.N., Guigo R., Zody M.C., Mesirov J., Lindblad-Toh K., Birren B., Nusbaum C., Kahn D., Robinson-Rechavi M., Laudet V., Schächter V., Quétier F., Saurin W., Scarpelli C., Wincker P., Lander E.S., Weissenbach J. and Roest Crollius H.,
  
  Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431:946-957 (2004).




• Penet S., Marchal R., Sghir A. and Monot F.,
  
  Biodegradation of hydrocarbon cuts used for diesel oil formulation. Appl. Microbiol. Biotechnol. (2004).




• Porcel B.M., Delfour O., Castelli V., de Berardinis V., Friedlander L., Cruaud C., Ureta-Vidal A., Scarpelli C., Wincker P., Schächter V., Saurin W., Gyapay G., Salanoubat M. and Weissenbach J.,
  
  Numerous novel annotations of the human genome sequence supported by a 5'-end-enriched cDNA collection. Genome Res. 14:463-471 (2004).




• Seo H.C., Edvardsen R.B., Maeland A.D., Bjordal M., Jensen M.F., Hansen A., Flaat M., Weissenbach J., Lehrach H., Wincker P., Reinhardt R. and Chourrout D.,
  
  Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica. Nature 431:67-71 (2004).




• Weissenbach J.,
  
  Genome sequencing: differences with the relatives. Nature 429:353-355 (2004).




• Zagulski M., Nowak J.K., Le Mouel A., Nowacki M., Migdalski A., Gromadka R., Noel B., Blanc I., Dessen P., Wincker P., Keller A.M., Cohen J., Meyer E and Sperling L.,
  
  High coding density on the largest Paramecium tetraurelia somatic chromosome. Curr. Biol. 14:1397-1404 (2004).

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