MicroScope Platform Overview
- Overview of the annotation editor
- Annotation Rules
- BLAST results
- Compositional features
- E. coli K12
- B. subtilis
- MaGe/Curated annotations
- Syntonome / Syntonome RefSeq
- Similarities SwissProt / TrEMBL
- Predicted MetaCyc Pathways
MicroScope - Tutorial » Transcriptomics » RNAseq Projects » Integrative Genomics Browser
Integrative Genomics Browser
Integrative Genomics Browser (IGV) is a third party software that enables the visualization of the coverage of the reference genome by transcripts and to qualitatively compare coverage for various experimental conditions.
Section #1 contains genome annotations. Colors corresponding to a specific genomic object are:
To see genome coverage, users can load data in the drop down menu “File/Load from Server”.
The, the coverage is visible :
Users can also organize the display :
Users can enlarge the view by drag’n dropping the mouse on the area of interest.
It is possible to zoom in to see gene sequence and translation.