MicroScope - Tutorial   »   MicroScope Platform Overview   »   Interface   »   Old » New Interface


The MicroScope interface changed on 3rd June 2010. Here are the tool correspondences between the old interface (developped and maintained between 2002 and May 2010) and the new one.

What about the old Viewer interface ?

(JPG)

The corresponding tools are available by following this path in the new interface:

ITEM # OLD INTERFACE BUTTON NEW INTERFACE
2 Export data Export Download Data
3 Artemis Region MaGe Genome Browser ( Menu Bar below Synteny Maps )
4 Artemis All MaGe Genome Browser ( Menu Bar below Synteny Maps )
5 CGView Genomic Tools Circular Genome Viewer
6 LinePlot Comparative Genomics LinePlot
7 Kegg Metabolism Kegg
8 BioCyc Metabolism MicroCyc
10 Gene Cart User Panel Gene Carts
11 Options MaGe Genome Browser Options OR User Panel Display Preferences

What about the old Genome Overview interface?

(JPG)

The corresponding tools are available by following this path in the new interface:

ITEM # OLD INTERFACE BUTTON NEW INTERFACE
1 Overview Genomic Tools Genome Overview (upper part)
2 Expert Annotation Summary MaGe Expert Annotations Summary
3 General Annotation Summary Genomic Tools Genome Overview (lower part)
4 COG Automatic Classification Genomic Tools COG Automatic Classification
5 PkGDB Synteny Statistics Comparative Genomics PkGDB Synteny Statistics
6 RefSeq Synteny Statistics Comparative Genomics RefSeq Synteny Statistics
7 Overlapping CDS MaGe Overlapping CDS
8 Identical Gene Names MaGe Identical Gene Names
9 EC number Update MaGe EC number Update (not available for guests)

What about the old Explore interface?

(JPG)

The corresponding tools are available by following this path in the new interface:

ITEM # OLD INTERFACE BUTTON NEW INTERFACE
1 KeyWords Searches Search by Keywords
2 Blast / Pattern Search Searches Blast & Pattern Searches
3 PhyloProfile Synteny Comparative Genomics Genes Phyloprofile Organism OR Comparative Genomics Genes Phyloprofile Replicon
4 Fusion / Fission Comparative Genomics Fusion / Fission
5 Tandem Duplications Genomic Tools Tandem Duplications
6 Pathways Synteny Metabolism Pathways Synteny
7 Minimal Gene Set Genomic Tools Minimal Gene Set
8 Label Mapping: Old > New MaGe Old New Labels (not available for guests)
9 RGP Finder Comparative Genomics Genomic Islands
10 Metabolic Profiles Metabolism Metabolic Profiles
11 SNPs / InDels Experimental Data Evolution Projects