MicroScope Platform Overview
- Overview of the annotation editor
- Annotation Rules
- BLAST results
- Compositional features
- E. coli K12
- B. subtilis
- MaGe/Curated annotations
- Syntonome / Syntonome RefSeq
- Similarities SwissProt / TrEMBL
- Predicted MetaCyc Pathways
MicroScope - Tutorial » Variant Discovery » Evolution Projects » Graphical Analysis
What is the aim of the Graphical Analysis tool ?
To visualize the distribution of a specific clone’s mutations along the circular representation of a reference genome.
And to detect potential hot spots of mutations.
How to use this tool ?
This tool is based on the Java applet CGView.
Trick: You can decide which Genomic Objects (GOs) and corresponding labels will be displayed on the circular map thanks to the two selection lists situated next to the CGView button.
What can you see on the graphical representation ?
Circles display (from the outside):
Tip1: Each GO label encompasses a link to the information form of the Genomic Object considered.