MicroScope Platform Overview
- Overview of the annotation editor
- Annotation Rules
- BLAST results
- Compositional features
- E. coli K12
- B. subtilis
- MaGe/Curated annotations
- Syntonome / Syntonome RefSeq
- Similarities SwissProt / TrEMBL
- Predicted MetaCyc Pathways
MicroScope - Tutorial » Metabolism » Metabolic Profile
How to access to the Metabolic Profile Tool ?
Metabolic Profile tool is accessible in the Metabolism section of the main navigation menu.
What is the usefulness of this tool ?
This method allows to:
This comparison is based on the computation of a ’pathway completion’ value, i.e the ratio between the number of reactions for pathway X in a given organism and the total number of reactions of pathway X defined in the MetaCyc or KEGG databases.
How to use this tool ?
The With pseudogenes option allows to include pseudogenes in the analysis
Use the Pathway Completion box to restrict the analysis to pathways with a completion higher than a threshold
How to read the result table ?
Clicking on a metabolic pathway in the result table allows to access to the detailled reaction table of this pathway. This table summarizes for each selected organism the presence/absence of genes coding for enzymes necessary for each reaction of the pathway.
The link below the table allows access to the BioCyc or KEGG comparison metabolic maps.