MicroScope - Tutorial   »   MaGe   »   Gene Annotation Editor   »   MaGe/Curated annotations


This section indicates the best BLAST hits obtained with other Genomic Objects from PkGDB which have been manually annotated/curated by other MaGe users.

How to read the result table ?

  • Label: Label of the protein. If you click on the label, you access to the Gene annotation window
  • Synteny: If you click on the magnyfying glass, it opens a synton visualisation window
  • Organism: Organism name. If you click on the name, you access to the sequences on the NCBI website
  • Gene: Gene name of the protein
  • Product: Product description of the protein
  • maxLrap : see BLAST results
  • minLrap : see BLAST results
  • Ident%: Percentage of identity between the studied protein and the database protein
  • Eval: Evalue of the BLAST result
  • OrderQ : see BLAST results
  • OrderB : see BLAST results
  • Roles: Funtional categories associated with the protein using the Roles functional classification
  • ECnumber: EC number associated with the protein, if any
  • Localization: Cellular localisation of the protein
  • BioProcess: Funtional categories associated with the protein using the BioProcess functional classification
  • Product type: Description of the product type of the protein
  • PubMedId: References linked to the annotation of the protein
  • Class: Confidence class of the annotation
  • BeginQ: Start of the alignment for the studied protein
  • EndQ: End of the alignment for the studied protein
  • LengthQ: Length the studied protein
  • BeginB: Start of the alignment for the database protein
  • EndB: End of the alignment for the database protein
  • LengthB: Length of the database protein