MicroScope Platform OverviewMaGe
- Overview of the annotation editor- Annotation Rules- BLAST results- Start- Compositional features- Duplications- E. coli K12- B. subtilis- Genomes/Project- MaGe/Curated annotations- Syntonome / Syntonome RefSeq- HAMAP- Similarities SwissProt / TrEMBL- PRIAM- Predicted MetaCyc Pathways- COGnitor- FigFam- PsortB- InterProScan- SignalP- TMhmmGenomic Tools
Comparative Genomics
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MicroScope - Tutorial » Genomic Tools » Circular Genome View What is Circular Genome View ?CGView is a Java package which allows to produce high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a mean of generating visual output suitable for the web. Starting with information of one genome and the features to visualize, CGView converts the input into a graphical map (PNG, JPG, or Scalable Vector Graphics format) and completes it with labels, a title, legends, and footnotes. More: http://wishart.biology.ualberta.ca/cgview/index.html How to use the Circular Genome View ?When you select the Circular Genome View functionality you obtain a global circular map of the selected sequence. Circles display (from the outside):
Genes displayed in (2) and (3) are color-coded according different categories:
In addition to the default full view map, the program can generate a series of hyperlinked maps showing expanded views. You can use the CG View toolbar to navigate into the circular map. ![]() Only the 5 first buttons are active on the toolbar:
If you click on a gene name/label it open the corresponding Gene window giving you access the full annotation of the gene. |
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