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TAMARA - Transcriptome Analyses based on MAssive sequencing of RnAs

RNAseq Projects

Mesorhizobium Metallidurans (Maynaud et al, 2013, BMC Genomics 14(1):292)
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 3
  • Organism: Mesorhizobium sp. STM4661
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 3
  • Organism: Mesorhizobium metallidurans STM2683
Helicobacter pylori public data (Sharma et al, 2010, Nature 464:250-255)
  • Experiment Type: dir mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 5
  • Organism: Helicobacter pylori 26695
Salmonella Typhi public data (Perkins et al, 2009, PLoS Genetics 5(7):e1000569)
  • Experiment Type: dir mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 6
  • Organism: Salmonella enterica subsp. enterica serovar Typhi Ty2
Campylobacter jejuni Public Data (Chaudhuri et al., 2011, Microbiology 157:2922-2932)
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 4
  • Organism: Campylobacter jejuni subsp. jejuni NCTC 11168
Sufolobus solfataricus P2 Public Data (Wurtzel et al., 2010, Genome Res. 20(1):133-41)
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 5
  • Organism: Sulfolobus solfataricus P2
  • Experiment Type: TSS (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 3
  • Organism: Sulfolobus solfataricus P2
Acinetobacter baumannii ATCC 17978 (Chang et al, 2014, BMC Genomics 15:815)
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 3
  • Organism: Acinetobacter baumannii ATCC 17978
Helicobacter pylori public data (Sharma et al, 2010, Nature 464:250-255)
Mapping Overview Raw Read Count Analysis IGV

Mycobacterium tuberculosis (Eldholm et al. Genome Biology 2014, 15:490)
Mapping Overview Raw Read Count Analysis IGV

TAM_Ddeserti_VCD115 (De Groot et al, 2014, Genome Biol Evol 6:932 - Blanchard et al, 2017, MicrobiologyOpen 00:e477)
Mapping Overview Raw Read Count Analysis IGV

Acinetobacter baumannii ATCC 17978 (Chang et al, 2014, BMC Genomics 15:815)
Mapping Overview Raw Read Count Analysis IGV