MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
Z2763	CDS	chbG	2491090	2491848	759	-1	chitin disaccharide deacetylase	1	automatic/finished	COMMON	no	0.5020	0.5059	0.39	28015.86	5.25
Z2764	CDS	chbF	2491861	2493213	1353	-1	monoacetylchitobiose-6-phosphate hydrolase	1	automatic/finished	COMMON	no	0.4701	0.4967	0.52	50422.30	5.91
Z2765	CDS	chbR	2493319	2494161	843	-1	DNA-binding transcriptional dual regulator ChbR	1	automatic/finished	COMMON	no	0.4140	0.4698	0.42	32996.52	8.44
Z2766	CDS	chbA	2494169	2494519	351	-3	N,N'-diacetylchitobiose-specific PTS enzyme IIA component	1	automatic/finished	COMMON	no	0.4900	0.5299	0.48	12747.22	4.87
Z2767	CDS	chbC	2494570	2495928	1359	-1	N,N'-diacetylchitobiose-specific PTS enzyme IIC component	1	automatic/finished	COMMON	no	0.4908	0.5430	0.48	48358.24	6.49
Z2768	CDS	chbB	2496013	2496333	321	-1	N,N'-diacetylchitobiose-specific PTS enzyme IIB component	3	automatic/finished	COMMON	no	0.4393	0.4019	0.49	11426.04	8.02
Z2769	CDS	osmE	2496633	2496971	339	-2	osmotically-inducible lipoprotein OsmE	2	automatic/finished	COMMON	no	0.4926	0.4779	0.59	12020.16	7.89
Z2770	CDS	nadE	2497173	2498000	828	+3	NAD synthetase, NH3-dependent	1	automatic/finished	COMMON	no	0.4915	0.4928	0.49	30682.68	5.42
Z2771	CDS	cho	2498230	2499117	888	+1	endonuclease of nucleotide excision repair	1	automatic/finished	COMMON	no	0.5158	0.4899	0.35	33691.60	9.07
Z2774	CDS	ves	2499077	2499715	639	-3	HutD family protein Ves	1	automatic/finished	COMMON	no	0.5117	0.5869	0.45	23749.24	7.13
Z2775	CDS	spy	2499855	2500340	486	-2	ATP-independent periplasmic chaperone	2	automatic/finished	COMMON	no	0.5062	0.5494	0.75	18170.29	9.66
Z2776	CDS	astE	2500670	2501638	969	-3	succinylglutamate desuccinylase	1	automatic/finished	COMMON	no	0.5397	0.5604	0.41	35827.92	6.31
Z2777	CDS	astB	2501631	2502974	1344	-2	N-succinylarginine dihydrolase	1	automatic/finished	COMMON	no	0.5506	0.5871	0.43	49322.68	6.03
Z2778	CDS	astD	2502971	2504449	1479	-3	aldehyde dehydrogenase	1	automatic/finished	COMMON	no	0.5828	0.6105	0.43	52983.18	5.73
Z2779	CDS	astA	2504446	2505480	1035	-1	arginine N-succinyltransferase	1	automatic/finished	COMMON	no	0.5565	0.6348	0.47	38454.43	6.03
Z2780	CDS	astC	2505477	2506697	1221	-2	succinylornithine transaminase	1	automatic/finished	COMMON	no	0.5405	0.5553	0.52	43678.60	5.72

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

Z2763

CDS

chbG

2491090

2491848

759

-1

chitin disaccharide deacetylase

automatic/finished

COMMON

0.5020

0.5059

0.39

28015.86

5.25

Z2764

CDS

chbF

2491861

2493213

1353

-1

monoacetylchitobiose-6-phosphate hydrolase

automatic/finished

COMMON

0.4701

0.4967

0.52

50422.30

5.91

Z2765

CDS

chbR

2493319

2494161

843

-1

DNA-binding transcriptional dual regulator ChbR

automatic/finished

COMMON

0.4140

0.4698

0.42

32996.52

8.44

Z2766

CDS

chbA

2494169

2494519

351

-3

N,N'-diacetylchitobiose-specific PTS enzyme IIA component

automatic/finished

COMMON

0.4900

0.5299

0.48

12747.22

4.87

Z2767

CDS

chbC

2494570

2495928

1359

-1

N,N'-diacetylchitobiose-specific PTS enzyme IIC component

automatic/finished

COMMON

0.4908

0.5430

0.48

48358.24

6.49

Z2768

CDS

chbB

2496013

2496333

321

-1

N,N'-diacetylchitobiose-specific PTS enzyme IIB component

automatic/finished

COMMON

0.4393

0.4019

0.49

11426.04

8.02

Z2769

CDS

osmE

2496633

2496971

339

-2

osmotically-inducible lipoprotein OsmE

automatic/finished

COMMON

0.4926

0.4779

0.59

12020.16

7.89

Z2770

CDS

nadE

2497173

2498000

828

NAD synthetase, NH3-dependent

automatic/finished

COMMON

0.4915

0.4928

0.49

30682.68

5.42

Z2771

CDS

cho

2498230

2499117

888

endonuclease of nucleotide excision repair

automatic/finished

COMMON

0.5158

0.4899

0.35

33691.60

9.07

Z2774

CDS

ves

2499077

2499715

639

-3

HutD family protein Ves

automatic/finished

COMMON

0.5117

0.5869

0.45

23749.24

7.13

Z2775

CDS

spy

2499855

2500340

486

-2

ATP-independent periplasmic chaperone

automatic/finished

COMMON

0.5062

0.5494

0.75

18170.29

9.66

Z2776

CDS

astE

2500670

2501638

969

-3

succinylglutamate desuccinylase

automatic/finished

COMMON

0.5397

0.5604

0.41

35827.92

6.31

Z2777

CDS

astB

2501631

2502974

1344

-2

N-succinylarginine dihydrolase

automatic/finished

COMMON

0.5506

0.5871

0.43

49322.68

6.03

Z2778

CDS

astD

2502971

2504449

1479

-3

aldehyde dehydrogenase

automatic/finished

COMMON

0.5828

0.6105

0.43

52983.18

5.73

Z2779

CDS

astA

2504446

2505480

1035

-1

arginine N-succinyltransferase

automatic/finished

COMMON

0.5565

0.6348

0.47

38454.43

6.03

Z2780

CDS

astC

2505477

2506697

1221

-2

succinylornithine transaminase

automatic/finished

COMMON

0.5405

0.5553

0.52

43678.60

5.72

Sequence	Id	Begin	End	Comments
	RPTR1259104	2498048	2498080	1 repeats

Sequence

Begin

End

Comments

RPTR1259104

2498048

2498080

1 repeats

Escherichia coli O157:H7 EDL933 - chromosome NC_002655.2 Public

(sequence length : 5528445 bases)