MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
Z2160	CDS	dcp	1935195	1937240	2046	+3	peptidyl-dipeptidase Dcp	1	automatic/finished	COMMON	no	0.4990	0.4795	0.45	77447.64	5.35
Z2161	CDS	ydeJ	1937285	1937803	519	-3	Protein YdeJ	1	automatic/finished	COMMON	no	0.4990	0.4740	0.44	18259.00	4.85
Z2162	CDS	ydeI	1938079	1938471	393	+1	BOF family protein YdeI	1	automatic/finished	COMMON	no	0.4631	0.3969	0.45	14133.46	5.75
Z2163	CDS	dgcZ	1938726	1939616	891	+3	diguanylate cyclase DgcZ	1	automatic/finished	COMMON	no	0.4444	0.4478	0.37	33981.34	5.48
ECO571966	CDS	mgtS	1939835	1939930	96	-3	small protein MgtS	3	automatic/finished	NEW	no	0.3750	0.4375	0.42	3523.03	5.21
Z2164	CDS		1940038	1941021	984	-1	putative transcriptional regulator	1	automatic/finished	COMMON	no	0.5061	0.4817	0.36	36605.57	9.16
Z2165	CDS		1941104	1941499	396	+2	Rhodanese domain-containing protein	1	automatic/finished	COMMON	no	0.5177	0.4621	0.40	14556.01	5.25
Z2166	CDS	ydeE	1941540	1942727	1188	-2	dipeptide exporter	1	automatic/finished	COMMON	no	0.4966	0.5758	0.41	42590.07	9.47
Z2168	CDS	eamA	1943021	1943821	801	+2	cysteine/O-acetylserine exporter EamA	1	automatic/finished	COMMON	no	0.5006	0.5468	0.43	28631.32	10.00
Z2169	CDS	marB	1943852	1944070	219	-3	multiple antibiotic resistance protein	1	automatic/finished	COMMON	no	0.5205	0.5068	0.42	7572.30	4.23
Z2170	CDS	marA	1944102	1944491	390	-2	DNA-binding transcriptional dual regulator MarA	1	automatic/finished	COMMON	no	0.4564	0.5538	0.45	15415.94	9.36
Z2171	CDS	marR	1944505	1944882	378	-1	DNA-binding transcriptional repressor MarR	1	automatic/finished	COMMON	no	0.5000	0.5476	0.49	13901.85	8.65
Z2172	CDS	marC	1945151	1945816	666	+2	inner membrane protein MarC	1	automatic/finished	COMMON	no	0.5045	0.5631	0.44	23537.13	8.08
Z2173	CDS	ydeA	1945841	1947031	1191	-3	L-arabinose exporter	1	automatic/finished	COMMON	no	0.5105	0.5819	0.37	42566.48	9.86
Z2175	fCDS	yneK	1947183	1947452	270	-2	fragment of protein YneK (part 2)	3	automatic/finished	COMMON	pseudo	0.3963	0.3889	0.34	10312.62	9.46
Z2176	fCDS	yneK	1947510	1948298	789	-2	fragment of protein YneK (part 1)	3	automatic/finished	COMMON	pseudo	0.3929	0.3916	0.31	30239.50	6.08
Z2177	CDS	yneJ	1948376	1949257	882	-3	putative LysR-type DNA-binding transcriptional regulator YneJ	1	automatic/finished	COMMON	no	0.5329	0.5068	0.43	32401.75	6.07
Z2178	CDS	sad	1949334	1950746	1413	+3	NAD(+)-dependent succinate semialdehyde dehydrogenase	1	automatic/finished	COMMON	no	0.5223	0.4841	0.50	50669.88	5.43
Z2179	CDS	glsB	1950810	1951736	927	+3	glutaminase 2	1	automatic/finished	COMMON	no	0.5156	0.5178	0.44	33482.12	5.99

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

Z2160

CDS

dcp

1935195

1937240

2046

peptidyl-dipeptidase Dcp

automatic/finished

COMMON

0.4990

0.4795

0.45

77447.64

5.35

Z2161

CDS

ydeJ

1937285

1937803

519

-3

Protein YdeJ

automatic/finished

COMMON

0.4990

0.4740

0.44

18259.00

4.85

Z2162

CDS

ydeI

1938079

1938471

393

BOF family protein YdeI

automatic/finished

COMMON

0.4631

0.3969

0.45

14133.46

5.75

Z2163

CDS

dgcZ

1938726

1939616

891

diguanylate cyclase DgcZ

automatic/finished

COMMON

0.4444

0.4478

0.37

33981.34

5.48

ECO571966

CDS

mgtS

1939835

1939930

-3

small protein MgtS

automatic/finished

NEW

0.3750

0.4375

0.42

3523.03

5.21

Z2164

CDS

1940038

1941021

984

-1

putative transcriptional regulator

automatic/finished

COMMON

0.5061

0.4817

0.36

36605.57

9.16

Z2165

CDS

1941104

1941499

396

Rhodanese domain-containing protein

automatic/finished

COMMON

0.5177

0.4621

0.40

14556.01

5.25

Z2166

CDS

ydeE

1941540

1942727

1188

-2

dipeptide exporter

automatic/finished

COMMON

0.4966

0.5758

0.41

42590.07

9.47

Z2168

CDS

eamA

1943021

1943821

801

cysteine/O-acetylserine exporter EamA

automatic/finished

COMMON

0.5006

0.5468

0.43

28631.32

10.00

Z2169

CDS

marB

1943852

1944070

219

-3

multiple antibiotic resistance protein

automatic/finished

COMMON

0.5205

0.5068

0.42

7572.30

4.23

Z2170

CDS

marA

1944102

1944491

390

-2

DNA-binding transcriptional dual regulator MarA

automatic/finished

COMMON

0.4564

0.5538

0.45

15415.94

9.36

Z2171

CDS

marR

1944505

1944882

378

-1

DNA-binding transcriptional repressor MarR

automatic/finished

COMMON

0.5000

0.5476

0.49

13901.85

8.65

Z2172

CDS

marC

1945151

1945816

666

inner membrane protein MarC

automatic/finished

COMMON

0.5045

0.5631

0.44

23537.13

8.08

Z2173

CDS

ydeA

1945841

1947031

1191

-3

L-arabinose exporter

automatic/finished

COMMON

0.5105

0.5819

0.37

42566.48

9.86

Z2175

fCDS

yneK

1947183

1947452

270

-2

fragment of protein YneK (part 2)

automatic/finished

COMMON

pseudo

0.3963

0.3889

0.34

10312.62

9.46

Z2176

fCDS

yneK

1947510

1948298

789

-2

fragment of protein YneK (part 1)

automatic/finished

COMMON

pseudo

0.3929

0.3916

0.31

30239.50

6.08

Z2177

CDS

yneJ

1948376

1949257

882

-3

putative LysR-type DNA-binding transcriptional regulator YneJ

automatic/finished

COMMON

0.5329

0.5068

0.43

32401.75

6.07

Z2178

CDS

sad

1949334

1950746

1413

NAD(+)-dependent succinate semialdehyde dehydrogenase

automatic/finished

COMMON

0.5223

0.4841

0.50

50669.88

5.43

Z2179

CDS

glsB

1950810

1951736

927

glutaminase 2

automatic/finished

COMMON

0.5156

0.5178

0.44

33482.12

5.99

Escherichia coli O157:H7 EDL933 - chromosome NC_002655.2 Public

(sequence length : 5528445 bases)