MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
Z1978	CDS	prs	1798216	1799163	948	-1	ribose-phosphate diphosphokinase	2	automatic/finished	COMMON	no	0.5264	0.5316	0.69	34227.89	5.36
Z1979	CDS	ispE	1799314	1800165	852	-1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	1	automatic/finished	COMMON	no	0.5364	0.5352	0.39	30924.19	5.13
Z1980	CDS	lolB	1800165	1800788	624	-2	outer membrane lipoprotein LolB	1	automatic/finished	COMMON	no	0.5128	0.5625	0.50	23549.84	8.89
Z1981	CDS	hemA	1801002	1802258	1257	+3	glutamyl-tRNA reductase	1	automatic/finished	COMMON	no	0.5394	0.5752	0.51	46331.06	5.45
Z1982	CDS	prfA	1802300	1803382	1083	+2	peptide chain release factor RF1	2	automatic/finished	COMMON	no	0.5291	0.5042	0.60	40456.76	5.08
Z1983	CDS	prmC	1803382	1804215	834	+1	protein-(glutamine-N(5)) methyltransferase	1	automatic/finished	COMMON	no	0.5576	0.5468	0.44	31014.96	4.90
Z1984	CDS	ychQ	1804212	1804604	393	+3	SirB family protein YchQ	1	automatic/finished	COMMON	no	0.4707	0.5114	0.40	14654.24	10.75
Z1985	CDS	ychA	1804608	1805417	810	+3	transglutaminase-like/TPR repeat-containing protein	1	automatic/finished	COMMON	no	0.4679	0.5074	0.45	30840.25	4.46
Z1986	CDS	kdsA	1805453	1806307	855	+2	3-deoxy-D-manno-octulosonate 8-phosphate synthase	2	automatic/finished	COMMON	no	0.5170	0.5684	0.63	30859.36	6.35
Z1987	CDS		1806455	1806589	135	-3	small toxic polypeptide LdrB (modular protein)	1	automatic/finished	COMMON	no	0.5333	0.6444	0.45	4961.72	9.99
Z1989	CDS		1806991	1807125	135	-1	small toxic polypeptide LdrB (modular protein)	1	automatic/finished	COMMON	no	0.5481	0.6667	0.46	4949.66	9.99
ECO571804	CDS		1807520	1807654	135	-3	small toxic polypeptide LdrB (modular protein)	1	automatic/finished	NEW	no	0.5481	0.6667	0.46	4949.66	9.99
Z1991	CDS	chaA	1808027	1809127	1101	-3	Na(+)/K(+):H(+) antiporter ChaA	1	automatic/finished	COMMON	no	0.4896	0.5313	0.41	39176.88	6.16
Z1992	CDS	chaB	1809397	1809627	231	+1	putative cation transport regulator ChaB	1	automatic/finished	COMMON	no	0.4589	0.4416	0.59	8944.48	6.49
Z1993	CDS	chaC	1809788	1810483	696	+2	glutathione-specific gamma-glutamylcyclotransferase	1	automatic/finished	COMMON	no	0.5503	0.5603	0.39	25594.43	4.97
Z1994	CDS	ychN	1810527	1810880	354	-2	DsrE/F sulfur relay family protein YchN	1	automatic/finished	COMMON	no	0.5169	0.5847	0.38	12692.23	5.02
Z1995	CDS	ychO	1811207	1812460	1254	+2	putative invasin YchO	1	automatic/finished	COMMON	no	0.5144	0.5263	0.39	47008.13	5.14
Z1996	CDS	narL	1812461	1813111	651	-3	DNA-binding transcriptional dual regulator NarL	2	automatic/finished	COMMON	no	0.5192	0.5714	0.52	23925.82	5.73
Z1998	CDS	narX	1813104	1814900	1797	-2	sensory histidine kinase NarX	1	automatic/finished	COMMON	no	0.5342	0.5626	0.42	67081.36	6.28

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

Z1978

CDS

prs

1798216

1799163

948

-1

ribose-phosphate diphosphokinase

automatic/finished

COMMON

0.5264

0.5316

0.69

34227.89

5.36

Z1979

CDS

ispE

1799314

1800165

852

-1

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase

automatic/finished

COMMON

0.5364

0.5352

0.39

30924.19

5.13

Z1980

CDS

lolB

1800165

1800788

624

-2

outer membrane lipoprotein LolB

automatic/finished

COMMON

0.5128

0.5625

0.50

23549.84

8.89

Z1981

CDS

hemA

1801002

1802258

1257

glutamyl-tRNA reductase

automatic/finished

COMMON

0.5394

0.5752

0.51

46331.06

5.45

Z1982

CDS

prfA

1802300

1803382

1083

peptide chain release factor RF1

automatic/finished

COMMON

0.5291

0.5042

0.60

40456.76

5.08

Z1983

CDS

prmC

1803382

1804215

834

protein-(glutamine-N(5)) methyltransferase

automatic/finished

COMMON

0.5576

0.5468

0.44

31014.96

4.90

Z1984

CDS

ychQ

1804212

1804604

393

SirB family protein YchQ

automatic/finished

COMMON

0.4707

0.5114

0.40

14654.24

10.75

Z1985

CDS

ychA

1804608

1805417

810

transglutaminase-like/TPR repeat-containing protein

automatic/finished

COMMON

0.4679

0.5074

0.45

30840.25

4.46

Z1986

CDS

kdsA

1805453

1806307

855

3-deoxy-D-manno-octulosonate 8-phosphate synthase

automatic/finished

COMMON

0.5170

0.5684

0.63

30859.36

6.35

Z1987

CDS

1806455

1806589

135

-3

small toxic polypeptide LdrB (modular protein)

automatic/finished

COMMON

0.5333

0.6444

0.45

4961.72

9.99

Z1989

CDS

1806991

1807125

135

-1

small toxic polypeptide LdrB (modular protein)

automatic/finished

COMMON

0.5481

0.6667

0.46

4949.66

9.99

ECO571804

CDS

1807520

1807654

135

-3

small toxic polypeptide LdrB (modular protein)

automatic/finished

NEW

0.5481

0.6667

0.46

4949.66

9.99

Z1991

CDS

chaA

1808027

1809127

1101

-3

Na(+)/K(+):H(+) antiporter ChaA

automatic/finished

COMMON

0.4896

0.5313

0.41

39176.88

6.16

Z1992

CDS

chaB

1809397

1809627

231

putative cation transport regulator ChaB

automatic/finished

COMMON

0.4589

0.4416

0.59

8944.48

6.49

Z1993

CDS

chaC

1809788

1810483

696

glutathione-specific gamma-glutamylcyclotransferase

automatic/finished

COMMON

0.5503

0.5603

0.39

25594.43

4.97

Z1994

CDS

ychN

1810527

1810880

354

-2

DsrE/F sulfur relay family protein YchN

automatic/finished

COMMON

0.5169

0.5847

0.38

12692.23

5.02

Z1995

CDS

ychO

1811207

1812460

1254

putative invasin YchO

automatic/finished

COMMON

0.5144

0.5263

0.39

47008.13

5.14

Z1996

CDS

narL

1812461

1813111

651

-3

DNA-binding transcriptional dual regulator NarL

automatic/finished

COMMON

0.5192

0.5714

0.52

23925.82

5.73

Z1998

CDS

narX

1813104

1814900

1797

-2

sensory histidine kinase NarX

automatic/finished

COMMON

0.5342

0.5626

0.42

67081.36

6.28

Sequence	Id	Begin	End	Comments
	RPTR1259046	1806371	1807973	2 repeats

Sequence

Begin

End

Comments

RPTR1259046

1806371

1807973

2 repeats

Escherichia coli O157:H7 EDL933 - chromosome NC_002655.2 Public

(sequence length : 5528445 bases)