MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD3552	CDS		3476588	3477895	1308	+2	conserved hypothetical protein; putative membrane protein	1	validated/Curated	no	no	0.4281	0.3807	0.57	49074.83	6.14
ACIAD3553	CDS		3477927	3479081	1155	+3	putative methionine aminotransferase, PLP-dependent	1	validated/finished	no	no	0.4554	0.3948	0.58	43601.86	5.69
ACIAD3554	CDS		3479143	3480555	1413	+1	putative transporter	1	validated/Curated	no	no	0.4324	0.4204	0.58	51151.60	9.68
ACIAD3555	CDS		3480612	3481448	837	-3	putative short-chain dehydrogenase	1	validated/Curated	no	no	0.4217	0.3513	0.62	30366.72	9.33
ACIAD3556	CDS		3481642	3482331	690	+1	putative transcriptional regulator (TetR family)	1	validated/Curated	no	no	0.4304	0.4435	0.56	26283.38	7.92
ACIAD3557	CDS	phoB	3482534	3483244	711	+2	positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR	1	validated/Curated	no	no	0.4501	0.3544	0.63	26625.50	5.59
ACIAD3558	CDS	phoR	3483248	3484612	1365	+2	two-component sensor	1	validated/Curated	no	no	0.4183	0.3868	0.59	52053.62	6.07
ACIAD3559	CDS		3484792	3485295	504	+1	conserved hypothetical protein; putative conserved domain	2	validated/Curated	no	no	0.4067	0.3095	0.60	17542.48	9.23
ACIAD3560	CDS	psd	3485365	3486222	858	-2	phosphatidylserine decarboxylase	1	validated/Curated	no	no	0.4382	0.3951	0.58	31350.85	8.25
ACIAD3561	CDS	rhdA	3486219	3487076	858	-3	thiosulfate sulfurtransferase (Rhodanese-like protein)	1	validated/Curated	no	no	0.4720	0.3881	0.54	32112.35	5.55
ACIAD3562	CDS	pncB	3487171	3488394	1224	-2	nicotinate phosphoribosyltransferase	1	validated/Curated	no	no	0.4060	0.3578	0.60	47556.63	5.48
ACIAD3563	CDS	dtd	3488548	3488988	441	+1	D-tyrosyl tRNA(tyr) deacylase	2	validated/Curated	no	no	0.4240	0.3537	0.54	16399.26	5.11
ACIAD3564	CDS		3489025	3489510	486	-2	conserved hypothetical protein	2	validated/Curated	no	no	0.4218	0.4012	0.63	17879.42	9.75
ACIAD3565	CDS		3489665	3490042	378	-1	conserved hypothetical protein; putative membrane protein	2	validated/Curated	no	no	0.4312	0.4206	0.53	14638.74	9.86
ACIAD3567	CDS	serB	3490419	3491639	1221	-3	phosphoserine phosphatase	1	validated/Curated	no	no	0.4742	0.3980	0.58	43950.60	4.84
ACIAD3568	CDS		3491717	3493012	1296	+2	conserved hypothetical protein	1	validated/Curated	no	no	0.4568	0.4537	0.55	48160.62	9.14

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD3552

CDS

3476588

3477895

1308

conserved hypothetical protein; putative membrane protein

validated/Curated

0.4281

0.3807

0.57

49074.83

6.14

ACIAD3553

CDS

3477927

3479081

1155

putative methionine aminotransferase, PLP-dependent

validated/finished

0.4554

0.3948

0.58

43601.86

5.69

ACIAD3554

CDS

3479143

3480555

1413

putative transporter

validated/Curated

0.4324

0.4204

0.58

51151.60

9.68

ACIAD3555

CDS

3480612

3481448

837

-3

putative short-chain dehydrogenase

validated/Curated

0.4217

0.3513

0.62

30366.72

9.33

ACIAD3556

CDS

3481642

3482331

690

putative transcriptional regulator (TetR family)

validated/Curated

0.4304

0.4435

0.56

26283.38

7.92

ACIAD3557

CDS

phoB

3482534

3483244

711

positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR

validated/Curated

0.4501

0.3544

0.63

26625.50

5.59

ACIAD3558

CDS

phoR

3483248

3484612

1365

two-component sensor

validated/Curated

0.4183

0.3868

0.59

52053.62

6.07

ACIAD3559

CDS

3484792

3485295

504

conserved hypothetical protein; putative conserved domain

validated/Curated

0.4067

0.3095

0.60

17542.48

9.23

ACIAD3560

CDS

psd

3485365

3486222

858

-2

phosphatidylserine decarboxylase

validated/Curated

0.4382

0.3951

0.58

31350.85

8.25

ACIAD3561

CDS

rhdA

3486219

3487076

858

-3

thiosulfate sulfurtransferase (Rhodanese-like protein)

validated/Curated

0.4720

0.3881

0.54

32112.35

5.55

ACIAD3562

CDS

pncB

3487171

3488394

1224

-2

nicotinate phosphoribosyltransferase

validated/Curated

0.4060

0.3578

0.60

47556.63

5.48

ACIAD3563

CDS

dtd

3488548

3488988

441

D-tyrosyl tRNA(tyr) deacylase

validated/Curated

0.4240

0.3537

0.54

16399.26

5.11

ACIAD3564

CDS

3489025

3489510

486

-2

conserved hypothetical protein

validated/Curated

0.4218

0.4012

0.63

17879.42

9.75

ACIAD3565

CDS

3489665

3490042

378

-1

conserved hypothetical protein; putative membrane protein

validated/Curated

0.4312

0.4206

0.53

14638.74

9.86

ACIAD3567

CDS

serB

3490419

3491639

1221

-3

phosphoserine phosphatase

validated/Curated

0.4742

0.3980

0.58

43950.60

4.84

ACIAD3568

CDS

3491717

3493012

1296

conserved hypothetical protein

validated/Curated

0.4568

0.4537

0.55

48160.62

9.14

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)