MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD3292	CDS	mdfA	3201357	3202586	1230	-3	multidrug/chloramphenicol efflux transport protein (MFS superfamily)	1	validated/Curated	no	no	0.4390	0.4366	0.56	45512.24	8.93
ACIAD3293	CDS		3202581	3202736	156	+3	hypothetical protein	1	validated/Curated	no	no	0.3782	0.3654	0.54	5868.65	5.05
ACIAD3295	CDS	mdaB	3203073	3203693	621	+3	modulator of drug activity, similar to electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase	1	validated/Curated	no	no	0.4138	0.3623	0.64	23127.30	5.96
ACIAD3296	CDS		3203690	3204007	318	+2	putative monooxygenase	1	validated/finished	no	no	0.4560	0.3868	0.60	11967.13	5.13
ACIAD3297	CDS		3204103	3205662	1560	-2	putative cytidine / deoxycytidylate deaminase family protein	1	validated/Curated	no	no	0.4064	0.3692	0.54	59605.53	5.90
ACIAD3298	CDS		3206031	3206837	807	-3	putative short-chain dehydrogenase	3	validated/Curated	no	no	0.3383	0.2602	0.56	29464.88	9.07
ACIAD3299	CDS		3207081	3207461	381	-3	conserved hypothetical protein; putative signal peptide	3	validated/Curated	no	no	0.3911	0.3386	0.58	14045.66	9.14
ACIAD3300	CDS		3207551	3208960	1410	-1	putative FAD/FMN-containing dehydrogenase	2	validated/Curated	no	no	0.4255	0.3702	0.65	52385.04	4.97
ACIAD3302	CDS	serA	3209228	3210460	1233	+2	D-3-phosphoglycerate dehydrogenase	2	validated/Curated	no	no	0.4339	0.3455	0.71	44267.10	6.29
ACIAD3303	CDS		3210553	3211440	888	+1	putative amino acid efflux system	1	validated/Curated	no	no	0.4369	0.3885	0.58	32305.42	9.66
ACIAD3304	CDS		3211516	3212403	888	+1	putative amino acid efflux system	1	validated/Curated	no	no	0.4369	0.4426	0.55	32283.36	8.91
ACIAD3305	CDS		3212419	3212868	450	-2	conserved hypothetical protein	2	validated/Curated	no	no	0.3911	0.3467	0.67	17646.06	5.15
ACIAD3306	CDS		3213017	3213787	771	-1	conserved hypothetical protein; putative membrane protein	1	validated/Curated	no	no	0.4137	0.3774	0.60	27307.86	9.73
ACIAD3307	CDS	truB	3213800	3214756	957	-1	tRNA pseudouridine 55 synthase	2	validated/Curated	no	no	0.4242	0.3260	0.58	35614.75	5.96
ACIAD3308	CDS	lifO	3214851	3215882	1032	+3	lipase chaperone (Lipase foldase) (Lipase helper protein) (Lipase activator protein) (Lipase modulator)	3	validated/Curated	no	no	0.3924	0.3285	0.56	39014.29	5.93
ACIAD3309	CDS		3216014	3216982	969	+2	lipase	3	validated/Curated	no	no	0.4180	0.2941	0.56	34620.86	7.17

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD3292

CDS

mdfA

3201357

3202586

1230

-3

multidrug/chloramphenicol efflux transport protein (MFS superfamily)

validated/Curated

0.4390

0.4366

0.56

45512.24

8.93

ACIAD3293

CDS

3202581

3202736

156

hypothetical protein

validated/Curated

0.3782

0.3654

0.54

5868.65

5.05

ACIAD3295

CDS

mdaB

3203073

3203693

621

modulator of drug activity, similar to electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase

validated/Curated

0.4138

0.3623

0.64

23127.30

5.96

ACIAD3296

CDS

3203690

3204007

318

putative monooxygenase

validated/finished

0.4560

0.3868

0.60

11967.13

5.13

ACIAD3297

CDS

3204103

3205662

1560

-2

putative cytidine / deoxycytidylate deaminase family protein

validated/Curated

0.4064

0.3692

0.54

59605.53

5.90

ACIAD3298

CDS

3206031

3206837

807

-3

putative short-chain dehydrogenase

validated/Curated

0.3383

0.2602

0.56

29464.88

9.07

ACIAD3299

CDS

3207081

3207461

381

-3

conserved hypothetical protein; putative signal peptide

validated/Curated

0.3911

0.3386

0.58

14045.66

9.14

ACIAD3300

CDS

3207551

3208960

1410

-1

putative FAD/FMN-containing dehydrogenase

validated/Curated

0.4255

0.3702

0.65

52385.04

4.97

ACIAD3302

CDS

serA

3209228

3210460

1233

D-3-phosphoglycerate dehydrogenase

validated/Curated

0.4339

0.3455

0.71

44267.10

6.29

ACIAD3303

CDS

3210553

3211440

888

putative amino acid efflux system

validated/Curated

0.4369

0.3885

0.58

32305.42

9.66

ACIAD3304

CDS

3211516

3212403

888

putative amino acid efflux system

validated/Curated

0.4369

0.4426

0.55

32283.36

8.91

ACIAD3305

CDS

3212419

3212868

450

-2

conserved hypothetical protein

validated/Curated

0.3911

0.3467

0.67

17646.06

5.15

ACIAD3306

CDS

3213017

3213787

771

-1

conserved hypothetical protein; putative membrane protein

validated/Curated

0.4137

0.3774

0.60

27307.86

9.73

ACIAD3307

CDS

truB

3213800

3214756

957

-1

tRNA pseudouridine 55 synthase

validated/Curated

0.4242

0.3260

0.58

35614.75

5.96

ACIAD3308

CDS

lifO

3214851

3215882

1032

lipase chaperone (Lipase foldase) (Lipase helper protein) (Lipase activator protein) (Lipase modulator)

validated/Curated

0.3924

0.3285

0.56

39014.29

5.93

ACIAD3309

CDS

3216014

3216982

969

lipase

validated/Curated

0.4180

0.2941

0.56

34620.86

7.17

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)