MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD0047	CDS		50905	51540	636	-2	conserved hypothetical protein; putative transcriptional regulator (TetR family)	2	validated/Curated	no	no	0.4623	0.4151	0.57	24039.34	5.44
ACIAD0048	CDS		51732	52754	1023	+3	putative oxidoreductase	1	validated/Curated	no	no	0.4242	0.3842	0.58	38201.30	6.74
ACIAD0049	CDS		52789	53940	1152	+1	putative fatty acid desaturase	1	validated/Curated	no	no	0.4219	0.4010	0.62	44212.49	6.72
ACIAD0050	CDS	rph	54008	54763	756	+2	ribonuclease PH (RNase PH), tRNA nucleotidyltransferase	3	validated/finished	no	no	0.4471	0.3730	0.64	27896.90	6.94
ACIAD0051	CDS		54987	55442	456	+3	PAAR motif-containing protein	3	validated/Curated	no	no	0.3860	0.2566	0.63	16265.82	4.84
ACIAD0052	CDS		55435	55983	549	+1	PAAR motif-containing protein	3	validated/Curated	no	no	0.3552	0.2240	0.55	20058.54	5.85
ACIAD0053	CDS		55985	56617	633	+2	hypothetical protein; putative zinc protease	3	validated/Curated	no	no	0.2701	0.1754	0.54	24257.82	8.39
ACIAD0054	CDS		56618	57070	453	+2	hypothetical protein; putative fragment of ribosomal protein S3	3	validated/Curated	no	no	0.2274	0.2119	0.54	18013.08	8.69
ACIAD0056	CDS		57531	57689	159	+3	hypothetical protein	3	validated/Curated	no	no	0.2579	0.1887	0.54	6146.74	5.66
ACIAD0057	fCDS		57779	58168	390	+2	fragment of transposase (part 1)	3	validated/Curated	no	pseudo	0.3154	0.3538	0.63	15481.84	9.34
ACIAD0058	fCDS		58242	58427	186	+3	fragment of transposase (part 2)	3	validated/Curated	no	pseudo	0.3925	0.3871	0.46	7141.16	10.22
ACIAD0059	fCDS		58409	58615	207	+2	fragment of transposase (part 3)	3	validated/Curated	no	pseudo	0.3140	0.3623	0.46	8061.16	9.57
ACIAD0060	CDS		58923	59048	126	+3	hypothetical protein	3	validated/Curated	no	no	0.3810	0.2857	0.50	4616.25	6.42
ACIAD0061	CDS		59058	59261	204	+3	conserved hypothetical protein; putative signal peptide	3	validated/Curated	no	no	0.4216	0.3676	0.67	7585.25	5.81
ACIAD0062	CDS	nadC	59258	60127	870	-1	nicotinate-nucleotide pyrophosphorylase (quinolinate phosphoribosyltransferase)	1	validated/finished	no	no	0.4460	0.3690	0.66	31518.81	4.66
ACIAD0063	CDS	ampD	60290	60880	591	+2	N-acetyl-anhydromuramyl-L-alanine amidase (Regulates ampC)	1	validated/Curated	no	no	0.4399	0.4162	0.60	22728.74	5.81
ACIAD0064	CDS		60933	62480	1548	+3	putative virulence factor MviN family (multidrug/oligosaccharidyl-lipid/polysaccharide exporter superfamily)	1	validated/Curated	no	no	0.4606	0.4516	0.55	57238.94	9.48
ACIAD0065	CDS	fklB	62660	63358	699	-1	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)	1	validated/Curated	no	no	0.4421	0.3734	0.59	24930.46	9.05
ACIAD0066	CDS	fkpA	63404	64111	708	-1	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)	2	validated/Curated	no	no	0.4350	0.3347	0.67	25298.53	6.13
ACIAD0068	CDS	ptk	64281	66491	2211	-3	tyrosine-protein kinase, autophosphorylates	1	validated/Curated	no	no	0.3953	0.3311	0.61	82276.02	5.95

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD0047

CDS

50905

51540

636

-2

conserved hypothetical protein; putative transcriptional regulator (TetR family)

validated/Curated

0.4623

0.4151

0.57

24039.34

5.44

ACIAD0048

CDS

51732

52754

1023

putative oxidoreductase

validated/Curated

0.4242

0.3842

0.58

38201.30

6.74

ACIAD0049

CDS

52789

53940

1152

putative fatty acid desaturase

validated/Curated

0.4219

0.4010

0.62

44212.49

6.72

ACIAD0050

CDS

rph

54008

54763

756

ribonuclease PH (RNase PH), tRNA nucleotidyltransferase

validated/finished

0.4471

0.3730

0.64

27896.90

6.94

ACIAD0051

CDS

54987

55442

456

PAAR motif-containing protein

validated/Curated

0.3860

0.2566

0.63

16265.82

4.84

ACIAD0052

CDS

55435

55983

549

PAAR motif-containing protein

validated/Curated

0.3552

0.2240

0.55

20058.54

5.85

ACIAD0053

CDS

55985

56617

633

hypothetical protein; putative zinc protease

validated/Curated

0.2701

0.1754

0.54

24257.82

8.39

ACIAD0054

CDS

56618

57070

453

hypothetical protein; putative fragment of ribosomal protein S3

validated/Curated

0.2274

0.2119

0.54

18013.08

8.69

ACIAD0056

CDS

57531

57689

159

hypothetical protein

validated/Curated

0.2579

0.1887

0.54

6146.74

5.66

ACIAD0057

fCDS

57779

58168

390

fragment of transposase (part 1)

validated/Curated

pseudo

0.3154

0.3538

0.63

15481.84

9.34

ACIAD0058

fCDS

58242

58427

186

fragment of transposase (part 2)

validated/Curated

pseudo

0.3925

0.3871

0.46

7141.16

10.22

ACIAD0059

fCDS

58409

58615

207

fragment of transposase (part 3)

validated/Curated

pseudo

0.3140

0.3623

0.46

8061.16

9.57

ACIAD0060

CDS

58923

59048

126

hypothetical protein

validated/Curated

0.3810

0.2857

0.50

4616.25

6.42

ACIAD0061

CDS

59058

59261

204

conserved hypothetical protein; putative signal peptide

validated/Curated

0.4216

0.3676

0.67

7585.25

5.81

ACIAD0062

CDS

nadC

59258

60127

870

-1

nicotinate-nucleotide pyrophosphorylase (quinolinate phosphoribosyltransferase)

validated/finished

0.4460

0.3690

0.66

31518.81

4.66

ACIAD0063

CDS

ampD

60290

60880

591

N-acetyl-anhydromuramyl-L-alanine amidase (Regulates ampC)

validated/Curated

0.4399

0.4162

0.60

22728.74

5.81

ACIAD0064

CDS

60933

62480

1548

putative virulence factor MviN family (multidrug/oligosaccharidyl-lipid/polysaccharide exporter superfamily)

validated/Curated

0.4606

0.4516

0.55

57238.94

9.48

ACIAD0065

CDS

fklB

62660

63358

699

-1

FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)

validated/Curated

0.4421

0.3734

0.59

24930.46

9.05

ACIAD0066

CDS

fkpA

63404

64111

708

-1

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)

validated/Curated

0.4350

0.3347

0.67

25298.53

6.13

ACIAD0068

CDS

ptk

64281

66491

2211

-3

tyrosine-protein kinase, autophosphorylates

validated/Curated

0.3953

0.3311

0.61

82276.02

5.95

Sequence	Id	Begin	End	Comments
	RPTR1412652	57719	58260	1 repeats
	RPTR1412653	62477	62605	2 repeats

Sequence

Begin

End

Comments

RPTR1412652

57719

58260

1 repeats

RPTR1412653

62477

62605

2 repeats

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)