MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD0060	CDS		58923	59048	126	+3	hypothetical protein	3	validated/Curated	no	no	0.3810	0.2857	0.50	4616.25	6.42
ACIAD0061	CDS		59058	59261	204	+3	conserved hypothetical protein; putative signal peptide	3	validated/Curated	no	no	0.4216	0.3676	0.67	7585.25	5.81
ACIAD0062	CDS	nadC	59258	60127	870	-1	nicotinate-nucleotide pyrophosphorylase (quinolinate phosphoribosyltransferase)	1	validated/finished	no	no	0.4460	0.3690	0.66	31518.81	4.66
ACIAD0063	CDS	ampD	60290	60880	591	+2	N-acetyl-anhydromuramyl-L-alanine amidase (Regulates ampC)	1	validated/Curated	no	no	0.4399	0.4162	0.60	22728.74	5.81
ACIAD0064	CDS		60933	62480	1548	+3	putative virulence factor MviN family (multidrug/oligosaccharidyl-lipid/polysaccharide exporter superfamily)	1	validated/Curated	no	no	0.4606	0.4516	0.55	57238.94	9.48
ACIAD0065	CDS	fklB	62660	63358	699	-1	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)	1	validated/Curated	no	no	0.4421	0.3734	0.59	24930.46	9.05
ACIAD0066	CDS	fkpA	63404	64111	708	-1	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)	2	validated/Curated	no	no	0.4350	0.3347	0.67	25298.53	6.13
ACIAD0068	CDS	ptk	64281	66491	2211	-3	tyrosine-protein kinase, autophosphorylates	1	validated/Curated	no	no	0.3953	0.3311	0.61	82276.02	5.95
ACIAD0069	CDS	ptp	66506	66937	432	-1	low molecular weight protein-tyrosine-phosphatase	1	validated/Curated	no	no	0.4213	0.4167	0.65	16475.47	8.37
ACIAD0070	CDS	wza	66934	68037	1104	-2	polysaccharide export protein	1	validated/Curated	no	no	0.4303	0.3668	0.58	40666.53	6.51
ACIAD0072	CDS	ugd	68507	69670	1164	+2	UDP-glucose 6-dehydrogenase	3	validated/Curated	no	no	0.3797	0.2964	0.58	42922.16	5.03
ACIAD0073	CDS		69689	70573	885	+2	putative glycosyl transferase family 2	3	validated/Curated	no	no	0.2847	0.2102	0.54	34350.26	8.62
ACIAD0074	CDS		70563	71492	930	+3	putative glycosyl transferase family 2	3	validated/Curated	no	no	0.2677	0.1968	0.59	36116.53	8.55
ACIAD0075	CDS		71489	72739	1251	+2	putative polysaccharide transport protein	3	validated/Curated	no	no	0.2502	0.2014	0.60	48324.06	9.35
ACIAD0076	CDS	rmlB	72769	73839	1071	+1	dTDP-D-glucose-4,6-dehydratase	3	validated/Curated	no	no	0.4015	0.2829	0.65	40046.38	5.44
ACIAD0078	CDS	rmlD	73858	74766	909	+1	dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L- rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L- rhamnose synthetase)	3	validated/Curated	no	no	0.4015	0.2904	0.57	33883.12	5.76

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD0060

CDS

58923

59048

126

hypothetical protein

validated/Curated

0.3810

0.2857

0.50

4616.25

6.42

ACIAD0061

CDS

59058

59261

204

conserved hypothetical protein; putative signal peptide

validated/Curated

0.4216

0.3676

0.67

7585.25

5.81

ACIAD0062

CDS

nadC

59258

60127

870

-1

nicotinate-nucleotide pyrophosphorylase (quinolinate phosphoribosyltransferase)

validated/finished

0.4460

0.3690

0.66

31518.81

4.66

ACIAD0063

CDS

ampD

60290

60880

591

N-acetyl-anhydromuramyl-L-alanine amidase (Regulates ampC)

validated/Curated

0.4399

0.4162

0.60

22728.74

5.81

ACIAD0064

CDS

60933

62480

1548

putative virulence factor MviN family (multidrug/oligosaccharidyl-lipid/polysaccharide exporter superfamily)

validated/Curated

0.4606

0.4516

0.55

57238.94

9.48

ACIAD0065

CDS

fklB

62660

63358

699

-1

FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)

validated/Curated

0.4421

0.3734

0.59

24930.46

9.05

ACIAD0066

CDS

fkpA

63404

64111

708

-1

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)

validated/Curated

0.4350

0.3347

0.67

25298.53

6.13

ACIAD0068

CDS

ptk

64281

66491

2211

-3

tyrosine-protein kinase, autophosphorylates

validated/Curated

0.3953

0.3311

0.61

82276.02

5.95

ACIAD0069

CDS

ptp

66506

66937

432

-1

low molecular weight protein-tyrosine-phosphatase

validated/Curated

0.4213

0.4167

0.65

16475.47

8.37

ACIAD0070

CDS

wza

66934

68037

1104

-2

polysaccharide export protein

validated/Curated

0.4303

0.3668

0.58

40666.53

6.51

ACIAD0072

CDS

ugd

68507

69670

1164

UDP-glucose 6-dehydrogenase

validated/Curated

0.3797

0.2964

0.58

42922.16

5.03

ACIAD0073

CDS

69689

70573

885

putative glycosyl transferase family 2

validated/Curated

0.2847

0.2102

0.54

34350.26

8.62

ACIAD0074

CDS

70563

71492

930

putative glycosyl transferase family 2

validated/Curated

0.2677

0.1968

0.59

36116.53

8.55

ACIAD0075

CDS

71489

72739

1251

putative polysaccharide transport protein

validated/Curated

0.2502

0.2014

0.60

48324.06

9.35

ACIAD0076

CDS

rmlB

72769

73839

1071

dTDP-D-glucose-4,6-dehydratase

validated/Curated

0.4015

0.2829

0.65

40046.38

5.44

ACIAD0078

CDS

rmlD

73858

74766

909

dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L- rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L- rhamnose synthetase)

validated/Curated

0.4015

0.2904

0.57

33883.12

5.76

Sequence	Id	Begin	End	Comments
	RPTR1412653	62477	62605	2 repeats

Sequence

Begin

End

Comments

RPTR1412653

62477

62605

2 repeats

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)