MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD0242	CDS		242202	243689	1488	-3	magnesium chelatase, competence related protein (ComM)	1	validated/Curated	no	no	0.4415	0.2944	0.56	54266.25	8.37
ACIAD0243	CDS		243759	244052	294	-3	conserved hypothetical protein	1	validated/Curated	no	no	0.3435	0.2959	0.64	11334.83	6.57
ACIAD0244	CDS	glnK	244264	244602	339	+1	regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase)	2	validated/Curated	no	no	0.4100	0.2655	0.70	12190.62	5.43
ACIAD0245	CDS	amtB	244664	246064	1401	+2	ammonium transport protein (Amt family)	2	validated/Curated	no	no	0.4675	0.3490	0.68	47581.70	5.99
ACIAD0246	CDS	nrdR	246187	246666	480	+1	Transcriptional repressor nrdR	1	validated/Curated	no	no	0.4542	0.3875	0.57	18637.71	7.77
ACIAD0247	CDS	ribD	246659	247747	1089	+2	bifunctional protein [Includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5- phosphoribosylamino)uracil reductase (HTP reductase) ]	1	validated/Curated	no	no	0.4619	0.3306	0.54	39464.86	5.43
ACIAD0248	CDS		247744	249039	1296	+1	putative DNA modification methylase (Adenine-specific methyltransferase)	1	validated/Curated	no	no	0.4475	0.3796	0.57	48940.53	9.01
ACIAD0249	CDS	ribC	249084	249743	660	+3	riboflavin synthase alpha chain	2	validated/Curated	no	no	0.4394	0.3864	0.58	23979.30	5.41
ACIAD0250	CDS		249791	250009	219	-1	conserved hypothetical protein	3	validated/Curated	no	no	0.3881	0.3973	0.60	7975.84	8.13
ACIAD0251	CDS		250132	250764	633	-2	conserved hypothetical protein	2	validated/Curated	no	no	0.4250	0.2938	0.64	24450.44	5.65
ACIAD0252	CDS	holC	250800	251207	408	-3	DNA polymerase III, chi subunit	3	validated/Curated	no	no	0.3578	0.2721	0.63	16273.15	7.86
ACIAD0253	CDS	pepA	251200	252648	1449	-2	aminopeptidase A	3	validated/Curated	no	no	0.4403	0.3333	0.63	52314.84	5.01
ACIAD0254	CDS		252803	253903	1101	+2	putative lipopolysaccharide permease	1	validated/Curated	no	no	0.4396	0.4114	0.52	41494.71	10.01
ACIAD0255	CDS		253903	254973	1071	+1	putative lipopolysaccharide permease	1	validated/Curated	no	no	0.4444	0.4426	0.53	40046.26	9.46
ACIAD0256	CDS	gpmI	255095	256642	1548	+2	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2	validated/Curated	no	no	0.4393	0.3140	0.70	56579.96	5.36
ACIAD0257	CDS		256653	257834	1182	+3	putative periplasmic carboxyl-terminal protease	1	validated/Curated	no	no	0.4222	0.3680	0.59	43958.33	5.76

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD0242

CDS

242202

243689

1488

-3

magnesium chelatase, competence related protein (ComM)

validated/Curated

0.4415

0.2944

0.56

54266.25

8.37

ACIAD0243

CDS

243759

244052

294

-3

conserved hypothetical protein

validated/Curated

0.3435

0.2959

0.64

11334.83

6.57

ACIAD0244

CDS

glnK

244264

244602

339

regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase)

validated/Curated

0.4100

0.2655

0.70

12190.62

5.43

ACIAD0245

CDS

amtB

244664

246064

1401

ammonium transport protein (Amt family)

validated/Curated

0.4675

0.3490

0.68

47581.70

5.99

ACIAD0246

CDS

nrdR

246187

246666

480

Transcriptional repressor nrdR

validated/Curated

0.4542

0.3875

0.57

18637.71

7.77

ACIAD0247

CDS

ribD

246659

247747

1089

bifunctional protein [Includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5- phosphoribosylamino)uracil reductase (HTP reductase) ]

validated/Curated

0.4619

0.3306

0.54

39464.86

5.43

ACIAD0248

CDS

247744

249039

1296

putative DNA modification methylase (Adenine-specific methyltransferase)

validated/Curated

0.4475

0.3796

0.57

48940.53

9.01

ACIAD0249

CDS

ribC

249084

249743

660

riboflavin synthase alpha chain

validated/Curated

0.4394

0.3864

0.58

23979.30

5.41

ACIAD0250

CDS

249791

250009

219

-1

conserved hypothetical protein

validated/Curated

0.3881

0.3973

0.60

7975.84

8.13

ACIAD0251

CDS

250132

250764

633

-2

conserved hypothetical protein

validated/Curated

0.4250

0.2938

0.64

24450.44

5.65

ACIAD0252

CDS

holC

250800

251207

408

-3

DNA polymerase III, chi subunit

validated/Curated

0.3578

0.2721

0.63

16273.15

7.86

ACIAD0253

CDS

pepA

251200

252648

1449

-2

aminopeptidase A

validated/Curated

0.4403

0.3333

0.63

52314.84

5.01

ACIAD0254

CDS

252803

253903

1101

putative lipopolysaccharide permease

validated/Curated

0.4396

0.4114

0.52

41494.71

10.01

ACIAD0255

CDS

253903

254973

1071

putative lipopolysaccharide permease

validated/Curated

0.4444

0.4426

0.53

40046.26

9.46

ACIAD0256

CDS

gpmI

255095

256642

1548

2,3-bisphosphoglycerate-independent phosphoglycerate mutase

validated/Curated

0.4393

0.3140

0.70

56579.96

5.36

ACIAD0257

CDS

256653

257834

1182

putative periplasmic carboxyl-terminal protease

validated/Curated

0.4222

0.3680

0.59

43958.33

5.76

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)