MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD1516	CDS		1514422	1516914	2493	+1	putative ferric enterobactin receptor protein	3	validated/Curated	no	no	0.3943	0.2575	0.58	90216.36	6.38
ACIAD1517	CDS		1516956	1518218	1263	+3	putative exported hydrolase	3	validated/finished	no	no	0.3998	0.2352	0.59	45256.86	8.81
ACIAD1518	CDS		1518310	1519398	1089	-2	putative alkanesulfonate monooxygenase	3	validated/finished	no	no	0.4279	0.2920	0.60	39975.06	8.69
ACIAD1519	CDS		1519714	1520790	1077	+1	putative sigma-54 dependent transcriptional regulator	3	validated/Curated	no	no	0.3593	0.2312	0.61	40183.60	8.38
ACIAD1520	CDS	tatC	1520820	1521566	747	-3	Sec-independent protein secretion pathway, component C.	3	validated/Curated	no	no	0.3307	0.3012	0.64	28597.50	8.90
ACIAD1521	CDS	tatB	1521563	1521979	417	-1	Sec-independent protein secretion pathway, component B	3	validated/Curated	no	no	0.3453	0.2806	0.56	16115.04	8.16
ACIAD1522	CDS	tatA	1521993	1522208	216	-3	Sec-independent protein secretion pathway, translocase protein	1	validated/Curated	no	no	0.2731	0.1806	0.75	7969.89	9.35
ACIAD1523	CDS		1522305	1523060	756	-3	putative transport protein (ABC superfamily, ATP_bind)	3	validated/Curated	no	no	0.3915	0.2817	0.55	28461.80	6.01
ACIAD1524	CDS		1523095	1523883	789	-2	putative permease protein (ABC superfamily, membrane)	3	validated/Curated	no	no	0.3840	0.3156	0.53	29149.56	9.82
ACIAD1525	CDS		1523883	1524722	840	-3	putative permease protein (ABC superfamily, membrane)	3	validated/Curated	no	no	0.3714	0.3036	0.55	31037.63	10.07
ACIAD1526	CDS		1524726	1525799	1074	-3	putative binding protein (ABC superfamily, peri_bind)	3	validated/Curated	no	no	0.3873	0.2737	0.65	39976.75	7.31
ACIAD1527	CDS		1526115	1527242	1128	+3	putative FMNH2-dependent methane/alkanesulfonate monooxygenase	3	validated/Curated	no	no	0.4362	0.3191	0.59	42751.57	6.02
ACIAD1528	CDS		1527439	1528266	828	+1	putative tonB-like protein	1	validated/Curated	no	no	0.4360	0.2862	0.55	30063.86	9.29
ACIAD1529	CDS		1528291	1529025	735	+1	putative biopolymer transport protein (ExbB-like)	3	validated/Curated	no	no	0.4204	0.3306	0.63	26208.90	8.12
ACIAD1530	CDS		1529025	1529429	405	+3	putative biopolymer transport protein (ExbD-like)	3	validated/Curated	no	no	0.3654	0.2889	0.61	14467.22	5.09
ACIAD1531	CDS		1529494	1531077	1584	-2	putative oligopeptide binding protein (ABC superfamily, peri_bind)(OppA)	3	validated/Curated	no	no	0.4160	0.2992	0.54	58920.42	9.45

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD1516

CDS

1514422

1516914

2493

putative ferric enterobactin receptor protein

validated/Curated

0.3943

0.2575

0.58

90216.36

6.38

ACIAD1517

CDS

1516956

1518218

1263

putative exported hydrolase

validated/finished

0.3998

0.2352

0.59

45256.86

8.81

ACIAD1518

CDS

1518310

1519398

1089

-2

putative alkanesulfonate monooxygenase

validated/finished

0.4279

0.2920

0.60

39975.06

8.69

ACIAD1519

CDS

1519714

1520790

1077

putative sigma-54 dependent transcriptional regulator

validated/Curated

0.3593

0.2312

0.61

40183.60

8.38

ACIAD1520

CDS

tatC

1520820

1521566

747

-3

Sec-independent protein secretion pathway, component C.

validated/Curated

0.3307

0.3012

0.64

28597.50

8.90

ACIAD1521

CDS

tatB

1521563

1521979

417

-1

Sec-independent protein secretion pathway, component B

validated/Curated

0.3453

0.2806

0.56

16115.04

8.16

ACIAD1522

CDS

tatA

1521993

1522208

216

-3

Sec-independent protein secretion pathway, translocase protein

validated/Curated

0.2731

0.1806

0.75

7969.89

9.35

ACIAD1523

CDS

1522305

1523060

756

-3

putative transport protein (ABC superfamily, ATP_bind)

validated/Curated

0.3915

0.2817

0.55

28461.80

6.01

ACIAD1524

CDS

1523095

1523883

789

-2

putative permease protein (ABC superfamily, membrane)

validated/Curated

0.3840

0.3156

0.53

29149.56

9.82

ACIAD1525

CDS

1523883

1524722

840

-3

putative permease protein (ABC superfamily, membrane)

validated/Curated

0.3714

0.3036

0.55

31037.63

10.07

ACIAD1526

CDS

1524726

1525799

1074

-3

putative binding protein (ABC superfamily, peri_bind)

validated/Curated

0.3873

0.2737

0.65

39976.75

7.31

ACIAD1527

CDS

1526115

1527242

1128

putative FMNH2-dependent methane/alkanesulfonate monooxygenase

validated/Curated

0.4362

0.3191

0.59

42751.57

6.02

ACIAD1528

CDS

1527439

1528266

828

putative tonB-like protein

validated/Curated

0.4360

0.2862

0.55

30063.86

9.29

ACIAD1529

CDS

1528291

1529025

735

putative biopolymer transport protein (ExbB-like)

validated/Curated

0.4204

0.3306

0.63

26208.90

8.12

ACIAD1530

CDS

1529025

1529429

405

putative biopolymer transport protein (ExbD-like)

validated/Curated

0.3654

0.2889

0.61

14467.22

5.09

ACIAD1531

CDS

1529494

1531077

1584

-2

putative oligopeptide binding protein (ABC superfamily, peri_bind)(OppA)

validated/Curated

0.4160

0.2992

0.54

58920.42

9.45

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)