MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD1541	CDS	citA	1542461	1543771	1311	-1	citrate-proton symporter (MFS superfamily)	1	validated/Curated	no	no	0.4355	0.4142	0.61	48084.82	9.24
ACIAD1542	CDS		1543853	1544005	153	+2	hypothetical protein	3	validated/Curated	no	no	0.3791	0.3922	0.43	5890.60	10.02
ACIAD1543	CDS		1544040	1544969	930	-3	putative transcriptional regulator (LysR family)	1	validated/Curated	no	no	0.4323	0.3968	0.54	34442.22	8.54
ACIAD1545	CDS		1545290	1545745	456	-1	conserved hypothetical protein	3	validated/Curated	no	no	0.4211	0.4276	0.59	17940.20	9.00
ACIAD1547	CDS		1545909	1546775	867	+3	conserved hypothetical protein	1	validated/Curated	no	no	0.4141	0.4152	0.55	33508.16	7.93
ACIAD1548	CDS		1546902	1547582	681	+3	putative glutathione S-transferase	1	validated/Curated	no	no	0.4449	0.4361	0.53	25701.86	7.96
ACIAD1549	CDS		1547579	1548346	768	+2	putative short chain dehydrogenase	1	validated/Curated	no	no	0.4701	0.4609	0.53	28259.12	9.38
ACIAD1550	CDS		1548348	1549013	666	+3	putative oxidoreductase, short-chain dehydrogenase/reductase family	3	validated/Curated	no	no	0.4565	0.4369	0.48	25072.89	9.12
ACIAD1551	fCDS		1549355	1549534	180	+2	fragment of transposase (part 1)	3	validated/Curated	no	pseudo	0.3500	0.3000	0.51	6980.06	9.86
ACIAD1552	fCDS		1549648	1549836	189	+1	fragment of transposase (part 2)	3	validated/Curated	no	pseudo	0.3492	0.3016	0.37	7140.98	9.67
ACIAD1553	fCDS		1549833	1550030	198	+3	fragment of transposase (part 3)	3	validated/Curated	no	pseudo	0.3384	0.2273	0.57	7367.18	9.21
ACIAD1554	CDS		1550416	1551429	1014	+1	putative acyl-CoA dehydrogenase-related protein	3	validated/Curated	no	no	0.4320	0.3284	0.52	37946.83	5.94
ACIAD1556	CDS		1551417	1552193	777	+3	putative carbohydrate esterase Family 14 LmbE-like	1	validated/Curated	no	no	0.4247	0.3359	0.59	29136.20	5.58
ACIAD1557	CDS		1552186	1552785	600	+1	putative methyltransferase	1	validated/Curated	no	no	0.3717	0.2750	0.63	23238.27	5.83
ACIAD1558	CDS		1552782	1553426	645	+3	putative glycosyl transferase (GT2 family)	1	validated/finished	no	no	0.4279	0.3721	0.54	23911.16	5.52
ACIAD1559	CDS		1553921	1554184	264	-1	putative transcriptional regulator (MarR family)	3	validated/Curated	no	no	0.3674	0.3068	0.61	10298.59	6.95
ACIAD1560	CDS		1554216	1554407	192	+3	fragment of P-hydroxyphenylacetate hydroxylase C2:oxygenase component	3	validated/Curated	no	partial	0.4271	0.2969	0.73	6885.58	4.50
ACIAD1561	CDS		1554408	1555382	975	+3	P-hydroxyphenylacetate hydroxylase C1:reductase component	3	validated/Curated	no	no	0.3959	0.2892	0.60	36511.98	5.55
ACIAD1562	CDS		1555433	1555711	279	+2	fragment of transposase	3	validated/Curated	no	partial	0.3262	0.3118	0.58	11011.42	9.59
ACIAD1563	CDS		1555825	1555944	120	-2	fragment of transposase	3	validated/finished	no	partial	0.4417	0.4750	0.57	4742.06	6.02
ACIAD1564	CDS		1555992	1556120	129	+3	fragment of transposase	3	validated/Curated	no	partial	0.3876	0.3488	0.56	4767.23	6.76
ACIAD1565	CDS		1556547	1557311	765	+3	putative 3-hydroxyacyl-CoA dehydrogenase (short-chain) (1.1.1.35/1.1.1.178)	3	validated/finished	no	no	0.4484	0.3294	0.52	27075.10	6.84
ACIAD1566	CDS		1557308	1558501	1194	+2	putative acyl-CoA dehydrogenase family protein	1	validated/Curated	no	no	0.4623	0.3794	0.57	44216.08	6.25

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD1541

CDS

citA

1542461

1543771

1311

-1

citrate-proton symporter (MFS superfamily)

validated/Curated

0.4355

0.4142

0.61

48084.82

9.24

ACIAD1542

CDS

1543853

1544005

153

hypothetical protein

validated/Curated

0.3791

0.3922

0.43

5890.60

10.02

ACIAD1543

CDS

1544040

1544969

930

-3

putative transcriptional regulator (LysR family)

validated/Curated

0.4323

0.3968

0.54

34442.22

8.54

ACIAD1545

CDS

1545290

1545745

456

-1

conserved hypothetical protein

validated/Curated

0.4211

0.4276

0.59

17940.20

9.00

ACIAD1547

CDS

1545909

1546775

867

conserved hypothetical protein

validated/Curated

0.4141

0.4152

0.55

33508.16

7.93

ACIAD1548

CDS

1546902

1547582

681

putative glutathione S-transferase

validated/Curated

0.4449

0.4361

0.53

25701.86

7.96

ACIAD1549

CDS

1547579

1548346

768

putative short chain dehydrogenase

validated/Curated

0.4701

0.4609

0.53

28259.12

9.38

ACIAD1550

CDS

1548348

1549013

666

putative oxidoreductase, short-chain dehydrogenase/reductase family

validated/Curated

0.4565

0.4369

0.48

25072.89

9.12

ACIAD1551

fCDS

1549355

1549534

180

fragment of transposase (part 1)

validated/Curated

pseudo

0.3500

0.3000

0.51

6980.06

9.86

ACIAD1552

fCDS

1549648

1549836

189

fragment of transposase (part 2)

validated/Curated

pseudo

0.3492

0.3016

0.37

7140.98

9.67

ACIAD1553

fCDS

1549833

1550030

198

fragment of transposase (part 3)

validated/Curated

pseudo

0.3384

0.2273

0.57

7367.18

9.21

ACIAD1554

CDS

1550416

1551429

1014

putative acyl-CoA dehydrogenase-related protein

validated/Curated

0.4320

0.3284

0.52

37946.83

5.94

ACIAD1556

CDS

1551417

1552193

777

putative carbohydrate esterase Family 14 LmbE-like

validated/Curated

0.4247

0.3359

0.59

29136.20

5.58

ACIAD1557

CDS

1552186

1552785

600

putative methyltransferase

validated/Curated

0.3717

0.2750

0.63

23238.27

5.83

ACIAD1558

CDS

1552782

1553426

645

putative glycosyl transferase (GT2 family)

validated/finished

0.4279

0.3721

0.54

23911.16

5.52

ACIAD1559

CDS

1553921

1554184

264

-1

putative transcriptional regulator (MarR family)

validated/Curated

0.3674

0.3068

0.61

10298.59

6.95

ACIAD1560

CDS

1554216

1554407

192

fragment of P-hydroxyphenylacetate hydroxylase C2:oxygenase component

validated/Curated

partial

0.4271

0.2969

0.73

6885.58

4.50

ACIAD1561

CDS

1554408

1555382

975

P-hydroxyphenylacetate hydroxylase C1:reductase component

validated/Curated

0.3959

0.2892

0.60

36511.98

5.55

ACIAD1562

CDS

1555433

1555711

279

fragment of transposase

validated/Curated

partial

0.3262

0.3118

0.58

11011.42

9.59

ACIAD1563

CDS

1555825

1555944

120

-2

fragment of transposase

validated/finished

partial

0.4417

0.4750

0.57

4742.06

6.02

ACIAD1564

CDS

1555992

1556120

129

fragment of transposase

validated/Curated

partial

0.3876

0.3488

0.56

4767.23

6.76

ACIAD1565

CDS

1556547

1557311

765

putative 3-hydroxyacyl-CoA dehydrogenase (short-chain) (1.1.1.35/1.1.1.178)

validated/finished

0.4484

0.3294

0.52

27075.10

6.84

ACIAD1566

CDS

1557308

1558501

1194

putative acyl-CoA dehydrogenase family protein

validated/Curated

0.4623

0.3794

0.57

44216.08

6.25

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)