MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD2546	CDS	tgnF	2506057	2506659	603	-2	SSA dehydrogenase stimulating protein	2	validated/finished	no	no	0.4577	0.3184	0.66	21489.66	6.32
ACIAD2547	CDS	tgnR	2506793	2507485	693	+2	Trigonelline degradation transcriptional regulator	3	validated/finished	no	no	0.4228	0.3550	0.54	26130.02	5.92
ACIAD2548	CDS		2507502	2507795	294	+3	conserved hypothetical protein	2	validated/finished	no	no	0.4388	0.3469	0.71	11028.11	5.22
ACIAD2549	CDS	mgdD	2507921	2508592	672	-1	putative N-methyl glutamate dehydrogenase/oxidoreductase subunit D	1	validated/finished	no	no	0.4449	0.3884	0.46	24786.22	4.99
ACIAD2550	CDS	mgdC	2508595	2511516	2922	-2	putative N-methyl glutamate dehydrogenase/oxidoreductase subunit C	1	validated/finished	no	no	0.4627	0.4014	0.56	107627.68	8.00
ACIAD2551	CDS	mgdB	2511513	2511839	327	-3	putative N-methyl glutamate dehydrogenase/oxidoreductase subunit B	3	validated/finished	no	no	0.4067	0.3945	0.55	12575.56	4.63
ACIAD2552	CDS	mgdA	2511852	2513090	1239	-3	putative N-methyl glutamate dehydrogenase/oxidoreductase subunit A	1	validated/finished	no	no	0.4689	0.4504	0.54	45609.52	8.75
ACIAD2553	CDS	folD	2513132	2514025	894	-1	bifunctional protein [Includes: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase]	1	validated/finished	no	no	0.4541	0.3893	0.55	32297.08	6.09
ACIAD2554	CDS	purU	2514022	2514888	867	-2	formyltetrahydrofolate deformylase	1	validated/finished	no	no	0.4106	0.3772	0.62	32758.38	5.95
ACIAD2555	CDS		2515149	2515451	303	-3	hypothetical protein	1	validated/Curated	no	no	0.3135	0.2475	0.61	11885.44	8.45
ACIAD2556	CDS		2515737	2516777	1041	+3	conserved hypothetical protein; putative 2-nitropropane dioxygenase	1	validated/Curated	no	no	0.4284	0.3199	0.59	37580.25	6.31
ACIAD2557	CDS	dusB	2516779	2517804	1026	-2	tRNA-dihydrouridine synthase B	3	validated/Curated	no	no	0.4327	0.3450	0.60	37711.82	7.26
ACIAD2558	CDS		2517887	2519098	1212	+2	conserved hypothetical protein	1	validated/Curated	no	no	0.4051	0.3787	0.56	45860.44	9.04
ACIAD2559	CDS		2519101	2519718	618	+1	conserved hypothetical protein; putative phosphoserine phosphatase	1	validated/Curated	no	no	0.4061	0.3592	0.54	23458.17	6.57
ACIAD2560	CDS	proB	2519746	2520879	1134	-2	gamma-glutamyl kinase	1	validated/Curated	no	no	0.4586	0.3413	0.59	40714.88	6.32
ACIAD2561	CDS		2520898	2522100	1203	-2	putative GTP-binding protein (Obg)	2	validated/Curated	no	no	0.4680	0.3292	0.66	43798.56	4.93

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD2546

CDS

tgnF

2506057

2506659

603

-2

SSA dehydrogenase stimulating protein

validated/finished

0.4577

0.3184

0.66

21489.66

6.32

ACIAD2547

CDS

tgnR

2506793

2507485

693

Trigonelline degradation transcriptional regulator

validated/finished

0.4228

0.3550

0.54

26130.02

5.92

ACIAD2548

CDS

2507502

2507795

294

conserved hypothetical protein

validated/finished

0.4388

0.3469

0.71

11028.11

5.22

ACIAD2549

CDS

mgdD

2507921

2508592

672

-1

putative N-methyl glutamate dehydrogenase/oxidoreductase subunit D

validated/finished

0.4449

0.3884

0.46

24786.22

4.99

ACIAD2550

CDS

mgdC

2508595

2511516

2922

-2

putative N-methyl glutamate dehydrogenase/oxidoreductase subunit C

validated/finished

0.4627

0.4014

0.56

107627.68

8.00

ACIAD2551

CDS

mgdB

2511513

2511839

327

-3

putative N-methyl glutamate dehydrogenase/oxidoreductase subunit B

validated/finished

0.4067

0.3945

0.55

12575.56

4.63

ACIAD2552

CDS

mgdA

2511852

2513090

1239

-3

putative N-methyl glutamate dehydrogenase/oxidoreductase subunit A

validated/finished

0.4689

0.4504

0.54

45609.52

8.75

ACIAD2553

CDS

folD

2513132

2514025

894

-1

bifunctional protein [Includes: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase]

validated/finished

0.4541

0.3893

0.55

32297.08

6.09

ACIAD2554

CDS

purU

2514022

2514888

867

-2

formyltetrahydrofolate deformylase

validated/finished

0.4106

0.3772

0.62

32758.38

5.95

ACIAD2555

CDS

2515149

2515451

303

-3

hypothetical protein

validated/Curated

0.3135

0.2475

0.61

11885.44

8.45

ACIAD2556

CDS

2515737

2516777

1041

conserved hypothetical protein; putative 2-nitropropane dioxygenase

validated/Curated

0.4284

0.3199

0.59

37580.25

6.31

ACIAD2557

CDS

dusB

2516779

2517804

1026

-2

tRNA-dihydrouridine synthase B

validated/Curated

0.4327

0.3450

0.60

37711.82

7.26

ACIAD2558

CDS

2517887

2519098

1212

conserved hypothetical protein

validated/Curated

0.4051

0.3787

0.56

45860.44

9.04

ACIAD2559

CDS

2519101

2519718

618

conserved hypothetical protein; putative phosphoserine phosphatase

validated/Curated

0.4061

0.3592

0.54

23458.17

6.57

ACIAD2560

CDS

proB

2519746

2520879

1134

-2

gamma-glutamyl kinase

validated/Curated

0.4586

0.3413

0.59

40714.88

6.32

ACIAD2561

CDS

2520898

2522100

1203

-2

putative GTP-binding protein (Obg)

validated/Curated

0.4680

0.3292

0.66

43798.56

4.93

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)