MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD2840	CDS		2777468	2778244	777	-1	putative 3',5'-cyclic-nucleotide phosphodiesterase	1	validated/Curated	no	no	0.4093	0.3629	0.52	30224.52	7.38
ACIAD2841	CDS		2778225	2779166	942	-3	conserved hypothetical protein	3	validated/Curated	no	no	0.3546	0.2516	0.57	34929.24	7.21
ACIAD2842	CDS	pckG	2779570	2781399	1830	+1	phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (PEPCK)	2	validated/Curated	no	no	0.4486	0.3377	0.80	67303.53	5.13
ACIAD2843	CDS		2781523	2781909	387	+1	hypothetical protein; putative signal peptide	3	validated/Curated	no	no	0.4031	0.3101	0.61	14045.56	9.39
ACIAD2844	CDS	glpD	2781978	2783501	1524	-3	glycerol-3-phosphate dehydrogenase	3	validated/Curated	no	no	0.4068	0.3228	0.55	57352.70	6.20
ACIAD2845	CDS		2783701	2784129	429	+1	conserved hypothetical protein; putative signal peptide	3	validated/Curated	no	no	0.3706	0.2448	0.62	15487.76	9.27
ACIAD2846	CDS		2784157	2784825	669	-2	conserved hypothetical protein	1	validated/Curated	no	no	0.4081	0.3363	0.62	25330.14	4.87
ACIAD2847	CDS	folD	2785081	2785929	849	-2	bifunctional protein [Includes: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase]	2	validated/Curated	no	no	0.4570	0.3251	0.66	29506.90	5.62
ACIADtRNACys_50	tRNA		2786083	2786156	74	+1	Cys tRNA		validated/Curated	no	no
ACIADtRNALeu_51	tRNA		2786172	2786257	86	+1	Leu tRNA		validated/Curated	no	no
ACIAD2849	CDS		2786366	2786614	249	-1	hypothetical protein; putative membrane protein	3	validated/Curated	no	no	0.3133	0.2169	0.39	9434.04	10.21
ACIAD2850	CDS	glxK	2786714	2787877	1164	+2	glycerate kinase	3	validated/finished	no	no	0.4167	0.2887	0.54	40895.30	5.47
ACIADtRNALeu_52	tRNA		2787951	2788036	86	+1	Leu tRNA		validated/Curated	no	no
ACIAD2851	CDS		2788453	2788773	321	-2	conserved hypothetical protein	3	validated/Curated	no	no	0.3676	0.3458	0.65	12318.66	4.18
ACIAD2852	CDS	folP	2788851	2789702	852	-3	7,8-dihydropteroate synthase	3	validated/Curated	no	no	0.4319	0.3204	0.53	30831.05	5.56
ACIAD2853	CDS	ftsH	2789831	2791726	1896	-1	cell division protein	2	validated/Curated	no	no	0.4241	0.3054	0.70	69597.02	5.73
ACIAD2854	CDS	ftsJ	2791860	2792510	651	-3	cell division protein (filamentous temperature sensitivity, 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)	1	validated/Curated	no	no	0.4163	0.3088	0.59	24047.82	9.47

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD2840

CDS

2777468

2778244

777

-1

putative 3',5'-cyclic-nucleotide phosphodiesterase

validated/Curated

0.4093

0.3629

0.52

30224.52

7.38

ACIAD2841

CDS

2778225

2779166

942

-3

conserved hypothetical protein

validated/Curated

0.3546

0.2516

0.57

34929.24

7.21

ACIAD2842

CDS

pckG

2779570

2781399

1830

phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (PEPCK)

validated/Curated

0.4486

0.3377

0.80

67303.53

5.13

ACIAD2843

CDS

2781523

2781909

387

hypothetical protein; putative signal peptide

validated/Curated

0.4031

0.3101

0.61

14045.56

9.39

ACIAD2844

CDS

glpD

2781978

2783501

1524

-3

glycerol-3-phosphate dehydrogenase

validated/Curated

0.4068

0.3228

0.55

57352.70

6.20

ACIAD2845

CDS

2783701

2784129

429

conserved hypothetical protein; putative signal peptide

validated/Curated

0.3706

0.2448

0.62

15487.76

9.27

ACIAD2846

CDS

2784157

2784825

669

-2

conserved hypothetical protein

validated/Curated

0.4081

0.3363

0.62

25330.14

4.87

ACIAD2847

CDS

folD

2785081

2785929

849

-2

bifunctional protein [Includes: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase]

validated/Curated

0.4570

0.3251

0.66

29506.90

5.62

ACIADtRNACys_50

tRNA

2786083

2786156

Cys tRNA

validated/Curated

ACIADtRNALeu_51

tRNA

2786172

2786257

Leu tRNA

validated/Curated

ACIAD2849

CDS

2786366

2786614

249

-1

hypothetical protein; putative membrane protein

validated/Curated

0.3133

0.2169

0.39

9434.04

10.21

ACIAD2850

CDS

glxK

2786714

2787877

1164

glycerate kinase

validated/finished

0.4167

0.2887

0.54

40895.30

5.47

ACIADtRNALeu_52

tRNA

2787951

2788036

Leu tRNA

validated/Curated

ACIAD2851

CDS

2788453

2788773

321

-2

conserved hypothetical protein

validated/Curated

0.3676

0.3458

0.65

12318.66

4.18

ACIAD2852

CDS

folP

2788851

2789702

852

-3

7,8-dihydropteroate synthase

validated/Curated

0.4319

0.3204

0.53

30831.05

5.56

ACIAD2853

CDS

ftsH

2789831

2791726

1896

-1

cell division protein

validated/Curated

0.4241

0.3054

0.70

69597.02

5.73

ACIAD2854

CDS

ftsJ

2791860

2792510

651

-3

cell division protein (filamentous temperature sensitivity, 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)

validated/Curated

0.4163

0.3088

0.59

24047.82

9.47

Sequence	Id	Begin	End	Comments
	RPTR1412726	2786172	2786338	1 repeats
	RPTR1412727	2787951	2788116	1 repeats

Sequence

Begin

End

Comments

RPTR1412726

2786172

2786338

1 repeats

RPTR1412727

2787951

2788116

1 repeats

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)