MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD3054	CDS	infC	2980636	2981187	552	-2	protein chain initiation factor IF-3	2	validated/Curated	no	no	0.4076	0.3207	0.71	20773.19	9.48
ACIAD3055	CDS	thrS	2981193	2983115	1923	-3	threonyl-tRNA synthetase	2	validated/Curated	no	no	0.4306	0.3588	0.67	72993.50	5.53
ACIAD3056	CDS		2983528	2985171	1644	+1	putative AMP-dependent synthetase/ligase	1	validated/Curated	no	no	0.4465	0.3686	0.59	60746.37	5.64
ACIAD3057	CDS		2985256	2985789	534	-2	conserved hypothetical protein	3	validated/Curated	no	no	0.4232	0.3034	0.65	20472.36	9.19
ACIAD3058	CDS	ptsO	2985792	2986067	276	-3	phosphocarrier protein (HPr-like) NPr, nitrogen related, exchanges phosphate with Enzyme I	3	validated/Curated	no	no	0.4094	0.3587	0.62	9820.06	5.76
ACIAD3059	CDS		2986058	2986909	852	-1	conserved hypothetical protein	3	validated/Curated	no	no	0.4190	0.3768	0.55	32680.16	6.19
ACIAD3060	CDS	panC	2986931	2987776	846	-1	pantoate--beta-alanine ligase (Pantothenate synthetase) (Pantoate activating enzyme)	1	validated/Curated	no	no	0.4291	0.3582	0.59	31207.63	5.65
ACIAD3061	CDS	panB	2987780	2988532	753	-1	3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate hydroxymethyltransferase)	1	validated/Curated	no	no	0.4422	0.3386	0.61	26880.76	4.97
ACIAD3062	CDS	folK	2988627	2989115	489	-3	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HPPK) (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PPPK)	1	validated/Curated	no	no	0.4417	0.3742	0.51	18555.63	5.40
ACIAD3063	CDS	pcnB	2989112	2990569	1458	-1	poly(A) polymerase I (PAP)	1	validated/Curated	no	no	0.4540	0.3683	0.57	55580.54	9.59
ACIAD3064	CDS		2990694	2991080	387	-3	putative DNA uptake protein and/or related DNA-binding protein	1	validated/Curated	no	no	0.3979	0.3256	0.56	14529.96	9.82
ACIAD3065	CDS		2991084	2991851	768	-3	putative nucleoside triphosphate pyrophosphohydrolase (MazG)	3	validated/Curated	no	no	0.4076	0.3203	0.60	29440.05	5.05
ACIAD3067	CDS		2991965	2992747	783	+2	putative short-chain dehydrogenase	1	validated/Curated	no	no	0.4304	0.3678	0.55	28587.54	6.87
ACIAD3068	CDS	relA	2992794	2995100	2307	-3	GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ((p)ppGpp synthetase)	1	validated/Curated	no	no	0.4239	0.3602	0.60	88462.46	6.40
ACIAD3069	CDS	rumA	2995133	2996524	1392	-1	23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M- 5-U1939)-methyltransferase)	3	validated/Curated	no	no	0.4131	0.2996	0.59	52183.55	7.18

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD3054

CDS

infC

2980636

2981187

552

-2

protein chain initiation factor IF-3

validated/Curated

0.4076

0.3207

0.71

20773.19

9.48

ACIAD3055

CDS

thrS

2981193

2983115

1923

-3

threonyl-tRNA synthetase

validated/Curated

0.4306

0.3588

0.67

72993.50

5.53

ACIAD3056

CDS

2983528

2985171

1644

putative AMP-dependent synthetase/ligase

validated/Curated

0.4465

0.3686

0.59

60746.37

5.64

ACIAD3057

CDS

2985256

2985789

534

-2

conserved hypothetical protein

validated/Curated

0.4232

0.3034

0.65

20472.36

9.19

ACIAD3058

CDS

ptsO

2985792

2986067

276

-3

phosphocarrier protein (HPr-like) NPr, nitrogen related, exchanges phosphate with Enzyme I

validated/Curated

0.4094

0.3587

0.62

9820.06

5.76

ACIAD3059

CDS

2986058

2986909

852

-1

conserved hypothetical protein

validated/Curated

0.4190

0.3768

0.55

32680.16

6.19

ACIAD3060

CDS

panC

2986931

2987776

846

-1

pantoate--beta-alanine ligase (Pantothenate synthetase) (Pantoate activating enzyme)

validated/Curated

0.4291

0.3582

0.59

31207.63

5.65

ACIAD3061

CDS

panB

2987780

2988532

753

-1

3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate hydroxymethyltransferase)

validated/Curated

0.4422

0.3386

0.61

26880.76

4.97

ACIAD3062

CDS

folK

2988627

2989115

489

-3

2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HPPK) (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PPPK)

validated/Curated

0.4417

0.3742

0.51

18555.63

5.40

ACIAD3063

CDS

pcnB

2989112

2990569

1458

-1

poly(A) polymerase I (PAP)

validated/Curated

0.4540

0.3683

0.57

55580.54

9.59

ACIAD3064

CDS

2990694

2991080

387

-3

putative DNA uptake protein and/or related DNA-binding protein

validated/Curated

0.3979

0.3256

0.56

14529.96

9.82

ACIAD3065

CDS

2991084

2991851

768

-3

putative nucleoside triphosphate pyrophosphohydrolase (MazG)

validated/Curated

0.4076

0.3203

0.60

29440.05

5.05

ACIAD3067

CDS

2991965

2992747

783

putative short-chain dehydrogenase

validated/Curated

0.4304

0.3678

0.55

28587.54

6.87

ACIAD3068

CDS

relA

2992794

2995100

2307

-3

GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ((p)ppGpp synthetase)

validated/Curated

0.4239

0.3602

0.60

88462.46

6.40

ACIAD3069

CDS

rumA

2995133

2996524

1392

-1

23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M- 5-U1939)-methyltransferase)

validated/Curated

0.4131

0.2996

0.59

52183.55

7.18

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)