MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD3116	CDS	fabI	3046323	3047198	876	-3	NADH-dependent enoyl-ACP reductase	2	validated/finished	no	no	0.4315	0.3014	0.68	31488.80	5.91
ACIAD3117	CDS		3047270	3048001	732	-1	conserved hypothetical protein; putative membrane protein	2	validated/finished	no	no	0.4112	0.3525	0.66	26029.85	6.77
ACIAD3118	CDS	orn	3048223	3048774	552	-2	oligoribonuclease	1	validated/Curated	no	no	0.3949	0.3478	0.68	21550.82	6.09
ACIAD3119	CDS		3048897	3049955	1059	+3	putative ribosome biogenesis GTPase RsgA	1	validated/Curated	no	no	0.4504	0.3598	0.54	39478.60	6.15
ACIAD3120	CDS		3050026	3050463	438	+1	putative rhodanese-related sulfurtransferase	2	validated/Curated	no	no	0.4201	0.3767	0.55	16196.19	9.86
ACIAD3121	CDS	grx	3050476	3050733	258	+1	glutaredoxin	2	validated/Curated	no	no	0.4070	0.3488	0.67	9825.99	6.96
ACIAD3122	CDS	secB	3050763	3051218	456	+3	molecular chaperone in protein export	2	validated/Curated	no	no	0.3772	0.2434	0.73	16990.53	4.22
ACIAD3123	CDS		3051278	3051691	414	-1	putative precursor of Cytochrome b(562) (CybC)	1	validated/Curated	no	no	0.3623	0.3406	0.58	14847.47	9.60
ACIAD3125	CDS	dfp	3051780	3053060	1281	-3	bifunctional protein [Includes: 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding]	1	validated/Curated	no	no	0.4551	0.3607	0.56	46115.16	6.12
ACIAD3126	CDS	radC	3053102	3053917	816	+2	DNA repair protein, associated with replication forks	3	validated/Curated	no	no	0.3836	0.3088	0.57	31088.34	7.17
ACIAD3127	CDS		3053914	3054825	912	+1	conserved hypothetical protein; putative membrane protein	1	validated/Curated	no	no	0.4287	0.3816	0.56	34300.83	5.98
ACIAD3128	CDS		3054846	3055904	1059	-3	putative oxidoreductase	1	validated/Curated	no	no	0.4344	0.3853	0.52	39721.36	6.21
ACIAD3129	CDS		3055982	3056911	930	+2	putative transcriptional regulator (LysR family)	1	validated/Curated	no	no	0.3828	0.3290	0.54	35673.60	8.37
ACIAD3130	CDS		3057063	3057686	624	+3	putative glutathione S-transferase	1	validated/Curated	no	no	0.4135	0.3702	0.57	24084.43	7.12
ACIAD3131	CDS		3057700	3058551	852	-2	putative phosphoesterase (PHP family)	1	validated/Curated	no	no	0.4085	0.2887	0.57	31551.68	5.78
ACIAD3132	CDS		3058597	3059211	615	+1	putative intracellular septation protein (IspZ)	3	validated/Curated	no	no	0.3393	0.3288	0.67	25631.78	9.46
ACIAD3133	CDS		3059244	3059546	303	+3	conserved hypothetical protein	3	validated/Curated	no	no	0.4092	0.2970	0.66	11293.50	4.98
ACIAD3134	CDS		3059674	3059997	324	+1	conserved hypothetical protein; putative signal peptide	2	validated/Curated	no	no	0.4383	0.3611	0.64	11990.30	9.70
ACIAD3135	CDS		3060030	3061901	1872	+3	putative tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC	1	validated/Curated	no	no	0.4306	0.3317	0.58	70259.51	6.26

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD3116

CDS

fabI

3046323

3047198

876

-3

NADH-dependent enoyl-ACP reductase

validated/finished

0.4315

0.3014

0.68

31488.80

5.91

ACIAD3117

CDS

3047270

3048001

732

-1

conserved hypothetical protein; putative membrane protein

validated/finished

0.4112

0.3525

0.66

26029.85

6.77

ACIAD3118

CDS

orn

3048223

3048774

552

-2

oligoribonuclease

validated/Curated

0.3949

0.3478

0.68

21550.82

6.09

ACIAD3119

CDS

3048897

3049955

1059

putative ribosome biogenesis GTPase RsgA

validated/Curated

0.4504

0.3598

0.54

39478.60

6.15

ACIAD3120

CDS

3050026

3050463

438

putative rhodanese-related sulfurtransferase

validated/Curated

0.4201

0.3767

0.55

16196.19

9.86

ACIAD3121

CDS

grx

3050476

3050733

258

glutaredoxin

validated/Curated

0.4070

0.3488

0.67

9825.99

6.96

ACIAD3122

CDS

secB

3050763

3051218

456

molecular chaperone in protein export

validated/Curated

0.3772

0.2434

0.73

16990.53

4.22

ACIAD3123

CDS

3051278

3051691

414

-1

putative precursor of Cytochrome b(562) (CybC)

validated/Curated

0.3623

0.3406

0.58

14847.47

9.60

ACIAD3125

CDS

dfp

3051780

3053060

1281

-3

bifunctional protein [Includes: 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding]

validated/Curated

0.4551

0.3607

0.56

46115.16

6.12

ACIAD3126

CDS

radC

3053102

3053917

816

DNA repair protein, associated with replication forks

validated/Curated

0.3836

0.3088

0.57

31088.34

7.17

ACIAD3127

CDS

3053914

3054825

912

conserved hypothetical protein; putative membrane protein

validated/Curated

0.4287

0.3816

0.56

34300.83

5.98

ACIAD3128

CDS

3054846

3055904

1059

-3

putative oxidoreductase

validated/Curated

0.4344

0.3853

0.52

39721.36

6.21

ACIAD3129

CDS

3055982

3056911

930

putative transcriptional regulator (LysR family)

validated/Curated

0.3828

0.3290

0.54

35673.60

8.37

ACIAD3130

CDS

3057063

3057686

624

putative glutathione S-transferase

validated/Curated

0.4135

0.3702

0.57

24084.43

7.12

ACIAD3131

CDS

3057700

3058551

852

-2

putative phosphoesterase (PHP family)

validated/Curated

0.4085

0.2887

0.57

31551.68

5.78

ACIAD3132

CDS

3058597

3059211

615

putative intracellular septation protein (IspZ)

validated/Curated

0.3393

0.3288

0.67

25631.78

9.46

ACIAD3133

CDS

3059244

3059546

303

conserved hypothetical protein

validated/Curated

0.4092

0.2970

0.66

11293.50

4.98

ACIAD3134

CDS

3059674

3059997

324

conserved hypothetical protein; putative signal peptide

validated/Curated

0.4383

0.3611

0.64

11990.30

9.70

ACIAD3135

CDS

3060030

3061901

1872

putative tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC

validated/Curated

0.4306

0.3317

0.58

70259.51

6.26

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)