MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD0842	CDS		829418	830221	804	+2	conserved hypothetical protein; putative membrane protein	3	validated/Curated	no	no	0.4279	0.3507	0.58	27881.09	9.70
ACIAD0843	CDS		830291	830422	132	+2	hypothetical protein	3	validated/Curated	no	no	0.3333	0.2727	0.48	4737.99	5.05
ACIAD0844	CDS		830419	831126	708	+1	putative transcriptional regulator (GntR-family)	1	validated/Curated	no	no	0.4336	0.4195	0.47	27485.71	6.56
ACIAD0846	CDS		831224	834673	3450	+2	putative chromosome segregation ATPases	1	validated/Curated	no	no	0.4354	0.4070	0.55	133052.20	5.42
ACIAD0847	CDS		834675	835652	978	+3	putative cell division protein (ZipA-like)	3	validated/Curated	no	no	0.4305	0.3313	0.56	36254.60	4.70
ACIAD0848	CDS	ligA	835730	837760	2031	+2	DNA ligase	2	validated/Curated	no	no	0.4549	0.3619	0.57	75656.30	5.41
ACIAD0849	CDS		837903	838958	1056	-3	putative dehydrogenase	1	validated/Curated	no	no	0.4214	0.3352	0.59	38806.44	6.01
ACIAD0850	CDS		839089	839664	576	+1	hypothetical protein; putative signal peptide	3	validated/Curated	no	no	0.3264	0.2344	0.64	21626.50	8.87
ACIAD0851	CDS		839668	839868	201	+1	conserved hypothetical protein	3	validated/Curated	no	no	0.2935	0.3134	0.51	7656.82	9.40
ACIAD0852	CDS	bfrA	840124	840588	465	+1	bacterioferritin	3	validated/Curated	no	no	0.3935	0.2968	0.71	18008.79	4.78
ACIAD0853	CDS		840816	841574	759	+3	hypothetical protein	3	validated/Curated	no	no	0.3992	0.3202	0.64	27373.74	4.10
ACIAD0854	CDS	bcp	841642	842217	576	-2	bacterioferritin comigratory protein	1	validated/Curated	no	no	0.3750	0.3125	0.65	21602.77	8.79
ACIAD0855	CDS		842318	843076	759	+2	putative carboxylesterase, biotin biosynthesis (BioH)	3	validated/Curated	no	no	0.3755	0.2964	0.51	27985.24	6.33
ACIAD0856	CDS	bioA	843134	844462	1329	+2	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	1	validated/Curated	no	no	0.4229	0.3634	0.61	49788.36	5.74
ACIAD0857	CDS	bioF	844449	845606	1158	+3	8-amino-7-oxononanoate synthase	1	validated/Curated	no	no	0.4119	0.3523	0.61	43336.98	6.22
ACIAD0858	CDS		845597	846364	768	+2	putative biotin biosynthesis protein (BioC)	3	validated/Curated	no	no	0.3971	0.3438	0.59	29406.29	6.51
ACIAD0859	CDS	bioD	846361	847002	642	+1	dethiobiotin synthetase (Dethiobiotin synthase) (DTB synthetase) (DTBS)	3	validated/Curated	no	no	0.3832	0.3271	0.58	23948.63	5.34
ACIAD0860	CDS		847070	848185	1116	-1	hypothetical protein; putative signal peptide	3	validated/Curated	no	no	0.2885	0.1667	0.60	41643.42	4.73
ACIAD0861	CDS		848321	849262	942	-1	putative ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) (Uracil hydrolyase)	3	validated/Curated	no	no	0.4437	0.3312	0.60	35979.71	9.79
ACIAD0862	CDS	spcB	849304	849894	591	-2	chromosome condensation and segregation factor	1	validated/Curated	no	no	0.4061	0.3350	0.56	22358.92	6.95
ACIAD0863	CDS	scpA	849891	850682	792	-3	chromosome condensation and partitioning factor	1	validated/Curated	no	no	0.4192	0.3485	0.58	29608.45	4.88
ACIAD0864	CDS		850965	851669	705	+3	putative acetyltransferase	3	validated/Curated	no	no	0.4071	0.3447	0.58	27447.20	6.57
ACIAD0865	CDS		851697	852332	636	-3	putative translation factor	1	validated/finished	no	no	0.4198	0.3113	0.60	23119.66	5.66
ACIAD0866	CDS		852416	853078	663	-1	conserved hypothetical protein	3	validated/Curated	no	no	0.4359	0.3575	0.58	25190.40	5.92
ACIAD0868	CDS		853175	853735	561	+2	conserved hypothetical protein	2	validated/Curated	no	no	0.4135	0.2995	0.64	20999.10	4.53
ACIAD0869	CDS	rpmF	853807	853992	186	+1	50S ribosomal protein L32	2	validated/Curated	no	no	0.4785	0.3387	0.75	7075.59	10.78
ACIAD0870	CDS	fabD	854146	855132	987	+1	malonyl-CoA-[acyl-carrier-protein] transacylase	2	validated/Curated	no	no	0.4519	0.3161	0.63	34450.86	4.86
ACIAD0871	CDS	fabG	855129	855863	735	+3	3-oxoacyl-[acyl-carrier-protein] reductase	2	validated/inProgress	no	no	0.4258	0.2939	0.70	26139.72	6.13
ACIAD0872	CDS	acpP	855841	856185	345	+1	acyl carrier protein (ACP)	3	validated/Curated	no	no	0.3710	0.2870	0.67	12973.40	4.72
ACIAD0873	CDS		856374	856850	477	+3	putative potassium binding protein Kbp	3	validated/Curated	no	no	0.3690	0.2579	0.71	17424.97	5.35
ACIAD0874	CDS		856853	858085	1233	-1	conserved hypothetical protein ; putative phage related protein	3	validated/Curated	no	no	0.2798	0.1800	0.54	47892.22	8.52
ACIAD0875	CDS	thiD	858160	858939	780	-2	bifunctional protein [Includes: hydroxy-methylpyrimidine kinase (HMP kinase); hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase)]	2	validated/Curated	no	no	0.4436	0.2962	0.60	27437.28	5.02
ACIAD0876	CDS		859037	859711	675	+2	putative hydrolase	1	validated/Curated	no	no	0.4059	0.3111	0.57	25444.00	5.26
ACIAD0877	CDS		859872	860993	1122	+3	putative acyltransferase	3	validated/Curated	no	no	0.3717	0.3476	0.51	42714.64	9.43
ACIAD0878	CDS	hemJ	861018	861470	453	-3	protoporphyrinogen oxidase	1	validated/finished	no	no	0.3951	0.3510	0.64	17865.52	9.23
ACIAD0879	CDS	fabB	861789	863018	1230	-3	beta-ketoacyl-ACP synthase I (3-oxoacyl-[acyl-carrier-protein] synthase I)	2	validated/Curated	no	no	0.4382	0.3146	0.72	43141.76	5.25
ACIAD0880	CDS		863318	864703	1386	+2	conserved hypothetical protein	3	validated/Curated	no	no	0.4185	0.2814	0.58	50735.25	6.31
ACIAD0881	CDS	rpsL	864888	865262	375	+3	30S ribosomal protein S12	2	validated/Curated	no	no	0.4293	0.2560	0.78	13795.48	10.88
ACIAD0883	CDS	rpsG	865423	865893	471	+1	30S ribosomal protein S7	1	validated/Curated	no	no	0.4437	0.2675	0.77	17624.84	10.13
ACIAD0884	CDS	fusA	866071	868209	2139	+1	protein chain elongation factor EF-G, GTP-binding	2	validated/Curated	no	no	0.4320	0.3226	0.82	78793.62	5.04
ACIAD0885	CDS	tufA	868262	869491	1230	+2	protein chain elongation factor EF-Tu (duplicate of tufB)	2	validated/Curated	no	no	0.4650	0.3512	0.78	44536.99	5.22
ACIAD0886	CDS		869748	870629	882	+3	conserved hypothetical protein; putative metal-dependent hydrolase	1	validated/Curated	no	no	0.3742	0.2823	0.66	33084.81	6.94
ACIAD0887	CDS	rimI	870782	871240	459	+2	ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein S18)	1	validated/Curated	no	no	0.3660	0.2745	0.60	17315.19	5.47
ACIAD0888	CDS		871247	872062	816	-1	putative arginine-tRNA-protein transferase	1	validated/Curated	no	no	0.3848	0.3051	0.66	31989.50	6.15
ACIAD0889	CDS	aat	872087	872812	726	-1	leucyl, phenylalanyl-tRNA-protein transferase	1	validated/Curated	no	no	0.3953	0.3058	0.59	27697.67	4.97
ACIAD0890	CDS	trxB	872885	873832	948	-1	thioredoxin reductase 1	2	validated/Curated	no	no	0.4314	0.3006	0.72	33773.64	4.95
ACIAD0891	CDS		874099	877155	3057	+1	putative cell division protein, required for chromosome partitioning (FstK)	1	validated/Curated	no	no	0.4217	0.3238	0.62	113474.32	4.91
ACIAD0892	CDS		877202	877489	288	-1	conserved hypothetical protein	1	validated/Curated	no	no	0.4236	0.3125	0.64	11086.10	5.23
ACIAD0893	CDS	minE	877735	878007	273	-2	cell division topological specificity factor (reverses minC inhibition of FtsZ ring)	3	validated/Curated	no	no	0.3993	0.3516	0.59	10379.44	5.85
ACIAD0894	CDS	minD	878010	878846	837	-3	cell division inhibitor, a membrane ATPase,activates minC	3	validated/Curated	no	no	0.4026	0.2652	0.65	30830.08	5.40
ACIAD0895	CDS	minC	878889	879611	723	-3	cell division inhibitor, inhibits ftsZ ring formation	1	validated/Curated	no	no	0.3956	0.2697	0.59	26114.82	5.12
ACIAD0896	CDS		879735	880586	852	-3	conserved hypothetical protein; putative membrane protein	3	validated/Curated	no	no	0.3955	0.3486	0.62	33157.20	6.33
ACIAD0897	CDS		880798	881724	927	-2	conserved hypothetical protein; putative phospholipid/glycerol acyltransferase	1	validated/Curated	no	no	0.4088	0.3657	0.60	35277.28	8.65
ACIAD0898	CDS		881975	882628	654	+2	putative outer membrane protein	2	validated/Curated	no	no	0.4343	0.2936	0.74	22501.01	9.52
ACIAD0900	CDS	rep	882754	884793	2040	+1	ATP-dependent DNA helicase	1	validated/Curated	no	no	0.4108	0.3691	0.62	77701.14	6.43
ACIAD0901	CDS	dut	884818	885270	453	+1	deoxyuridine 5'-triphosphate nucleotidohydrolase	3	validated/Curated	no	no	0.4283	0.2980	0.73	16346.00	5.09
ACIAD0902	CDS	algC	885462	886886	1425	+3	phosphomannomutase	1	validated/Curated	no	no	0.4204	0.3453	0.56	53171.52	5.65
ACIAD0903	CDS	argB	886897	887808	912	+1	acetylglutamate kinase	1	validated/Curated	no	no	0.4408	0.3783	0.62	32303.84	5.88
ACIAD0904	CDS		887884	888714	831	+1	conserved hypothetical protein	3	validated/Curated	no	no	0.3730	0.3069	0.57	32463.90	7.77
ACIAD0905	CDS	yafJ	888813	889670	858	+3	putative glutamine amidotransferase	1	validated/finished	no	no	0.4406	0.3601	0.59	32447.89	6.78
ACIAD0907	CDS		889766	890854	1089	+2	putative transporter	3	validated/Curated	no	no	0.4362	0.4077	0.58	40283.84	9.60

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD0842

CDS

829418

830221

804

conserved hypothetical protein; putative membrane protein

validated/Curated

0.4279

0.3507

0.58

27881.09

9.70

ACIAD0843

CDS

830291

830422

132

hypothetical protein

validated/Curated

0.3333

0.2727

0.48

4737.99

5.05

ACIAD0844

CDS

830419

831126

708

putative transcriptional regulator (GntR-family)

validated/Curated

0.4336

0.4195

0.47

27485.71

6.56

ACIAD0846

CDS

831224

834673

3450

putative chromosome segregation ATPases

validated/Curated

0.4354

0.4070

0.55

133052.20

5.42

ACIAD0847

CDS

834675

835652

978

putative cell division protein (ZipA-like)

validated/Curated

0.4305

0.3313

0.56

36254.60

4.70

ACIAD0848

CDS

ligA

835730

837760

2031

DNA ligase

validated/Curated

0.4549

0.3619

0.57

75656.30

5.41

ACIAD0849

CDS

837903

838958

1056

-3

putative dehydrogenase

validated/Curated

0.4214

0.3352

0.59

38806.44

6.01

ACIAD0850

CDS

839089

839664

576

hypothetical protein; putative signal peptide

validated/Curated

0.3264

0.2344

0.64

21626.50

8.87

ACIAD0851

CDS

839668

839868

201

conserved hypothetical protein

validated/Curated

0.2935

0.3134

0.51

7656.82

9.40

ACIAD0852

CDS

bfrA

840124

840588

465

bacterioferritin

validated/Curated

0.3935

0.2968

0.71

18008.79

4.78

ACIAD0853

CDS

840816

841574

759

hypothetical protein

validated/Curated

0.3992

0.3202

0.64

27373.74

4.10

ACIAD0854

CDS

bcp

841642

842217

576

-2

bacterioferritin comigratory protein

validated/Curated

0.3750

0.3125

0.65

21602.77

8.79

ACIAD0855

CDS

842318

843076

759

putative carboxylesterase, biotin biosynthesis (BioH)

validated/Curated

0.3755

0.2964

0.51

27985.24

6.33

ACIAD0856

CDS

bioA

843134

844462

1329

adenosylmethionine-8-amino-7-oxononanoate aminotransferase

validated/Curated

0.4229

0.3634

0.61

49788.36

5.74

ACIAD0857

CDS

bioF

844449

845606

1158

8-amino-7-oxononanoate synthase

validated/Curated

0.4119

0.3523

0.61

43336.98

6.22

ACIAD0858

CDS

845597

846364

768

putative biotin biosynthesis protein (BioC)

validated/Curated

0.3971

0.3438

0.59

29406.29

6.51

ACIAD0859

CDS

bioD

846361

847002

642

dethiobiotin synthetase (Dethiobiotin synthase) (DTB synthetase) (DTBS)

validated/Curated

0.3832

0.3271

0.58

23948.63

5.34

ACIAD0860

CDS

847070

848185

1116

-1

hypothetical protein; putative signal peptide

validated/Curated

0.2885

0.1667

0.60

41643.42

4.73

ACIAD0861

CDS

848321

849262

942

-1

putative ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) (Uracil hydrolyase)

validated/Curated

0.4437

0.3312

0.60

35979.71

9.79

ACIAD0862

CDS

spcB

849304

849894

591

-2

chromosome condensation and segregation factor

validated/Curated

0.4061

0.3350

0.56

22358.92

6.95

ACIAD0863

CDS

scpA

849891

850682

792

-3

chromosome condensation and partitioning factor

validated/Curated

0.4192

0.3485

0.58

29608.45

4.88

ACIAD0864

CDS

850965

851669

705

putative acetyltransferase

validated/Curated

0.4071

0.3447

0.58

27447.20

6.57

ACIAD0865

CDS

851697

852332

636

-3

putative translation factor

validated/finished

0.4198

0.3113

0.60

23119.66

5.66

ACIAD0866

CDS

852416

853078

663

-1

conserved hypothetical protein

validated/Curated

0.4359

0.3575

0.58

25190.40

5.92

ACIAD0868

CDS

853175

853735

561

conserved hypothetical protein

validated/Curated

0.4135

0.2995

0.64

20999.10

4.53

ACIAD0869

CDS

rpmF

853807

853992

186

50S ribosomal protein L32

validated/Curated

0.4785

0.3387

0.75

7075.59

10.78

ACIAD0870

CDS

fabD

854146

855132

987

malonyl-CoA-[acyl-carrier-protein] transacylase

validated/Curated

0.4519

0.3161

0.63

34450.86

4.86

ACIAD0871

CDS

fabG

855129

855863

735

3-oxoacyl-[acyl-carrier-protein] reductase

validated/inProgress

0.4258

0.2939

0.70

26139.72

6.13

ACIAD0872

CDS

acpP

855841

856185

345

acyl carrier protein (ACP)

validated/Curated

0.3710

0.2870

0.67

12973.40

4.72

ACIAD0873

CDS

856374

856850

477

putative potassium binding protein Kbp

validated/Curated

0.3690

0.2579

0.71

17424.97

5.35

ACIAD0874

CDS

856853

858085

1233

-1

conserved hypothetical protein ; putative phage related protein

validated/Curated

0.2798

0.1800

0.54

47892.22

8.52

ACIAD0875

CDS

thiD

858160

858939

780

-2

bifunctional protein [Includes: hydroxy-methylpyrimidine kinase (HMP kinase); hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase)]

validated/Curated

0.4436

0.2962

0.60

27437.28

5.02

ACIAD0876

CDS

859037

859711

675

putative hydrolase

validated/Curated

0.4059

0.3111

0.57

25444.00

5.26

ACIAD0877

CDS

859872

860993

1122

putative acyltransferase

validated/Curated

0.3717

0.3476

0.51

42714.64

9.43

ACIAD0878

CDS

hemJ

861018

861470

453

-3

protoporphyrinogen oxidase

validated/finished

0.3951

0.3510

0.64

17865.52

9.23

ACIAD0879

CDS

fabB

861789

863018

1230

-3

beta-ketoacyl-ACP synthase I (3-oxoacyl-[acyl-carrier-protein] synthase I)

validated/Curated

0.4382

0.3146

0.72

43141.76

5.25

ACIAD0880

CDS

863318

864703

1386

conserved hypothetical protein

validated/Curated

0.4185

0.2814

0.58

50735.25

6.31

ACIAD0881

CDS

rpsL

864888

865262

375

30S ribosomal protein S12

validated/Curated

0.4293

0.2560

0.78

13795.48

10.88

ACIAD0883

CDS

rpsG

865423

865893

471

30S ribosomal protein S7

validated/Curated

0.4437

0.2675

0.77

17624.84

10.13

ACIAD0884

CDS

fusA

866071

868209

2139

protein chain elongation factor EF-G, GTP-binding

validated/Curated

0.4320

0.3226

0.82

78793.62

5.04

ACIAD0885

CDS

tufA

868262

869491

1230

protein chain elongation factor EF-Tu (duplicate of tufB)

validated/Curated

0.4650

0.3512

0.78

44536.99

5.22

ACIAD0886

CDS

869748

870629

882

conserved hypothetical protein; putative metal-dependent hydrolase

validated/Curated

0.3742

0.2823

0.66

33084.81

6.94

ACIAD0887

CDS

rimI

870782

871240

459

ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein S18)

validated/Curated

0.3660

0.2745

0.60

17315.19

5.47

ACIAD0888

CDS

871247

872062

816

-1

putative arginine-tRNA-protein transferase

validated/Curated

0.3848

0.3051

0.66

31989.50

6.15

ACIAD0889

CDS

aat

872087

872812

726

-1

leucyl, phenylalanyl-tRNA-protein transferase

validated/Curated

0.3953

0.3058

0.59

27697.67

4.97

ACIAD0890

CDS

trxB

872885

873832

948

-1

thioredoxin reductase 1

validated/Curated

0.4314

0.3006

0.72

33773.64

4.95

ACIAD0891

CDS

874099

877155

3057

putative cell division protein, required for chromosome partitioning (FstK)

validated/Curated

0.4217

0.3238

0.62

113474.32

4.91

ACIAD0892

CDS

877202

877489

288

-1

conserved hypothetical protein

validated/Curated

0.4236

0.3125

0.64

11086.10

5.23

ACIAD0893

CDS

minE

877735

878007

273

-2

cell division topological specificity factor (reverses minC inhibition of FtsZ ring)

validated/Curated

0.3993

0.3516

0.59

10379.44

5.85

ACIAD0894

CDS

minD

878010

878846

837

-3

cell division inhibitor, a membrane ATPase,activates minC

validated/Curated

0.4026

0.2652

0.65

30830.08

5.40

ACIAD0895

CDS

minC

878889

879611

723

-3

cell division inhibitor, inhibits ftsZ ring formation

validated/Curated

0.3956

0.2697

0.59

26114.82

5.12

ACIAD0896

CDS

879735

880586

852

-3

conserved hypothetical protein; putative membrane protein

validated/Curated

0.3955

0.3486

0.62

33157.20

6.33

ACIAD0897

CDS

880798

881724

927

-2

conserved hypothetical protein; putative phospholipid/glycerol acyltransferase

validated/Curated

0.4088

0.3657

0.60

35277.28

8.65

ACIAD0898

CDS

881975

882628

654

putative outer membrane protein

validated/Curated

0.4343

0.2936

0.74

22501.01

9.52

ACIAD0900

CDS

rep

882754

884793

2040

ATP-dependent DNA helicase

validated/Curated

0.4108

0.3691

0.62

77701.14

6.43

ACIAD0901

CDS

dut

884818

885270

453

deoxyuridine 5'-triphosphate nucleotidohydrolase

validated/Curated

0.4283

0.2980

0.73

16346.00

5.09

ACIAD0902

CDS

algC

885462

886886

1425

phosphomannomutase

validated/Curated

0.4204

0.3453

0.56

53171.52

5.65

ACIAD0903

CDS

argB

886897

887808

912

acetylglutamate kinase

validated/Curated

0.4408

0.3783

0.62

32303.84

5.88

ACIAD0904

CDS

887884

888714

831

conserved hypothetical protein

validated/Curated

0.3730

0.3069

0.57

32463.90

7.77

ACIAD0905

CDS

yafJ

888813

889670

858

putative glutamine amidotransferase

validated/finished

0.4406

0.3601

0.59

32447.89

6.78

ACIAD0907

CDS

889766

890854

1089

putative transporter

validated/Curated

0.4362

0.4077

0.58

40283.84

9.60

Sequence	Id	Begin	End	Comments
	RPTR1412674	868299	869492	1 repeats
	RPTR1412675	877567	877687	2 repeats

Sequence

Begin

End

Comments

RPTR1412674

868299

869492

1 repeats

RPTR1412675

877567

877687

2 repeats

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)