MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ABAYE0523	CDS	radC	538417	539169	753	-1	DNA repair protein, associated with replication forks	3	validated/finished	no	no	0.3997	0.2948	0.46	28443.42	7.29
ABAYE0524	CDS	dfp	539237	540490	1254	+2	fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase	3	automatic/finished	no	no	0.4370	0.2895	0.57	44803.68	5.79
ABAYE0525	CDS	secF	540556	541521	966	-1	Sec translocon accessory complex subunit SecF	2	automatic/finished	no	no	0.4130	0.3447	0.68	35219.90	6.54
ABAYE0526	CDS	secD	541530	543431	1902	-2	Sec translocon accessory complex subunit SecD	2	automatic/finished	no	no	0.4211	0.3281	0.60	69347.29	9.10
ABAYE0527	CDS	yajC	543483	543812	330	-2	Sec translocon accessory complex subunit YajC	4	automatic/finished	no	no	0.4152	0.2909	0.74	11732.34	9.23
ABAYE0528	CDS	tgt	543911	545044	1134	-3	tRNA-guanine transglycosylase	2	automatic/finished	no	no	0.4206	0.3413	0.64	42910.61	6.34
ABAYE0529	CDS		545220	545789	570	-2	conserved hypothetical protein	3	validated/finished	no	no	0.3702	0.3684	0.56	21965.29	5.77
ABAYE0530	CDS		545876	547024	1149	-3	conserved hypothetical protein; putative membrane protein	3	validated/finished	no	no	0.3386	0.2611	0.54	44998.34	6.83
ABAYE0531	CDS	queA	547058	548095	1038	-3	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase	1	automatic/finished	no	no	0.4181	0.3324	0.57	38698.78	5.38
ABAYEtRNA13	tRNA		548277	548363	87	+1	Leu tRNA		automatic/finished	no	no
ABAYE0532	CDS		548541	549608	1068	+3	putative integrase/recombinase	3	validated/finished	no	no	0.3783	0.2640	0.51	41034.92	9.93
ABAYE0533	CDS		549636	549932	297	-2	hypothetical protein	5	validated/finished	no	no	0.3670	0.3232	0.56	11348.66	6.53
ABAYE0534	CDS		549929	550150	222	-3	hypothetical protein	5	validated/finished	no	no	0.3784	0.2432	0.49	8403.24	5.24
ABAYE0535	CDS		550160	550897	738	-3	putative DNA exonuclease X	5	validated/finished	no	no	0.3767	0.2846	0.56	28014.23	6.90
ABAYE0536	CDS		550907	551260	354	-3	putative Single-strand binding protein (Helix-destabilizing protein)	3	validated/finished	no	no	0.4096	0.3390	0.51	13364.59	9.37
ABAYE0537	CDS		551248	551565	318	-1	hypothetical protein	3	validated/finished	no	no	0.3805	0.2830	0.45	11913.25	6.97
ABAYE0538	CDS		551558	551728	171	-3	hypothetical protein	4	validated/finished	no	no	0.3567	0.3158	0.54	6727.56	9.42
ABAYE0539	CDS		551718	552296	579	-2	hypothetical protein	4	validated/finished	no	no	0.3748	0.2798	0.59	22179.86	4.74
ABAYE0540	CDS		552335	552667	333	-3	hypothetical protein	3	validated/finished	no	no	0.3724	0.3604	0.54	12966.18	5.50
ABAYE0541	CDS		552664	555402	2739	-1	conserved hypothetical protein; putative Phage-related protein	4	validated/finished	no	no	0.4096	0.3384	0.56	105556.78	8.26
ABAYE0542	CDS		555496	555756	261	-1	hypothetical protein	3	validated/finished	no	no	0.3563	0.3218	0.52	10205.38	9.45
ABAYE0543	CDS		555777	556118	342	+3	conserved hypothetical protein; Putative phage-related DNA-binding protein	5	validated/finished	no	no	0.3801	0.3246	0.50	13310.39	5.21
ABAYE0544	CDS		556163	556378	216	-3	hypothetical protein	5	validated/finished	no	no	0.3704	0.3889	0.54	8385.41	5.77
ABAYE0545	CDS		556503	557318	816	-2	hypothetical protein; putative phage-related protein	5	validated/finished	no	no	0.3885	0.3824	0.49	30912.05	7.26
ABAYE0546	CDS		557426	557620	195	-3	hypothetical protein	4	validated/finished	no	no	0.3795	0.3231	0.53	7445.30	9.82
ABAYE0547	CDS		557636	557728	93	-3	hypothetical protein	3	validated/finished	no	no	0.4516	0.3548	0.48	3223.66	10.86
ABAYE0548	CDS		557930	558808	879	+2	hypothetical protein; putative NAD-dependent DNA ligase	3	validated/finished	no	no	0.3436	0.2355	0.59	33653.90	5.52
ABAYE0549	CDS		558808	559089	282	+1	conserved hypothetical protein; putative exported protein	3	validated/finished	no	no	0.3191	0.1809	0.65	10330.42	5.28
ABAYE0550	CDS		559405	559623	219	-1	conserved hypothetical protein; putative phage related protein	5	validated/finished	no	no	0.3607	0.2192	0.62	8311.09	5.05
ABAYE0551	CDS		559602	559841	240	-2	conserved hypothetical protein; putative phage related protein	3	validated/finished	no	no	0.4583	0.3125	0.50	8981.06	8.87
ABAYE0552	CDS		559971	561284	1314	-2	phage-related late control gene protein (GPD-like)	3	validated/finished	no	no	0.3957	0.3105	0.51	48844.22	6.76
ABAYE0553	CDS		561285	561725	441	-2	phage-related protein; putative phage tail protein (GPU_like)	3	validated/finished	no	no	0.4104	0.3401	0.47	16415.46	9.40
ABAYE0554	CDS		561731	564181	2451	-3	putative phage-related membrane protein	1	validated/finished	no	no	0.4300	0.3207	0.52	86444.68	9.52
ABAYE0555	CDS		564335	564676	342	-3	putative phage-related tail protein (GPE+E'-like)	4	validated/finished	no	no	0.4211	0.3684	0.56	12585.00	5.59
ABAYE0556	CDS		564743	565261	519	-3	phage-related major tail tube protein (FII-like)	1	validated/finished	no	no	0.4162	0.3526	0.59	18994.80	4.86
ABAYE0557	CDS		565274	566449	1176	-3	phage-related major tail sheath protein ( FI-like)	1	validated/finished	no	no	0.4456	0.3036	0.58	42319.52	5.37
ABAYE0558	CDS		566599	568551	1953	-1	hypothetical protein; putative Phage-related tail fibre protein	3	validated/finished	no	no	0.3538	0.2304	0.49	72305.44	5.61
ABAYE0559	CDS		568563	569168	606	-2	putative phage tail protein	1	validated/finished	no	no	0.3696	0.2772	0.59	22890.99	4.88
ABAYE0560	CDS		569168	570070	903	-3	phage-related baseplate assembly protein (GPJ-like)	4	validated/finished	no	no	0.3721	0.1827	0.61	33612.52	5.04
ABAYE0561	CDS		570067	570414	348	-1	phage-related baseplate assembly protein (GPW-like)	5	validated/finished	no	no	0.4052	0.3362	0.44	12939.24	4.52
ABAYE0562	CDS		570411	571043	633	-2	phage-related baseplate protein (GPV-like)	1	validated/finished	no	no	0.4313	0.2844	0.44	21947.46	4.76
ABAYE0563	CDS		571116	571565	450	-2	phage-related tail completion protein (GPS-like)	3	validated/finished	no	no	0.3733	0.2600	0.44	17128.09	10.99
ABAYE0564	CDS		571562	572089	528	-3	phage-related tail completion protein (GPR-like)	5	validated/finished	no	no	0.3845	0.2898	0.53	19838.84	4.46
ABAYE0565	CDS		572086	572928	843	-1	putative phage-related cell wall hydrolase	4	validated/finished	no	no	0.3713	0.2491	0.60	31689.10	9.17
ABAYE0566	CDS		572913	573182	270	-2	putative phage-related membrane protein	1	validated/finished	no	no	0.3963	0.3222	0.54	9965.48	9.51
ABAYE0567	CDS		573179	573547	369	-3	putative phage-related membrane protein	4	validated/finished	no	no	0.3740	0.2358	0.51	13032.98	9.58
ABAYE0568	CDS		573538	573747	210	-1	phage-related tail protein (GPX-like)	4	validated/finished	no	no	0.4095	0.2857	0.71	7920.76	4.84
ABAYE0569	CDS		573748	574251	504	-1	putative phage-related capsid completion protein	3	validated/finished	no	no	0.4048	0.2917	0.48	18707.78	9.20
ABAYE0570	CDS		574304	575050	747	-3	putative Phage small terminase subunit precursor	1	validated/finished	no	no	0.3922	0.2892	0.59	27708.82	6.64
ABAYE0571	CDS		575061	576071	1011	-2	phage-related capsid protein precursor (GPN-like)	2	validated/finished	no	no	0.4174	0.3205	0.63	36860.02	5.29
ABAYE0572	CDS		576103	576930	828	-1	phage-related capsid scaffolding protein (GPO-like)	1	validated/finished	no	no	0.3684	0.2500	0.65	30756.08	4.96
ABAYE0573	CDS		577062	578876	1815	+3	phage-related terminase, ATPase subunit (GPP-like)	4	validated/finished	no	no	0.4006	0.3322	0.57	68931.90	6.56
ABAYE0574	CDS		578876	579874	999	+2	phage-related portal vertex protein (GPQ-like)	1	validated/finished	no	no	0.3954	0.3483	0.56	37869.38	5.87
ABAYE0575	CDS		581140	582474	1335	+1	Histidine kinase	1	automatic/finished	no	no	0.3805	0.3461	0.51	50312.50	5.78
ABAYE0576	CDS	glnE	582543	585293	2751	+3	Glutamine synthetase adenylyl-L-tyrosine phosphorylase / Glutamine synthetase adenylyl transferase	1	automatic/finished	no	no	0.4253	0.3435	0.50	104469.64	5.35
ABAYE0577	CDS	ilvE	585306	586244	939	+3	Branched-chain-amino-acid aminotransferase	2	automatic/finished	no	no	0.4111	0.2716	0.75	34861.25	6.06
ABAYE0578	CDS		586312	587202	891	+1	conserved protein of unknown function	5	automatic/finished	no	no	0.3883	0.2929	0.49	33539.40	9.19
ABAYE0579	CDS	gtrOC	587225	588253	1029	+2	Glycosyltransferase	1	automatic/finished	no	no	0.3712	0.3236	0.54	39828.96	8.16
ABAYE0580	CDS		588250	589005	756	+1	NodB homology domain-containing protein	1	automatic/finished	no	no	0.3942	0.3294	0.58	28740.25	9.02

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ABAYE0523

CDS

radC

538417

539169

753

-1

DNA repair protein, associated with replication forks

validated/finished

0.3997

0.2948

0.46

28443.42

7.29

ABAYE0524

CDS

dfp

539237

540490

1254

fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase

automatic/finished

0.4370

0.2895

0.57

44803.68

5.79

ABAYE0525

CDS

secF

540556

541521

966

-1

Sec translocon accessory complex subunit SecF

automatic/finished

0.4130

0.3447

0.68

35219.90

6.54

ABAYE0526

CDS

secD

541530

543431

1902

-2

Sec translocon accessory complex subunit SecD

automatic/finished

0.4211

0.3281

0.60

69347.29

9.10

ABAYE0527

CDS

yajC

543483

543812

330

-2

Sec translocon accessory complex subunit YajC

automatic/finished

0.4152

0.2909

0.74

11732.34

9.23

ABAYE0528

CDS

tgt

543911

545044

1134

-3

tRNA-guanine transglycosylase

automatic/finished

0.4206

0.3413

0.64

42910.61

6.34

ABAYE0529

CDS

545220

545789

570

-2

conserved hypothetical protein

validated/finished

0.3702

0.3684

0.56

21965.29

5.77

ABAYE0530

CDS

545876

547024

1149

-3

conserved hypothetical protein; putative membrane protein

validated/finished

0.3386

0.2611

0.54

44998.34

6.83

ABAYE0531

CDS

queA

547058

548095

1038

-3

tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase

automatic/finished

0.4181

0.3324

0.57

38698.78

5.38

ABAYEtRNA13

tRNA

548277

548363

Leu tRNA

automatic/finished

ABAYE0532

CDS

548541

549608

1068

putative integrase/recombinase

validated/finished

0.3783

0.2640

0.51

41034.92

9.93

ABAYE0533

CDS

549636

549932

297

-2

hypothetical protein

validated/finished

0.3670

0.3232

0.56

11348.66

6.53

ABAYE0534

CDS

549929

550150

222

-3

hypothetical protein

validated/finished

0.3784

0.2432

0.49

8403.24

5.24

ABAYE0535

CDS

550160

550897

738

-3

putative DNA exonuclease X

validated/finished

0.3767

0.2846

0.56

28014.23

6.90

ABAYE0536

CDS

550907

551260

354

-3

putative Single-strand binding protein (Helix-destabilizing protein)

validated/finished

0.4096

0.3390

0.51

13364.59

9.37

ABAYE0537

CDS

551248

551565

318

-1

hypothetical protein

validated/finished

0.3805

0.2830

0.45

11913.25

6.97

ABAYE0538

CDS

551558

551728

171

-3

hypothetical protein

validated/finished

0.3567

0.3158

0.54

6727.56

9.42

ABAYE0539

CDS

551718

552296

579

-2

hypothetical protein

validated/finished

0.3748

0.2798

0.59

22179.86

4.74

ABAYE0540

CDS

552335

552667

333

-3

hypothetical protein

validated/finished

0.3724

0.3604

0.54

12966.18

5.50

ABAYE0541

CDS

552664

555402

2739

-1

conserved hypothetical protein; putative Phage-related protein

validated/finished

0.4096

0.3384

0.56

105556.78

8.26

ABAYE0542

CDS

555496

555756

261

-1

hypothetical protein

validated/finished

0.3563

0.3218

0.52

10205.38

9.45

ABAYE0543

CDS

555777

556118

342

conserved hypothetical protein; Putative phage-related DNA-binding protein

validated/finished

0.3801

0.3246

0.50

13310.39

5.21

ABAYE0544

CDS

556163

556378

216

-3

hypothetical protein

validated/finished

0.3704

0.3889

0.54

8385.41

5.77

ABAYE0545

CDS

556503

557318

816

-2

hypothetical protein; putative phage-related protein

validated/finished

0.3885

0.3824

0.49

30912.05

7.26

ABAYE0546

CDS

557426

557620

195

-3

hypothetical protein

validated/finished

0.3795

0.3231

0.53

7445.30

9.82

ABAYE0547

CDS

557636

557728

-3

hypothetical protein

validated/finished

0.4516

0.3548

0.48

3223.66

10.86

ABAYE0548

CDS

557930

558808

879

hypothetical protein; putative NAD-dependent DNA ligase

validated/finished

0.3436

0.2355

0.59

33653.90

5.52

ABAYE0549

CDS

558808

559089

282

conserved hypothetical protein; putative exported protein

validated/finished

0.3191

0.1809

0.65

10330.42

5.28

ABAYE0550

CDS

559405

559623

219

-1

conserved hypothetical protein; putative phage related protein

validated/finished

0.3607

0.2192

0.62

8311.09

5.05

ABAYE0551

CDS

559602

559841

240

-2

conserved hypothetical protein; putative phage related protein

validated/finished

0.4583

0.3125

0.50

8981.06

8.87

ABAYE0552

CDS

559971

561284

1314

-2

phage-related late control gene protein (GPD-like)

validated/finished

0.3957

0.3105

0.51

48844.22

6.76

ABAYE0553

CDS

561285

561725

441

-2

phage-related protein; putative phage tail protein (GPU_like)

validated/finished

0.4104

0.3401

0.47

16415.46

9.40

ABAYE0554

CDS

561731

564181

2451

-3

putative phage-related membrane protein

validated/finished

0.4300

0.3207

0.52

86444.68

9.52

ABAYE0555

CDS

564335

564676

342

-3

putative phage-related tail protein (GPE+E'-like)

validated/finished

0.4211

0.3684

0.56

12585.00

5.59

ABAYE0556

CDS

564743

565261

519

-3

phage-related major tail tube protein (FII-like)

validated/finished

0.4162

0.3526

0.59

18994.80

4.86

ABAYE0557

CDS

565274

566449

1176

-3

phage-related major tail sheath protein ( FI-like)

validated/finished

0.4456

0.3036

0.58

42319.52

5.37

ABAYE0558

CDS

566599

568551

1953

-1

hypothetical protein; putative Phage-related tail fibre protein

validated/finished

0.3538

0.2304

0.49

72305.44

5.61

ABAYE0559

CDS

568563

569168

606

-2

putative phage tail protein

validated/finished

0.3696

0.2772

0.59

22890.99

4.88

ABAYE0560

CDS

569168

570070

903

-3

phage-related baseplate assembly protein (GPJ-like)

validated/finished

0.3721

0.1827

0.61

33612.52

5.04

ABAYE0561

CDS

570067

570414

348

-1

phage-related baseplate assembly protein (GPW-like)

validated/finished

0.4052

0.3362

0.44

12939.24

4.52

ABAYE0562

CDS

570411

571043

633

-2

phage-related baseplate protein (GPV-like)

validated/finished

0.4313

0.2844

0.44

21947.46

4.76

ABAYE0563

CDS

571116

571565

450

-2

phage-related tail completion protein (GPS-like)

validated/finished

0.3733

0.2600

0.44

17128.09

10.99

ABAYE0564

CDS

571562

572089

528

-3

phage-related tail completion protein (GPR-like)

validated/finished

0.3845

0.2898

0.53

19838.84

4.46

ABAYE0565

CDS

572086

572928

843

-1

putative phage-related cell wall hydrolase

validated/finished

0.3713

0.2491

0.60

31689.10

9.17

ABAYE0566

CDS

572913

573182

270

-2

putative phage-related membrane protein

validated/finished

0.3963

0.3222

0.54

9965.48

9.51

ABAYE0567

CDS

573179

573547

369

-3

putative phage-related membrane protein

validated/finished

0.3740

0.2358

0.51

13032.98

9.58

ABAYE0568

CDS

573538

573747

210

-1

phage-related tail protein (GPX-like)

validated/finished

0.4095

0.2857

0.71

7920.76

4.84

ABAYE0569

CDS

573748

574251

504

-1

putative phage-related capsid completion protein

validated/finished

0.4048

0.2917

0.48

18707.78

9.20

ABAYE0570

CDS

574304

575050

747

-3

putative Phage small terminase subunit precursor

validated/finished

0.3922

0.2892

0.59

27708.82

6.64

ABAYE0571

CDS

575061

576071

1011

-2

phage-related capsid protein precursor (GPN-like)

validated/finished

0.4174

0.3205

0.63

36860.02

5.29

ABAYE0572

CDS

576103

576930

828

-1

phage-related capsid scaffolding protein (GPO-like)

validated/finished

0.3684

0.2500

0.65

30756.08

4.96

ABAYE0573

CDS

577062

578876

1815

phage-related terminase, ATPase subunit (GPP-like)

validated/finished

0.4006

0.3322

0.57

68931.90

6.56

ABAYE0574

CDS

578876

579874

999

phage-related portal vertex protein (GPQ-like)

validated/finished

0.3954

0.3483

0.56

37869.38

5.87

ABAYE0575

CDS

581140

582474

1335

Histidine kinase

automatic/finished

0.3805

0.3461

0.51

50312.50

5.78

ABAYE0576

CDS

glnE

582543

585293

2751

Glutamine synthetase adenylyl-L-tyrosine phosphorylase / Glutamine synthetase adenylyl transferase

automatic/finished

0.4253

0.3435

0.50

104469.64

5.35

ABAYE0577

CDS

ilvE

585306

586244

939

Branched-chain-amino-acid aminotransferase

automatic/finished

0.4111

0.2716

0.75

34861.25

6.06

ABAYE0578

CDS

586312

587202

891

conserved protein of unknown function

automatic/finished

0.3883

0.2929

0.49

33539.40

9.19

ABAYE0579

CDS

gtrOC

587225

588253

1029

Glycosyltransferase

automatic/finished

0.3712

0.3236

0.54

39828.96

8.16

ABAYE0580

CDS

588250

589005

756

NodB homology domain-containing protein

automatic/finished

0.3942

0.3294

0.58

28740.25

9.02

Acinetobacter baumannii AYE - chromosome ABAYE.1 Public

(sequence length : 3936291 bases)