MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD3376	CDS	czcB	3286833	3288086	1254	-3	RND divalent metal cation efflux membrane fusion protein	1	validated/Curated	no	no	0.5024	0.4809	0.52	46096.38	7.36
ACIAD3378	CDS	czcC	3288086	3289489	1404	-1	outer membrane protein precursor	1	validated/Curated	no	no	0.4758	0.4530	0.49	52452.56	9.00
ACIAD3379	CDS	czcI	3289536	3289925	390	-3	cation efflux system protein	2	validated/Curated	no	no	0.4795	0.4923	0.58	14430.85	6.69
ACIAD3380	CDS		3290054	3291715	1662	-1	putative transport protein (ABC superfamily, atp_bind)	2	validated/Curated	no	no	0.4398	0.3863	0.71	62374.17	5.12
ACIAD3381	CDS	poxB	3291936	3293657	1722	-3	pyruvate dehydrogenase (quinone)	1	validated/finished	no	no	0.4530	0.4199	0.57	62768.30	5.94
ACIAD3382	CDS	metY	3293919	3295202	1284	+3	homocysteine synthase	1	validated/Curated	no	no	0.4470	0.3645	0.55	46466.04	5.84
ACIAD3383	CDS	acr1	3295450	3296361	912	+1	fatty acyl-CoA reductase (hexadecanal dehydrogenase,acylating)	2	validated/Curated	no	no	0.4539	0.4342	0.56	33491.77	9.76
ACIAD3384	CDS		3296424	3298622	2199	-3	putative sulfate permease	1	validated/Curated	no	no	0.4243	0.3943	0.55	79947.00	7.35
ACIAD3386	CDS		3298894	3301284	2391	-2	putative transcriptional accessory protein	2	validated/finished	no	no	0.4475	0.3388	0.66	87955.32	5.54
ACIAD3388	CDS	ompR	3301865	3302629	765	+2	two-component response regulator	2	validated/Curated	no	no	0.4601	0.3176	0.65	28806.02	5.91
ACIAD3389	CDS	envZ	3302651	3304108	1458	+2	sensory histidine kinase in two-component regulatory system with OmpR	1	validated/Curated	no	no	0.4492	0.4239	0.55	55938.42	6.10
ACIAD3390	CDS		3304318	3305832	1515	+1	putative acetyl-CoA hydrolase/transferase	2	validated/Curated	no	no	0.4356	0.3366	0.69	54526.86	5.36
ACIAD3391	CDS		3305963	3306382	420	+2	putative acyltransferase	3	validated/Curated	no	no	0.4571	0.4286	0.55	16064.87	5.33
ACIAD3392	CDS		3306390	3307652	1263	-3	putative long-chain fatty acid transport protein	3	validated/Curated	no	no	0.4410	0.3705	0.53	45260.62	5.91
ACIAD3393	CDS		3307777	3308508	732	-2	putative SAM-dependent methyltransferase	1	validated/Curated	no	no	0.4235	0.3770	0.58	28180.72	4.73
ACIADtRNAPhe_71	tRNA		3308631	3308706	76	-1	Phe tRNA		validated/Curated	no	no
ACIADtRNAPhe_72	tRNA		3308833	3308908	76	-1	Phe tRNA		validated/Curated	no	no
ACIAD3394	CDS		3309014	3309397	384	-1	conserved hypothetical protein	1	validated/Curated	no	no	0.4661	0.4062	0.48	14144.52	5.02
ACIAD3395	CDS	hisB	3309483	3310091	609	+3	imidazoleglycerol-phosphate dehydratase	1	validated/Curated	no	no	0.4417	0.3892	0.59	22519.72	6.20
ACIAD3396	CDS	hisH	3310094	3310711	618	+2	imidazole glycerol phosphate synthetase, glutamine amidotransferase subunit	1	validated/finished	no	no	0.4353	0.3689	0.68	22718.98	5.70
ACIAD3397	CDS		3310863	3311432	570	+3	conserved hypothetical protein; putative membrane protein	3	validated/Curated	no	no	0.4158	0.3947	0.50	21241.29	9.84
ACIAD3398	CDS	hisA	3311544	3312275	732	+3	phosphoribosylformimino-5-aminoimidazole carboxamide isomerase	2	validated/Curated	no	no	0.4672	0.3811	0.60	25924.57	5.00
ACIAD3399	CDS		3312334	3316326	3993	-2	putative peptide synthetase	1	validated/Curated	no	no	0.4443	0.3892	0.61	147596.74	5.53
ACIAD3400	CDS		3316677	3318398	1722	-3	putative transport protein (ABC superfamily, atp_bind)	1	validated/Curated	no	no	0.3606	0.3711	0.60	65976.27	8.91
ACIAD3401	CDS		3318556	3318951	396	-2	putative transmembrane protein	1	validated/Curated	no	no	0.3990	0.3939	0.60	15082.17	8.87
ACIAD3402	CDS		3318989	3319615	627	-1	putative cold shock protein	3	validated/Curated	no	no	0.4370	0.4115	0.51	24019.30	9.89
ACIAD3403	CDS		3319628	3320626	999	-1	putative homoserine kinase (ThrB)	1	validated/Curated	no	no	0.4234	0.3844	0.62	37767.62	4.96
ACIAD3404	CDS	hisF	3320641	3321450	810	+1	imidazole glycerol phosphate synthase, cyclase subunit	3	validated/Curated	no	no	0.4617	0.3704	0.60	29227.24	5.72
ACIAD3405	CDS		3321561	3322202	642	-3	conserved hypothetical protein	1	validated/Curated	no	no	0.4579	0.4019	0.56	24353.08	9.64
ACIAD3406	CDS		3322298	3323308	1011	+2	conserved hypothetical protein; putative transcriptional regulator (AraC family)	1	validated/Curated	no	no	0.4471	0.4125	0.54	39354.68	7.02
ACIAD3407	CDS		3323323	3323574	252	-2	conserved hypothetical protein	3	validated/Curated	no	no	0.3929	0.3333	0.58	9348.04	4.04
ACIAD3408	CDS		3323651	3324727	1077	-1	putative DNA/RNA non-specific endonuclease G protein	1	validated/Curated	no	no	0.4550	0.4123	0.54	40064.89	9.23
ACIAD3411	CDS		3324985	3325380	396	+1	conserved hypothetical protein; putative signal peptide	2	validated/Curated	no	no	0.5025	0.2576	0.69	13212.37	4.21
ACIAD3412	CDS	trkD	3325456	3327336	1881	-2	potassium transport system, low affinity (KUP family)	1	validated/Curated	no	no	0.4498	0.4577	0.57	69407.10	6.71
ACIADtRNASer_73	tRNA		3327459	3327548	90	+1	Ser tRNA		validated/Curated	no	no
ACIAD3414	CDS		3327660	3327989	330	+3	putative integrase	3	validated/Curated	no	no	0.3333	0.2727	0.63	12609.23	9.82
ACIAD3415	CDS		3328178	3328456	279	-1	hypothetical protein	3	validated/Curated	no	no	0.2652	0.2151	0.45	10796.88	5.00
ACIAD3418	CDS		3328885	3329118	234	+1	hypothetical protein; putative conserved domain	1	validated/Curated	no	no	0.3675	0.2949	0.57	8536.55	5.47
ACIAD3419	CDS		3329180	3329746	567	+2	hypothetical protein	3	validated/Curated	no	no	0.3580	0.2910	0.51	21365.60	9.30
ACIAD3421	CDS		3330230	3331675	1446	-1	putative outer membrane protein precursor	1	validated/Curated	no	no	0.4364	0.3631	0.56	52923.56	8.42
ACIAD3422	CDS	mdtC	3331691	3334867	3177	-1	multidrug transport protein, outer membrane (RND family)	1	validated/Curated	no	no	0.4435	0.4268	0.50	115032.58	9.12
ACIAD3423	CDS	mdtB	3334864	3338025	3162	-2	multidrug transport protein (RND family)	1	validated/Curated	no	no	0.4551	0.4488	0.51	114186.87	5.96

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD3376

CDS

czcB

3286833

3288086

1254

-3

RND divalent metal cation efflux membrane fusion protein

validated/Curated

0.5024

0.4809

0.52

46096.38

7.36

ACIAD3378

CDS

czcC

3288086

3289489

1404

-1

outer membrane protein precursor

validated/Curated

0.4758

0.4530

0.49

52452.56

9.00

ACIAD3379

CDS

czcI

3289536

3289925

390

-3

cation efflux system protein

validated/Curated

0.4795

0.4923

0.58

14430.85

6.69

ACIAD3380

CDS

3290054

3291715

1662

-1

putative transport protein (ABC superfamily, atp_bind)

validated/Curated

0.4398

0.3863

0.71

62374.17

5.12

ACIAD3381

CDS

poxB

3291936

3293657

1722

-3

pyruvate dehydrogenase (quinone)

validated/finished

0.4530

0.4199

0.57

62768.30

5.94

ACIAD3382

CDS

metY

3293919

3295202

1284

homocysteine synthase

validated/Curated

0.4470

0.3645

0.55

46466.04

5.84

ACIAD3383

CDS

acr1

3295450

3296361

912

fatty acyl-CoA reductase (hexadecanal dehydrogenase,acylating)

validated/Curated

0.4539

0.4342

0.56

33491.77

9.76

ACIAD3384

CDS

3296424

3298622

2199

-3

putative sulfate permease

validated/Curated

0.4243

0.3943

0.55

79947.00

7.35

ACIAD3386

CDS

3298894

3301284

2391

-2

putative transcriptional accessory protein

validated/finished

0.4475

0.3388

0.66

87955.32

5.54

ACIAD3388

CDS

ompR

3301865

3302629

765

two-component response regulator

validated/Curated

0.4601

0.3176

0.65

28806.02

5.91

ACIAD3389

CDS

envZ

3302651

3304108

1458

sensory histidine kinase in two-component regulatory system with OmpR

validated/Curated

0.4492

0.4239

0.55

55938.42

6.10

ACIAD3390

CDS

3304318

3305832

1515

putative acetyl-CoA hydrolase/transferase

validated/Curated

0.4356

0.3366

0.69

54526.86

5.36

ACIAD3391

CDS

3305963

3306382

420

putative acyltransferase

validated/Curated

0.4571

0.4286

0.55

16064.87

5.33

ACIAD3392

CDS

3306390

3307652

1263

-3

putative long-chain fatty acid transport protein

validated/Curated

0.4410

0.3705

0.53

45260.62

5.91

ACIAD3393

CDS

3307777

3308508

732

-2

putative SAM-dependent methyltransferase

validated/Curated

0.4235

0.3770

0.58

28180.72

4.73

ACIADtRNAPhe_71

tRNA

3308631

3308706

-1

Phe tRNA

validated/Curated

ACIADtRNAPhe_72

tRNA

3308833

3308908

-1

Phe tRNA

validated/Curated

ACIAD3394

CDS

3309014

3309397

384

-1

conserved hypothetical protein

validated/Curated

0.4661

0.4062

0.48

14144.52

5.02

ACIAD3395

CDS

hisB

3309483

3310091

609

imidazoleglycerol-phosphate dehydratase

validated/Curated

0.4417

0.3892

0.59

22519.72

6.20

ACIAD3396

CDS

hisH

3310094

3310711

618

imidazole glycerol phosphate synthetase, glutamine amidotransferase subunit

validated/finished

0.4353

0.3689

0.68

22718.98

5.70

ACIAD3397

CDS

3310863

3311432

570

conserved hypothetical protein; putative membrane protein

validated/Curated

0.4158

0.3947

0.50

21241.29

9.84

ACIAD3398

CDS

hisA

3311544

3312275

732

phosphoribosylformimino-5-aminoimidazole carboxamide isomerase

validated/Curated

0.4672

0.3811

0.60

25924.57

5.00

ACIAD3399

CDS

3312334

3316326

3993

-2

putative peptide synthetase

validated/Curated

0.4443

0.3892

0.61

147596.74

5.53

ACIAD3400

CDS

3316677

3318398

1722

-3

putative transport protein (ABC superfamily, atp_bind)

validated/Curated

0.3606

0.3711

0.60

65976.27

8.91

ACIAD3401

CDS

3318556

3318951

396

-2

putative transmembrane protein

validated/Curated

0.3990

0.3939

0.60

15082.17

8.87

ACIAD3402

CDS

3318989

3319615

627

-1

putative cold shock protein

validated/Curated

0.4370

0.4115

0.51

24019.30

9.89

ACIAD3403

CDS

3319628

3320626

999

-1

putative homoserine kinase (ThrB)

validated/Curated

0.4234

0.3844

0.62

37767.62

4.96

ACIAD3404

CDS

hisF

3320641

3321450

810

imidazole glycerol phosphate synthase, cyclase subunit

validated/Curated

0.4617

0.3704

0.60

29227.24

5.72

ACIAD3405

CDS

3321561

3322202

642

-3

conserved hypothetical protein

validated/Curated

0.4579

0.4019

0.56

24353.08

9.64

ACIAD3406

CDS

3322298

3323308

1011

conserved hypothetical protein; putative transcriptional regulator (AraC family)

validated/Curated

0.4471

0.4125

0.54

39354.68

7.02

ACIAD3407

CDS

3323323

3323574

252

-2

conserved hypothetical protein

validated/Curated

0.3929

0.3333

0.58

9348.04

4.04

ACIAD3408

CDS

3323651

3324727

1077

-1

putative DNA/RNA non-specific endonuclease G protein

validated/Curated

0.4550

0.4123

0.54

40064.89

9.23

ACIAD3411

CDS

3324985

3325380

396

conserved hypothetical protein; putative signal peptide

validated/Curated

0.5025

0.2576

0.69

13212.37

4.21

ACIAD3412

CDS

trkD

3325456

3327336

1881

-2

potassium transport system, low affinity (KUP family)

validated/Curated

0.4498

0.4577

0.57

69407.10

6.71

ACIADtRNASer_73

tRNA

3327459

3327548

Ser tRNA

validated/Curated

ACIAD3414

CDS

3327660

3327989

330

putative integrase

validated/Curated

0.3333

0.2727

0.63

12609.23

9.82

ACIAD3415

CDS

3328178

3328456

279

-1

hypothetical protein

validated/Curated

0.2652

0.2151

0.45

10796.88

5.00

ACIAD3418

CDS

3328885

3329118

234

hypothetical protein; putative conserved domain

validated/Curated

0.3675

0.2949

0.57

8536.55

5.47

ACIAD3419

CDS

3329180

3329746

567

hypothetical protein

validated/Curated

0.3580

0.2910

0.51

21365.60

9.30

ACIAD3421

CDS

3330230

3331675

1446

-1

putative outer membrane protein precursor

validated/Curated

0.4364

0.3631

0.56

52923.56

8.42

ACIAD3422

CDS

mdtC

3331691

3334867

3177

-1

multidrug transport protein, outer membrane (RND family)

validated/Curated

0.4435

0.4268

0.50

115032.58

9.12

ACIAD3423

CDS

mdtB

3334864

3338025

3162

-2

multidrug transport protein (RND family)

validated/Curated

0.4551

0.4488

0.51

114186.87

5.96

Id	Begin	End	Comments
RPTR1412744	3308578	3308723	1 repeats
RPTR1412745	3308774	3308925	1 repeats
RPTR1412746	3330056	3330188	2 repeats

Sequence

Begin

End

Comments

RPTR1412744

3308578

3308723

1 repeats

RPTR1412745

3308774

3308925

1 repeats

RPTR1412746

3330056

3330188

2 repeats

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)