MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ABAYE1818	CDS		1882889	1883302	414	+2	hypothetical protein	4	validated/finished	no	no	0.3527	0.2971	0.40	15597.61	5.92
ABAYE1819	CDS	adeS	1883328	1884413	1086	-2	two-component sensor	3	validated/finished	no	no	0.3757	0.3287	0.51	40769.72	6.05
ABAYE1820	CDS	adeR	1884445	1885188	744	-1	two-component response regulator	3	validated/finished	no	no	0.3683	0.3306	0.46	28352.55	5.83
ABAYE1821	CDS	adeA	1885325	1886524	1200	+2	membrane fusion protein	4	validated/finished	no	no	0.4283	0.3225	0.48	43684.89	7.42
ABAYE1822	CDS	adeB	1886521	1889631	3111	+1	RND protein	3	validated/finished	no	no	0.4086	0.3549	0.52	112619.28	7.58
ABAYE1823	CDS	adeC	1889696	1891105	1410	+2	outer membrane protein	3	validated/finished	no	no	0.3872	0.2617	0.54	51515.44	9.08
ABAYE1824	CDS		1891198	1892112	915	-1	Hydrolase_4 domain-containing protein	3	automatic/finished	no	no	0.4240	0.2525	0.45	33026.36	7.19
ABAYE1825	CDS		1892188	1893720	1533	-1	Baeyer-Villiger monooxygenase	1	automatic/finished	no	no	0.3679	0.2505	0.55	57984.66	9.19
ABAYE1826	CDS	ethR	1894137	1894742	606	+3	HTH-type transcriptional regulator EthR	3	automatic/finished	no	no	0.3861	0.2030	0.53	23177.37	6.12
ABAYE1827	CDS		1895120	1896493	1374	+2	Putative oxidoreductase	3	automatic/finished	no	no	0.4185	0.2751	0.47	51527.81	8.81
ABAYE1828	CDS		1896480	1897169	690	+3	Putative membrane protein	4	automatic/finished	no	no	0.4159	0.3565	0.46	24787.36	6.91
ABAYE1829	CDS		1897267	1898526	1260	+1	Transporter, Ompp1/FadL/TodX family	3	automatic/finished	no	no	0.3532	0.2167	0.56	46966.61	5.17
ABAYE1830	CDS		1898762	1899034	273	-3	hypothetical protein	3	validated/finished	no	no	0.3480	0.1648	0.58	10021.12	6.77
ABAYE1831	CDS		1899037	1900254	1218	-1	putative phage/plasmid replication protein	3	validated/finished	no	no	0.3473	0.2586	0.63	46651.06	8.58
ABAYE1832	CDS		1900376	1900570	195	+2	conserved protein of unknown function	4	automatic/finished	no	no	0.3436	0.3692	0.54	7584.62	8.24
ABAYE1833	CDS		1900750	1900971	222	-1	hypothetical protein	1	validated/finished	no	no	0.2883	0.1892	0.67	8152.99	4.42
ABAYE1834	CDS		1901138	1902469	1332	-3	conserved hypothetical protein; putative phage-related protein	3	validated/finished	no	no	0.3521	0.2680	0.56	51833.93	8.55
ABAYE1835	CDS		1902375	1902659	285	-2	conserved hypothetical protein; putative Phage-related protein	4	validated/finished	no	no	0.3649	0.1789	0.55	9690.88	9.60
ABAYE1836	CDS		1902662	1904113	1452	-3	hypothetical protein	3	validated/finished	no	no	0.3912	0.2045	0.64	53105.16	4.63
ABAYE1837	CDS		1904206	1904424	219	-1	hypothetical protein; putative phage-related exported protein	4	validated/finished	no	no	0.4292	0.2466	0.69	7301.28	10.00
ABAYE1838	CDS		1904436	1904645	210	-2	hypothetical protein	5	validated/finished	no	no	0.4143	0.3429	0.49	7618.61	4.59
ABAYE1839	CDS		1904881	1905153	273	-1	hypothetical protein	3	validated/finished	no	no	0.3480	0.1648	0.58	10021.12	6.77
ABAYE1840	CDS		1905156	1906373	1218	-2	putative phage/plasmid replication protein	3	validated/finished	no	no	0.3473	0.2586	0.63	46651.06	8.58
ABAYE1841	CDS		1906495	1906689	195	+1	conserved protein of unknown function	4	automatic/finished	no	no	0.3436	0.3692	0.54	7584.62	8.24
ABAYE1842	CDS		1906897	1907184	288	-1	hypothetical protein	2	validated/finished	no	no	0.3819	0.3229	0.59	10589.58	7.96
ABAYE1843	CDS		1907196	1908455	1260	-2	putative phage/plasmid replication protein	3	validated/finished	no	no	0.3897	0.3500	0.60	48824.42	8.10
ABAYE1844	CDS		1908440	1908751	312	+2	hypothetical protein	5	validated/finished	no	no	0.3526	0.3269	0.45	11649.23	7.94
ABAYE1845	CDS		1909125	1909385	261	-2	hypothetical protein	5	validated/finished	no	no	0.3218	0.2299	0.46	9974.17	4.57
ABAYE1846	CDS		1909354	1909578	225	-1	hypothetical protein	4	validated/finished	no	no	0.3022	0.2133	0.63	8269.12	4.22
ABAYE1847	CDS		1909745	1911076	1332	-3	conserved hypothetical protein; putative phage-related protein	4	validated/finished	no	no	0.3521	0.2658	0.57	51774.81	8.55
ABAYE1848	CDS		1910982	1911266	285	-2	conserved hypothetical protein; putative Phage-related protein	4	validated/finished	no	no	0.3684	0.1895	0.54	9690.88	9.60
ABAYE1849	CDS		1911269	1912720	1452	-3	hypothetical protein	3	validated/finished	no	no	0.4001	0.2376	0.65	53215.37	4.62
ABAYE1850	CDS		1912813	1913031	219	-1	hypothetical protein; putative phage-related exported protein	2	validated/finished	no	no	0.4247	0.2329	0.68	7335.30	10.00
ABAYE1851	CDS		1913043	1913279	237	-2	hypothetical protein	5	validated/finished	no	no	0.4346	0.3671	0.47	8567.76	7.91
ABAYE1852	CDS		1913419	1913706	288	-1	hypothetical protein	1	validated/finished	no	no	0.3819	0.3229	0.59	10589.58	7.96
ABAYE1853	CDS		1913718	1914977	1260	-2	putative phage/plasmid replication protein	4	validated/finished	no	no	0.3897	0.3500	0.60	48824.42	8.10
ABAYE1854	CDS		1914962	1915273	312	+2	hypothetical protein	3	validated/finished	no	no	0.3526	0.3269	0.45	11649.23	7.94
ABAYE1855	CDS		1916313	1916603	291	+3	hypothetical protein; putative exported protein	5	validated/finished	no	no	0.2646	0.2268	0.48	10962.14	6.11
ABAYE1856	CDS		1917094	1917627	534	+1	putative fimbrial protein precursor (Pilin)	2	validated/finished	no	no	0.4064	0.2191	0.84	18239.68	4.88
ABAYE1857	CDS		1917632	1918450	819	+2	putative pilin chaperone	3	validated/finished	no	no	0.3871	0.2711	0.57	30198.54	9.56
ABAYE1858	CDS		1918508	1921066	2559	+2	putative outer membrane usher protein	3	validated/finished	no	no	0.4029	0.2860	0.61	94601.72	5.41
ABAYE1859	CDS		1921063	1922073	1011	+1	putative Fimbria adhesin protein	4	validated/finished	no	no	0.3808	0.2374	0.61	36212.40	8.99
ABAYE1860	CDS		1922186	1923163	978	+2	hypothetical protein; putative exported protein	3	validated/finished	no	no	0.3487	0.2454	0.48	36119.63	4.79

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ABAYE1818

CDS

1882889

1883302

414

hypothetical protein

validated/finished

0.3527

0.2971

0.40

15597.61

5.92

ABAYE1819

CDS

adeS

1883328

1884413

1086

-2

two-component sensor

validated/finished

0.3757

0.3287

0.51

40769.72

6.05

ABAYE1820

CDS

adeR

1884445

1885188

744

-1

two-component response regulator

validated/finished

0.3683

0.3306

0.46

28352.55

5.83

ABAYE1821

CDS

adeA

1885325

1886524

1200

membrane fusion protein

validated/finished

0.4283

0.3225

0.48

43684.89

7.42

ABAYE1822

CDS

adeB

1886521

1889631

3111

RND protein

validated/finished

0.4086

0.3549

0.52

112619.28

7.58

ABAYE1823

CDS

adeC

1889696

1891105

1410

outer membrane protein

validated/finished

0.3872

0.2617

0.54

51515.44

9.08

ABAYE1824

CDS

1891198

1892112

915

-1

Hydrolase_4 domain-containing protein

automatic/finished

0.4240

0.2525

0.45

33026.36

7.19

ABAYE1825

CDS

1892188

1893720

1533

-1

Baeyer-Villiger monooxygenase

automatic/finished

0.3679

0.2505

0.55

57984.66

9.19

ABAYE1826

CDS

ethR

1894137

1894742

606

HTH-type transcriptional regulator EthR

automatic/finished

0.3861

0.2030

0.53

23177.37

6.12

ABAYE1827

CDS

1895120

1896493

1374

Putative oxidoreductase

automatic/finished

0.4185

0.2751

0.47

51527.81

8.81

ABAYE1828

CDS

1896480

1897169

690

Putative membrane protein

automatic/finished

0.4159

0.3565

0.46

24787.36

6.91

ABAYE1829

CDS

1897267

1898526

1260

Transporter, Ompp1/FadL/TodX family

automatic/finished

0.3532

0.2167

0.56

46966.61

5.17

ABAYE1830

CDS

1898762

1899034

273

-3

hypothetical protein

validated/finished

0.3480

0.1648

0.58

10021.12

6.77

ABAYE1831

CDS

1899037

1900254

1218

-1

putative phage/plasmid replication protein

validated/finished

0.3473

0.2586

0.63

46651.06

8.58

ABAYE1832

CDS

1900376

1900570

195

conserved protein of unknown function

automatic/finished

0.3436

0.3692

0.54

7584.62

8.24

ABAYE1833

CDS

1900750

1900971

222

-1

hypothetical protein

validated/finished

0.2883

0.1892

0.67

8152.99

4.42

ABAYE1834

CDS

1901138

1902469

1332

-3

conserved hypothetical protein; putative phage-related protein

validated/finished

0.3521

0.2680

0.56

51833.93

8.55

ABAYE1835

CDS

1902375

1902659

285

-2

conserved hypothetical protein; putative Phage-related protein

validated/finished

0.3649

0.1789

0.55

9690.88

9.60

ABAYE1836

CDS

1902662

1904113

1452

-3

hypothetical protein

validated/finished

0.3912

0.2045

0.64

53105.16

4.63

ABAYE1837

CDS

1904206

1904424

219

-1

hypothetical protein; putative phage-related exported protein

validated/finished

0.4292

0.2466

0.69

7301.28

10.00

ABAYE1838

CDS

1904436

1904645

210

-2

hypothetical protein

validated/finished

0.4143

0.3429

0.49

7618.61

4.59

ABAYE1839

CDS

1904881

1905153

273

-1

hypothetical protein

validated/finished

0.3480

0.1648

0.58

10021.12

6.77

ABAYE1840

CDS

1905156

1906373

1218

-2

putative phage/plasmid replication protein

validated/finished

0.3473

0.2586

0.63

46651.06

8.58

ABAYE1841

CDS

1906495

1906689

195

conserved protein of unknown function

automatic/finished

0.3436

0.3692

0.54

7584.62

8.24

ABAYE1842

CDS

1906897

1907184

288

-1

hypothetical protein

validated/finished

0.3819

0.3229

0.59

10589.58

7.96

ABAYE1843

CDS

1907196

1908455

1260

-2

putative phage/plasmid replication protein

validated/finished

0.3897

0.3500

0.60

48824.42

8.10

ABAYE1844

CDS

1908440

1908751

312

hypothetical protein

validated/finished

0.3526

0.3269

0.45

11649.23

7.94

ABAYE1845

CDS

1909125

1909385

261

-2

hypothetical protein

validated/finished

0.3218

0.2299

0.46

9974.17

4.57

ABAYE1846

CDS

1909354

1909578

225

-1

hypothetical protein

validated/finished

0.3022

0.2133

0.63

8269.12

4.22

ABAYE1847

CDS

1909745

1911076

1332

-3

conserved hypothetical protein; putative phage-related protein

validated/finished

0.3521

0.2658

0.57

51774.81

8.55

ABAYE1848

CDS

1910982

1911266

285

-2

conserved hypothetical protein; putative Phage-related protein

validated/finished

0.3684

0.1895

0.54

9690.88

9.60

ABAYE1849

CDS

1911269

1912720

1452

-3

hypothetical protein

validated/finished

0.4001

0.2376

0.65

53215.37

4.62

ABAYE1850

CDS

1912813

1913031

219

-1

hypothetical protein; putative phage-related exported protein

validated/finished

0.4247

0.2329

0.68

7335.30

10.00

ABAYE1851

CDS

1913043

1913279

237

-2

hypothetical protein

validated/finished

0.4346

0.3671

0.47

8567.76

7.91

ABAYE1852

CDS

1913419

1913706

288

-1

hypothetical protein

validated/finished

0.3819

0.3229

0.59

10589.58

7.96

ABAYE1853

CDS

1913718

1914977

1260

-2

putative phage/plasmid replication protein

validated/finished

0.3897

0.3500

0.60

48824.42

8.10

ABAYE1854

CDS

1914962

1915273

312

hypothetical protein

validated/finished

0.3526

0.3269

0.45

11649.23

7.94

ABAYE1855

CDS

1916313

1916603

291

hypothetical protein; putative exported protein

validated/finished

0.2646

0.2268

0.48

10962.14

6.11

ABAYE1856

CDS

1917094

1917627

534

putative fimbrial protein precursor (Pilin)

validated/finished

0.4064

0.2191

0.84

18239.68

4.88

ABAYE1857

CDS

1917632

1918450

819

putative pilin chaperone

validated/finished

0.3871

0.2711

0.57

30198.54

9.56

ABAYE1858

CDS

1918508

1921066

2559

putative outer membrane usher protein

validated/finished

0.4029

0.2860

0.61

94601.72

5.41

ABAYE1859

CDS

1921063

1922073

1011

putative Fimbria adhesin protein

validated/finished

0.3808

0.2374

0.61

36212.40

8.99

ABAYE1860

CDS

1922186

1923163

978

hypothetical protein; putative exported protein

validated/finished

0.3487

0.2454

0.48

36119.63

4.79

Id	Begin	End	Comments
RPTR1387042	1898697	1904706	4 repeats
RPTR1387043	1904816	1908929	5 repeats
RPTR1387044	1909364	1913310	1 repeats
RPTR1387045	1913369	1915432	2 repeats

Sequence

Begin

End

Comments

RPTR1387042

1898697

1904706

4 repeats

RPTR1387043

1904816

1908929

5 repeats

RPTR1387044

1909364

1913310

1 repeats

RPTR1387045

1913369

1915432

2 repeats

Acinetobacter baumannii AYE - chromosome ABAYE.1 Public

(sequence length : 3936291 bases)