MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ABAYE1801	CDS	1865569	1866729	1161	+1	conserved protein of unknown function	3	automatic/finished	no	no	0.4169	0.3928	0.45	44192.04	9.24
ABAYE1802	CDS	1866855	1867826	972	+3	putative Acid phosphatase	1	validated/finished	no	no	0.4259	0.3395	0.56	34002.31	9.17
ABAYE1803	CDS	1867838	1868482	645	+2	hypothetical protein; putative peptide signal	1	validated/finished	no	no	0.3969	0.3070	0.53	23261.12	4.50
ABAYE1804	CDS	1868518	1868958	441	-1	hypothetical protein; putative Guanosine polyphosphate pyrophosphohydrolase/synthetase domain	3	validated/finished	no	no	0.3673	0.2857	0.55	16818.30	6.06
ABAYE1805	CDS	1869363	1872359	2997	+3	conserved hypothetical protein; putative bifunctional protein [Includes :putative Restriction enzyme; putative helicase]	3	validated/finished	no	no	0.3303	0.2262	0.46	113828.00	6.68
ABAYE1807	CDS	1873063	1873695	633	+1	putative transcriptional regulator (TetR family)	5	validated/finished	no	no	0.3554	0.3460	0.46	24805.10	9.10
ABAYE1808	CDS	1873793	1874233	441	-3	hypothetical protein	3	validated/finished	no	no	0.2880	0.1837	0.51	17032.60	4.30
ABAYE1809	CDS	1874235	1875122	888	-2	hypothetical protein; putative Endonuclease/Exonuclease/phosphatase domain	4	validated/finished	no	no	0.3052	0.2061	0.60	34410.69	6.16
ABAYE1810	CDS	1875677	1876264	588	+2	hypothetical protein	4	validated/finished	no	no	0.3163	0.2194	0.54	22489.12	5.59
ABAYE1811	CDS	1876275	1876805	531	+3	putative Acetyltransferase	3	validated/finished	no	no	0.3409	0.2429	0.46	19786.96	6.94
ABAYE1812	CDS	1876868	1877794	927	-3	conserved hypothetical protein; putative alpha/beta-hydrolase domain	1	validated/finished	no	no	0.4164	0.2492	0.66	33631.66	5.30
ABAYE1813	CDS	1877902	1878801	900	+1	putative transcriptional regulator (LysR family)	3	validated/finished	no	no	0.3700	0.2300	0.45	33909.81	8.77
ABAYE1814	CDS	1878897	1879739	843	-2	conserved hypothetical protein; putative Short-chain dehydrogenase/reductase	1	validated/finished	no	no	0.4140	0.3238	0.51	30505.14	9.37
ABAYE1815	CDS	1879785	1880645	861	-2	conserved hypothetical protein; putative Short-chain dehydrogenase/reductase	1	validated/finished	no	no	0.4518	0.3310	0.49	30991.74	9.28
ABAYE1816	CDS	1880676	1881716	1041	-2	conserved hypothetical protein; putative hydrolase of the alpha/beta superfamily	3	validated/finished	no	no	0.4409	0.3487	0.44	37992.14	9.00

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ABAYE1801

CDS

1865569

1866729

1161

conserved protein of unknown function

automatic/finished

0.4169

0.3928

0.45

44192.04

9.24

ABAYE1802

CDS

1866855

1867826

972

putative Acid phosphatase

validated/finished

0.4259

0.3395

0.56

34002.31

9.17

ABAYE1803

CDS

1867838

1868482

645

hypothetical protein; putative peptide signal

validated/finished

0.3969

0.3070

0.53

23261.12

4.50

ABAYE1804

CDS

1868518

1868958

441

-1

hypothetical protein; putative Guanosine polyphosphate pyrophosphohydrolase/synthetase domain

validated/finished

0.3673

0.2857

0.55

16818.30

6.06

ABAYE1805

CDS

1869363

1872359

2997

conserved hypothetical protein; putative bifunctional protein [Includes :putative Restriction enzyme; putative helicase]

validated/finished

0.3303

0.2262

0.46

113828.00

6.68

ABAYE1807

CDS

1873063

1873695

633

putative transcriptional regulator (TetR family)

validated/finished

0.3554

0.3460

0.46

24805.10

9.10

ABAYE1808

CDS

1873793

1874233

441

-3

hypothetical protein

validated/finished

0.2880

0.1837

0.51

17032.60

4.30

ABAYE1809

CDS

1874235

1875122

888

-2

hypothetical protein; putative Endonuclease/Exonuclease/phosphatase domain

validated/finished

0.3052

0.2061

0.60

34410.69

6.16

ABAYE1810

CDS

1875677

1876264

588

hypothetical protein

validated/finished

0.3163

0.2194

0.54

22489.12

5.59

ABAYE1811

CDS

1876275

1876805

531

putative Acetyltransferase

validated/finished

0.3409

0.2429

0.46

19786.96

6.94

ABAYE1812

CDS

1876868

1877794

927

-3

conserved hypothetical protein; putative alpha/beta-hydrolase domain

validated/finished

0.4164

0.2492

0.66

33631.66

5.30

ABAYE1813

CDS

1877902

1878801

900

putative transcriptional regulator (LysR family)

validated/finished

0.3700

0.2300

0.45

33909.81

8.77

ABAYE1814

CDS

1878897

1879739

843

-2

conserved hypothetical protein; putative Short-chain dehydrogenase/reductase

validated/finished

0.4140

0.3238

0.51

30505.14

9.37

ABAYE1815

CDS

1879785

1880645

861

-2

conserved hypothetical protein; putative Short-chain dehydrogenase/reductase

validated/finished

0.4518

0.3310

0.49

30991.74

9.28

ABAYE1816

CDS

1880676

1881716

1041

-2

conserved hypothetical protein; putative hydrolase of the alpha/beta superfamily

validated/finished

0.4409

0.3487

0.44

37992.14

9.00

Sequence	Id	Begin	End	Comments
	RPTR1387041	1872545	1873686	4 repeats

Sequence

Begin

End

Comments

RPTR1387041

1872545

1873686

4 repeats

Acinetobacter baumannii AYE - chromosome ABAYE.1 Public

(sequence length : 3936291 bases)